AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91326

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91326.t1 MTR_1g106070 90.164 183 18 0 1 183 1 183 5.46e-121 339
MS.gene91326.t1 MTR_1g105920 88.462 182 21 0 1 182 1 182 5.74e-118 334
MS.gene91326.t1 MTR_8g043650 85.165 182 27 0 1 182 1 182 5.53e-114 323
MS.gene91326.t1 MTR_1g105910 84.615 182 28 0 1 182 1 182 2.32e-113 322
MS.gene91326.t1 MTR_3g052920 82.967 182 31 0 1 182 1 182 9.82e-113 320
MS.gene91326.t1 MTR_2g030740 84.615 182 28 0 1 182 1 182 1.61e-111 317
MS.gene91326.t1 MTR_1g012570 84.066 182 29 0 1 182 1 182 5.57e-111 316
MS.gene91326.t1 MTR_3g052870 76.374 182 24 1 1 182 1 163 2.07e-93 271
MS.gene91326.t1 MTR_1g105905 77.576 165 37 0 18 182 1 165 1.68e-92 269
MS.gene91326.t1 MTR_1g108510 72.527 182 42 1 1 182 1 174 2.60e-90 263
MS.gene91326.t1 MTR_3g030770 73.077 182 41 1 1 182 1 174 2.96e-90 263
MS.gene91326.t1 MTR_1g077360 67.033 182 60 0 1 182 1 182 5.55e-86 253
MS.gene91326.t1 MTR_2g093190 70.879 182 45 1 1 182 1 174 6.04e-86 252
MS.gene91326.t1 MTR_1g108580 69.780 182 47 1 1 182 1 174 2.06e-85 251
MS.gene91326.t1 MTR_5g045560 66.298 181 61 0 1 181 1 181 6.25e-84 248
MS.gene91326.t1 MTR_1g075600 66.484 182 61 0 1 182 1 182 3.40e-83 246
MS.gene91326.t1 MTR_0121s0080 68.132 182 58 0 1 182 1 182 1.20e-82 244
MS.gene91326.t1 MTR_5g055100 62.088 182 69 0 1 182 1 182 3.19e-80 238
MS.gene91326.t1 MTR_2g085250 62.637 182 68 0 1 182 1 182 8.90e-80 237
MS.gene91326.t1 MTR_2g085280 62.637 182 68 0 1 182 1 182 9.40e-80 237
MS.gene91326.t1 MTR_5g053390 65.385 182 63 0 1 182 1 182 3.60e-79 236
MS.gene91326.t1 MTR_7g062350 65.269 167 57 1 16 181 27 193 7.82e-71 215
MS.gene91326.t1 MTR_0121s0100 71.538 130 37 0 1 130 1 130 6.41e-64 193
MS.gene91326.t1 MTR_3g030780 69.231 130 40 0 1 130 1 130 5.95e-60 183
MS.gene91326.t1 MTR_3g080940 52.410 166 79 0 7 172 7 172 1.88e-59 184
MS.gene91326.t1 MTR_1g075570 58.182 165 55 1 18 182 1 151 6.40e-55 171
MS.gene91326.t1 MTR_3g067910 63.107 103 38 0 21 123 2 104 1.93e-42 138
MS.gene91326.t1 MTR_2g105290 36.310 168 103 1 5 172 8 171 2.42e-35 122
MS.gene91326.t1 MTR_8g086290 37.349 166 94 2 5 167 8 166 1.23e-33 117
MS.gene91326.t1 MTR_1g108500 54.167 120 32 2 8 125 94 192 4.77e-31 115
MS.gene91326.t1 MTR_7g028448 39.355 155 82 2 5 159 8 150 8.71e-30 107
MS.gene91326.t1 MTR_4g036915 39.355 155 82 2 5 159 8 150 8.71e-30 107
MS.gene91326.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 7.26e-28 99.8
MS.gene91326.t1 MTR_4g127140 35.196 179 100 3 5 172 8 181 8.18e-28 103
MS.gene91326.t1 MTR_8g051580 47.525 101 51 1 9 109 2 100 2.77e-26 99.4
MS.gene91326.t1 MTR_1g047550 41.667 144 66 5 9 136 2 143 4.71e-25 95.9
MS.gene91326.t1 MTR_1g054265 45.045 111 58 2 9 118 2 110 1.16e-24 94.7
MS.gene91326.t1 MTR_1g063160 44.554 101 54 1 9 109 2 100 1.93e-24 94.4
MS.gene91326.t1 MTR_8g079502 57.746 71 30 0 9 79 2 72 2.83e-24 94.0
MS.gene91326.t1 MTR_3g067870 68.852 61 19 0 16 76 83 143 1.56e-23 91.3
MS.gene91326.t1 MTR_8g046350 39.394 132 68 3 9 135 2 126 2.13e-23 91.3
MS.gene91326.t1 MTR_4g131030 42.000 100 56 1 9 108 2 99 4.73e-23 91.7
MS.gene91326.t1 MTR_3g067915 59.701 67 27 0 60 126 30 96 1.97e-21 84.3
MS.gene91326.t1 MTR_4g094632 38.938 113 66 2 9 120 2 112 8.24e-21 84.3
MS.gene91326.t1 MTR_4g093970 33.140 172 90 5 10 161 29 195 6.97e-20 84.0
MS.gene91326.t1 MTR_5g032520 37.037 135 73 3 10 134 3 135 1.76e-18 80.1
MS.gene91326.t1 MTR_5g032150 36.029 136 75 3 9 134 2 135 2.34e-18 79.7
MS.gene91326.t1 MTR_1g053070 33.735 166 93 4 9 172 2 152 2.79e-18 79.7
MS.gene91326.t1 MTR_4g102530 50.000 72 36 0 10 81 3 74 4.53e-18 78.6
MS.gene91326.t1 MTR_3g452380 28.922 204 116 5 3 180 11 211 1.52e-17 77.8
MS.gene91326.t1 MTR_8g033220 32.941 170 95 5 10 166 3 166 1.62e-17 77.4
MS.gene91326.t1 MTR_8g033220 32.941 170 95 5 10 166 3 166 2.02e-17 77.0
MS.gene91326.t1 MTR_4g094638 50.725 69 34 0 9 77 2 70 4.48e-17 75.1
MS.gene91326.t1 MTR_2g009890 50.000 68 34 0 9 76 2 69 6.12e-17 76.6
MS.gene91326.t1 MTR_2g017865 35.606 132 75 2 9 131 17 147 6.30e-17 76.3
MS.gene91326.t1 MTR_3g005530 47.059 68 36 0 9 76 2 69 1.00e-16 75.1
MS.gene91326.t1 MTR_5g066180 48.529 68 35 0 9 76 2 69 2.25e-16 74.3
MS.gene91326.t1 MTR_7g075870 49.254 67 34 0 10 76 3 69 3.87e-16 73.6
MS.gene91326.t1 MTR_1g101970 47.059 68 36 0 9 76 2 69 4.89e-16 72.8
MS.gene91326.t1 MTR_6g464720 46.377 69 36 1 9 76 2 70 5.83e-16 73.6
MS.gene91326.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 5.96e-16 73.6
MS.gene91326.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 6.13e-16 73.2
MS.gene91326.t1 MTR_4g109830 44.928 69 37 1 9 76 2 70 7.25e-16 73.2
MS.gene91326.t1 MTR_3g102570 41.176 102 57 3 9 109 2 101 7.61e-16 73.9
MS.gene91326.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 7.70e-16 73.2
MS.gene91326.t1 MTR_8g033270 44.304 79 42 1 9 85 2 80 1.25e-15 72.8
MS.gene91326.t1 MTR_0003s0590 48.529 68 35 0 9 76 2 69 3.20e-15 71.6
MS.gene91326.t1 MTR_7g075870 50.000 68 33 1 10 76 3 70 4.73e-15 70.5
MS.gene91326.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 1.19e-14 70.1
MS.gene91326.t1 MTR_5g046790 43.662 71 37 1 9 79 2 69 1.72e-14 68.9
MS.gene91326.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 1.84e-14 69.7
MS.gene91326.t1 MTR_4g036050 31.159 138 83 5 9 136 2 137 2.28e-14 67.8
MS.gene91326.t1 MTR_4g036050 31.159 138 83 5 9 136 2 137 3.10e-14 67.8
MS.gene91326.t1 MTR_4g036050 31.159 138 83 5 9 136 2 137 3.33e-14 67.8
MS.gene91326.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 3.74e-14 68.6
MS.gene91326.t1 MTR_4g036050 31.159 138 83 5 9 136 2 137 3.77e-14 67.8
MS.gene91326.t1 MTR_4g084740 40.476 84 48 2 9 91 2 84 5.30e-14 68.9
MS.gene91326.t1 MTR_2g461710 51.786 56 27 0 9 64 2 57 9.43e-14 63.2
MS.gene91326.t1 MTR_5g021270 45.714 70 36 1 9 76 2 71 1.41e-13 67.0
MS.gene91326.t1 MTR_5g021270 45.714 70 36 1 9 76 2 71 1.49e-13 66.6
MS.gene91326.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 2.04e-13 62.4
MS.gene91326.t1 MTR_5g046870 44.928 69 37 1 9 76 2 70 2.16e-13 63.9
MS.gene91326.t1 MTR_1g038300 45.714 70 36 1 9 76 2 71 2.81e-13 65.9
MS.gene91326.t1 MTR_7g016600 44.928 69 37 1 9 76 2 70 3.39e-13 65.9
MS.gene91326.t1 MTR_1g029670 45.455 66 35 1 9 74 2 66 3.67e-13 64.7
MS.gene91326.t1 MTR_3g088615 41.429 70 39 1 9 76 2 71 4.19e-13 64.7
MS.gene91326.t1 MTR_8g022970 30.968 155 92 3 8 155 17 163 4.22e-13 64.7
MS.gene91326.t1 MTR_3g113030 44.286 70 37 1 9 76 2 71 6.29e-13 65.1
MS.gene91326.t1 MTR_4g051538 43.902 82 46 0 1 82 1 82 8.71e-13 64.7
MS.gene91326.t1 MTR_3g084980 44.928 69 37 1 9 76 2 70 2.72e-12 63.5
MS.gene91326.t1 MTR_8g097090 43.478 69 38 1 9 76 2 70 2.78e-12 63.5
MS.gene91326.t1 MTR_7g075850 41.429 70 39 1 9 76 2 71 2.98e-12 63.5
MS.gene91326.t1 MTR_4g109810 45.000 60 33 0 9 68 2 61 5.03e-12 62.8
MS.gene91326.t1 MTR_4g093030 28.144 167 67 4 9 136 2 154 1.90e-11 59.7
MS.gene91326.t1 MTR_3g437790 48.148 54 27 1 26 78 30 83 3.90e-11 59.3
MS.gene91326.t1 MTR_4g108720 33.333 129 81 5 9 134 2 128 4.66e-11 60.8
MS.gene91326.t1 MTR_3g109930 29.286 140 83 4 27 159 20 150 5.32e-11 58.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91326.t1 AT5G60440 53.714 175 78 2 5 176 3 177 7.41e-56 178
MS.gene91326.t1 AT2G24840 49.080 163 74 4 6 163 60 218 4.35e-44 147
MS.gene91326.t1 AT4G36590 46.626 163 79 3 5 160 3 164 2.97e-36 126
MS.gene91326.t1 AT1G65360 38.150 173 102 3 5 175 3 172 1.03e-34 122
MS.gene91326.t1 AT1G01530 43.210 162 85 3 4 162 2 159 3.36e-34 121
MS.gene91326.t1 AT2G34440 42.735 117 58 2 9 121 2 113 6.27e-26 98.2
MS.gene91326.t1 AT3G66656 40.157 127 72 1 9 131 2 128 1.03e-24 95.1
MS.gene91326.t1 AT3G04100 32.026 153 98 3 2 149 7 158 5.05e-23 91.7
MS.gene91326.t1 AT1G28460 32.370 173 107 3 5 174 4 169 7.69e-22 87.8
MS.gene91326.t1 AT1G72350 52.055 73 33 1 9 81 43 113 9.24e-21 85.9
MS.gene91326.t1 AT1G29962 31.902 163 102 3 5 161 4 163 1.48e-20 84.3
MS.gene91326.t1 AT4G22950 48.052 77 40 0 10 86 3 79 4.35e-19 80.5
MS.gene91326.t1 AT4G22950 40.000 110 63 1 10 119 3 109 1.29e-18 80.1
MS.gene91326.t1 AT4G22950 40.000 110 63 1 10 119 3 109 1.29e-18 80.1
MS.gene91326.t1 AT3G57230 48.529 68 35 0 9 76 2 69 2.57e-18 77.8
MS.gene91326.t1 AT4G24540 37.162 148 76 5 9 156 2 132 4.52e-18 78.6
MS.gene91326.t1 AT2G45660 50.000 68 34 0 10 77 3 70 9.73e-18 76.3
MS.gene91326.t1 AT2G22540 37.589 141 64 3 10 134 3 135 1.13e-17 78.2
MS.gene91326.t1 AT2G22540 37.589 141 64 3 10 134 3 135 1.13e-17 78.2
MS.gene91326.t1 AT3G57230 48.529 68 35 0 9 76 2 69 1.51e-17 77.8
MS.gene91326.t1 AT3G57230 48.529 68 35 0 9 76 2 69 1.51e-17 77.8
MS.gene91326.t1 AT2G45660 50.000 68 34 0 10 77 3 70 2.95e-17 76.6
MS.gene91326.t1 AT4G37940 48.529 68 35 0 9 76 2 69 3.52e-17 76.6
MS.gene91326.t1 AT4G37940 48.529 68 35 0 9 76 2 69 4.08e-17 76.3
MS.gene91326.t1 AT2G45650 48.529 68 35 0 9 76 2 69 4.48e-17 76.6
MS.gene91326.t1 AT4G37940 48.529 68 35 0 9 76 2 69 4.55e-17 75.1
MS.gene91326.t1 AT4G18960 43.956 91 49 2 5 94 15 104 8.84e-17 75.9
MS.gene91326.t1 AT1G28450 30.675 163 104 4 5 161 4 163 9.74e-17 74.3
MS.gene91326.t1 AT2G22630 47.059 68 36 0 9 76 2 69 1.86e-16 74.7
MS.gene91326.t1 AT2G22630 47.059 68 36 0 9 76 2 69 1.86e-16 74.7
MS.gene91326.t1 AT4G09960 41.860 86 49 1 9 93 2 87 2.11e-16 74.3
MS.gene91326.t1 AT4G09960 41.860 86 49 1 9 93 2 87 2.23e-16 74.3
MS.gene91326.t1 AT4G09960 41.860 86 49 1 9 93 3 88 2.24e-16 74.3
MS.gene91326.t1 AT4G09960 41.860 86 49 1 9 93 12 97 3.02e-16 74.3
MS.gene91326.t1 AT4G09960 41.860 86 49 1 9 93 28 113 3.43e-16 74.3
MS.gene91326.t1 AT1G17310 50.633 79 37 1 8 86 47 123 4.18e-16 73.6
MS.gene91326.t1 AT1G17310 50.633 79 37 1 8 86 58 134 4.68e-16 73.6
MS.gene91326.t1 AT4G09960 41.860 86 49 1 9 93 97 182 5.05e-16 74.7
MS.gene91326.t1 AT3G61120 48.529 68 35 0 9 76 2 69 5.08e-16 73.6
MS.gene91326.t1 AT2G42830 48.529 68 35 0 9 76 17 84 5.48e-16 73.6
MS.gene91326.t1 AT2G42830 48.529 68 35 0 9 76 17 84 5.50e-16 73.6
MS.gene91326.t1 AT4G11880 47.222 72 37 1 10 80 3 74 7.99e-16 72.0
MS.gene91326.t1 AT4G11880 47.222 72 37 1 10 80 3 74 7.99e-16 72.0
MS.gene91326.t1 AT3G58780 47.887 71 37 0 6 76 14 84 9.43e-16 73.2
MS.gene91326.t1 AT3G57390 47.059 68 36 0 9 76 2 69 1.02e-15 72.8
MS.gene91326.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.12e-15 72.0
MS.gene91326.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.19e-15 71.2
MS.gene91326.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.21e-15 72.4
MS.gene91326.t1 AT3G58780 47.887 71 37 0 6 76 20 90 1.21e-15 72.8
MS.gene91326.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.31e-15 72.8
MS.gene91326.t1 AT4G11880 47.222 72 37 1 10 80 3 74 1.44e-15 72.0
MS.gene91326.t1 AT4G11880 47.222 72 37 1 10 80 3 74 1.44e-15 72.0
MS.gene91326.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.52e-15 72.4
MS.gene91326.t1 AT5G51870 50.746 67 33 0 10 76 3 69 1.71e-15 72.0
MS.gene91326.t1 AT3G58780 47.887 71 37 0 6 76 14 84 1.80e-15 72.8
MS.gene91326.t1 AT5G51870 50.746 67 33 0 10 76 13 79 1.86e-15 72.0
MS.gene91326.t1 AT3G57390 47.059 68 36 0 9 76 2 69 2.25e-15 72.0
MS.gene91326.t1 AT5G51870 47.222 72 38 0 5 76 21 92 2.68e-15 70.9
MS.gene91326.t1 AT5G13790 48.529 68 35 0 9 76 2 69 3.45e-15 72.0
MS.gene91326.t1 AT5G13790 48.529 68 35 0 9 76 2 69 3.62e-15 71.6
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 4.18e-15 68.2
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 4.92e-15 69.3
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 4.92e-15 69.3
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 4.92e-15 69.3
MS.gene91326.t1 AT5G60910 47.887 71 34 1 9 79 2 69 5.55e-15 70.9
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 7.26e-15 68.9
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 7.26e-15 68.9
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 7.26e-15 68.9
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 7.26e-15 68.9
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 7.26e-15 68.9
MS.gene91326.t1 AT1G47760 32.558 129 70 4 9 134 2 116 1.01e-14 68.9
MS.gene91326.t1 AT5G10140 47.826 69 35 1 9 76 2 70 1.17e-14 68.6
MS.gene91326.t1 AT5G51860 49.254 67 34 0 10 76 3 69 1.27e-14 69.3
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.34e-14 69.3
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.34e-14 69.3
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.34e-14 69.3
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.36e-14 68.9
MS.gene91326.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.36e-14 68.9
MS.gene91326.t1 AT1G69120 46.377 69 36 1 9 76 2 70 1.72e-14 69.3
MS.gene91326.t1 AT5G10140 47.826 69 35 1 9 76 2 70 1.75e-14 68.6
MS.gene91326.t1 AT1G77950 42.105 76 42 2 9 83 2 76 1.76e-14 69.7
MS.gene91326.t1 AT1G77950 42.105 76 42 2 9 83 2 76 1.76e-14 69.7
MS.gene91326.t1 AT1G77950 42.105 76 42 2 9 83 2 76 1.76e-14 69.7
MS.gene91326.t1 AT1G77950 42.105 76 42 2 9 83 2 76 1.76e-14 69.7
MS.gene91326.t1 AT1G77980 45.070 71 38 1 9 78 2 72 1.79e-14 70.5
MS.gene91326.t1 AT5G51860 49.254 67 34 0 10 76 3 69 1.87e-14 68.9
MS.gene91326.t1 AT2G22540 36.170 141 61 4 10 134 3 130 1.91e-14 69.3
MS.gene91326.t1 AT1G71692 44.928 69 37 1 10 77 3 71 2.02e-14 68.9
MS.gene91326.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.05e-14 68.2
MS.gene91326.t1 AT5G10140 47.826 69 35 1 9 76 2 70 2.09e-14 68.6
MS.gene91326.t1 AT5G20240 29.688 128 68 3 9 114 2 129 2.51e-14 68.6
MS.gene91326.t1 AT1G69120 34.532 139 74 4 9 134 2 136 2.55e-14 69.3
MS.gene91326.t1 AT5G20240 29.688 128 68 3 9 114 2 129 2.61e-14 67.4
MS.gene91326.t1 AT1G22130 41.463 82 46 2 9 89 2 82 3.04e-14 69.7
MS.gene91326.t1 AT1G26310 44.928 69 37 1 9 76 2 70 3.64e-14 68.9
MS.gene91326.t1 AT3G54340 42.857 70 38 1 9 76 2 71 2.40e-13 66.2
MS.gene91326.t1 AT5G23260 48.052 77 36 2 5 77 12 88 3.22e-13 66.2
MS.gene91326.t1 AT5G23260 48.052 77 36 2 5 77 12 88 3.36e-13 66.2
MS.gene91326.t1 AT2G03710 44.286 70 37 2 9 76 2 71 4.47e-13 64.7
MS.gene91326.t1 AT5G23260 47.887 71 35 1 9 77 2 72 4.49e-13 65.9
MS.gene91326.t1 AT5G65050 43.478 69 38 1 9 76 2 70 4.67e-13 64.7
MS.gene91326.t1 AT5G23260 47.887 71 35 1 9 77 2 72 5.48e-13 65.5
MS.gene91326.t1 AT5G15800 44.928 69 37 1 9 76 2 70 5.95e-13 65.5
MS.gene91326.t1 AT5G49490 41.026 78 42 1 5 78 41 118 6.29e-13 65.9
MS.gene91326.t1 AT1G46408 36.975 119 66 4 10 119 5 123 7.70e-13 65.5
MS.gene91326.t1 AT5G65070 42.029 69 39 1 9 76 2 70 9.30e-13 63.2
MS.gene91326.t1 AT5G65050 43.478 69 38 1 9 76 2 70 9.48e-13 63.9
MS.gene91326.t1 AT3G58780 47.619 63 33 0 6 68 14 76 9.60e-13 65.1
MS.gene91326.t1 AT5G15800 44.928 69 37 1 9 76 2 70 9.62e-13 65.1
MS.gene91326.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.00e-12 63.9
MS.gene91326.t1 AT1G69540 35.659 129 78 4 9 134 2 128 1.03e-12 65.5
MS.gene91326.t1 AT1G69540 35.659 129 78 4 9 134 2 128 1.06e-12 65.5
MS.gene91326.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.17e-12 63.5
MS.gene91326.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.51e-12 63.5
MS.gene91326.t1 AT2G03710 44.286 70 37 2 9 76 2 71 1.61e-12 64.3
MS.gene91326.t1 AT2G03710 44.286 70 37 2 9 76 2 71 1.62e-12 64.3
MS.gene91326.t1 AT3G58780 47.541 61 32 0 6 66 14 74 1.76e-12 63.9
MS.gene91326.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.06e-12 63.2
MS.gene91326.t1 AT1G24260 43.478 69 38 1 9 76 2 70 2.46e-12 63.9
MS.gene91326.t1 AT1G24260 43.478 69 38 1 9 76 2 70 2.51e-12 63.5
MS.gene91326.t1 AT3G02310 43.478 69 38 1 9 76 2 70 2.59e-12 62.8
MS.gene91326.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.77e-12 62.8
MS.gene91326.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.06e-12 63.2
MS.gene91326.t1 AT5G49420 38.889 90 48 2 5 87 3 92 3.12e-12 64.3
MS.gene91326.t1 AT5G65060 43.478 69 38 1 9 76 2 70 3.16e-12 62.8
MS.gene91326.t1 AT1G24260 43.478 69 38 1 9 76 2 70 3.21e-12 63.2
MS.gene91326.t1 AT5G65070 42.029 69 39 1 9 76 2 70 4.36e-12 62.4
MS.gene91326.t1 AT4G37435 30.247 162 98 6 9 156 2 162 7.55e-12 61.6
MS.gene91326.t1 AT2G26320 41.429 70 39 1 9 76 18 87 8.02e-12 59.7
MS.gene91326.t1 AT1G18750 31.783 129 83 4 9 134 2 128 1.33e-11 62.4
MS.gene91326.t1 AT1G18750 31.783 129 83 4 9 134 2 128 1.35e-11 62.4
MS.gene91326.t1 AT3G02310 43.478 69 38 1 9 76 2 70 1.39e-11 61.6
MS.gene91326.t1 AT5G65080 29.688 192 107 8 9 182 9 190 1.49e-11 60.8
MS.gene91326.t1 AT5G38620 41.096 73 39 1 10 78 6 78 2.52e-11 61.6
MS.gene91326.t1 AT1G18750 32.520 123 77 5 9 127 2 122 2.68e-11 61.6
MS.gene91326.t1 AT5G65070 45.614 57 31 0 9 65 2 58 4.02e-11 60.1

Find 52 sgRNAs with CRISPR-Local

Find 55 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATAGCATGGTACCATTGTTT+TGG 0.299260 1.3:-72639286 None:intergenic
GTCCCGTTGATGGGATGAAC+AGG 0.345518 1.3:+72639453 MS.gene91326:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.346261 1.3:+72639484 MS.gene91326:CDS
TGGTTGGCTGGTCCCGTTGA+TGG 0.347475 1.3:+72639443 MS.gene91326:CDS
GGTGGTTGATCTGAGTTAGA+TGG 0.362826 1.3:-72639352 None:intergenic
CTCTCGTTGTTTACTCACCT+GGG 0.364999 1.3:+72639192 MS.gene91326:CDS
GCTCTCGTTGTTTACTCACC+TGG 0.366410 1.3:+72639191 MS.gene91326:CDS
AACTCAGATCAACCACCTAT+TGG 0.378745 1.3:+72639358 MS.gene91326:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 1.3:+72639535 MS.gene91326:CDS
TTGTTGCACATCATGCTGAT+AGG 0.402994 1.3:+72639522 MS.gene91326:CDS
CTTCTTGAATAATTCAAGTT+GGG 0.442228 1.3:-72639477 None:intergenic
GTTTCTTCTCGATGTCCAAT+AGG 0.442800 1.3:-72639373 None:intergenic
GATCGAGACTCAACTTTGGT+TGG 0.457866 1.3:+72639427 MS.gene91326:CDS
CCTTCTTGAATAATTCAAGT+TGG 0.480564 1.3:-72639478 None:intergenic
GGTGCTACGGTGAGCCTCAA+TGG 0.484756 1.3:-72639309 None:intergenic
GGTTGGCTGGTCCCGTTGAT+GGG 0.488279 1.3:+72639444 MS.gene91326:CDS
GCCCTGTTCATCCCATCAAC+GGG 0.488608 1.3:-72639455 None:intergenic
GGCCCTGTTCATCCCATCAA+CGG 0.495905 1.3:-72639456 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.499244 1.3:+72639478 MS.gene91326:CDS
GAGACTCAACTTTGGTTGGC+TGG 0.499959 1.3:+72639431 MS.gene91326:CDS
GTGGTTGATCTGAGTTAGAT+GGG 0.506455 1.3:-72639351 None:intergenic
ATTATTCAAGAAGGCTTTGG+AGG 0.515397 1.3:+72639487 MS.gene91326:CDS
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 1.3:-72639156 None:intergenic
GCTCACGCACGTTGGTGCTA+CGG 0.531315 1.3:-72639322 None:intergenic
TGTTTACTCACCTGGGGAGA+AGG 0.536541 1.3:+72639199 MS.gene91326:CDS
ATCTATGACTGTATCAACAC+TGG 0.540768 1.3:-72639240 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.3:+72639120 MS.gene91326:CDS
CTTCAATCATGTCGAGTGGA+AGG 0.559861 1.3:+72639033 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.3:+72639119 MS.gene91326:CDS
TCTTCTCGATGTCCAATAGG+TGG 0.584648 1.3:-72639370 None:intergenic
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 1.3:+72639158 MS.gene91326:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1.3:-72639209 None:intergenic
TCGAGAAAGTCACTTGCAAG+TGG 0.591713 1.3:-72639106 None:intergenic
TCTATGACTGTATCAACACT+GGG 0.592150 1.3:-72639239 None:intergenic
AGCAACATCTGCACCACAGA+GGG 0.595144 1.3:-72639171 None:intergenic
TCCCGTTGATGGGATGAACA+GGG 0.598148 1.3:+72639454 MS.gene91326:CDS
GGGTTTGAGTCGGAGCACCC+TGG 0.608427 1.3:-72639553 None:intergenic
AGTCGATCGAGACTCAACTT+TGG 0.610036 1.3:+72639423 MS.gene91326:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.3:-72639133 None:intergenic
TCTCGTTGTTTACTCACCTG+GGG 0.615216 1.3:+72639193 MS.gene91326:CDS
TCTCGATCGACTTACGCAAG+TGG 0.621173 1.3:-72639412 None:intergenic
GTGAGCCTCAATGGATAGCA+TGG 0.621366 1.3:-72639300 None:intergenic
TGGTACCATGCTATCCATTG+AGG 0.624528 1.3:+72639295 MS.gene91326:CDS
AACAGAGGAAGGGTTTGAGT+CGG 0.630945 1.3:-72639563 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 1.3:+72639536 MS.gene91326:CDS
TGTGCTTCAATCATGTCGAG+TGG 0.638522 1.3:+72639029 None:intergenic
CGAGTTCCATCCCAAAACAA+TGG 0.649823 1.3:+72639275 MS.gene91326:CDS
TGACTGTATCAACACTGGGG+TGG 0.658147 1.3:-72639235 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.3:+72639044 MS.gene91326:CDS
GGTATTAAGCTCACGCACGT+TGG 0.704138 1.3:-72639330 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 1.3:-72639172 None:intergenic
CTATGACTGTATCAACACTG+GGG 0.806256 1.3:-72639238 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTCTTGAATAATTCAAGTT+GGG - chr1.3:72639480-72639499 None:intergenic 25.0%
!!! TTTTTTTCATCGCAATCTTT+TGG - chr1.3:72639073-72639092 None:intergenic 25.0%
CCAACTTGAATTATTCAAGA+AGG + chr1.3:72639478-72639497 MS.gene91326:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG - chr1.3:72639481-72639500 None:intergenic 30.0%
TGAATTATTCAAGAAGGCTT+TGG + chr1.3:72639484-72639503 MS.gene91326:CDS 30.0%
ATCTATGACTGTATCAACAC+TGG - chr1.3:72639243-72639262 None:intergenic 35.0%
TCTATGACTGTATCAACACT+GGG - chr1.3:72639242-72639261 None:intergenic 35.0%
! ATAGCATGGTACCATTGTTT+TGG - chr1.3:72639289-72639308 None:intergenic 35.0%
! ATTATTCAAGAAGGCTTTGG+AGG + chr1.3:72639487-72639506 MS.gene91326:CDS 35.0%
! TAGCATGGTACCATTGTTTT+GGG - chr1.3:72639288-72639307 None:intergenic 35.0%
AACTCAGATCAACCACCTAT+TGG + chr1.3:72639358-72639377 MS.gene91326:CDS 40.0%
AATGAAAATACCTTCTCCCC+AGG - chr1.3:72639212-72639231 None:intergenic 40.0%
CTATGACTGTATCAACACTG+GGG - chr1.3:72639241-72639260 None:intergenic 40.0%
GTGGTTGATCTGAGTTAGAT+GGG - chr1.3:72639354-72639373 None:intergenic 40.0%
GTTTCTTCTCGATGTCCAAT+AGG - chr1.3:72639376-72639395 None:intergenic 40.0%
TTGTTGCACATCATGCTGAT+AGG + chr1.3:72639522-72639541 MS.gene91326:CDS 40.0%
!!! ATGGTACCATTGTTTTGGGA+TGG - chr1.3:72639284-72639303 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG + chr1.3:72639212-72639231 MS.gene91326:CDS 40.0%
AACAGAGGAAGGGTTTGAGT+CGG - chr1.3:72639566-72639585 None:intergenic 45.0%
AGTCGATCGAGACTCAACTT+TGG + chr1.3:72639423-72639442 MS.gene91326:CDS 45.0%
CGAGTTCCATCCCAAAACAA+TGG + chr1.3:72639275-72639294 MS.gene91326:CDS 45.0%
CTCTCGTTGTTTACTCACCT+GGG + chr1.3:72639192-72639211 MS.gene91326:CDS 45.0%
CTTTCTTGAAGAGCCCACTA+CGG - chr1.3:72639136-72639155 None:intergenic 45.0%
GATCGAGACTCAACTTTGGT+TGG + chr1.3:72639427-72639446 MS.gene91326:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG + chr1.3:72639536-72639555 MS.gene91326:CDS 45.0%
GGTGGTTGATCTGAGTTAGA+TGG - chr1.3:72639355-72639374 None:intergenic 45.0%
TCGAGAAAGTCACTTGCAAG+TGG - chr1.3:72639109-72639128 None:intergenic 45.0%
TCTCGTTGTTTACTCACCTG+GGG + chr1.3:72639193-72639212 MS.gene91326:CDS 45.0%
TCTTCTCGATGTCCAATAGG+TGG - chr1.3:72639373-72639392 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG + chr1.3:72639535-72639554 MS.gene91326:CDS 45.0%
TGGTACCATGCTATCCATTG+AGG + chr1.3:72639295-72639314 MS.gene91326:CDS 45.0%
AGCAACATCTGCACCACAGA+GGG - chr1.3:72639174-72639193 None:intergenic 50.0%
GAGACTCAACTTTGGTTGGC+TGG + chr1.3:72639431-72639450 MS.gene91326:CDS 50.0%
GCTCTCGTTGTTTACTCACC+TGG + chr1.3:72639191-72639210 MS.gene91326:CDS 50.0%
GGTATTAAGCTCACGCACGT+TGG - chr1.3:72639333-72639352 None:intergenic 50.0%
GTGAGCCTCAATGGATAGCA+TGG - chr1.3:72639303-72639322 None:intergenic 50.0%
TGACTGTATCAACACTGGGG+TGG - chr1.3:72639238-72639257 None:intergenic 50.0%
TGTTTACTCACCTGGGGAGA+AGG + chr1.3:72639199-72639218 MS.gene91326:CDS 50.0%
! TCCCGTTGATGGGATGAACA+GGG + chr1.3:72639454-72639473 MS.gene91326:CDS 50.0%
! TCGCAATCTTTTGGCGACCT+CGG - chr1.3:72639064-72639083 None:intergenic 50.0%
! TCTCGATCGACTTACGCAAG+TGG - chr1.3:72639415-72639434 None:intergenic 50.0%
AGTGAGCTTTGCACCCTCTG+TGG + chr1.3:72639158-72639177 MS.gene91326:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG - chr1.3:72639175-72639194 None:intergenic 55.0%
GCCCTGTTCATCCCATCAAC+GGG - chr1.3:72639458-72639477 None:intergenic 55.0%
GGCCCTGTTCATCCCATCAA+CGG - chr1.3:72639459-72639478 None:intergenic 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG + chr1.3:72639044-72639063 MS.gene91326:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG - chr1.3:72639159-72639178 None:intergenic 55.0%
! GTCCCGTTGATGGGATGAAC+AGG + chr1.3:72639453-72639472 MS.gene91326:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG + chr1.3:72639119-72639138 MS.gene91326:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG + chr1.3:72639120-72639139 MS.gene91326:CDS 55.0%
! GGTGCTACGGTGAGCCTCAA+TGG - chr1.3:72639312-72639331 None:intergenic 60.0%
! GGTTGGCTGGTCCCGTTGAT+GGG + chr1.3:72639444-72639463 MS.gene91326:CDS 60.0%
! TGGTTGGCTGGTCCCGTTGA+TGG + chr1.3:72639443-72639462 MS.gene91326:CDS 60.0%
!! GCTCACGCACGTTGGTGCTA+CGG - chr1.3:72639325-72639344 None:intergenic 60.0%
! GGGTTTGAGTCGGAGCACCC+TGG - chr1.3:72639556-72639575 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.3 gene 72639041 72639592 72639041 ID=MS.gene91326
chr1.3 mRNA 72639041 72639592 72639041 ID=MS.gene91326.t1;Parent=MS.gene91326
chr1.3 exon 72639041 72639592 72639041 ID=MS.gene91326.t1.exon1;Parent=MS.gene91326.t1
chr1.3 CDS 72639041 72639592 72639041 ID=cds.MS.gene91326.t1;Parent=MS.gene91326.t1
Gene Sequence

>MS.gene91326

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGCGATGAAAAAAATGAGCAACGAGAGCCACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTACTCACCTGGGGAGAAGGTATTTTCATTTGGCCACCCCAGTGTTGATACAGTCATAGATCGTTATCTCTCTCGAGTTCCATCCCAAAACAATGGTACCATGCTATCCATTGAGGCTCACCGTAGCACCAACGTGCGTGAGCTTAATACCCATCTAACTCAGATCAACCACCTATTGGACATCGAGAAGAAACGTGCTGAAGAGTTGAGCCACTTGCGTAAGTCGATCGAGACTCAACTTTGGTTGGCTGGTCCCGTTGATGGGATGAACAGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCATAAGAAACTTGTTGCACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCGACTCAAACCCTTCCTCTGTTTTTTTGA
Protein sequence

>MS.gene91326.t1

MSSGRKSRGRQKIAMKKMSNESHLQVTFSKRRSGLFKKASELCTLCGADVALVVYSPGEKVFSFGHPSVDTVIDRYLSRVPSQNNGTMLSIEAHRSTNVRELNTHLTQINHLLDIEKKRAEELSHLRKSIETQLWLAGPVDGMNRAQLELFKKALEEHKKLVAHHADRLVIQGAPTQTLPLFF