AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91251

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91251.t1 MTR_2g084360 90.355 197 18 1 19 215 1 196 4.41e-121 349
MS.gene91251.t1 MTR_2g093960 36.129 155 86 3 224 378 41 182 5.21e-26 108
MS.gene91251.t1 MTR_4g059870 34.839 155 88 3 224 378 47 188 4.20e-25 107
MS.gene91251.t1 MTR_8g017210 33.908 174 94 4 224 397 71 223 4.30e-25 107
MS.gene91251.t1 MTR_1g093095 39.024 164 91 8 235 394 105 263 5.32e-24 101
MS.gene91251.t1 MTR_2g099990 33.523 176 96 4 224 399 55 209 6.75e-24 103
MS.gene91251.t1 MTR_1g112270 36.129 155 85 4 224 378 53 193 1.56e-23 102
MS.gene91251.t1 MTR_1g112270 36.184 152 83 4 227 378 67 204 6.17e-23 101
MS.gene91251.t1 MTR_1g016010 33.548 155 90 3 224 378 50 191 1.94e-22 99.0
MS.gene91251.t1 MTR_1g094115 34.194 155 88 4 224 378 56 196 4.11e-22 98.6
MS.gene91251.t1 MTR_2g099990 34.161 161 85 4 239 399 1 140 3.83e-21 94.7
MS.gene91251.t1 MTR_2g090745 32.759 174 94 5 220 393 14 164 7.22e-21 94.4
MS.gene91251.t1 MTR_1g094115 35.338 133 72 4 246 378 61 179 1.90e-18 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91251.t1 AT5G22890 47.765 358 125 7 44 388 53 361 9.87e-110 327
MS.gene91251.t1 AT1G34370 36.598 388 195 9 8 389 47 389 6.96e-74 239
MS.gene91251.t1 AT1G34370 36.598 388 195 9 8 389 47 389 6.96e-74 239
MS.gene91251.t1 AT1G34370 59.639 166 67 0 224 389 14 179 3.01e-73 231
MS.gene91251.t1 AT3G45260 34.483 174 94 4 224 397 48 201 5.20e-25 106
MS.gene91251.t1 AT3G45260 34.483 174 94 4 224 397 48 201 5.20e-25 106
MS.gene91251.t1 AT5G60470 34.839 155 88 4 224 378 53 194 6.70e-25 106
MS.gene91251.t1 AT5G60470 34.839 155 88 4 224 378 49 190 6.80e-25 106
MS.gene91251.t1 AT5G03150 35.484 155 87 3 224 378 62 203 2.33e-24 105
MS.gene91251.t1 AT5G44160 34.194 155 88 3 224 378 46 186 2.69e-24 104
MS.gene91251.t1 AT5G60470 35.333 150 84 4 229 378 49 185 2.88e-24 104
MS.gene91251.t1 AT1G03840 33.548 155 89 3 224 378 50 190 3.30e-24 104
MS.gene91251.t1 AT1G55110 33.333 174 96 4 224 397 72 225 8.64e-24 103
MS.gene91251.t1 AT1G55110 33.333 174 96 4 224 397 72 225 8.64e-24 103
MS.gene91251.t1 AT1G55110 33.333 174 96 4 224 397 72 225 8.64e-24 103
MS.gene91251.t1 AT5G66730 35.484 155 86 4 224 378 41 181 1.00e-23 103
MS.gene91251.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.20e-23 103
MS.gene91251.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.20e-23 103
MS.gene91251.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.20e-23 103
MS.gene91251.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.20e-23 103
MS.gene91251.t1 AT2G02070 36.129 155 85 4 224 378 61 201 2.11e-23 102
MS.gene91251.t1 AT2G02070 36.129 155 85 4 224 378 61 201 2.11e-23 102
MS.gene91251.t1 AT5G44160 34.211 152 86 3 227 378 10 147 2.27e-23 101
MS.gene91251.t1 AT1G03840 34.194 155 86 4 224 378 50 188 2.36e-23 102
MS.gene91251.t1 AT1G34790 40.764 157 84 6 238 392 138 287 2.38e-23 99.8
MS.gene91251.t1 AT4G02670 35.484 155 87 3 224 378 62 203 4.56e-23 100
MS.gene91251.t1 AT4G02670 35.484 155 87 3 224 378 64 205 5.27e-23 100
MS.gene91251.t1 AT3G13810 33.548 155 90 3 224 378 79 220 1.14e-22 100
MS.gene91251.t1 AT3G13810 33.548 155 90 3 224 378 79 220 1.14e-22 100
MS.gene91251.t1 AT3G13810 33.548 155 90 3 224 378 74 215 1.17e-22 100
MS.gene91251.t1 AT3G13810 33.548 155 90 3 224 378 60 201 1.22e-22 100
MS.gene91251.t1 AT3G50700 34.839 155 87 4 224 378 43 183 1.58e-22 99.4
MS.gene91251.t1 AT3G57670 36.943 157 90 4 238 392 211 360 5.82e-22 97.1
MS.gene91251.t1 AT1G14580 34.194 155 88 4 224 378 62 202 6.25e-22 97.8
MS.gene91251.t1 AT1G14580 34.194 155 88 4 224 378 62 202 6.25e-22 97.8
MS.gene91251.t1 AT1G14580 34.194 155 88 4 224 378 76 216 7.69e-22 97.4
MS.gene91251.t1 AT3G13810 33.553 152 88 3 227 378 69 207 8.91e-22 97.4
MS.gene91251.t1 AT3G13810 33.553 152 88 3 227 378 83 221 9.09e-22 97.4
MS.gene91251.t1 AT1G51220 39.161 143 79 4 246 387 180 315 9.51e-22 95.5
MS.gene91251.t1 AT3G20880 39.161 143 79 4 246 387 258 393 1.14e-21 96.3
MS.gene91251.t1 AT1G08290 37.255 153 83 6 246 392 182 327 1.80e-21 94.7
MS.gene91251.t1 AT1G13290 39.007 141 81 3 246 386 103 238 2.83e-21 93.6
MS.gene91251.t1 AT2G01940 36.306 157 84 5 224 378 53 195 3.45e-21 95.5
MS.gene91251.t1 AT2G02080 37.594 133 69 4 246 378 8 126 8.41e-20 91.3
MS.gene91251.t1 AT2G02080 37.594 133 69 4 246 378 8 126 8.41e-20 91.3
MS.gene91251.t1 AT1G25250 33.333 156 91 4 224 378 42 185 3.48e-19 89.0
MS.gene91251.t1 AT1G68130 32.692 156 91 4 224 378 50 192 1.42e-18 87.4
MS.gene91251.t1 AT1G25250 33.333 153 89 4 227 378 22 162 2.10e-18 86.3
MS.gene91251.t1 AT2G01940 36.552 145 76 5 224 366 53 183 2.13e-18 87.0

Find 87 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTGCATACATACATTT+TGG 0.081024 2.3:+13773899 None:intergenic
TCTAATATTCAATCAAATTT+TGG 0.121082 2.3:-13774503 MS.gene91251:CDS
GACGATACATGCTTGAAATT+TGG 0.140194 2.3:-13774263 MS.gene91251:CDS
AATTTGGGTCATCTTATAAT+TGG 0.158814 2.3:-13774247 MS.gene91251:CDS
TAATCTCTATTCTTAGTAAT+TGG 0.163762 2.3:+13774053 None:intergenic
AGACCCTCTTATACTATTAT+TGG 0.167733 2.3:+13774322 None:intergenic
GAAATTCCTTCCATGGAATT+TGG 0.168179 2.3:+13774797 None:intergenic
ACTATCTCATTGTCACATTC+TGG 0.228785 2.3:+13774218 None:intergenic
TTGACGAGTCTTGTTGATTT+GGG 0.269721 2.3:+13774678 None:intergenic
TTCTAGGAAAGATAAGCTTA+TGG 0.293207 2.3:-13773781 MS.gene91251:CDS
ACGATACATGCTTGAAATTT+GGG 0.311648 2.3:-13774262 MS.gene91251:CDS
TTTCTGTTCTTTCTGATTTG+AGG 0.317726 2.3:-13773860 MS.gene91251:CDS
ATAATAGTAACATTAATTAT+AGG 0.329713 2.3:-13774394 MS.gene91251:CDS
GAGATTGAAAAGGAGGGAAT+TGG 0.343144 2.3:+13774757 None:intergenic
TCTAGGAAAGATAAGCTTAT+GGG 0.346344 2.3:-13773780 MS.gene91251:CDS
ACACCTCTAGGGTTTGAAAT+AGG 0.353386 2.3:-13774872 MS.gene91251:CDS
GTTGACGAGTCTTGTTGATT+TGG 0.361562 2.3:+13774677 None:intergenic
ACAAGACTCGTCAACATCTA+TGG 0.370241 2.3:-13774669 MS.gene91251:CDS
GAAACCAATAATAGTATAAG+AGG 0.388033 2.3:-13774326 MS.gene91251:CDS
ATTTGGGTCATCTTATAATT+GGG 0.388779 2.3:-13774246 MS.gene91251:CDS
TATGACAAACCATCGATAAC+CGG 0.393038 2.3:+13773729 None:intergenic
GTCCTCAAGAAGGGTGTAGA+TGG 0.403741 2.3:-13773998 MS.gene91251:CDS
AGAAACATTGTGGTGATCTT+AGG 0.406285 2.3:-13773830 MS.gene91251:CDS
AATCAAGTGCAAACTCTTGT+TGG 0.406380 2.3:-13774713 MS.gene91251:CDS
AAGCTTATCTTTCCTAGAAA+AGG 0.414705 2.3:+13773785 None:intergenic
ACACATTATTGTCAAGTTTG+TGG 0.417742 2.3:-13774161 MS.gene91251:CDS
TGACAATGAGATAGTTGAAT+TGG 0.426435 2.3:-13774210 MS.gene91251:CDS
GGACATGTTGGTTTGTTTGT+GGG 0.428197 2.3:-13773759 MS.gene91251:CDS
GGGACATGTTGGTTTGTTTG+TGG 0.441560 2.3:-13773760 MS.gene91251:CDS
GAGTAGAGAGATTGAAAAGG+AGG 0.443183 2.3:+13774750 None:intergenic
TACAATGATTTCTTGTATTG+TGG 0.444279 2.3:+13774628 None:intergenic
ATCAAATCTTCCGTGATCAT+AGG 0.450294 2.3:+13774827 None:intergenic
CTATCTCATTGTCACATTCT+GGG 0.458096 2.3:+13774219 None:intergenic
TAATAATGAGTCGGAACCAT+TGG 0.460337 2.3:-13774435 MS.gene91251:CDS
TCGGAACCATTGGATTGGTT+TGG 0.467072 2.3:-13774425 MS.gene91251:CDS
TATTGTCAAGTTTGTGGCAA+AGG 0.467134 2.3:-13774155 MS.gene91251:CDS
GACACAAACCTTGATCTTAG+AGG 0.473876 2.3:-13774473 MS.gene91251:CDS
ATTGTCAAGTTTGTGGCAAA+GGG 0.476447 2.3:-13774154 MS.gene91251:CDS
ATTGAAAAGGAGGGAATTGG+AGG 0.476928 2.3:+13774760 None:intergenic
TGAACTAGAAATTCCTTCCA+TGG 0.477549 2.3:+13774790 None:intergenic
ACGATGATATTGACGATCAA+AGG 0.478863 2.3:-13774367 MS.gene91251:CDS
TAATAGAAGTAGTACCTTGA+GGG 0.496518 2.3:+13774558 None:intergenic
ATTTCAAGGACAACACCTCT+AGG 0.500290 2.3:-13774884 MS.gene91251:CDS
AGGATGCATATGAGAGCTCA+TGG 0.501614 2.3:-13774110 MS.gene91251:CDS
CGATGATATTGACGATCAAA+GGG 0.503206 2.3:-13774366 MS.gene91251:CDS
GATAAGCTTATGGGACATGT+TGG 0.504366 2.3:-13773771 MS.gene91251:CDS
GATGCCATTGCCAAATTCCA+TGG 0.512772 2.3:-13774807 MS.gene91251:CDS
TGATCATAGGAAACATTTGT+AGG 0.513435 2.3:+13774840 None:intergenic
ATGAGTCGGAACCATTGGAT+TGG 0.515560 2.3:-13774430 MS.gene91251:CDS
TGACTTCAAAGGTTGAAACT+TGG 0.516503 2.3:+13773962 None:intergenic
CCTTCCATGGAATTTGGCAA+TGG 0.522098 2.3:+13774803 None:intergenic
GCACAAATCAATGACTTCAA+AGG 0.522700 2.3:+13773951 None:intergenic
AAATATTCATGTCCTCAAGA+AGG 0.523706 2.3:-13774008 MS.gene91251:CDS
TCAGAGTAGAGAGATTGAAA+AGG 0.525207 2.3:+13774747 None:intergenic
TTTGTTTGTGGGACACCACC+CGG 0.527125 2.3:-13773748 MS.gene91251:CDS
AGTAGAGAGATTGAAAAGGA+GGG 0.529561 2.3:+13774751 None:intergenic
TTGACAATAATGTGTGTACT+TGG 0.534066 2.3:+13774169 None:intergenic
GGGTTTGAAATAGGAAATCA+AGG 0.537141 2.3:-13774863 MS.gene91251:CDS
GGGTCATCTTATAATTGGGT+CGG 0.542248 2.3:-13774242 MS.gene91251:CDS
TCAAGAGGGATGCAAATTTG+AGG 0.543405 2.3:-13774130 MS.gene91251:CDS
AATATTCATGTCCTCAAGAA+GGG 0.556447 2.3:-13774007 MS.gene91251:CDS
TTGTATTGTGGAGTTCATTG+TGG 0.558473 2.3:+13774640 None:intergenic
GGACACCACCCGGTTATCGA+TGG 0.564511 2.3:-13773738 MS.gene91251:CDS
ATGACAAACCATCGATAACC+GGG 0.571281 2.3:+13773730 None:intergenic
TTCCATCTACACCCTTCTTG+AGG 0.572019 2.3:+13773996 None:intergenic
TTTCAAGGACAACACCTCTA+GGG 0.577368 2.3:-13774883 MS.gene91251:CDS
GGAAACTAAGAGCAATCTGT+TGG 0.579939 2.3:+13774579 None:intergenic
CCATTGCCAAATTCCATGGA+AGG 0.581643 2.3:-13774803 MS.gene91251:CDS
CTTTCACCAAACCAATCCAA+TGG 0.587496 2.3:+13774419 None:intergenic
TTTGTGGCAAAGGGTTCAAG+AGG 0.595190 2.3:-13774145 MS.gene91251:CDS
ACAAATGTTTCCTATGATCA+CGG 0.598164 2.3:-13774837 MS.gene91251:CDS
AACATTGTGGTGATCTTAGG+TGG 0.610982 2.3:-13773827 MS.gene91251:CDS
TGACGAGTCTTGTTGATTTG+GGG 0.614111 2.3:+13774679 None:intergenic
ATTGCTCTTAGTTTCCCTCA+AGG 0.618106 2.3:-13774572 MS.gene91251:CDS
TTAATAGAAGTAGTACCTTG+AGG 0.620130 2.3:+13774557 None:intergenic
AAACCAATAATAGTATAAGA+GGG 0.620427 2.3:-13774325 MS.gene91251:CDS
TTGAAAAGGAGGGAATTGGA+GGG 0.623406 2.3:+13774761 None:intergenic
GGATGCATATGAGAGCTCAT+GGG 0.624368 2.3:-13774109 MS.gene91251:CDS
GCAAGTGAACATCATTGATG+TGG 0.636466 2.3:+13774601 None:intergenic
CCAAAATGTATGTATGCAAG+AGG 0.650780 2.3:-13773899 MS.gene91251:CDS
TTTCCTATTTCAAACCCTAG+AGG 0.660481 2.3:+13774869 None:intergenic
CTTAGGTGGCAATGTTCATG+TGG 0.663460 2.3:-13773813 MS.gene91251:CDS
TGAGATAGTTGAATTGGACG+CGG 0.672074 2.3:-13774204 MS.gene91251:CDS
GATGCATATGAGAGCTCATG+GGG 0.685805 2.3:-13774108 MS.gene91251:CDS
TTGTGGCAAAGGGTTCAAGA+GGG 0.697728 2.3:-13774144 MS.gene91251:CDS
AGGACACATGAGAAACATTG+TGG 0.713628 2.3:-13773840 MS.gene91251:CDS
ACAAACCATCGATAACCGGG+TGG 0.755555 2.3:+13773733 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAGTAACATTAATTAT+AGG - chr2.3:13774200-13774219 MS.gene91251:CDS 10.0%
!!! TCTAATATTCAATCAAATTT+TGG - chr2.3:13774091-13774110 MS.gene91251:CDS 15.0%
!! AAACCAATAATAGTATAAGA+GGG - chr2.3:13774269-13774288 MS.gene91251:CDS 20.0%
!! TAATCTCTATTCTTAGTAAT+TGG + chr2.3:13774544-13774563 None:intergenic 20.0%
!!! CATATTTTCTAATAATGAGT+CGG - chr2.3:13774150-13774169 MS.gene91251:CDS 20.0%
! AATTTGGGTCATCTTATAAT+TGG - chr2.3:13774347-13774366 MS.gene91251:CDS 25.0%
! ATTTGGGTCATCTTATAATT+GGG - chr2.3:13774348-13774367 MS.gene91251:CDS 25.0%
! GAAACCAATAATAGTATAAG+AGG - chr2.3:13774268-13774287 MS.gene91251:CDS 25.0%
! TACAATGATTTCTTGTATTG+TGG + chr2.3:13773969-13773988 None:intergenic 25.0%
AAATATTCATGTCCTCAAGA+AGG - chr2.3:13774586-13774605 MS.gene91251:CDS 30.0%
AAGCTTATCTTTCCTAGAAA+AGG + chr2.3:13774812-13774831 None:intergenic 30.0%
AATATTCATGTCCTCAAGAA+GGG - chr2.3:13774587-13774606 MS.gene91251:CDS 30.0%
ACAAATGTTTCCTATGATCA+CGG - chr2.3:13773757-13773776 MS.gene91251:CDS 30.0%
ACACATTATTGTCAAGTTTG+TGG - chr2.3:13774433-13774452 MS.gene91251:CDS 30.0%
ACGATACATGCTTGAAATTT+GGG - chr2.3:13774332-13774351 MS.gene91251:CDS 30.0%
AGACCCTCTTATACTATTAT+TGG + chr2.3:13774275-13774294 None:intergenic 30.0%
TAATAGAAGTAGTACCTTGA+GGG + chr2.3:13774039-13774058 None:intergenic 30.0%
TCTAGGAAAGATAAGCTTAT+GGG - chr2.3:13774814-13774833 MS.gene91251:CDS 30.0%
TGACAATGAGATAGTTGAAT+TGG - chr2.3:13774384-13774403 MS.gene91251:CDS 30.0%
TGATCATAGGAAACATTTGT+AGG + chr2.3:13773757-13773776 None:intergenic 30.0%
TTAATAGAAGTAGTACCTTG+AGG + chr2.3:13774040-13774059 None:intergenic 30.0%
TTGACAATAATGTGTGTACT+TGG + chr2.3:13774428-13774447 None:intergenic 30.0%
! CTCTTGCATACATACATTTT+GGG + chr2.3:13774697-13774716 None:intergenic 30.0%
! TTCTAGGAAAGATAAGCTTA+TGG - chr2.3:13774813-13774832 MS.gene91251:CDS 30.0%
! TTTCTGTTCTTTCTGATTTG+AGG - chr2.3:13774734-13774753 MS.gene91251:CDS 30.0%
!!! ATTGCTGCTTTTGAAATTCT+TGG + chr2.3:13774072-13774091 None:intergenic 30.0%
AATCAAGTGCAAACTCTTGT+TGG - chr2.3:13773881-13773900 MS.gene91251:CDS 35.0%
ACGATGATATTGACGATCAA+AGG - chr2.3:13774227-13774246 MS.gene91251:CDS 35.0%
ACTATCTCATTGTCACATTC+TGG + chr2.3:13774379-13774398 None:intergenic 35.0%
AGAAACATTGTGGTGATCTT+AGG - chr2.3:13774764-13774783 MS.gene91251:CDS 35.0%
AGTAGAGAGATTGAAAAGGA+GGG + chr2.3:13773846-13773865 None:intergenic 35.0%
ATCAAATCTTCCGTGATCAT+AGG + chr2.3:13773770-13773789 None:intergenic 35.0%
ATTGTCAAGTTTGTGGCAAA+GGG - chr2.3:13774440-13774459 MS.gene91251:CDS 35.0%
CCAAAATGTATGTATGCAAG+AGG - chr2.3:13774695-13774714 MS.gene91251:CDS 35.0%
CGATGATATTGACGATCAAA+GGG - chr2.3:13774228-13774247 MS.gene91251:CDS 35.0%
CTATCTCATTGTCACATTCT+GGG + chr2.3:13774378-13774397 None:intergenic 35.0%
GAAATTCCTTCCATGGAATT+TGG + chr2.3:13773800-13773819 None:intergenic 35.0%
GACGATACATGCTTGAAATT+TGG - chr2.3:13774331-13774350 MS.gene91251:CDS 35.0%
GCACAAATCAATGACTTCAA+AGG + chr2.3:13774646-13774665 None:intergenic 35.0%
TAATAATGAGTCGGAACCAT+TGG - chr2.3:13774159-13774178 MS.gene91251:CDS 35.0%
TATGACAAACCATCGATAAC+CGG + chr2.3:13774868-13774887 None:intergenic 35.0%
TATTGTCAAGTTTGTGGCAA+AGG - chr2.3:13774439-13774458 MS.gene91251:CDS 35.0%
TCAGAGTAGAGAGATTGAAA+AGG + chr2.3:13773850-13773869 None:intergenic 35.0%
TGAACTAGAAATTCCTTCCA+TGG + chr2.3:13773807-13773826 None:intergenic 35.0%
TGACTTCAAAGGTTGAAACT+TGG + chr2.3:13774635-13774654 None:intergenic 35.0%
TTGTATTGTGGAGTTCATTG+TGG + chr2.3:13773957-13773976 None:intergenic 35.0%
TTTCCTATTTCAAACCCTAG+AGG + chr2.3:13773728-13773747 None:intergenic 35.0%
! CCTCTTGCATACATACATTT+TGG + chr2.3:13774698-13774717 None:intergenic 35.0%
! GGGTTTGAAATAGGAAATCA+AGG - chr2.3:13773731-13773750 MS.gene91251:CDS 35.0%
! GTTGAAACTTGGCATGTTTT+TGG + chr2.3:13774624-13774643 None:intergenic 35.0%
!! TTGACGAGTCTTGTTGATTT+GGG + chr2.3:13773919-13773938 None:intergenic 35.0%
!!! TGTTTTGACCTCTAAGATCA+AGG + chr2.3:13774132-13774151 None:intergenic 35.0%
AACATTGTGGTGATCTTAGG+TGG - chr2.3:13774767-13774786 MS.gene91251:CDS 40.0%
ACAAGACTCGTCAACATCTA+TGG - chr2.3:13773925-13773944 MS.gene91251:CDS 40.0%
AGGACACATGAGAAACATTG+TGG - chr2.3:13774754-13774773 MS.gene91251:CDS 40.0%
ATGACAAACCATCGATAACC+GGG + chr2.3:13774867-13774886 None:intergenic 40.0%
ATTGAAAAGGAGGGAATTGG+AGG + chr2.3:13773837-13773856 None:intergenic 40.0%
ATTGCTCTTAGTTTCCCTCA+AGG - chr2.3:13774022-13774041 MS.gene91251:CDS 40.0%
ATTTCAAGGACAACACCTCT+AGG - chr2.3:13773710-13773729 MS.gene91251:CDS 40.0%
CTTTCACCAAACCAATCCAA+TGG + chr2.3:13774178-13774197 None:intergenic 40.0%
GACACAAACCTTGATCTTAG+AGG - chr2.3:13774121-13774140 MS.gene91251:CDS 40.0%
GAGATTGAAAAGGAGGGAAT+TGG + chr2.3:13773840-13773859 None:intergenic 40.0%
GAGTAGAGAGATTGAAAAGG+AGG + chr2.3:13773847-13773866 None:intergenic 40.0%
GATAAGCTTATGGGACATGT+TGG - chr2.3:13774823-13774842 MS.gene91251:CDS 40.0%
GCAAGTGAACATCATTGATG+TGG + chr2.3:13773996-13774015 None:intergenic 40.0%
GGAAACTAAGAGCAATCTGT+TGG + chr2.3:13774018-13774037 None:intergenic 40.0%
GGGTCATCTTATAATTGGGT+CGG - chr2.3:13774352-13774371 MS.gene91251:CDS 40.0%
TCAAGAGGGATGCAAATTTG+AGG - chr2.3:13774464-13774483 MS.gene91251:CDS 40.0%
TGAGATAGTTGAATTGGACG+CGG - chr2.3:13774390-13774409 MS.gene91251:CDS 40.0%
TTGAAAAGGAGGGAATTGGA+GGG + chr2.3:13773836-13773855 None:intergenic 40.0%
TTTCAAGGACAACACCTCTA+GGG - chr2.3:13773711-13773730 MS.gene91251:CDS 40.0%
!! ACACCTCTAGGGTTTGAAAT+AGG - chr2.3:13773722-13773741 MS.gene91251:CDS 40.0%
!! GGACATGTTGGTTTGTTTGT+GGG - chr2.3:13774835-13774854 MS.gene91251:CDS 40.0%
!! GTTGACGAGTCTTGTTGATT+TGG + chr2.3:13773920-13773939 None:intergenic 40.0%
!! TGACGAGTCTTGTTGATTTG+GGG + chr2.3:13773918-13773937 None:intergenic 40.0%
AGGATGCATATGAGAGCTCA+TGG - chr2.3:13774484-13774503 MS.gene91251:CDS 45.0%
ATGAGTCGGAACCATTGGAT+TGG - chr2.3:13774164-13774183 MS.gene91251:CDS 45.0%
CCATTGCCAAATTCCATGGA+AGG - chr2.3:13773791-13773810 MS.gene91251:CDS 45.0%
CCTTCCATGGAATTTGGCAA+TGG + chr2.3:13773794-13773813 None:intergenic 45.0%
CTTAGGTGGCAATGTTCATG+TGG - chr2.3:13774781-13774800 MS.gene91251:CDS 45.0%
GATGCATATGAGAGCTCATG+GGG - chr2.3:13774486-13774505 MS.gene91251:CDS 45.0%
GATGCCATTGCCAAATTCCA+TGG - chr2.3:13773787-13773806 MS.gene91251:CDS 45.0%
GGATGCATATGAGAGCTCAT+GGG - chr2.3:13774485-13774504 MS.gene91251:CDS 45.0%
TTCCATCTACACCCTTCTTG+AGG + chr2.3:13774601-13774620 None:intergenic 45.0%
TTGTGGCAAAGGGTTCAAGA+GGG - chr2.3:13774450-13774469 MS.gene91251:CDS 45.0%
TTTGTGGCAAAGGGTTCAAG+AGG - chr2.3:13774449-13774468 MS.gene91251:CDS 45.0%
! CATGTGGCACTACCTTTTCT+AGG - chr2.3:13774797-13774816 MS.gene91251:CDS 45.0%
!! GGGACATGTTGGTTTGTTTG+TGG - chr2.3:13774834-13774853 MS.gene91251:CDS 45.0%
!! TCGGAACCATTGGATTGGTT+TGG - chr2.3:13774169-13774188 MS.gene91251:CDS 45.0%
ACAAACCATCGATAACCGGG+TGG + chr2.3:13774864-13774883 None:intergenic 50.0%
TTTGTTTGTGGGACACCACC+CGG - chr2.3:13774846-13774865 MS.gene91251:CDS 50.0%
! GTCCTCAAGAAGGGTGTAGA+TGG - chr2.3:13774596-13774615 MS.gene91251:CDS 50.0%
GGACACCACCCGGTTATCGA+TGG - chr2.3:13774856-13774875 MS.gene91251:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.3 gene 13773707 13774909 13773707 ID=MS.gene91251
chr2.3 mRNA 13773707 13774909 13773707 ID=MS.gene91251.t1;Parent=MS.gene91251
chr2.3 exon 13773707 13774909 13773707 ID=MS.gene91251.t1.exon1;Parent=MS.gene91251.t1
chr2.3 CDS 13773707 13774909 13773707 ID=cds.MS.gene91251.t1;Parent=MS.gene91251.t1
Gene Sequence

>MS.gene91251

ATGATTTCAAGGACAACACCTCTAGGGTTTGAAATAGGAAATCAAGGCCTACAAATGTTTCCTATGATCACGGAAGATTTGATGCCATTGCCAAATTCCATGGAAGGAATTTCTAGTTCAACTTTACCCTCCAATTCCCTCCTTTTCAATCTCTCTACTCTGAAAGACAAGCTCAATCAAGTGCAAACTCTTGTTGGTGTCATTCTCTCCCCAAATCAACAAGACTCGTCAACATCTATGGCATTATCCACAATGAACTCCACAATACAAGAAATCATTGTAACTTCCACATCAATGATGTTCACTTGCCAACAGATTGCTCTTAGTTTCCCTCAAGGTACTACTTCTATTAAGTGTGCAAACCAAGAATTTCAAAAGCAGCAATCTAATATTCAATCAAATTTTGGCAACAATGACACAAACCTTGATCTTAGAGGTCAAAACATATTTTCTAATAATGAGTCGGAACCATTGGATTGGTTTGGTGAAAGCTATAATAGTAACATTAATTATAGGCTCAACGATGATATTGACGATCAAAGGGTTGATCATGAAATTAGTGAAACCAATAATAGTATAAGAGGGTCTAATGAAGATATTTCAACGAAGAATAATTCTGATCGTGACGATACATGCTTGAAATTTGGGTCATCTTATAATTGGGTCGGCCCAGAATGTGACAATGAGATAGTTGAATTGGACGCGGCTGATTTATTAGCCAAGTACACACATTATTGTCAAGTTTGTGGCAAAGGGTTCAAGAGGGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGAGTAGTGCAGCATTGAGCAATCCAATTACTAAGAATAGAGATTATTTGATAAGTATGAAAAATAAGAAATATTCATGTCCTCAAGAAGGGTGTAGATGGAACCAAAAACATGCCAAGTTTCAACCTTTGAAGTCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCCAAAATGTATGTATGCAAGAGGTGTAATTTGAAGCAATTTTCTGTTCTTTCTGATTTGAGGACACATGAGAAACATTGTGGTGATCTTAGGTGGCAATGTTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATGGGACATGTTGGTTTGTTTGTGGGACACCACCCGGTTATCGATGGTTTGTCATATAGTAGTACTCACACAAGTTAG
Protein sequence

>MS.gene91251.t1

MISRTTPLGFEIGNQGLQMFPMITEDLMPLPNSMEGISSSTLPSNSLLFNLSTLKDKLNQVQTLVGVILSPNQQDSSTSMALSTMNSTIQEIIVTSTSMMFTCQQIALSFPQGTTSIKCANQEFQKQQSNIQSNFGNNDTNLDLRGQNIFSNNESEPLDWFGESYNSNINYRLNDDIDDQRVDHEISETNNSIRGSNEDISTKNNSDRDDTCLKFGSSYNWVGPECDNEIVELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPITKNRDYLISMKNKKYSCPQEGCRWNQKHAKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVIDGLSYSSTHTS