Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91393.t1 | XP_013469889.1 | 98 | 304 | 6 | 0 | 1 | 304 | 1 | 304 | 1.50E-168 | 602.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91393.t1 | Q8GUN6 | 67.4 | 301 | 95 | 1 | 4 | 304 | 3 | 300 | 3.9e-117 | 422.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91393.t1 | A0A072VQ71 | 98.0 | 304 | 6 | 0 | 1 | 304 | 1 | 304 | 1.1e-168 | 602.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055513 | MS.gene91393 | 0.805029 | 1.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91393.t1 | MTR_1g105540 | 98.026 | 304 | 6 | 0 | 1 | 304 | 1 | 304 | 0.0 | 617 |
| MS.gene91393.t1 | MTR_3g027580 | 53.333 | 75 | 31 | 3 | 35 | 108 | 89 | 160 | 1.30e-15 | 77.0 |
| MS.gene91393.t1 | MTR_2g436580 | 44.706 | 85 | 44 | 1 | 33 | 114 | 108 | 192 | 2.56e-14 | 71.2 |
| MS.gene91393.t1 | MTR_2g044580 | 40.000 | 95 | 51 | 3 | 10 | 103 | 78 | 167 | 2.56e-14 | 73.6 |
| MS.gene91393.t1 | MTR_8g464090 | 92.308 | 39 | 2 | 1 | 148 | 186 | 79 | 116 | 7.62e-14 | 69.3 |
| MS.gene91393.t1 | MTR_4g023470 | 57.377 | 61 | 25 | 1 | 37 | 96 | 88 | 148 | 1.22e-13 | 71.2 |
| MS.gene91393.t1 | MTR_7g069480 | 53.226 | 62 | 29 | 0 | 35 | 96 | 27 | 88 | 2.99e-13 | 70.5 |
| MS.gene91393.t1 | MTR_7g109340 | 52.459 | 61 | 28 | 1 | 37 | 96 | 28 | 88 | 1.70e-12 | 67.4 |
| MS.gene91393.t1 | MTR_5g065160 | 35.714 | 126 | 64 | 5 | 4 | 122 | 61 | 176 | 1.21e-11 | 65.5 |
| MS.gene91393.t1 | MTR_8g006430 | 51.667 | 60 | 26 | 1 | 37 | 96 | 16 | 72 | 1.22e-11 | 65.1 |
| MS.gene91393.t1 | MTR_3g087030 | 48.387 | 62 | 32 | 0 | 35 | 96 | 82 | 143 | 1.61e-11 | 65.1 |
| MS.gene91393.t1 | MTR_1g052110 | 41.379 | 87 | 45 | 3 | 37 | 117 | 40 | 126 | 1.69e-11 | 63.9 |
| MS.gene91393.t1 | MTR_1g110310 | 47.692 | 65 | 33 | 1 | 35 | 98 | 16 | 80 | 1.82e-11 | 64.7 |
| MS.gene91393.t1 | MTR_5g065160 | 34.921 | 126 | 66 | 5 | 4 | 122 | 54 | 170 | 2.27e-11 | 64.7 |
| MS.gene91393.t1 | MTR_2g097690 | 46.667 | 60 | 32 | 0 | 37 | 96 | 77 | 136 | 2.29e-11 | 62.4 |
| MS.gene91393.t1 | MTR_5g065160 | 34.921 | 126 | 66 | 5 | 4 | 122 | 61 | 177 | 2.40e-11 | 64.3 |
| MS.gene91393.t1 | MTR_2g436560 | 50.000 | 62 | 31 | 0 | 35 | 96 | 104 | 165 | 2.49e-11 | 63.9 |
| MS.gene91393.t1 | MTR_5g065160 | 34.921 | 126 | 66 | 5 | 4 | 122 | 61 | 177 | 2.54e-11 | 64.3 |
| MS.gene91393.t1 | MTR_5g004570 | 46.154 | 65 | 34 | 1 | 33 | 96 | 4 | 68 | 5.84e-11 | 62.0 |
| MS.gene91393.t1 | MTR_8g081620 | 30.328 | 122 | 76 | 2 | 1 | 113 | 20 | 141 | 9.56e-11 | 60.5 |
| MS.gene91393.t1 | MTR_2g097690 | 46.667 | 60 | 32 | 0 | 37 | 96 | 77 | 136 | 9.92e-11 | 61.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91393.t1 | AT1G61770 | 67.442 | 301 | 95 | 1 | 4 | 304 | 3 | 300 | 5.38e-145 | 410 |
| MS.gene91393.t1 | AT1G79940 | 41.111 | 90 | 51 | 2 | 15 | 103 | 79 | 167 | 9.54e-14 | 72.0 |
| MS.gene91393.t1 | AT1G79940 | 41.111 | 90 | 51 | 2 | 15 | 103 | 79 | 167 | 1.11e-13 | 72.0 |
| MS.gene91393.t1 | AT1G79940 | 41.111 | 90 | 51 | 2 | 15 | 103 | 79 | 167 | 1.11e-13 | 72.0 |
| MS.gene91393.t1 | AT1G79940 | 41.111 | 90 | 51 | 2 | 15 | 103 | 79 | 167 | 1.11e-13 | 72.0 |
| MS.gene91393.t1 | AT3G08970 | 53.226 | 62 | 29 | 0 | 35 | 96 | 27 | 88 | 2.01e-13 | 70.9 |
| MS.gene91393.t1 | AT3G08970 | 53.226 | 62 | 29 | 0 | 35 | 96 | 27 | 88 | 2.01e-13 | 70.9 |
| MS.gene91393.t1 | AT4G21180 | 50.000 | 68 | 32 | 2 | 37 | 103 | 101 | 167 | 2.94e-13 | 70.5 |
| MS.gene91393.t1 | AT4G21180 | 50.000 | 68 | 32 | 2 | 37 | 103 | 21 | 87 | 3.03e-13 | 70.5 |
| MS.gene91393.t1 | AT1G80030 | 43.662 | 71 | 40 | 0 | 26 | 96 | 66 | 136 | 3.31e-12 | 67.0 |
| MS.gene91393.t1 | AT1G80030 | 43.662 | 71 | 40 | 0 | 26 | 96 | 66 | 136 | 3.34e-12 | 67.0 |
| MS.gene91393.t1 | AT1G80030 | 43.662 | 71 | 40 | 0 | 26 | 96 | 66 | 136 | 3.34e-12 | 67.0 |
| MS.gene91393.t1 | AT1G80030 | 43.662 | 71 | 40 | 0 | 26 | 96 | 66 | 136 | 3.34e-12 | 67.0 |
| MS.gene91393.t1 | AT5G48030 | 48.052 | 77 | 36 | 3 | 35 | 110 | 94 | 167 | 6.28e-12 | 66.2 |
| MS.gene91393.t1 | AT3G62600 | 40.449 | 89 | 48 | 2 | 9 | 96 | 4 | 88 | 2.12e-11 | 64.3 |
| MS.gene91393.t1 | AT1G76700 | 32.593 | 135 | 75 | 5 | 33 | 155 | 4 | 134 | 2.93e-11 | 63.9 |
| MS.gene91393.t1 | AT2G22360 | 46.774 | 62 | 33 | 0 | 35 | 96 | 86 | 147 | 3.66e-11 | 63.9 |
| MS.gene91393.t1 | AT1G21080 | 46.154 | 65 | 34 | 1 | 33 | 96 | 4 | 68 | 5.55e-11 | 63.2 |
| MS.gene91393.t1 | AT1G21080 | 46.154 | 65 | 34 | 1 | 33 | 96 | 4 | 68 | 5.83e-11 | 63.2 |
| MS.gene91393.t1 | AT1G77020 | 29.577 | 142 | 87 | 4 | 37 | 175 | 8 | 139 | 8.61e-11 | 62.8 |
| MS.gene91393.t1 | AT4G39960 | 46.875 | 64 | 34 | 0 | 33 | 96 | 83 | 146 | 8.96e-11 | 62.8 |
| MS.gene91393.t1 | AT4G39960 | 46.875 | 64 | 34 | 0 | 33 | 96 | 83 | 146 | 8.96e-11 | 62.8 |
Find 77 sgRNAs with CRISPR-Local
Find 169 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGCCTTCTTCTTATTCTTTC+TGG | 0.038255 | 1.3:-71981633 | MS.gene91393:CDS |
| CCCTCCATCTGGAAACTTAT+TGG | 0.227014 | 1.3:-71980622 | MS.gene91393:CDS |
| TTGTCGTTTGATTTAGATAT+TGG | 0.233648 | 1.3:+71981607 | None:intergenic |
| AGCCACCATTTCTCCTTCTA+TGG | 0.250636 | 1.3:-71982633 | MS.gene91393:CDS |
| TATGGTCTGGCTGTTGGTTT+TGG | 0.277357 | 1.3:-71980394 | MS.gene91393:CDS |
| GAAGCATCGTCCCAAGAATA+AGG | 0.282748 | 1.3:+71980350 | None:intergenic |
| ATGAGAACCACCACGAGAAT+TGG | 0.304767 | 1.3:+71982659 | None:intergenic |
| GACGATTGCTATGATCTTCT+TGG | 0.315057 | 1.3:-71982593 | MS.gene91393:CDS |
| CAATACTATCGAGCGTACTA+TGG | 0.325766 | 1.3:-71981793 | MS.gene91393:CDS |
| CTGACCTTTCCTAAAGTATA+AGG | 0.340267 | 1.3:+71980580 | None:intergenic |
| CTTATGGAAGAAATCAAATA+TGG | 0.346626 | 1.3:-71980038 | MS.gene91393:CDS |
| GAAGAAGGGTCAAAAGAATA+AGG | 0.347312 | 1.3:-71980926 | MS.gene91393:CDS |
| ATCTTTCGCGATTCTGGATC+AGG | 0.349417 | 1.3:+71982312 | None:intergenic |
| CTAGGATCCTCGTGCTGTAT+TGG | 0.363172 | 1.3:-71981658 | MS.gene91393:intron |
| ATCCGCCGCCGGCACAATTC+CGG | 0.370392 | 1.3:-71982688 | MS.gene91393:CDS |
| GAACTGAAAGGCCCTCCATC+TGG | 0.405581 | 1.3:-71980633 | MS.gene91393:CDS |
| GAACTTGATCTGCAGATAAC+AGG | 0.414089 | 1.3:-71980655 | MS.gene91393:CDS |
| TAAAATCTAAATACCTCCTC+TGG | 0.421833 | 1.3:+71981926 | None:intergenic |
| ACGATTGCTATGATCTTCTT+GGG | 0.425140 | 1.3:-71982592 | MS.gene91393:intron |
| TAAAATCGCCAATGCTTATG+AGG | 0.429002 | 1.3:-71982283 | MS.gene91393:intron |
| TCGCAGTAGATTGCCATAGA+AGG | 0.430092 | 1.3:+71982620 | None:intergenic |
| TGCTGCTATGGTCTGGCTGT+TGG | 0.431985 | 1.3:-71980400 | MS.gene91393:CDS |
| ATCTTGTGCTAAGATGCTTA+TGG | 0.432352 | 1.3:-71980054 | MS.gene91393:CDS |
| AAGCATCGTCCCAAGAATAA+GGG | 0.434929 | 1.3:+71980351 | None:intergenic |
| CACCGGAATTGTGCCGGCGG+CGG | 0.435486 | 1.3:+71982686 | None:intergenic |
| ATCCAGCTGCTGCTATGGTC+TGG | 0.435830 | 1.3:-71980407 | MS.gene91393:intron |
| CCTGCATCCAGCTGCTGCTA+TGG | 0.450793 | 1.3:-71980412 | MS.gene91393:intron |
| TGAGAACCACCACGAGAATT+GGG | 0.452835 | 1.3:+71982660 | None:intergenic |
| CCACGAGAATTGGGCGCCAC+CGG | 0.469480 | 1.3:+71982669 | None:intergenic |
| TCAAACGACAAGGTATAATC+AGG | 0.485475 | 1.3:-71981595 | MS.gene91393:intron |
| TTGGAGCTTGAGCGCAGTGG+TGG | 0.486666 | 1.3:-71980961 | MS.gene91393:CDS |
| GAGAGAGAGGTACTGTTTCA+AGG | 0.490743 | 1.3:+71982425 | None:intergenic |
| GATTGCCATAGAAGGAGAAA+TGG | 0.492948 | 1.3:+71982628 | None:intergenic |
| TATTTGACACAAAGGTCCCT+TGG | 0.493085 | 1.3:-71980326 | MS.gene91393:CDS |
| ATACTTCTCCATCTGTCGTC+AGG | 0.494498 | 1.3:+71980299 | None:intergenic |
| GATCCTCGTGCTGTATTGGT+TGG | 0.495392 | 1.3:-71981654 | MS.gene91393:CDS |
| GACGACAGATGGAGAAGTAT+AGG | 0.513706 | 1.3:-71980296 | MS.gene91393:intron |
| TGGGATTACAAATAAGAAGA+AGG | 0.522094 | 1.3:-71980941 | MS.gene91393:CDS |
| GACCTTTATATACAGAAAAG+TGG | 0.524010 | 1.3:-71980704 | MS.gene91393:intron |
| TTGGTCTTCCTGACGACAGA+TGG | 0.524761 | 1.3:-71980307 | MS.gene91393:CDS |
| CGGCATAATGGATCCGCCGC+CGG | 0.530715 | 1.3:-71982699 | None:intergenic |
| ACCAATAAGTTTCCAGATGG+AGG | 0.531278 | 1.3:+71980621 | None:intergenic |
| GGGCGCCACCGGAATTGTGC+CGG | 0.535093 | 1.3:+71982680 | None:intergenic |
| GGAGGAAGACCTCAGTAAAG+TGG | 0.539095 | 1.3:-71980683 | MS.gene91393:CDS |
| GCTAATTAAGGCTGTGGCCA+TGG | 0.544279 | 1.3:-71981022 | MS.gene91393:intron |
| AACCAGAAAGAATAAGAAGA+AGG | 0.546053 | 1.3:+71981631 | None:intergenic |
| TTTACCTTATACTTTAGGAA+AGG | 0.558297 | 1.3:-71980584 | MS.gene91393:intron |
| TGGAGCTTGAGCGCAGTGGT+GGG | 0.561403 | 1.3:-71980960 | MS.gene91393:CDS |
| CGCCGCCGGCACAATTCCGG+TGG | 0.561521 | 1.3:-71982685 | MS.gene91393:CDS |
| GCAAGTCACCTCATAAGCAT+TGG | 0.567392 | 1.3:+71982275 | None:intergenic |
| AGGGTCAAAAGAATAAGGAC+AGG | 0.571889 | 1.3:-71980921 | MS.gene91393:intron |
| GGGATTACAAATAAGAAGAA+GGG | 0.578969 | 1.3:-71980940 | MS.gene91393:CDS |
| ATTAATAGATGAAACATCAA+AGG | 0.587415 | 1.3:-71980080 | MS.gene91393:intron |
| CGCCACCGGAATTGTGCCGG+CGG | 0.592667 | 1.3:+71982683 | None:intergenic |
| GACACCAATAAGTTTCCAGA+TGG | 0.598532 | 1.3:+71980618 | None:intergenic |
| TGCAGATAACAGGAACTGAA+AGG | 0.599633 | 1.3:-71980645 | MS.gene91393:CDS |
| ATGCTTCTTATTTGACACAA+AGG | 0.599665 | 1.3:-71980334 | MS.gene91393:CDS |
| CCGGTGGCGCCCAATTCTCG+TGG | 0.603336 | 1.3:-71982669 | MS.gene91393:CDS |
| GTTCTTCCTCCACTTTACTG+AGG | 0.607572 | 1.3:+71980674 | None:intergenic |
| AGCATCGTCCCAAGAATAAG+GGG | 0.613940 | 1.3:+71980352 | None:intergenic |
| CCAATAAGTTTCCAGATGGA+GGG | 0.621696 | 1.3:+71980622 | None:intergenic |
| TGCCATAGAAGGAGAAATGG+TGG | 0.629622 | 1.3:+71982631 | None:intergenic |
| TGCAATTGCACATCCAGAGG+AGG | 0.633391 | 1.3:-71981939 | MS.gene91393:intron |
| GGAAGACCTCAGTAAAGTGG+AGG | 0.640383 | 1.3:-71980680 | MS.gene91393:CDS |
| ATCTGTCGTCAGGAAGACCA+AGG | 0.641987 | 1.3:+71980309 | None:intergenic |
| GTGGCGCCCAATTCTCGTGG+TGG | 0.642335 | 1.3:-71982666 | MS.gene91393:CDS |
| TATAAGGTAAAAGAATGAAG+CGG | 0.650754 | 1.3:+71980596 | None:intergenic |
| TTATGCAATTGCACATCCAG+AGG | 0.664313 | 1.3:-71981942 | MS.gene91393:CDS |
| GCGTTGGAGCTTGAGCGCAG+TGG | 0.669591 | 1.3:-71980964 | MS.gene91393:CDS |
| AGCAGGTGTCTTCTTCACCA+TGG | 0.671975 | 1.3:+71981005 | None:intergenic |
| CTTTATATACAGAAAAGTGG+AGG | 0.682566 | 1.3:-71980701 | MS.gene91393:intron |
| TCTGTCGTCAGGAAGACCAA+GGG | 0.692680 | 1.3:+71980310 | None:intergenic |
| AGGCCAACCAATACAGCACG+AGG | 0.695835 | 1.3:+71981651 | None:intergenic |
| AGCGTACTATGGTCACAAGA+CGG | 0.696552 | 1.3:-71981782 | MS.gene91393:intron |
| AATATCTAAATCAAACGACA+AGG | 0.698362 | 1.3:-71981605 | MS.gene91393:CDS |
| AGAGCTACATGACAGAGATG+CGG | 0.703878 | 1.3:-71980015 | MS.gene91393:CDS |
| GTACGCTCGATAGTATTGTG+CGG | 0.765330 | 1.3:+71981798 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGATTTTATATAAACAT+TGG | - | chr1.3:71981131-71981150 | MS.gene91393:intron | 10.0% |
| !!! | TTTAATTCATTTTCTTAATT+TGG | - | chr1.3:71980284-71980303 | MS.gene91393:intron | 10.0% |
| !! | AATTCTTGTCAAATTATTAT+TGG | - | chr1.3:71980531-71980550 | MS.gene91393:intron | 15.0% |
| !! | AGTAATAAAAACATAAAAAC+AGG | + | chr1.3:71982490-71982509 | None:intergenic | 15.0% |
| !! | TGCTTATAAAAATAAACTAA+GGG | - | chr1.3:71981697-71981716 | MS.gene91393:intron | 15.0% |
| !! | AAAATCAATCAACATTTCAA+TGG | + | chr1.3:71980954-71980973 | None:intergenic | 20.0% |
| !! | ATGTTTCATCTATTAATAAC+AGG | + | chr1.3:71982600-71982619 | None:intergenic | 20.0% |
| !! | ATTAATAGATGAAACATCAA+AGG | - | chr1.3:71982603-71982622 | MS.gene91393:CDS | 20.0% |
| !! | CTGCTTATAAAAATAAACTA+AGG | - | chr1.3:71981696-71981715 | MS.gene91393:intron | 20.0% |
| !! | TCATTTGGATATTCAATTTA+TGG | - | chr1.3:71981376-71981395 | MS.gene91393:intron | 20.0% |
| !!! | AATACAAATTTGTACACTTT+TGG | + | chr1.3:71981202-71981221 | None:intergenic | 20.0% |
| !!! | ATTCTTTTACCTTATACTTT+AGG | - | chr1.3:71982094-71982113 | MS.gene91393:intron | 20.0% |
| !!! | CTTAGTTTATTTTTATAAGC+AGG | + | chr1.3:71981698-71981717 | None:intergenic | 20.0% |
| !!! | TAAAACATTTTAGCTGAAAA+TGG | + | chr1.3:71981462-71981481 | None:intergenic | 20.0% |
| !!! | TATTCAATGATTTTGAAAGT+AGG | - | chr1.3:71980440-71980459 | MS.gene91393:intron | 20.0% |
| !!! | TGAAATGTTGATTGATTTTA+TGG | - | chr1.3:71980955-71980974 | MS.gene91393:CDS | 20.0% |
| !!! | TGTTATTTGTGAAATGTTTT+CGG | - | chr1.3:71981598-71981617 | MS.gene91393:CDS | 20.0% |
| !!! | TTTTAAAATGTCTATAGTCT+TGG | - | chr1.3:71981477-71981496 | MS.gene91393:intron | 20.0% |
| !!! | TTTTATCTTATGCATAAGTT+TGG | - | chr1.3:71980775-71980794 | MS.gene91393:intron | 20.0% |
| ! | AATATCTAAATCAAACGACA+AGG | - | chr1.3:71981078-71981097 | MS.gene91393:intron | 25.0% |
| ! | CAAAATATAGTACATTGCAA+AGG | + | chr1.3:71981534-71981553 | None:intergenic | 25.0% |
| ! | CTTATGGAAGAAATCAAATA+TGG | - | chr1.3:71982645-71982664 | MS.gene91393:CDS | 25.0% |
| ! | TACTAACTAATCAGATTCAA+AGG | + | chr1.3:71980987-71981006 | None:intergenic | 25.0% |
| ! | TATAAGGTAAAAGAATGAAG+CGG | + | chr1.3:71982090-71982109 | None:intergenic | 25.0% |
| ! | TGCATAAGCAATTAAATATG+CGG | + | chr1.3:71981171-71981190 | None:intergenic | 25.0% |
| ! | TTAAATGTAATCACATGTGT+CGG | + | chr1.3:71980509-71980528 | None:intergenic | 25.0% |
| ! | TTCTTACAAAACACTTCATT+TGG | - | chr1.3:71981361-71981380 | MS.gene91393:intron | 25.0% |
| !! | AAAACAGGATGATTCTATTT+TGG | + | chr1.3:71982475-71982494 | None:intergenic | 25.0% |
| !! | AACTTCTTTACAGATTTTGA+AGG | - | chr1.3:71980693-71980712 | MS.gene91393:intron | 25.0% |
| !! | TTGTCGTTTGATTTAGATAT+TGG | + | chr1.3:71981079-71981098 | None:intergenic | 25.0% |
| !! | TTTACCTTATACTTTAGGAA+AGG | - | chr1.3:71982099-71982118 | MS.gene91393:intron | 25.0% |
| !!! | AATCTCGTTTTTTATTTGCA+GGG | - | chr1.3:71980184-71980203 | MS.gene91393:intron | 25.0% |
| !!! | GTTTTTATTACTTGTTGTTC+TGG | - | chr1.3:71982498-71982517 | MS.gene91393:intron | 25.0% |
| !!! | TGACTTTTTTGTGCTAATTA+AGG | - | chr1.3:71981649-71981668 | MS.gene91393:CDS | 25.0% |
| AACCAGAAAGAATAAGAAGA+AGG | + | chr1.3:71981055-71981074 | None:intergenic | 30.0% | |
| AGTTTGACACAATGATGTAA+GGG | - | chr1.3:71981330-71981349 | MS.gene91393:intron | 30.0% | |
| ATATTCACAAGCAAGCTATT+AGG | - | chr1.3:71981430-71981449 | MS.gene91393:intron | 30.0% | |
| ATATTCCACAACAGACAATA+TGG | + | chr1.3:71981410-71981429 | None:intergenic | 30.0% | |
| ATCGGAAGTAAAGAAATTAC+AGG | + | chr1.3:71981938-71981957 | None:intergenic | 30.0% | |
| ATCTTGGTGAGAAAATGATA+TGG | - | chr1.3:71980646-71980665 | MS.gene91393:CDS | 30.0% | |
| ATGAATTAAAACAGAGAGAG+AGG | + | chr1.3:71980274-71980293 | None:intergenic | 30.0% | |
| CAAATCAGTAAAAACCCATT+AGG | + | chr1.3:71982574-71982593 | None:intergenic | 30.0% | |
| CAGCGTTAAAATCTTCTATT+TGG | - | chr1.3:71982123-71982142 | MS.gene91393:intron | 30.0% | |
| CATCATTGTGTCAAACTAAT+TGG | + | chr1.3:71981327-71981346 | None:intergenic | 30.0% | |
| CTCTACAATGAATCTTCTTT+GGG | - | chr1.3:71982422-71982441 | MS.gene91393:intron | 30.0% | |
| CTGCAAATAAAAAACGAGAT+TGG | + | chr1.3:71980185-71980204 | None:intergenic | 30.0% | |
| CTTATGAATCAAAGAGAAAC+TGG | + | chr1.3:71981901-71981920 | None:intergenic | 30.0% | |
| CTTTATATACAGAAAAGTGG+AGG | - | chr1.3:71981982-71982001 | MS.gene91393:intron | 30.0% | |
| GACCTTTATATACAGAAAAG+TGG | - | chr1.3:71981979-71981998 | MS.gene91393:CDS | 30.0% | |
| GGGATTACAAATAAGAAGAA+GGG | - | chr1.3:71981743-71981762 | MS.gene91393:intron | 30.0% | |
| TAAAATCTAAATACCTCCTC+TGG | + | chr1.3:71980760-71980779 | None:intergenic | 30.0% | |
| TAGTTTGACACAATGATGTA+AGG | - | chr1.3:71981329-71981348 | MS.gene91393:intron | 30.0% | |
| TCAAACTAATTGGCATAAGT+AGG | + | chr1.3:71981317-71981336 | None:intergenic | 30.0% | |
| TCTCTACAATGAATCTTCTT+TGG | - | chr1.3:71982421-71982440 | MS.gene91393:intron | 30.0% | |
| TGGGATTACAAATAAGAAGA+AGG | - | chr1.3:71981742-71981761 | MS.gene91393:intron | 30.0% | |
| ! | AGAGGAAATGATAGTTTTCA+AGG | + | chr1.3:71981872-71981891 | None:intergenic | 30.0% |
| ! | AGTTATGTTCTTTTGATCTC+AGG | - | chr1.3:71980850-71980869 | MS.gene91393:intron | 30.0% |
| ! | ATGCTTCTTATTTGACACAA+AGG | - | chr1.3:71982349-71982368 | MS.gene91393:intron | 30.0% |
| ! | CAAACTAAAGACTTTCAAGT+AGG | - | chr1.3:71981503-71981522 | MS.gene91393:intron | 30.0% |
| ! | TAAAAATAAACTAAGGGCGT+TGG | - | chr1.3:71981703-71981722 | MS.gene91393:intron | 30.0% |
| ! | TAAAGACTTTCAAGTAGGTT+AGG | - | chr1.3:71981508-71981527 | MS.gene91393:intron | 30.0% |
| !! | CAAATTATTATTGGTGTCAG+TGG | - | chr1.3:71980540-71980559 | MS.gene91393:intron | 30.0% |
| !! | CTCCACTTTTCTGTATATAA+AGG | + | chr1.3:71981984-71982003 | None:intergenic | 30.0% |
| !! | TATGGTGTCATTATGAATGA+TGG | - | chr1.3:71980664-71980683 | MS.gene91393:CDS | 30.0% |
| !!! | CAATCTCGTTTTTTATTTGC+AGG | - | chr1.3:71980183-71980202 | MS.gene91393:intron | 30.0% |
| !!! | CTAATGGGTTTTTACTGATT+TGG | - | chr1.3:71982572-71982591 | MS.gene91393:intron | 30.0% |
| AAAAGTCAGTGCAATGAATC+TGG | + | chr1.3:71981637-71981656 | None:intergenic | 35.0% | |
| ACAAAAATCTTTCGCGATTC+TGG | + | chr1.3:71980380-71980399 | None:intergenic | 35.0% | |
| ACGATTGCTATGATCTTCTT+GGG | - | chr1.3:71980091-71980110 | MS.gene91393:intron | 35.0% | |
| AGCCACATTGCATTATATCT+TGG | - | chr1.3:71980630-71980649 | MS.gene91393:CDS | 35.0% | |
| ATCTTGTGCTAAGATGCTTA+TGG | - | chr1.3:71982629-71982648 | MS.gene91393:CDS | 35.0% | |
| CAAAAGAATAAGGACAGGTA+TGG | - | chr1.3:71981767-71981786 | MS.gene91393:intron | 35.0% | |
| CACCAAGATATAATGCAATG+TGG | + | chr1.3:71980635-71980654 | None:intergenic | 35.0% | |
| CTGACCTTTCCTAAAGTATA+AGG | + | chr1.3:71982106-71982125 | None:intergenic | 35.0% | |
| GAAAAAGTCCCCTTATTCTT+GGG | - | chr1.3:71982323-71982342 | MS.gene91393:CDS | 35.0% | |
| GAAATAGGAAATCGCATACA+CGG | + | chr1.3:71981815-71981834 | None:intergenic | 35.0% | |
| GAAGAAGGGTCAAAAGAATA+AGG | - | chr1.3:71981757-71981776 | MS.gene91393:intron | 35.0% | |
| GTTTGACACAATGATGTAAG+GGG | - | chr1.3:71981331-71981350 | MS.gene91393:intron | 35.0% | |
| TAAAATCGCCAATGCTTATG+AGG | - | chr1.3:71980400-71980419 | MS.gene91393:CDS | 35.0% | |
| TAGAACCATATTGTCTGTTG+TGG | - | chr1.3:71981402-71981421 | MS.gene91393:intron | 35.0% | |
| TCAAACGACAAGGTATAATC+AGG | - | chr1.3:71981088-71981107 | MS.gene91393:intron | 35.0% | |
| TCAACTAGTCAATTAGAGCA+TGG | + | chr1.3:71981251-71981270 | None:intergenic | 35.0% | |
| TCTTTACTTCCGATACACAA+TGG | - | chr1.3:71981944-71981963 | MS.gene91393:CDS | 35.0% | |
| TGAAAAAGTCCCCTTATTCT+TGG | - | chr1.3:71982322-71982341 | MS.gene91393:CDS | 35.0% | |
| TTCAAGGAGGAAAACCAAAT+TGG | + | chr1.3:71981856-71981875 | None:intergenic | 35.0% | |
| TTCCTATTTCGTATGTCTAC+TGG | - | chr1.3:71981825-71981844 | MS.gene91393:intron | 35.0% | |
| ! | TCTGGATCAGGATTTTTATC+TGG | + | chr1.3:71980362-71980381 | None:intergenic | 35.0% |
| ! | TTTTGTGCTAATTAAGGCTG+TGG | - | chr1.3:71981655-71981674 | MS.gene91393:CDS | 35.0% |
| !! | GGAAATGATAGTTTTCAAGG+AGG | + | chr1.3:71981869-71981888 | None:intergenic | 35.0% |
| ACCAATAAGTTTCCAGATGG+AGG | + | chr1.3:71982065-71982084 | None:intergenic | 40.0% | |
| ACGTCTTTGATCAGAGTTGT+CGG | + | chr1.3:71980478-71980497 | None:intergenic | 40.0% | |
| AGGGTCAAAAGAATAAGGAC+AGG | - | chr1.3:71981762-71981781 | MS.gene91393:intron | 40.0% | |
| CAATACTATCGAGCGTACTA+TGG | - | chr1.3:71980890-71980909 | MS.gene91393:intron | 40.0% | |
| CACAATTCAGCACTACAAGT+GGG | + | chr1.3:71982207-71982226 | None:intergenic | 40.0% | |
| CCAATAAGTTTCCAGATGGA+GGG | + | chr1.3:71982064-71982083 | None:intergenic | 40.0% | |
| GAACTTGATCTGCAGATAAC+AGG | - | chr1.3:71982028-71982047 | MS.gene91393:intron | 40.0% | |
| GACACCAATAAGTTTCCAGA+TGG | + | chr1.3:71982068-71982087 | None:intergenic | 40.0% | |
| GACGATTGCTATGATCTTCT+TGG | - | chr1.3:71980090-71980109 | MS.gene91393:intron | 40.0% | |
| GATTGCCATAGAAGGAGAAA+TGG | + | chr1.3:71980058-71980077 | None:intergenic | 40.0% | |
| GGAGGAAAACCAAATTGGAA+AGG | + | chr1.3:71981851-71981870 | None:intergenic | 40.0% | |
| GGCCTTCTTCTTATTCTTTC+TGG | - | chr1.3:71981050-71981069 | MS.gene91393:intron | 40.0% | |
| GTTCTCAAGAGATGCATTTG+TGG | - | chr1.3:71981272-71981291 | MS.gene91393:intron | 40.0% | |
| TATTTGACACAAAGGTCCCT+TGG | - | chr1.3:71982357-71982376 | MS.gene91393:intron | 40.0% | |
| TCACAATTCAGCACTACAAG+TGG | + | chr1.3:71982208-71982227 | None:intergenic | 40.0% | |
| TGCAGATAACAGGAACTGAA+AGG | - | chr1.3:71982038-71982057 | MS.gene91393:intron | 40.0% | |
| TTATGCAATTGCACATCCAG+AGG | - | chr1.3:71980741-71980760 | MS.gene91393:intron | 40.0% | |
| TTGAGAAACCCTGCAAATCA+CGG | + | chr1.3:71980124-71980143 | None:intergenic | 40.0% | |
| ! | AAGAGAAACTGGCTTAACAG+AGG | + | chr1.3:71981890-71981909 | None:intergenic | 40.0% |
| ! | AAGCATCGTCCCAAGAATAA+GGG | + | chr1.3:71982335-71982354 | None:intergenic | 40.0% |
| ! | CAGATTGTGCCATTGTGTAT+CGG | + | chr1.3:71981956-71981975 | None:intergenic | 40.0% |
| !! | CTTGTGTACTTTGACTTGCT+AGG | - | chr1.3:71981007-71981026 | MS.gene91393:CDS | 40.0% |
| !!! | CTGTTGGTTTTGGACATACA+AGG | - | chr1.3:71982299-71982318 | MS.gene91393:CDS | 40.0% |
| ACCAACTAGCATATCTCGTG+AGG | - | chr1.3:71982540-71982559 | MS.gene91393:intron | 45.0% | |
| AGAGCTACATGACAGAGATG+CGG | - | chr1.3:71982668-71982687 | MS.gene91393:CDS | 45.0% | |
| AGCATCGTCCCAAGAATAAG+GGG | + | chr1.3:71982334-71982353 | None:intergenic | 45.0% | |
| AGCCACCATTTCTCCTTCTA+TGG | - | chr1.3:71980050-71980069 | MS.gene91393:CDS | 45.0% | |
| AGCGTACTATGGTCACAAGA+CGG | - | chr1.3:71980901-71980920 | MS.gene91393:intron | 45.0% | |
| ATACTTCTCCATCTGTCGTC+AGG | + | chr1.3:71982387-71982406 | None:intergenic | 45.0% | |
| ATCTTTCGCGATTCTGGATC+AGG | + | chr1.3:71980374-71980393 | None:intergenic | 45.0% | |
| ATGAGAACCACCACGAGAAT+TGG | + | chr1.3:71980027-71980046 | None:intergenic | 45.0% | |
| CCAACTAGCATATCTCGTGA+GGG | - | chr1.3:71982541-71982560 | MS.gene91393:intron | 45.0% | |
| CCCTCCATCTGGAAACTTAT+TGG | - | chr1.3:71982061-71982080 | MS.gene91393:intron | 45.0% | |
| GCAAGTCACCTCATAAGCAT+TGG | + | chr1.3:71980411-71980430 | None:intergenic | 45.0% | |
| GGCCAGTAGACATACGAAAT+AGG | + | chr1.3:71981830-71981849 | None:intergenic | 45.0% | |
| GTACGCTCGATAGTATTGTG+CGG | + | chr1.3:71980888-71980907 | None:intergenic | 45.0% | |
| GTGAGGGCTCTTAACCTAAT+GGG | - | chr1.3:71982557-71982576 | MS.gene91393:intron | 45.0% | |
| GTGTCAGTGGTTCATAGAGT+TGG | - | chr1.3:71980553-71980572 | MS.gene91393:intron | 45.0% | |
| GTTCTTCCTCCACTTTACTG+AGG | + | chr1.3:71982012-71982031 | None:intergenic | 45.0% | |
| TCGCAGTAGATTGCCATAGA+AGG | + | chr1.3:71980066-71980085 | None:intergenic | 45.0% | |
| TGAGAACCACCACGAGAATT+GGG | + | chr1.3:71980026-71980045 | None:intergenic | 45.0% | |
| TGCCATAGAAGGAGAAATGG+TGG | + | chr1.3:71980055-71980074 | None:intergenic | 45.0% | |
| ! | GACGACAGATGGAGAAGTAT+AGG | - | chr1.3:71982387-71982406 | MS.gene91393:intron | 45.0% |
| ! | GTCAGTATCCGTGATTTGCA+GGG | - | chr1.3:71980113-71980132 | MS.gene91393:intron | 45.0% |
| !! | GAAGCATCGTCCCAAGAATA+AGG | + | chr1.3:71982336-71982355 | None:intergenic | 45.0% |
| !! | GAGAGAGAGGTACTGTTTCA+AGG | + | chr1.3:71980261-71980280 | None:intergenic | 45.0% |
| !! | GTCTACTGGCCTTTCCAATT+TGG | - | chr1.3:71981839-71981858 | MS.gene91393:intron | 45.0% |
| !!! | TATGGTCTGGCTGTTGGTTT+TGG | - | chr1.3:71982289-71982308 | MS.gene91393:CDS | 45.0% |
| AGCAGGTGTCTTCTTCACCA+TGG | + | chr1.3:71981681-71981700 | None:intergenic | 50.0% | |
| ATCTGTCGTCAGGAAGACCA+AGG | + | chr1.3:71982377-71982396 | None:intergenic | 50.0% | |
| CCCTCACGAGATATGCTAGT+TGG | + | chr1.3:71982544-71982563 | None:intergenic | 50.0% | |
| CGTGAGGGCTCTTAACCTAA+TGG | - | chr1.3:71982556-71982575 | MS.gene91393:intron | 50.0% | |
| CTAGGATCCTCGTGCTGTAT+TGG | - | chr1.3:71981025-71981044 | MS.gene91393:intron | 50.0% | |
| GCTAATTAAGGCTGTGGCCA+TGG | - | chr1.3:71981661-71981680 | MS.gene91393:intron | 50.0% | |
| GGAAGACCTCAGTAAAGTGG+AGG | - | chr1.3:71982003-71982022 | MS.gene91393:intron | 50.0% | |
| GGAGGAAGACCTCAGTAAAG+TGG | - | chr1.3:71982000-71982019 | MS.gene91393:intron | 50.0% | |
| TCTGTCGTCAGGAAGACCAA+GGG | + | chr1.3:71982376-71982395 | None:intergenic | 50.0% | |
| TGCAATTGCACATCCAGAGG+AGG | - | chr1.3:71980744-71980763 | MS.gene91393:intron | 50.0% | |
| ! | GATCCTCGTGCTGTATTGGT+TGG | - | chr1.3:71981029-71981048 | MS.gene91393:intron | 50.0% |
| ! | GGTCAGTATCCGTGATTTGC+AGG | - | chr1.3:71980112-71980131 | MS.gene91393:intron | 50.0% |
| ! | TTGGTCTTCCTGACGACAGA+TGG | - | chr1.3:71982376-71982395 | MS.gene91393:intron | 50.0% |
| AGGCCAACCAATACAGCACG+AGG | + | chr1.3:71981035-71981054 | None:intergenic | 55.0% | |
| ATCCAGCTGCTGCTATGGTC+TGG | - | chr1.3:71982276-71982295 | MS.gene91393:intron | 55.0% | |
| GAACTGAAAGGCCCTCCATC+TGG | - | chr1.3:71982050-71982069 | MS.gene91393:intron | 55.0% | |
| TGCTGCTATGGTCTGGCTGT+TGG | - | chr1.3:71982283-71982302 | MS.gene91393:intron | 55.0% | |
| AGCCAGACCATAGCAGCAGC+TGG | + | chr1.3:71982281-71982300 | None:intergenic | 60.0% | |
| CCATAGCAGCAGCTGGATGC+AGG | + | chr1.3:71982274-71982293 | None:intergenic | 60.0% | |
| CCTGCATCCAGCTGCTGCTA+TGG | - | chr1.3:71982271-71982290 | MS.gene91393:intron | 60.0% | |
| TGGAGCTTGAGCGCAGTGGT+GGG | - | chr1.3:71981723-71981742 | MS.gene91393:intron | 60.0% | |
| TTGGAGCTTGAGCGCAGTGG+TGG | - | chr1.3:71981722-71981741 | MS.gene91393:intron | 60.0% | |
| ATCCGCCGCCGGCACAATTC+CGG | - | chr1.3:71979995-71980014 | MS.gene91393:CDS | 65.0% | |
| CCACGAGAATTGGGCGCCAC+CGG | + | chr1.3:71980017-71980036 | None:intergenic | 65.0% | |
| GCAGCAGCTGGATGCAGGAC+AGG | + | chr1.3:71982269-71982288 | None:intergenic | 65.0% | |
| GCGTTGGAGCTTGAGCGCAG+TGG | - | chr1.3:71981719-71981738 | MS.gene91393:intron | 65.0% | |
| GTGGCGCCCAATTCTCGTGG+TGG | - | chr1.3:71980017-71980036 | MS.gene91393:CDS | 65.0% | |
| CCGGTGGCGCCCAATTCTCG+TGG | - | chr1.3:71980014-71980033 | MS.gene91393:CDS | 70.0% | |
| CGCCACCGGAATTGTGCCGG+CGG | + | chr1.3:71980003-71980022 | None:intergenic | 70.0% | |
| GGGCGCCACCGGAATTGTGC+CGG | + | chr1.3:71980006-71980025 | None:intergenic | 70.0% | |
| ! | CACCGGAATTGTGCCGGCGG+CGG | + | chr1.3:71980000-71980019 | None:intergenic | 70.0% |
| CGCCGCCGGCACAATTCCGG+TGG | - | chr1.3:71979998-71980017 | MS.gene91393:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 71979991 | 71982714 | 71979991 | ID=MS.gene91393 |
| chr1.3 | mRNA | 71979991 | 71982714 | 71979991 | ID=MS.gene91393.t1;Parent=MS.gene91393 |
| chr1.3 | exon | 71982593 | 71982714 | 71982593 | ID=MS.gene91393.t1.exon1;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71982593 | 71982714 | 71982593 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| chr1.3 | exon | 71982438 | 71982500 | 71982438 | ID=MS.gene91393.t1.exon2;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71982438 | 71982500 | 71982438 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| chr1.3 | exon | 71982284 | 71982350 | 71982284 | ID=MS.gene91393.t1.exon3;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71982284 | 71982350 | 71982284 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| chr1.3 | exon | 71981940 | 71981999 | 71981940 | ID=MS.gene91393.t1.exon4;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71981940 | 71981999 | 71981940 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| chr1.3 | exon | 71981783 | 71981833 | 71981783 | ID=MS.gene91393.t1.exon5;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71981783 | 71981833 | 71981783 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| chr1.3 | exon | 71981596 | 71981676 | 71981596 | ID=MS.gene91393.t1.exon6;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71981596 | 71981676 | 71981596 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| chr1.3 | exon | 71980922 | 71981034 | 71980922 | ID=MS.gene91393.t1.exon7;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71980922 | 71981034 | 71980922 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| chr1.3 | exon | 71980585 | 71980711 | 71980585 | ID=MS.gene91393.t1.exon8;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71980585 | 71980711 | 71980585 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| chr1.3 | exon | 71980297 | 71980423 | 71980297 | ID=MS.gene91393.t1.exon9;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71980297 | 71980423 | 71980297 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| chr1.3 | exon | 71979991 | 71980094 | 71979991 | ID=MS.gene91393.t1.exon10;Parent=MS.gene91393.t1 |
| chr1.3 | CDS | 71979991 | 71980094 | 71979991 | ID=cds.MS.gene91393.t1;Parent=MS.gene91393.t1 |
| Gene Sequence |
| Protein sequence |
