Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91606.t1 | XP_003621484.1 | 94.4 | 357 | 20 | 0 | 1 | 357 | 1 | 357 | 3.50E-193 | 684.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91606.t1 | O22309 | 79.8 | 357 | 67 | 1 | 1 | 357 | 1 | 352 | 1.9e-168 | 593.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91606.t1 | Q06YR3 | 94.4 | 357 | 20 | 0 | 1 | 357 | 1 | 357 | 2.5e-193 | 684.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05548 | MS.gene91606 | 0.80025 | 1.57E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91606.t1 | MTR_7g014510 | 94.398 | 357 | 20 | 0 | 1 | 357 | 1 | 357 | 0.0 | 695 |
| MS.gene91606.t1 | MTR_7g014570 | 80.672 | 357 | 64 | 1 | 1 | 357 | 1 | 352 | 0.0 | 615 |
| MS.gene91606.t1 | MTR_1g076940 | 56.510 | 361 | 153 | 3 | 1 | 357 | 1 | 361 | 4.35e-148 | 422 |
| MS.gene91606.t1 | MTR_4g088345 | 53.482 | 359 | 162 | 3 | 1 | 357 | 1 | 356 | 2.15e-135 | 390 |
| MS.gene91606.t1 | MTR_7g024500 | 51.558 | 353 | 163 | 3 | 4 | 355 | 3 | 348 | 4.83e-130 | 376 |
| MS.gene91606.t1 | MTR_7g024520 | 50.142 | 353 | 168 | 3 | 4 | 355 | 3 | 348 | 4.67e-128 | 371 |
| MS.gene91606.t1 | MTR_4g088340 | 52.083 | 336 | 156 | 3 | 24 | 357 | 1 | 333 | 3.18e-125 | 363 |
| MS.gene91606.t1 | MTR_4g033015 | 49.311 | 363 | 178 | 4 | 1 | 357 | 1 | 363 | 7.21e-116 | 340 |
| MS.gene91606.t1 | MTR_4g088200 | 47.645 | 361 | 185 | 3 | 1 | 357 | 1 | 361 | 1.19e-115 | 340 |
| MS.gene91606.t1 | MTR_4g033200 | 49.311 | 363 | 178 | 4 | 1 | 357 | 1 | 363 | 1.51e-115 | 340 |
| MS.gene91606.t1 | MTR_4g079160 | 45.143 | 350 | 185 | 4 | 11 | 357 | 10 | 355 | 6.48e-111 | 328 |
| MS.gene91606.t1 | MTR_4g088190 | 48.901 | 364 | 179 | 4 | 1 | 357 | 1 | 364 | 1.34e-109 | 325 |
| MS.gene91606.t1 | MTR_5g074580 | 46.591 | 352 | 180 | 5 | 11 | 357 | 12 | 360 | 3.88e-109 | 323 |
| MS.gene91606.t1 | MTR_5g074600 | 44.886 | 352 | 186 | 5 | 11 | 357 | 11 | 359 | 4.42e-109 | 323 |
| MS.gene91606.t1 | MTR_4g033150 | 47.802 | 364 | 182 | 5 | 1 | 357 | 1 | 363 | 5.43e-109 | 323 |
| MS.gene91606.t1 | MTR_5g074680 | 43.840 | 349 | 192 | 4 | 11 | 356 | 12 | 359 | 3.19e-105 | 313 |
| MS.gene91606.t1 | MTR_4g033170 | 48.596 | 356 | 175 | 4 | 6 | 357 | 6 | 357 | 5.94e-105 | 312 |
| MS.gene91606.t1 | MTR_4g033085 | 48.596 | 356 | 175 | 4 | 6 | 357 | 6 | 357 | 3.66e-100 | 300 |
| MS.gene91606.t1 | MTR_5g074540 | 38.889 | 360 | 198 | 4 | 1 | 357 | 1 | 341 | 6.69e-93 | 281 |
| MS.gene91606.t1 | MTR_5g074610 | 40.449 | 356 | 179 | 4 | 5 | 357 | 1 | 326 | 1.12e-92 | 280 |
| MS.gene91606.t1 | MTR_1g076930 | 55.042 | 238 | 103 | 3 | 24 | 258 | 1 | 237 | 4.76e-85 | 258 |
| MS.gene91606.t1 | MTR_0794s0020 | 46.800 | 250 | 126 | 4 | 1 | 244 | 1 | 249 | 9.72e-72 | 224 |
| MS.gene91606.t1 | MTR_0017s0100 | 34.483 | 377 | 218 | 9 | 1 | 357 | 1 | 368 | 4.69e-66 | 213 |
| MS.gene91606.t1 | MTR_4g038440 | 34.574 | 376 | 219 | 8 | 1 | 357 | 1 | 368 | 3.90e-62 | 203 |
| MS.gene91606.t1 | MTR_0079s0070 | 36.257 | 342 | 202 | 7 | 24 | 357 | 1 | 334 | 3.45e-61 | 199 |
| MS.gene91606.t1 | MTR_3g083620 | 34.024 | 338 | 212 | 7 | 20 | 353 | 27 | 357 | 4.79e-60 | 197 |
| MS.gene91606.t1 | MTR_3g092900 | 30.612 | 343 | 225 | 7 | 10 | 343 | 11 | 349 | 1.53e-45 | 159 |
| MS.gene91606.t1 | MTR_7g011900 | 30.816 | 331 | 215 | 7 | 33 | 352 | 41 | 368 | 5.65e-45 | 158 |
| MS.gene91606.t1 | MTR_1g096310 | 31.269 | 323 | 206 | 6 | 33 | 344 | 41 | 358 | 4.57e-44 | 156 |
| MS.gene91606.t1 | MTR_5g098170 | 32.722 | 327 | 198 | 8 | 31 | 344 | 33 | 350 | 1.29e-43 | 154 |
| MS.gene91606.t1 | MTR_8g024160 | 30.769 | 312 | 190 | 8 | 56 | 356 | 31 | 327 | 1.59e-42 | 150 |
| MS.gene91606.t1 | MTR_7g012040 | 28.313 | 332 | 226 | 7 | 33 | 356 | 40 | 367 | 2.26e-42 | 151 |
| MS.gene91606.t1 | MTR_7g118300 | 30.675 | 326 | 215 | 6 | 31 | 349 | 47 | 368 | 1.17e-41 | 149 |
| MS.gene91606.t1 | MTR_7g012070 | 28.107 | 338 | 225 | 8 | 33 | 356 | 41 | 374 | 5.40e-41 | 148 |
| MS.gene91606.t1 | MTR_7g012090 | 28.107 | 338 | 225 | 8 | 33 | 356 | 41 | 374 | 6.63e-40 | 145 |
| MS.gene91606.t1 | MTR_7g118320 | 28.402 | 338 | 225 | 6 | 30 | 356 | 30 | 361 | 7.95e-40 | 144 |
| MS.gene91606.t1 | MTR_1g036460 | 30.357 | 336 | 218 | 8 | 33 | 356 | 38 | 369 | 2.13e-39 | 143 |
| MS.gene91606.t1 | MTR_0591s0010 | 29.375 | 320 | 207 | 8 | 31 | 338 | 46 | 358 | 2.14e-39 | 144 |
| MS.gene91606.t1 | MTR_1g036490 | 29.545 | 352 | 200 | 8 | 33 | 356 | 38 | 369 | 2.41e-39 | 143 |
| MS.gene91606.t1 | MTR_7g011990 | 32.479 | 234 | 151 | 4 | 126 | 356 | 137 | 366 | 4.32e-39 | 142 |
| MS.gene91606.t1 | MTR_8g068690 | 28.750 | 320 | 211 | 6 | 31 | 339 | 45 | 358 | 8.88e-39 | 142 |
| MS.gene91606.t1 | MTR_7g012020 | 26.205 | 332 | 234 | 5 | 33 | 356 | 40 | 368 | 2.15e-37 | 138 |
| MS.gene91606.t1 | MTR_8g068750 | 26.791 | 321 | 222 | 6 | 31 | 342 | 46 | 362 | 9.42e-37 | 136 |
| MS.gene91606.t1 | MTR_8g068870 | 26.970 | 330 | 224 | 6 | 24 | 342 | 25 | 348 | 3.61e-36 | 135 |
| MS.gene91606.t1 | MTR_3g021430 | 28.750 | 320 | 212 | 7 | 33 | 343 | 30 | 342 | 1.35e-35 | 133 |
| MS.gene91606.t1 | MTR_2g072790 | 29.688 | 320 | 210 | 6 | 31 | 342 | 27 | 339 | 1.60e-35 | 133 |
| MS.gene91606.t1 | MTR_2g055940 | 27.152 | 302 | 209 | 5 | 63 | 356 | 64 | 362 | 1.70e-35 | 133 |
| MS.gene91606.t1 | MTR_6g078850 | 31.325 | 249 | 160 | 6 | 99 | 342 | 126 | 368 | 1.76e-35 | 135 |
| MS.gene91606.t1 | MTR_3g021440 | 30.154 | 325 | 201 | 9 | 33 | 343 | 43 | 355 | 5.94e-35 | 131 |
| MS.gene91606.t1 | MTR_1g036510 | 28.972 | 321 | 181 | 8 | 62 | 356 | 84 | 383 | 1.04e-34 | 131 |
| MS.gene91606.t1 | MTR_4g038440 | 31.159 | 276 | 166 | 6 | 1 | 258 | 1 | 270 | 1.78e-34 | 128 |
| MS.gene91606.t1 | MTR_3g096050 | 29.254 | 335 | 219 | 9 | 32 | 356 | 31 | 357 | 9.56e-34 | 128 |
| MS.gene91606.t1 | MTR_8g068570 | 35.160 | 219 | 117 | 8 | 123 | 324 | 107 | 317 | 3.17e-30 | 117 |
| MS.gene91606.t1 | MTR_3g096070 | 31.153 | 321 | 180 | 13 | 32 | 342 | 31 | 320 | 9.54e-30 | 117 |
| MS.gene91606.t1 | MTR_8g068730 | 26.250 | 320 | 185 | 8 | 31 | 338 | 46 | 326 | 9.89e-28 | 111 |
| MS.gene91606.t1 | MTR_7g012020 | 25.847 | 236 | 169 | 2 | 33 | 262 | 40 | 275 | 2.49e-22 | 95.9 |
| MS.gene91606.t1 | MTR_8g068600 | 27.074 | 229 | 157 | 5 | 38 | 258 | 27 | 253 | 8.43e-22 | 94.0 |
| MS.gene91606.t1 | MTR_8g068690 | 25.210 | 238 | 170 | 3 | 31 | 261 | 45 | 281 | 3.49e-20 | 89.7 |
| MS.gene91606.t1 | MTR_3g096050 | 29.958 | 237 | 154 | 7 | 32 | 261 | 31 | 262 | 8.77e-19 | 85.5 |
| MS.gene91606.t1 | MTR_1g050220 | 32.000 | 150 | 88 | 3 | 193 | 341 | 151 | 287 | 9.10e-19 | 85.9 |
| MS.gene91606.t1 | MTR_8g068620 | 36.937 | 111 | 68 | 2 | 152 | 261 | 4 | 113 | 3.87e-18 | 79.7 |
| MS.gene91606.t1 | MTR_8g068740 | 24.400 | 250 | 147 | 5 | 31 | 272 | 46 | 261 | 8.57e-17 | 80.1 |
| MS.gene91606.t1 | MTR_1g036510 | 28.182 | 220 | 117 | 5 | 62 | 258 | 84 | 285 | 1.64e-16 | 79.3 |
| MS.gene91606.t1 | MTR_7g012020 | 24.390 | 205 | 149 | 2 | 33 | 231 | 40 | 244 | 1.25e-14 | 73.2 |
| MS.gene91606.t1 | MTR_4g025570 | 37.500 | 96 | 55 | 4 | 260 | 353 | 122 | 214 | 1.44e-11 | 63.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91606.t1 | AT4G35150 | 33.239 | 355 | 179 | 10 | 15 | 356 | 14 | 323 | 4.56e-54 | 181 |
| MS.gene91606.t1 | AT4G35160 | 34.072 | 361 | 211 | 10 | 15 | 356 | 28 | 380 | 2.03e-50 | 173 |
| MS.gene91606.t1 | AT5G54160 | 30.748 | 361 | 223 | 11 | 10 | 355 | 11 | 359 | 1.19e-48 | 168 |
| MS.gene91606.t1 | AT1G77520 | 34.052 | 232 | 138 | 4 | 135 | 356 | 154 | 380 | 6.25e-36 | 134 |
| MS.gene91606.t1 | AT1G33030 | 31.563 | 339 | 209 | 13 | 31 | 356 | 21 | 349 | 2.15e-35 | 132 |
| MS.gene91606.t1 | AT3G53140 | 29.630 | 324 | 210 | 7 | 31 | 342 | 27 | 344 | 2.67e-35 | 132 |
| MS.gene91606.t1 | AT1G51990 | 28.136 | 295 | 198 | 6 | 71 | 357 | 74 | 362 | 1.75e-34 | 130 |
| MS.gene91606.t1 | AT1G51990 | 30.065 | 306 | 178 | 10 | 71 | 357 | 74 | 362 | 2.89e-34 | 129 |
| MS.gene91606.t1 | AT5G53810 | 30.636 | 346 | 212 | 11 | 31 | 356 | 40 | 377 | 1.81e-30 | 119 |
| MS.gene91606.t1 | AT5G37170 | 33.663 | 202 | 117 | 7 | 164 | 356 | 40 | 233 | 1.04e-28 | 111 |
| MS.gene91606.t1 | AT5G37170 | 33.663 | 202 | 117 | 7 | 164 | 356 | 140 | 333 | 2.29e-28 | 113 |
| MS.gene91606.t1 | AT1G77530 | 32.609 | 230 | 144 | 3 | 135 | 356 | 154 | 380 | 4.51e-28 | 113 |
| MS.gene91606.t1 | AT1G63140 | 26.989 | 352 | 230 | 8 | 24 | 356 | 37 | 380 | 1.59e-26 | 108 |
| MS.gene91606.t1 | AT5G37170 | 33.679 | 193 | 111 | 7 | 173 | 356 | 1 | 185 | 2.17e-26 | 104 |
| MS.gene91606.t1 | AT1G63140 | 27.762 | 353 | 226 | 9 | 24 | 356 | 57 | 400 | 2.17e-26 | 108 |
| MS.gene91606.t1 | AT1G62900 | 31.707 | 205 | 134 | 3 | 155 | 356 | 3 | 204 | 6.51e-25 | 100 |
| MS.gene91606.t1 | AT1G76790 | 31.602 | 231 | 140 | 5 | 116 | 338 | 126 | 346 | 1.82e-24 | 103 |
| MS.gene91606.t1 | AT1G21100 | 29.060 | 234 | 152 | 5 | 116 | 343 | 134 | 359 | 9.70e-24 | 101 |
| MS.gene91606.t1 | AT1G21130 | 28.632 | 234 | 153 | 5 | 116 | 343 | 134 | 359 | 1.67e-23 | 100 |
| MS.gene91606.t1 | AT1G21110 | 25.387 | 323 | 200 | 9 | 29 | 339 | 62 | 355 | 1.75e-23 | 100 |
| MS.gene91606.t1 | AT1G21120 | 25.076 | 327 | 204 | 9 | 29 | 343 | 62 | 359 | 1.34e-22 | 97.8 |
| MS.gene91606.t1 | AT1G21120 | 24.771 | 327 | 205 | 8 | 29 | 343 | 110 | 407 | 3.15e-22 | 97.4 |
| MS.gene91606.t1 | AT1G33030 | 28.511 | 235 | 158 | 7 | 31 | 258 | 21 | 252 | 2.75e-17 | 81.3 |
| MS.gene91606.t1 | AT1G33030 | 28.511 | 235 | 158 | 7 | 31 | 258 | 21 | 252 | 5.55e-17 | 80.5 |
Find 48 sgRNAs with CRISPR-Local
Find 89 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAATTTAGGTTATGATTTA+TGG | 0.105649 | 7.4:-85035844 | MS.gene91606:CDS |
| ACTCTATTTGCTGTCAATTT+AGG | 0.138679 | 7.4:-85035857 | MS.gene91606:CDS |
| CCATTATTGTGGATAATATT+TGG | 0.147159 | 7.4:+85036166 | None:intergenic |
| CAATGCCAAATTAATCATTT+TGG | 0.154805 | 7.4:+85035760 | None:intergenic |
| GCTTCAGAGCTTCTTGTTAA+AGG | 0.174797 | 7.4:-85035980 | MS.gene91606:CDS |
| TGAATCCAAAATGATTAATT+TGG | 0.178795 | 7.4:-85035765 | MS.gene91606:CDS |
| ACTAAGTTTGAAAGAGTAAT+TGG | 0.200330 | 7.4:+85036139 | None:intergenic |
| GTTAGAATTTCATGTGTTAA+TGG | 0.205151 | 7.4:-85034769 | MS.gene91606:CDS |
| TTGAACAATCTATTATATTC+AGG | 0.315369 | 7.4:+85035803 | None:intergenic |
| CAATTTAGGTTATGATTTAT+GGG | 0.326232 | 7.4:-85035843 | MS.gene91606:CDS |
| AGCAAAACAGCATCAGCTTT+AGG | 0.327775 | 7.4:+85035542 | None:intergenic |
| CCAAATATTATCCACAATAA+TGG | 0.343354 | 7.4:-85036166 | MS.gene91606:CDS |
| CATAAATTCTCTACAACCTT+TGG | 0.344220 | 7.4:+85035614 | None:intergenic |
| TTGGAATCAATTGTTGATGT+TGG | 0.374339 | 7.4:-85035710 | MS.gene91606:CDS |
| AACACAACACATTTCAAGTT+AGG | 0.376071 | 7.4:+85035644 | None:intergenic |
| TTTACATGATTGGACTGATA+AGG | 0.394656 | 7.4:-85034929 | MS.gene91606:CDS |
| GTTGATGTTGGTGGTGGAAA+TGG | 0.397477 | 7.4:-85035698 | MS.gene91606:CDS |
| GTTAAAGAAATGGGTTTATG+AGG | 0.399104 | 7.4:-85035888 | MS.gene91606:CDS |
| TGAAATTTGTTTAGCTCCAA+TGG | 0.404978 | 7.4:-85035954 | MS.gene91606:CDS |
| ATTTCATAAGTTAAAGAAAT+GGG | 0.421608 | 7.4:-85035897 | MS.gene91606:CDS |
| ACGTTATCGACTTTGGTTGA+TGG | 0.424903 | 7.4:+85036100 | None:intergenic |
| AAGAGAGAAATGAGGAAGAA+TGG | 0.436880 | 7.4:-85034744 | MS.gene91606:CDS |
| TAGATTCTATGTCTCTGAAA+TGG | 0.439367 | 7.4:-85036207 | MS.gene91606:CDS |
| AAAAGTGATTGTGATAGATA+TGG | 0.441921 | 7.4:-85034848 | MS.gene91606:CDS |
| CATTTCATAAGTTAAAGAAA+TGG | 0.443086 | 7.4:-85035898 | MS.gene91606:CDS |
| AAAGAAGCTGTTACAAGTGA+TGG | 0.450313 | 7.4:-85034880 | MS.gene91606:CDS |
| GTAGCTTTATTTGAGTAAGT+TGG | 0.477459 | 7.4:+85034800 | None:intergenic |
| GAATCAATTGTTGATGTTGG+TGG | 0.480697 | 7.4:-85035707 | MS.gene91606:CDS |
| CCCCACCAACATAAGTCAAA+TGG | 0.486807 | 7.4:+85035582 | None:intergenic |
| TGAAATGAAGCTAAAAGTGT+TGG | 0.494184 | 7.4:+85035914 | None:intergenic |
| ACGCTGCACGTTATCGACTT+TGG | 0.496595 | 7.4:+85036093 | None:intergenic |
| AAGGTTGTAGAGAATTTATG+TGG | 0.511990 | 7.4:-85035611 | MS.gene91606:CDS |
| CCATTTGACTTATGTTGGTG+GGG | 0.514873 | 7.4:-85035582 | MS.gene91606:CDS |
| GTTACAAGTGATGGGAAAAG+AGG | 0.521898 | 7.4:-85034871 | MS.gene91606:CDS |
| ACCATTTGACTTATGTTGGT+GGG | 0.522853 | 7.4:-85035583 | MS.gene91606:CDS |
| TAATTGGTTTGCCATTATTG+TGG | 0.529109 | 7.4:+85036155 | None:intergenic |
| TCAATTGTTGATGTTGGTGG+TGG | 0.533748 | 7.4:-85035704 | MS.gene91606:CDS |
| GGTGGTGGAAATGGAACAAC+TGG | 0.536758 | 7.4:-85035689 | MS.gene91606:CDS |
| AGTAACCATTTGACTTATGT+TGG | 0.538517 | 7.4:-85035587 | MS.gene91606:CDS |
| TCAAGAACACACTCAACCAT+TGG | 0.540381 | 7.4:+85035938 | None:intergenic |
| AAGAAGCTGTTACAAGTGAT+GGG | 0.545739 | 7.4:-85034879 | MS.gene91606:CDS |
| CAGAGACATAGAATCTATGA+AGG | 0.547617 | 7.4:+85036213 | None:intergenic |
| TAGATTGTTCAATGATGCAA+TGG | 0.569948 | 7.4:-85035792 | MS.gene91606:CDS |
| CAAAGAATCCATTGTGTGCG+AGG | 0.572485 | 7.4:+85036059 | None:intergenic |
| AACCATTTGACTTATGTTGG+TGG | 0.576467 | 7.4:-85035584 | MS.gene91606:CDS |
| TAATGGAAAAGAGAGAAATG+AGG | 0.609693 | 7.4:-85034752 | MS.gene91606:CDS |
| TGTTGTGTTTGATCGTCCAA+AGG | 0.630603 | 7.4:-85035630 | MS.gene91606:CDS |
| ATGCGTTACCTCGCACACAA+TGG | 0.640920 | 7.4:-85036067 | MS.gene91606:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTAAATTATGCTTT+TGG | + | chr7.4:85035604-85035623 | None:intergenic | 10.0% |
| !!! | GAAAATTTTTAAATGATAAA+TGG | - | chr7.4:85035624-85035643 | MS.gene91606:CDS | 10.0% |
| !!! | TGTTTTAAAATTCTATTTTT+GGG | - | chr7.4:85035471-85035490 | MS.gene91606:intron | 10.0% |
| !!! | TTGTTTTAAAATTCTATTTT+TGG | - | chr7.4:85035470-85035489 | MS.gene91606:intron | 10.0% |
| !! | ATTTCATAAGTTAAAGAAAT+GGG | - | chr7.4:85035049-85035068 | MS.gene91606:intron | 15.0% |
| !!! | GTTTTAAAATTCTATTTTTG+GGG | - | chr7.4:85035472-85035491 | MS.gene91606:intron | 15.0% |
| !! | CATTTCATAAGTTAAAGAAA+TGG | - | chr7.4:85035048-85035067 | MS.gene91606:intron | 20.0% |
| !! | CATTTCATACAAAGTTATTA+AGG | - | chr7.4:85035947-85035966 | MS.gene91606:CDS | 20.0% |
| !! | TGAATCCAAAATGATTAATT+TGG | - | chr7.4:85035181-85035200 | MS.gene91606:intron | 20.0% |
| !! | TTAGGATTGAAAATTCTAAA+GGG | + | chr7.4:85035498-85035517 | None:intergenic | 20.0% |
| !! | TTGAACAATCTATTATATTC+AGG | + | chr7.4:85035146-85035165 | None:intergenic | 20.0% |
| !!! | CAATTTAGGTTATGATTTAT+GGG | - | chr7.4:85035103-85035122 | MS.gene91606:intron | 20.0% |
| !!! | TACAAAATATCTTCTTTTAC+TGG | - | chr7.4:85036258-85036277 | MS.gene91606:CDS | 20.0% |
| !!! | TCAATTTAGGTTATGATTTA+TGG | - | chr7.4:85035102-85035121 | MS.gene91606:intron | 20.0% |
| !!! | TTTAGGATTGAAAATTCTAA+AGG | + | chr7.4:85035499-85035518 | None:intergenic | 20.0% |
| !!! | TTTTGCTATACAACAATTTT+AGG | + | chr7.4:85035516-85035535 | None:intergenic | 20.0% |
| ! | AAAAGTGATTGTGATAGATA+TGG | - | chr7.4:85036098-85036117 | MS.gene91606:CDS | 25.0% |
| ! | ACTAAGTTTGAAAGAGTAAT+TGG | + | chr7.4:85034810-85034829 | None:intergenic | 25.0% |
| ! | CCAAATATTATCCACAATAA+TGG | - | chr7.4:85034780-85034799 | MS.gene91606:CDS | 25.0% |
| ! | CCATTATTGTGGATAATATT+TGG | + | chr7.4:85034783-85034802 | None:intergenic | 25.0% |
| ! | GTTAGAATTTCATGTGTTAA+TGG | - | chr7.4:85036177-85036196 | MS.gene91606:CDS | 25.0% |
| ! | TACATCTAAGAATTAAACTC+AGG | - | chr7.4:85035796-85035815 | MS.gene91606:CDS | 25.0% |
| !! | AAGAAGATATTTTGTAGTCT+TGG | + | chr7.4:85036254-85036273 | None:intergenic | 25.0% |
| !! | AGATGTAACAATATTTTCTC+AGG | + | chr7.4:85035783-85035802 | None:intergenic | 25.0% |
| !! | CAATGCCAAATTAATCATTT+TGG | + | chr7.4:85035189-85035208 | None:intergenic | 25.0% |
| !! | TAAAAATTTCACTTGGTTTG+CGG | + | chr7.4:85034680-85034699 | None:intergenic | 25.0% |
| !!! | TGTGCTTTAAAAATTTCACT+TGG | + | chr7.4:85034687-85034706 | None:intergenic | 25.0% |
| !!! | TTTATTTTGTGTTAATCCTG+CGG | - | chr7.4:85035703-85035722 | MS.gene91606:CDS | 25.0% |
| AAAAAGCTCTTTATAGAAGC+AGG | - | chr7.4:85036225-85036244 | MS.gene91606:CDS | 30.0% | |
| AAAGGAAAAGAAAGCAATAG+AGG | + | chr7.4:85035988-85036007 | None:intergenic | 30.0% | |
| AAGGTTGTAGAGAATTTATG+TGG | - | chr7.4:85035335-85035354 | MS.gene91606:intron | 30.0% | |
| CATAAATTCTCTACAACCTT+TGG | + | chr7.4:85035335-85035354 | None:intergenic | 30.0% | |
| TAATGGAAAAGAGAGAAATG+AGG | - | chr7.4:85036194-85036213 | MS.gene91606:CDS | 30.0% | |
| TAGATTGTTCAATGATGCAA+TGG | - | chr7.4:85035154-85035173 | MS.gene91606:intron | 30.0% | |
| TGTATAGCAAAATCATCATC+AGG | - | chr7.4:85035524-85035543 | MS.gene91606:intron | 30.0% | |
| TTGGAATCAATTGTTGATGT+TGG | - | chr7.4:85035236-85035255 | MS.gene91606:intron | 30.0% | |
| TTTACATGATTGGACTGATA+AGG | - | chr7.4:85036017-85036036 | MS.gene91606:CDS | 30.0% | |
| ! | AGATTGCAATTTTGTGTTTG+AGG | - | chr7.4:85035211-85035230 | MS.gene91606:intron | 30.0% |
| ! | AGTAACCATTTGACTTATGT+TGG | - | chr7.4:85035359-85035378 | MS.gene91606:intron | 30.0% |
| ! | ATTGCAATTTTGTGTTTGAG+GGG | - | chr7.4:85035213-85035232 | MS.gene91606:intron | 30.0% |
| ! | GATTGCAATTTTGTGTTTGA+GGG | - | chr7.4:85035212-85035231 | MS.gene91606:intron | 30.0% |
| ! | GTTAAAGAAATGGGTTTATG+AGG | - | chr7.4:85035058-85035077 | MS.gene91606:intron | 30.0% |
| ! | TAGATTCTATGTCTCTGAAA+TGG | - | chr7.4:85034739-85034758 | MS.gene91606:CDS | 30.0% |
| ! | TGAAATGAAGCTAAAAGTGT+TGG | + | chr7.4:85035035-85035054 | None:intergenic | 30.0% |
| ! | TGAAATTTGTTTAGCTCCAA+TGG | - | chr7.4:85034992-85035011 | MS.gene91606:intron | 30.0% |
| !! | AACACAACACATTTCAAGTT+AGG | + | chr7.4:85035305-85035324 | None:intergenic | 30.0% |
| !! | ACTCTATTTGCTGTCAATTT+AGG | - | chr7.4:85035089-85035108 | MS.gene91606:intron | 30.0% |
| !! | GTAGCTTTATTTGAGTAAGT+TGG | + | chr7.4:85036149-85036168 | None:intergenic | 30.0% |
| !! | TAATTGGTTTGCCATTATTG+TGG | + | chr7.4:85034794-85034813 | None:intergenic | 30.0% |
| AAAGAAGCTGTTACAAGTGA+TGG | - | chr7.4:85036066-85036085 | MS.gene91606:CDS | 35.0% | |
| AAGAAGCTGTTACAAGTGAT+GGG | - | chr7.4:85036067-85036086 | MS.gene91606:CDS | 35.0% | |
| AAGAGAGAAATGAGGAAGAA+TGG | - | chr7.4:85036202-85036221 | MS.gene91606:CDS | 35.0% | |
| CAGAGACATAGAATCTATGA+AGG | + | chr7.4:85034736-85034755 | None:intergenic | 35.0% | |
| GAATCAATTGTTGATGTTGG+TGG | - | chr7.4:85035239-85035258 | MS.gene91606:intron | 35.0% | |
| TAGTGACTAAGCAATTGTTC+AGG | + | chr7.4:85035826-85035845 | None:intergenic | 35.0% | |
| TGATTGCAAAAACATGAGCA+AGG | - | chr7.4:85035577-85035596 | MS.gene91606:CDS | 35.0% | |
| TTTATCTCCCGATGAAACTT+CGG | + | chr7.4:85035755-85035774 | None:intergenic | 35.0% | |
| ! | AACCATTTGACTTATGTTGG+TGG | - | chr7.4:85035362-85035381 | MS.gene91606:intron | 35.0% |
| ! | ACCATTTGACTTATGTTGGT+GGG | - | chr7.4:85035363-85035382 | MS.gene91606:intron | 35.0% |
| ! | ATTGCTTTCTTTTCCTTTGC+AGG | - | chr7.4:85035990-85036009 | MS.gene91606:CDS | 35.0% |
| AGCAAAACAGCATCAGCTTT+AGG | + | chr7.4:85035407-85035426 | None:intergenic | 40.0% | |
| CTCGTAATCCGAAGTTTCAT+CGG | - | chr7.4:85035744-85035763 | MS.gene91606:CDS | 40.0% | |
| GATGAAACTTCGGATTACGA+GGG | + | chr7.4:85035745-85035764 | None:intergenic | 40.0% | |
| GCTTCAGAGCTTCTTGTTAA+AGG | - | chr7.4:85034966-85034985 | MS.gene91606:intron | 40.0% | |
| TCAAGAACACACTCAACCAT+TGG | + | chr7.4:85035011-85035030 | None:intergenic | 40.0% | |
| TCGTAATCCGAAGTTTCATC+GGG | - | chr7.4:85035745-85035764 | MS.gene91606:CDS | 40.0% | |
| TGTTAATCCTGCGGTCTTTA+GGG | - | chr7.4:85035712-85035731 | MS.gene91606:CDS | 40.0% | |
| TGTTGTGTTTGATCGTCCAA+AGG | - | chr7.4:85035316-85035335 | MS.gene91606:intron | 40.0% | |
| ! | CAATTTTGTGTTTGAGGGGT+TGG | - | chr7.4:85035217-85035236 | MS.gene91606:intron | 40.0% |
| ! | CCATTTGACTTATGTTGGTG+GGG | - | chr7.4:85035364-85035383 | MS.gene91606:intron | 40.0% |
| ! | GTTACAAGTGATGGGAAAAG+AGG | - | chr7.4:85036075-85036094 | MS.gene91606:CDS | 40.0% |
| ! | TCAATTGTTGATGTTGGTGG+TGG | - | chr7.4:85035242-85035261 | MS.gene91606:intron | 40.0% |
| !! | ACGTTATCGACTTTGGTTGA+TGG | + | chr7.4:85034849-85034868 | None:intergenic | 40.0% |
| !!! | AGCTGATGCTGTTTTGCTTA+AGG | - | chr7.4:85035409-85035428 | MS.gene91606:intron | 40.0% |
| CAAAGAATCCATTGTGTGCG+AGG | + | chr7.4:85034890-85034909 | None:intergenic | 45.0% | |
| CCCCACCAACATAAGTCAAA+TGG | + | chr7.4:85035367-85035386 | None:intergenic | 45.0% | |
| CGATGAAACTTCGGATTACG+AGG | + | chr7.4:85035746-85035765 | None:intergenic | 45.0% | |
| GTGTTAATCCTGCGGTCTTT+AGG | - | chr7.4:85035711-85035730 | MS.gene91606:CDS | 45.0% | |
| TCATGTAAAACCGCCTGCAA+AGG | + | chr7.4:85036006-85036025 | None:intergenic | 45.0% | |
| ! | GCTTTCTTTTCCTTTGCAGG+CGG | - | chr7.4:85035993-85036012 | MS.gene91606:CDS | 45.0% |
| ! | TGCAGGCGGTTTTACATGAT+TGG | - | chr7.4:85036007-85036026 | MS.gene91606:CDS | 45.0% |
| !! | GTTGATGTTGGTGGTGGAAA+TGG | - | chr7.4:85035248-85035267 | MS.gene91606:intron | 45.0% |
| !!! | AAAATTTTTAAATGATAAAT+GGG | - | chr7.4:85035625-85035644 | MS.gene91606:CDS | 5.0% |
| ATGCGTTACCTCGCACACAA+TGG | - | chr7.4:85034879-85034898 | MS.gene91606:CDS | 50.0% | |
| ! | CCTGCGGTCTTTAGGGAAAA+GGG | - | chr7.4:85035719-85035738 | MS.gene91606:CDS | 50.0% |
| ! | TCCTGCGGTCTTTAGGGAAA+AGG | - | chr7.4:85035718-85035737 | MS.gene91606:CDS | 50.0% |
| !! | ACGCTGCACGTTATCGACTT+TGG | + | chr7.4:85034856-85034875 | None:intergenic | 50.0% |
| !! | GGTGGTGGAAATGGAACAAC+TGG | - | chr7.4:85035257-85035276 | MS.gene91606:intron | 50.0% |
| ! | CCCTTTTCCCTAAAGACCGC+AGG | + | chr7.4:85035722-85035741 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.4 | gene | 85034657 | 85036311 | 85034657 | ID=MS.gene91606 |
| chr7.4 | mRNA | 85034657 | 85036311 | 85034657 | ID=MS.gene91606.t1;Parent=MS.gene91606 |
| chr7.4 | exon | 85035538 | 85036311 | 85035538 | ID=MS.gene91606.t1.exon1;Parent=MS.gene91606.t1 |
| chr7.4 | CDS | 85035538 | 85036311 | 85035538 | ID=cds.MS.gene91606.t1;Parent=MS.gene91606.t1 |
| chr7.4 | exon | 85034657 | 85034956 | 85034657 | ID=MS.gene91606.t1.exon2;Parent=MS.gene91606.t1 |
| chr7.4 | CDS | 85034657 | 85034956 | 85034657 | ID=cds.MS.gene91606.t1;Parent=MS.gene91606.t1 |
| Gene Sequence |
| Protein sequence |
