AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene91583

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91583.t1 MTR_7g014330 91.048 458 41 0 1 458 1 458 0.0 869
MS.gene91583.t1 MTR_7g014230 88.987 454 50 0 2 455 4 457 0.0 840
MS.gene91583.t1 MTR_7g014250 87.118 458 59 0 1 458 1 458 0.0 837
MS.gene91583.t1 MTR_7g014360 81.701 388 51 1 71 458 21 388 0.0 649
MS.gene91583.t1 MTR_7g014310 69.162 334 49 3 108 441 29 308 8.08e-157 446
MS.gene91583.t1 MTR_6g015815 47.210 466 226 9 2 458 8 462 1.09e-144 421
MS.gene91583.t1 MTR_6g015850 47.097 465 223 10 3 458 9 459 1.17e-140 411
MS.gene91583.t1 MTR_6g015830 47.537 467 221 11 3 458 9 462 1.88e-140 410
MS.gene91583.t1 MTR_6g015320 46.767 464 223 12 3 458 9 456 2.90e-135 397
MS.gene91583.t1 MTR_6g015315 46.104 462 230 10 3 458 6 454 5.04e-134 394
MS.gene91583.t1 MTR_7g014610 40.632 475 257 10 3 458 9 477 1.29e-109 332
MS.gene91583.t1 MTR_7g014200 41.151 469 255 12 3 458 10 470 4.98e-109 331
MS.gene91583.t1 MTR_7g014160 40.381 473 254 14 3 456 10 473 9.10e-105 320
MS.gene91583.t1 MTR_7g013850 39.046 461 242 13 27 457 30 481 3.72e-97 300
MS.gene91583.t1 MTR_7g014620 39.013 446 237 10 22 456 11 432 9.00e-89 277
MS.gene91583.t1 MTR_3g028210 34.672 473 273 10 3 456 9 464 3.19e-86 272
MS.gene91583.t1 MTR_2g089765 37.155 471 266 12 3 452 17 478 9.83e-85 268
MS.gene91583.t1 MTR_7g015860 35.579 475 257 12 3 452 6 456 2.10e-80 256
MS.gene91583.t1 MTR_8g012750 35.504 476 278 12 3 456 4 472 2.06e-79 254
MS.gene91583.t1 MTR_2g089670 37.194 449 248 13 22 452 41 473 4.87e-78 251
MS.gene91583.t1 MTR_6g015310 39.737 380 165 11 58 433 12 331 2.91e-75 239
MS.gene91583.t1 MTR_2g089650 33.747 483 266 16 3 458 10 465 5.73e-73 237
MS.gene91583.t1 MTR_2g089735 33.710 442 254 12 39 458 39 463 9.58e-72 234
MS.gene91583.t1 MTR_2g089755 33.626 455 266 13 26 458 37 477 2.06e-71 234
MS.gene91583.t1 MTR_3g087640 33.742 489 263 16 3 456 10 472 1.22e-70 231
MS.gene91583.t1 MTR_7g014205 79.389 131 16 1 295 425 1 120 3.82e-69 216
MS.gene91583.t1 MTR_7g014630 43.682 277 137 6 3 267 10 279 8.47e-68 221
MS.gene91583.t1 MTR_7g014210 83.478 115 18 1 314 427 24 138 1.72e-58 190
MS.gene91583.t1 MTR_2g089665 32.426 441 181 15 1 431 1 334 1.44e-49 172
MS.gene91583.t1 MTR_7g014180 48.214 168 81 2 3 167 8 172 1.46e-43 151
MS.gene91583.t1 MTR_3g435300 35.636 275 149 8 3 263 4 264 3.26e-40 145
MS.gene91583.t1 MTR_7g014340 94.366 71 4 0 1 71 1 71 1.97e-39 137
MS.gene91583.t1 MTR_7g014670 37.368 190 113 4 272 456 71 259 1.97e-32 124
MS.gene91583.t1 MTR_7g014220 90.164 61 6 0 14 74 6 66 5.68e-31 114
MS.gene91583.t1 MTR_4g094838 24.818 411 233 15 26 413 28 385 1.29e-21 97.1
MS.gene91583.t1 MTR_0190s0020 28.700 446 231 21 23 437 26 415 6.92e-21 95.1
MS.gene91583.t1 MTR_7g085930 25.111 450 273 12 43 456 40 461 7.81e-21 95.1
MS.gene91583.t1 MTR_4g094835 23.913 414 247 16 24 413 30 399 1.10e-20 94.7
MS.gene91583.t1 MTR_3g026310 27.523 436 246 20 10 413 6 403 1.73e-20 94.0
MS.gene91583.t1 MTR_2g064495 23.113 424 280 14 42 452 39 429 2.46e-20 93.2
MS.gene91583.t1 MTR_8g075610 25.840 387 226 17 42 409 30 374 3.29e-20 92.8
MS.gene91583.t1 MTR_3g088420 25.463 432 249 16 8 413 4 388 4.58e-20 92.4
MS.gene91583.t1 MTR_8g096530 27.528 356 220 13 62 410 59 383 1.35e-19 91.3
MS.gene91583.t1 MTR_2g105330 23.113 424 280 14 42 452 39 429 1.64e-19 90.9
MS.gene91583.t1 MTR_4g094842 26.637 443 269 18 3 427 5 409 1.85e-19 90.9
MS.gene91583.t1 MTR_3g049150 26.515 396 229 15 42 409 38 399 1.93e-19 90.9
MS.gene91583.t1 MTR_3g098980 25.935 401 255 14 62 453 66 433 2.36e-19 90.5
MS.gene91583.t1 MTR_3g026950 26.291 426 250 16 39 433 35 427 2.97e-19 90.1
MS.gene91583.t1 MTR_7g026860 26.942 412 239 17 20 409 18 389 2.84e-18 87.0
MS.gene91583.t1 MTR_4g007540 22.791 430 267 17 42 448 39 426 8.51e-18 85.9
MS.gene91583.t1 MTR_7g085990 24.714 437 265 12 56 456 49 457 1.50e-17 85.1
MS.gene91583.t1 MTR_8g079710 25.293 427 249 17 26 424 29 413 1.64e-17 85.1
MS.gene91583.t1 MTR_3g102020 27.098 417 217 20 29 408 32 398 3.18e-17 84.0
MS.gene91583.t1 MTR_4g022825 24.819 415 254 16 20 413 18 395 4.58e-17 83.6
MS.gene91583.t1 MTR_7g086000 25.542 415 272 12 62 456 60 457 1.04e-16 82.4
MS.gene91583.t1 MTR_4g094828 27.251 411 251 19 20 413 23 402 1.96e-16 81.6
MS.gene91583.t1 MTR_4g022800 28.401 419 236 19 20 413 18 397 5.64e-16 80.1
MS.gene91583.t1 MTR_3g101930 26.893 383 231 15 48 412 56 407 1.26e-15 79.3
MS.gene91583.t1 MTR_7g027175 25.496 353 229 12 62 409 68 391 2.46e-15 78.2
MS.gene91583.t1 MTR_4g022720 25.245 408 256 13 20 413 18 390 3.80e-15 77.8
MS.gene91583.t1 MTR_4g127650 23.992 471 277 17 24 456 29 456 5.35e-15 77.4
MS.gene91583.t1 MTR_3g101960 26.077 418 225 19 26 408 29 397 1.58e-14 75.9
MS.gene91583.t1 MTR_7g084940 25.234 428 271 15 39 452 48 440 1.04e-13 73.2
MS.gene91583.t1 MTR_5g026320 24.645 422 266 17 26 433 41 424 4.10e-13 71.6
MS.gene91583.t1 MTR_4g022760 26.382 398 215 18 10 377 6 355 4.16e-12 68.2
MS.gene91583.t1 MTR_3g435290 32.520 123 78 3 337 458 1 119 1.71e-11 61.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene91583.t1 AT3G29670 39.829 467 249 14 4 458 5 451 1.49e-98 303
MS.gene91583.t1 AT3G29635 40.181 443 240 12 24 456 27 454 2.63e-95 295
MS.gene91583.t1 AT5G39090 38.147 464 251 12 5 456 8 447 8.38e-93 288
MS.gene91583.t1 AT5G39050 38.347 472 258 14 3 456 11 467 4.09e-90 282
MS.gene91583.t1 AT5G61160 36.441 472 261 12 3 458 4 452 4.95e-90 281
MS.gene91583.t1 AT5G39080 36.774 465 264 12 4 452 7 457 9.36e-90 281
MS.gene91583.t1 AT3G29680 39.408 439 238 14 24 452 23 443 1.28e-86 272
MS.gene91583.t1 AT3G29590 36.325 468 254 12 4 456 10 448 6.81e-86 270
MS.gene91583.t1 AT1G03940 35.294 476 266 15 3 456 9 464 1.68e-80 257
MS.gene91583.t1 AT1G03495 34.167 360 201 11 1 340 1 344 1.86e-56 191
MS.gene91583.t1 AT3G29720 35.885 209 110 6 99 299 26 218 5.33e-28 111
MS.gene91583.t1 AT5G23940 25.751 466 272 16 3 436 4 427 2.17e-23 102
MS.gene91583.t1 AT2G19070 25.893 448 269 17 39 456 37 451 4.39e-22 99.0
MS.gene91583.t1 AT5G48930 23.542 463 291 19 9 448 4 426 1.61e-18 87.8
MS.gene91583.t1 AT1G31490 24.433 397 251 13 23 409 26 383 2.14e-17 84.7
MS.gene91583.t1 AT5G67160 23.855 415 256 10 10 409 13 382 6.88e-17 83.2
MS.gene91583.t1 AT5G67150 24.586 423 262 14 10 412 13 398 1.23e-16 82.4
MS.gene91583.t1 AT3G47170 26.502 283 170 10 62 328 70 330 1.79e-16 82.0
MS.gene91583.t1 AT3G29690 32.192 146 91 4 312 455 38 177 1.14e-15 75.5
MS.gene91583.t1 AT5G38130 25.721 416 249 17 29 425 52 426 1.96e-15 78.6
MS.gene91583.t1 AT3G48720 23.944 355 232 13 62 409 61 384 4.29e-14 74.3
MS.gene91583.t1 AT4G31910 24.207 347 219 12 42 368 46 368 1.06e-13 73.2
MS.gene91583.t1 AT5G07850 23.810 378 244 11 50 413 58 405 6.26e-13 70.9
MS.gene91583.t1 AT1G28680 23.226 310 201 7 62 364 62 341 1.11e-12 70.1
MS.gene91583.t1 AT1G24430 21.946 442 274 13 26 450 29 416 1.29e-12 69.7
MS.gene91583.t1 AT1G28680 23.875 289 184 6 62 343 62 321 1.35e-12 69.7

Find 77 sgRNAs with CRISPR-Local

Find 92 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAAAGGGATTGTTTGAGTT+TGG 0.214942 7.4:-84593716 None:intergenic
GTTAAAACAAGTGAGTTATT+TGG 0.218562 7.4:+84594546 MS.gene91583:CDS
AGTGAGTTATTTGGAGAAAA+TGG 0.218894 7.4:+84594555 MS.gene91583:CDS
TGGTCTTCATGGTTACTTAA+AGG 0.232873 7.4:+84594654 MS.gene91583:CDS
GCTGATTTCAATCATTTATC+TGG 0.253026 7.4:+84593859 MS.gene91583:CDS
GTTCCAGAAGATTCATTTAG+AGG 0.266808 7.4:+84594258 MS.gene91583:CDS
GAAACCATTTCAACTTTCTT+TGG 0.266966 7.4:-84594762 None:intergenic
GTGCTATAAACCTCAAATTT+AGG 0.277190 7.4:-84594720 None:intergenic
TTACTTTCTTTGACATACTA+TGG 0.279036 7.4:+84593614 MS.gene91583:CDS
CCAATTGAAAATCCGTAGTT+TGG 0.297340 7.4:-84593982 None:intergenic
CCAAACCATTAAGCTTCTAT+TGG 0.298491 7.4:-84594226 None:intergenic
AACAACCAATAGAAGCTTAA+TGG 0.299594 7.4:+84594221 MS.gene91583:CDS
ATTATTTCAATTATCTCGTT+TGG 0.307673 7.4:+84594281 MS.gene91583:CDS
CAATAGAAGCTTAATGGTTT+GGG 0.310409 7.4:+84594227 MS.gene91583:CDS
AGGCAAAATATTTGAGTGAT+TGG 0.318923 7.4:+84594184 MS.gene91583:CDS
CCAATAGAAGCTTAATGGTT+TGG 0.323690 7.4:+84594226 MS.gene91583:CDS
AATCCTCTAAATGAATCTTC+TGG 0.330893 7.4:-84594261 None:intergenic
TTTGGATATTGAAAAGCTTA+AGG 0.336799 7.4:+84594299 MS.gene91583:CDS
TGTCTTTCTGATTGTAGAAA+TGG 0.347109 7.4:+84594807 MS.gene91583:CDS
GCATACTTTGGAAATTGTAT+TGG 0.347808 7.4:+84594507 MS.gene91583:CDS
GAGGTTTATAGCACTGATTT+TGG 0.354064 7.4:+84594729 MS.gene91583:CDS
TATTGAAAAGCTTAAGGAAT+TGG 0.359072 7.4:+84594305 MS.gene91583:CDS
GAAAGGGATTGTTTGAGTTT+GGG 0.362666 7.4:-84593715 None:intergenic
AATGGTGACGGTGTTGAGAT+AGG 0.363782 7.4:+84594825 MS.gene91583:CDS
ACATGAACAAGCTTCTGTTT+TGG 0.364822 7.4:+84593939 MS.gene91583:CDS
GAGCTGAAAATTGGTCTTCA+TGG 0.367514 7.4:+84594643 MS.gene91583:CDS
TCATGTGAAATATTCAAGTT+AGG 0.378648 7.4:-84593922 None:intergenic
ATTGGTTTGTGAGAATCATT+AGG 0.380290 7.4:-84593784 None:intergenic
CCTTTGATGAATTTGATGAT+TGG 0.382399 7.4:-84593802 None:intergenic
CCGATTCCTGCAGCATACTT+TGG 0.386341 7.4:+84594495 MS.gene91583:CDS
TAGAAGAAAATTCTTTGAAC+AGG 0.387117 7.4:-84593649 None:intergenic
ATTGGTAGTGTCAAAACAAA+AGG 0.388087 7.4:+84594323 MS.gene91583:CDS
ACTTCACTTGTCAACATTTG+TGG 0.389452 7.4:+84594368 MS.gene91583:CDS
TAGGTTTGAATATCGATTGC+AGG 0.392519 7.4:+84594457 MS.gene91583:CDS
TGCTGGTTCACCTAAATTTG+AGG 0.418931 7.4:+84594710 MS.gene91583:CDS
TGTTGAATGGAGCTGAAAAT+TGG 0.427307 7.4:+84594634 MS.gene91583:CDS
AGTGAGAAAGTGTAAGAGAA+AGG 0.431882 7.4:-84593732 None:intergenic
ATTGTTTGAGTTTGGGAAGA+AGG 0.432191 7.4:-84593708 None:intergenic
TGAAGTGTTGAGTGAAGCTT+TGG 0.434464 7.4:+84594593 MS.gene91583:CDS
AAAACCAAAGAAAGTTGAAA+TGG 0.434697 7.4:+84594758 MS.gene91583:CDS
CCAAAGTATGCTGCAGGAAT+CGG 0.437026 7.4:-84594495 None:intergenic
ATTGCTGATGTTAAAACAAT+TGG 0.438756 7.4:+84594684 MS.gene91583:CDS
AGTATGTCAAAGAAAGTAAG+AGG 0.444791 7.4:-84593610 None:intergenic
TTAAAAGATGGTGTGTTGAA+TGG 0.453841 7.4:+84594621 MS.gene91583:CDS
ATTACATTTCTATCATAGAA+AGG 0.455442 7.4:-84594141 None:intergenic
GTGAGAAAGTGTAAGAGAAA+GGG 0.464182 7.4:-84593731 None:intergenic
TGGTATCTATTGCTTATGCA+TGG 0.464673 7.4:+84594388 MS.gene91583:CDS
TATTGAAGAAAAGTGAGGTT+TGG 0.471729 7.4:-84593684 None:intergenic
AAGAAAATTCTTTGAACAGG+TGG 0.476348 7.4:-84593646 None:intergenic
GCTTTGGAATCTTTAAAAGA+TGG 0.477917 7.4:+84594609 MS.gene91583:CDS
CAAGGATCCAAATGAATTTG+AGG 0.481282 7.4:+84594164 MS.gene91583:CDS
TTGTTTGAGTTTGGGAAGAA+GGG 0.491749 7.4:-84593707 None:intergenic
GTTAAAACAATTGGTACTGC+TGG 0.495742 7.4:+84594693 MS.gene91583:CDS
TGTCAAAACAAAAGGGTACT+AGG 0.501108 7.4:+84594331 MS.gene91583:CDS
TTTGCTTCGCTCTTTGTCAA+AGG 0.503257 7.4:+84594879 MS.gene91583:CDS
GGTATTTCTACTTGTGAAGA+TGG 0.504447 7.4:-84593571 None:intergenic
ATGGTTTCAATAGATAGAAC+CGG 0.508512 7.4:+84594777 MS.gene91583:CDS
AAAGAAAGTAAGAGGAAGTG+AGG 0.516885 7.4:-84593602 None:intergenic
TTGAGTGATTGGTTAAAGCA+AGG 0.525666 7.4:+84594195 MS.gene91583:CDS
CTATGATAGAAATGTAATCA+AGG 0.525898 7.4:+84594146 MS.gene91583:CDS
CAATTTCCAAAGTATGCTGC+AGG 0.526227 7.4:-84594501 None:intergenic
TCTACAATCAGAAAGACAAA+AGG 0.534606 7.4:-84594802 None:intergenic
AGAGGAAGTGAGGTTTCTGA+AGG 0.537876 7.4:-84593592 None:intergenic
AGAAAATTCTTTGAACAGGT+GGG 0.549747 7.4:-84593645 None:intergenic
CCAATCATCAAATTCATCAA+AGG 0.560308 7.4:+84593802 MS.gene91583:CDS
TGGAGAAAATGGACTAATTG+TGG 0.575913 7.4:+84594566 MS.gene91583:CDS
TTGGTAGTGTCAAAACAAAA+GGG 0.579006 7.4:+84594324 MS.gene91583:CDS
GGTATCTATTGCTTATGCAT+GGG 0.580397 7.4:+84594389 MS.gene91583:CDS
CAAATGAGATGACCCAAAAG+AGG 0.588902 7.4:-84593760 None:intergenic
AAGGGTATTGAAGAAAAGTG+AGG 0.604994 7.4:-84593689 None:intergenic
AACTCATGTGGCAAACAAAG+TGG 0.610535 7.4:-84594114 None:intergenic
AGTGATTGGTTAAAGCAAGG+TGG 0.623091 7.4:+84594198 MS.gene91583:CDS
ATCAGCATGAGATTCAGCTA+TGG 0.626225 7.4:-84593842 None:intergenic
ATCAGAAAGACAAAAGGCAC+CGG 0.631989 7.4:-84594796 None:intergenic
AAGAAAAGTGAGGTTTGGTG+TGG 0.632754 7.4:-84593679 None:intergenic
TCTGATTGTAGAAATGGTGA+CGG 0.649470 7.4:+84594813 MS.gene91583:CDS
TAGAAAGGACAAAACTCATG+TGG 0.652604 7.4:-84594126 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTACATTTCTATCATAGAA+AGG - chr7.4:84594144-84594163 None:intergenic 20.0%
!! ATTATTTCAATTATCTCGTT+TGG + chr7.4:84594281-84594300 MS.gene91583:CDS 20.0%
!!! AACTTCTTTTATCAAATCTT+GGG + chr7.4:84594044-84594063 MS.gene91583:CDS 20.0%
! AAAACCAAAGAAAGTTGAAA+TGG + chr7.4:84594758-84594777 MS.gene91583:CDS 25.0%
! ATTGCTGATGTTAAAACAAT+TGG + chr7.4:84594684-84594703 MS.gene91583:CDS 25.0%
! CTATGATAGAAATGTAATCA+AGG + chr7.4:84594146-84594165 MS.gene91583:CDS 25.0%
! GTTAAAACAAGTGAGTTATT+TGG + chr7.4:84594546-84594565 MS.gene91583:CDS 25.0%
! TAGAAGAAAATTCTTTGAAC+AGG - chr7.4:84593652-84593671 None:intergenic 25.0%
! TATTGAAAAGCTTAAGGAAT+TGG + chr7.4:84594305-84594324 MS.gene91583:CDS 25.0%
! TTACTTTCTTTGACATACTA+TGG + chr7.4:84593614-84593633 MS.gene91583:CDS 25.0%
! TTTGGATATTGAAAAGCTTA+AGG + chr7.4:84594299-84594318 MS.gene91583:CDS 25.0%
!! CAACTTCTTTTATCAAATCT+TGG + chr7.4:84594043-84594062 MS.gene91583:CDS 25.0%
!! TATTTTGCCTCAAATTCATT+TGG - chr7.4:84594174-84594193 None:intergenic 25.0%
!! TCATGTGAAATATTCAAGTT+AGG - chr7.4:84593925-84593944 None:intergenic 25.0%
!!! AATTGTTTTAACATCAGCAA+TGG - chr7.4:84594685-84594704 None:intergenic 25.0%
!!! CATTTTTAAGCTTTCTACAT+AGG - chr7.4:84594074-84594093 None:intergenic 25.0%
AAATCCGTAGTTTGGAAAAA+TGG - chr7.4:84593977-84593996 None:intergenic 30.0%
AACAACCAATAGAAGCTTAA+TGG + chr7.4:84594221-84594240 MS.gene91583:CDS 30.0%
AAGAAAATTCTTTGAACAGG+TGG - chr7.4:84593649-84593668 None:intergenic 30.0%
AATCCTCTAAATGAATCTTC+TGG - chr7.4:84594264-84594283 None:intergenic 30.0%
AGAAAATTCTTTGAACAGGT+GGG - chr7.4:84593648-84593667 None:intergenic 30.0%
AGGCAAAATATTTGAGTGAT+TGG + chr7.4:84594184-84594203 MS.gene91583:CDS 30.0%
AGTATGTCAAAGAAAGTAAG+AGG - chr7.4:84593613-84593632 None:intergenic 30.0%
AGTGAGTTATTTGGAGAAAA+TGG + chr7.4:84594555-84594574 MS.gene91583:CDS 30.0%
ATGGTTTCAATAGATAGAAC+CGG + chr7.4:84594777-84594796 MS.gene91583:CDS 30.0%
CAATAGAAGCTTAATGGTTT+GGG + chr7.4:84594227-84594246 MS.gene91583:CDS 30.0%
CCAATCATCAAATTCATCAA+AGG + chr7.4:84593802-84593821 MS.gene91583:CDS 30.0%
GAAACCATTTCAACTTTCTT+TGG - chr7.4:84594765-84594784 None:intergenic 30.0%
GAGAACAAAAATGCTTTGAT+AGG + chr7.4:84594438-84594457 MS.gene91583:CDS 30.0%
GTGCTATAAACCTCAAATTT+AGG - chr7.4:84594723-84594742 None:intergenic 30.0%
TATTGAAGAAAAGTGAGGTT+TGG - chr7.4:84593687-84593706 None:intergenic 30.0%
TCTACAATCAGAAAGACAAA+AGG - chr7.4:84594805-84594824 None:intergenic 30.0%
TGTCTTTCTGATTGTAGAAA+TGG + chr7.4:84594807-84594826 MS.gene91583:CDS 30.0%
TGTGTCTAACAAAAAAGCAA+TGG + chr7.4:84594851-84594870 MS.gene91583:CDS 30.0%
TTAAAAGATGGTGTGTTGAA+TGG + chr7.4:84594621-84594640 MS.gene91583:CDS 30.0%
! CCTTTGATGAATTTGATGAT+TGG - chr7.4:84593805-84593824 None:intergenic 30.0%
! GCATACTTTGGAAATTGTAT+TGG + chr7.4:84594507-84594526 MS.gene91583:CDS 30.0%
! GCTGATTTCAATCATTTATC+TGG + chr7.4:84593859-84593878 MS.gene91583:CDS 30.0%
!! ATTGGTAGTGTCAAAACAAA+AGG + chr7.4:84594323-84594342 MS.gene91583:CDS 30.0%
!! ATTGGTTTGTGAGAATCATT+AGG - chr7.4:84593787-84593806 None:intergenic 30.0%
!! GCTTTGGAATCTTTAAAAGA+TGG + chr7.4:84594609-84594628 MS.gene91583:CDS 30.0%
!! GTTACCATTTTTCCAAACTA+CGG + chr7.4:84593970-84593989 MS.gene91583:CDS 30.0%
!! TCTCACTTTTATCCTCTTTT+GGG + chr7.4:84593748-84593767 MS.gene91583:CDS 30.0%
!! TTCTCACTTTTATCCTCTTT+TGG + chr7.4:84593747-84593766 MS.gene91583:CDS 30.0%
!! TTGGTAGTGTCAAAACAAAA+GGG + chr7.4:84594324-84594343 MS.gene91583:CDS 30.0%
AAAGAAAGTAAGAGGAAGTG+AGG - chr7.4:84593605-84593624 None:intergenic 35.0%
ACTTCACTTGTCAACATTTG+TGG + chr7.4:84594368-84594387 MS.gene91583:CDS 35.0%
CAAGGATCCAAATGAATTTG+AGG + chr7.4:84594164-84594183 MS.gene91583:CDS 35.0%
CCAAACCATTAAGCTTCTAT+TGG - chr7.4:84594229-84594248 None:intergenic 35.0%
CCAATAGAAGCTTAATGGTT+TGG + chr7.4:84594226-84594245 MS.gene91583:CDS 35.0%
CCAATTGAAAATCCGTAGTT+TGG - chr7.4:84593985-84594004 None:intergenic 35.0%
GGTATCTATTGCTTATGCAT+GGG + chr7.4:84594389-84594408 MS.gene91583:CDS 35.0%
GTTAAAACAATTGGTACTGC+TGG + chr7.4:84594693-84594712 MS.gene91583:CDS 35.0%
GTTCCAGAAGATTCATTTAG+AGG + chr7.4:84594258-84594277 MS.gene91583:CDS 35.0%
TAGAAAGGACAAAACTCATG+TGG - chr7.4:84594129-84594148 None:intergenic 35.0%
TCTGATTGTAGAAATGGTGA+CGG + chr7.4:84594813-84594832 MS.gene91583:CDS 35.0%
TGGTATCTATTGCTTATGCA+TGG + chr7.4:84594388-84594407 MS.gene91583:CDS 35.0%
TGGTCTTCATGGTTACTTAA+AGG + chr7.4:84594654-84594673 MS.gene91583:CDS 35.0%
TGTTGAATGGAGCTGAAAAT+TGG + chr7.4:84594634-84594653 MS.gene91583:CDS 35.0%
! ACATGAACAAGCTTCTGTTT+TGG + chr7.4:84593939-84593958 MS.gene91583:CDS 35.0%
! AGAAAGGGATTGTTTGAGTT+TGG - chr7.4:84593719-84593738 None:intergenic 35.0%
! AGTGAGAAAGTGTAAGAGAA+AGG - chr7.4:84593735-84593754 None:intergenic 35.0%
! ATTGTTTGAGTTTGGGAAGA+AGG - chr7.4:84593711-84593730 None:intergenic 35.0%
! CCAAACTACGGATTTTCAAT+TGG + chr7.4:84593982-84594001 MS.gene91583:CDS 35.0%
! GAAAGGGATTGTTTGAGTTT+GGG - chr7.4:84593718-84593737 None:intergenic 35.0%
! GGTATTTCTACTTGTGAAGA+TGG - chr7.4:84593574-84593593 None:intergenic 35.0%
! GTGAGAAAGTGTAAGAGAAA+GGG - chr7.4:84593734-84593753 None:intergenic 35.0%
! TAGGTTTGAATATCGATTGC+AGG + chr7.4:84594457-84594476 MS.gene91583:CDS 35.0%
! TTGAGTGATTGGTTAAAGCA+AGG + chr7.4:84594195-84594214 MS.gene91583:CDS 35.0%
! TTGTTTGAGTTTGGGAAGAA+GGG - chr7.4:84593710-84593729 None:intergenic 35.0%
!! AAGGGTATTGAAGAAAAGTG+AGG - chr7.4:84593692-84593711 None:intergenic 35.0%
!! TGGAGAAAATGGACTAATTG+TGG + chr7.4:84594566-84594585 MS.gene91583:CDS 35.0%
!! TGTCAAAACAAAAGGGTACT+AGG + chr7.4:84594331-84594350 MS.gene91583:CDS 35.0%
!!! GAGGTTTATAGCACTGATTT+TGG + chr7.4:84594729-84594748 MS.gene91583:CDS 35.0%
!!! TATAGCACTGATTTTGGTTG+TGG + chr7.4:84594735-84594754 MS.gene91583:CDS 35.0%
!!! TCACATCATGCTGTTTTAGA+TGG + chr7.4:84594012-84594031 MS.gene91583:CDS 35.0%
AACTCATGTGGCAAACAAAG+TGG - chr7.4:84594117-84594136 None:intergenic 40.0%
ATCAGCATGAGATTCAGCTA+TGG - chr7.4:84593845-84593864 None:intergenic 40.0%
CAAATGAGATGACCCAAAAG+AGG - chr7.4:84593763-84593782 None:intergenic 40.0%
CAATTTCCAAAGTATGCTGC+AGG - chr7.4:84594504-84594523 None:intergenic 40.0%
TTTGCTTCGCTCTTTGTCAA+AGG + chr7.4:84594879-84594898 MS.gene91583:CDS 40.0%
! AGTGATTGGTTAAAGCAAGG+TGG + chr7.4:84594198-84594217 MS.gene91583:CDS 40.0%
! ATCAGAAAGACAAAAGGCAC+CGG - chr7.4:84594799-84594818 None:intergenic 40.0%
!! AAGAAAAGTGAGGTTTGGTG+TGG - chr7.4:84593682-84593701 None:intergenic 40.0%
!! CTCTTTTGGGTCATCTCATT+TGG + chr7.4:84593761-84593780 MS.gene91583:CDS 40.0%
!! GAGCTGAAAATTGGTCTTCA+TGG + chr7.4:84594643-84594662 MS.gene91583:CDS 40.0%
!! TGAAGTGTTGAGTGAAGCTT+TGG + chr7.4:84594593-84594612 MS.gene91583:CDS 40.0%
!! TGCTGGTTCACCTAAATTTG+AGG + chr7.4:84594710-84594729 MS.gene91583:CDS 40.0%
AGAGGAAGTGAGGTTTCTGA+AGG - chr7.4:84593595-84593614 None:intergenic 45.0%
CCAAAGTATGCTGCAGGAAT+CGG - chr7.4:84594498-84594517 None:intergenic 45.0%
!! AATGGTGACGGTGTTGAGAT+AGG + chr7.4:84594825-84594844 MS.gene91583:CDS 45.0%
CCGATTCCTGCAGCATACTT+TGG + chr7.4:84594495-84594514 MS.gene91583:CDS 50.0%


Chromosome Type Strat End Strand Name
chr7.4 gene 84593538 84594914 84593538 ID=MS.gene91583
chr7.4 mRNA 84593538 84594914 84593538 ID=MS.gene91583.t1;Parent=MS.gene91583
chr7.4 exon 84593538 84594914 84593538 ID=MS.gene91583.t1.exon1;Parent=MS.gene91583.t1
chr7.4 CDS 84593538 84594914 84593538 ID=cds.MS.gene91583.t1;Parent=MS.gene91583.t1
Gene Sequence

>MS.gene91583

ATGACGAAAATCATAGAAATTTTCAATGTAGCACCATCTTCACAAGTAGAAATACCTTCAGAAACCTCACTTCCTCTTACTTTCTTTGACATACTATGGTTAAGATTCCCACCTGTTCAAAGAATTTTCTTCTATGAGTTTCCACACCAAACCTCACTTTTCTTCAATACCCTTCTTCCCAAACTCAAACAATCCCTTTCTCTTACACTTTCTCACTTTTATCCTCTTTTGGGTCATCTCATTTGGCCTAATGATTCTCACAAACCAATCATCAAATTCATCAAAGGAAACACTCTTTCACTTACCATAGCTGAATCTCATGCTGATTTCAATCATTTATCTGGTAAGAATCTTTCTGAAGCTACTCAAATTCATGATCTTTTACCTAACTTGAATATTTCACATGAACAAGCTTCTGTTTTGGCTCTTCAAGTTACCATTTTTCCAAACTACGGATTTTCAATTGGTATTGCTTCACATCATGCTGTTTTAGATGGTAAAATTTCAACTTCTTTTATCAAATCTTGGGCTTACCTATGTAGAAAGCTTAAAAATGAAGTATCTGAATTAGAAACACCACTTTGTTTGCCACATGAGTTTTGTCCTTTCTATGATAGAAATGTAATCAAGGATCCAAATGAATTTGAGGCAAAATATTTGAGTGATTGGTTAAAGCAAGGTGGAACAACCAATAGAAGCTTAATGGTTTGGGATTTTCAAGTTCCAGAAGATTCATTTAGAGGATTATTTCAATTATCTCGTTTGGATATTGAAAAGCTTAAGGAATTGGTAGTGTCAAAACAAAAGGGTACTAGGAATGAGAATAAAAAACTTCACTTGTCAACATTTGTGGTATCTATTGCTTATGCATGGGTATGTAGAATAAAAGCAGAGAAAATTGAGAACAAAAATGCTTTGATAGGTTTGAATATCGATTGCAGGAATCGTTTAGAAGCACCGATTCCTGCAGCATACTTTGGAAATTGTATTGGATTAAGACTTGCATTTGTTAAAACAAGTGAGTTATTTGGAGAAAATGGACTAATTGTGGCTGTTGAAGTGTTGAGTGAAGCTTTGGAATCTTTAAAAGATGGTGTGTTGAATGGAGCTGAAAATTGGTCTTCATGGTTACTTAAAGGTCTTGCCATTGCTGATGTTAAAACAATTGGTACTGCTGGTTCACCTAAATTTGAGGTTTATAGCACTGATTTTGGTTGTGGAAAACCAAAGAAAGTTGAAATGGTTTCAATAGATAGAACCGGTGCCTTTTGTCTTTCTGATTGTAGAAATGGTGACGGTGTTGAGATAGGTTTTGTGTCTAACAAAAAAGCAATGGAAGCTTTTGCTTCGCTCTTTGTCAAAGGCATTGCATCTTGA
Protein sequence

>MS.gene91583.t1

MTKIIEIFNVAPSSQVEIPSETSLPLTFFDILWLRFPPVQRIFFYEFPHQTSLFFNTLLPKLKQSLSLTLSHFYPLLGHLIWPNDSHKPIIKFIKGNTLSLTIAESHADFNHLSGKNLSEATQIHDLLPNLNISHEQASVLALQVTIFPNYGFSIGIASHHAVLDGKISTSFIKSWAYLCRKLKNEVSELETPLCLPHEFCPFYDRNVIKDPNEFEAKYLSDWLKQGGTTNRSLMVWDFQVPEDSFRGLFQLSRLDIEKLKELVVSKQKGTRNENKKLHLSTFVVSIAYAWVCRIKAEKIENKNALIGLNIDCRNRLEAPIPAAYFGNCIGLRLAFVKTSELFGENGLIVAVEVLSEALESLKDGVLNGAENWSSWLLKGLAIADVKTIGTAGSPKFEVYSTDFGCGKPKKVEMVSIDRTGAFCLSDCRNGDGVEIGFVSNKKAMEAFASLFVKGIAS