Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91900.t1 | XP_003613699.1 | 97.6 | 297 | 7 | 0 | 4 | 300 | 10 | 306 | 9.10E-153 | 549.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91900.t1 | B6ZJZ9 | 85.9 | 297 | 42 | 0 | 4 | 300 | 10 | 306 | 3.3e-135 | 482.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91900.t1 | G7KCK0 | 97.6 | 297 | 7 | 0 | 4 | 300 | 10 | 306 | 6.6e-153 | 549.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050479 | MS.gene91900 | 0.809102 | 2.23E-50 | -1.69E-46 |
| MS.gene050547 | MS.gene91900 | 0.806301 | 8.79E-50 | -1.69E-46 |
| MS.gene06092 | MS.gene91900 | -0.801057 | 1.08E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91900.t1 | MTR_5g039730 | 97.643 | 297 | 7 | 0 | 4 | 300 | 10 | 306 | 0.0 | 586 |
| MS.gene91900.t1 | MTR_7g039810 | 97.200 | 250 | 7 | 0 | 4 | 253 | 10 | 259 | 1.06e-178 | 494 |
| MS.gene91900.t1 | MTR_7g445250 | 96.800 | 250 | 8 | 0 | 4 | 253 | 10 | 259 | 6.30e-178 | 492 |
| MS.gene91900.t1 | MTR_1g105410 | 69.231 | 299 | 90 | 2 | 4 | 300 | 10 | 308 | 4.02e-149 | 422 |
| MS.gene91900.t1 | MTR_5g081910 | 27.389 | 314 | 181 | 8 | 18 | 295 | 21 | 323 | 5.30e-24 | 100 |
| MS.gene91900.t1 | MTR_7g445270 | 100.000 | 39 | 0 | 0 | 4 | 42 | 10 | 48 | 3.83e-20 | 82.4 |
| MS.gene91900.t1 | MTR_5g081910 | 26.840 | 231 | 130 | 5 | 93 | 295 | 30 | 249 | 1.03e-17 | 81.6 |
| MS.gene91900.t1 | MTR_8g076760 | 25.887 | 282 | 188 | 9 | 19 | 287 | 28 | 301 | 8.38e-17 | 79.7 |
| MS.gene91900.t1 | MTR_1g036280 | 23.123 | 333 | 185 | 6 | 20 | 287 | 25 | 351 | 2.42e-16 | 79.3 |
| MS.gene91900.t1 | MTR_8g096050 | 26.897 | 290 | 183 | 10 | 7 | 287 | 229 | 498 | 1.09e-15 | 77.8 |
| MS.gene91900.t1 | MTR_7g109135 | 25.177 | 282 | 192 | 5 | 3 | 279 | 20 | 287 | 1.27e-14 | 73.6 |
| MS.gene91900.t1 | MTR_7g109135 | 25.773 | 291 | 186 | 8 | 3 | 279 | 20 | 294 | 2.09e-14 | 73.2 |
| MS.gene91900.t1 | MTR_6g034515 | 28.571 | 294 | 180 | 13 | 19 | 304 | 81 | 352 | 1.15e-11 | 65.5 |
| MS.gene91900.t1 | MTR_1g087840 | 24.549 | 277 | 179 | 8 | 17 | 279 | 31 | 291 | 1.99e-11 | 64.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene91900.t1 | AT3G05290 | 71.906 | 299 | 82 | 1 | 4 | 300 | 10 | 308 | 1.99e-157 | 443 |
| MS.gene91900.t1 | AT5G27520 | 71.477 | 298 | 83 | 1 | 4 | 299 | 12 | 309 | 5.68e-152 | 429 |
| MS.gene91900.t1 | AT2G39970 | 27.723 | 303 | 176 | 7 | 20 | 287 | 23 | 317 | 2.38e-24 | 101 |
| MS.gene91900.t1 | AT5G66380 | 25.753 | 299 | 196 | 9 | 4 | 287 | 9 | 296 | 1.30e-19 | 87.8 |
| MS.gene91900.t1 | AT1G34065 | 24.739 | 287 | 169 | 10 | 7 | 286 | 77 | 323 | 7.58e-12 | 65.9 |
| MS.gene91900.t1 | AT1G34065 | 24.739 | 287 | 169 | 10 | 7 | 286 | 84 | 330 | 9.27e-12 | 65.5 |
| MS.gene91900.t1 | AT1G25380 | 27.599 | 279 | 169 | 10 | 17 | 279 | 33 | 294 | 2.79e-11 | 64.3 |
| MS.gene91900.t1 | AT1G25380 | 27.599 | 279 | 169 | 10 | 17 | 279 | 33 | 294 | 2.79e-11 | 64.3 |
| MS.gene91900.t1 | AT5G42130 | 27.612 | 268 | 169 | 9 | 19 | 279 | 132 | 381 | 6.53e-11 | 63.2 |
Find 77 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCATCGCTGTCTGCGTTTA+TGG | 0.113898 | 5.3:-27841868 | MS.gene91900:CDS |
| TCCTTATACTTGCAATTAAA+AGG | 0.200481 | 5.3:-27841483 | MS.gene91900:intron |
| TTACTTTAAAAGACTGTATC+TGG | 0.233981 | 5.3:-27842959 | MS.gene91900:CDS |
| TCAAGCTGAGGCACGTTCTA+AGG | 0.234200 | 5.3:-27844650 | MS.gene91900:CDS |
| CACCTCTAACCCTGCAATTC+AGG | 0.243289 | 5.3:-27842087 | MS.gene91900:intron |
| TTGTTAATTGCTGCTGCTGC+TGG | 0.271660 | 5.3:-27842898 | MS.gene91900:CDS |
| AGCTTGATACTTTGTCTTGC+AGG | 0.275313 | 5.3:+27844666 | None:intergenic |
| TCACAGTTTGTCTACTTCTA+TGG | 0.283929 | 5.3:-27842988 | MS.gene91900:CDS |
| CCAATGTTCTCTGCGGAATA+TGG | 0.298856 | 5.3:-27841621 | MS.gene91900:CDS |
| TCCTTGGCAGAAGCCACTTC+TGG | 0.302678 | 5.3:-27844736 | MS.gene91900:intron |
| ATGGAAACAGGAGGGCATAT+TGG | 0.346257 | 5.3:-27841602 | MS.gene91900:CDS |
| GCTTGAGCTACCTGAATTGC+AGG | 0.374609 | 5.3:+27842077 | None:intergenic |
| TGGAAACAGGAGGGCATATT+GGG | 0.376453 | 5.3:-27841601 | MS.gene91900:CDS |
| GGAATCTCTCTGATGTGTTA+TGG | 0.381215 | 5.3:-27843083 | MS.gene91900:CDS |
| CTTTCCCTTTACCAAGGCCT+TGG | 0.383290 | 5.3:-27843036 | MS.gene91900:CDS |
| TGTTAATTGCTGCTGCTGCT+GGG | 0.386082 | 5.3:-27842897 | MS.gene91900:CDS |
| GAATCTCTCTGATGTGTTAT+GGG | 0.387384 | 5.3:-27843082 | MS.gene91900:CDS |
| CACTCCATGTGCCTTCTGTA+AGG | 0.389324 | 5.3:+27842144 | None:intergenic |
| GTCTAACATATCCTGCTATC+AGG | 0.400419 | 5.3:-27841806 | MS.gene91900:intron |
| TACCTGAATTGCAGGGTTAG+AGG | 0.402089 | 5.3:+27842085 | None:intergenic |
| TACTCCTTATCAATGAGCTT+TGG | 0.409104 | 5.3:-27845573 | None:intergenic |
| TGTTCCAAGGCCTTGGTAAA+GGG | 0.410240 | 5.3:+27843032 | None:intergenic |
| AGATACTCCTTTCTCAGCTA+TGG | 0.412205 | 5.3:+27841893 | None:intergenic |
| AAAAGATCTCTGCTACTACT+TGG | 0.421196 | 5.3:-27841507 | MS.gene91900:CDS |
| CAAGTTTGCTCTTGTTCCAA+TGG | 0.441171 | 5.3:+27842918 | None:intergenic |
| CCCTGGATACAGCCTCTTCA+AGG | 0.449791 | 5.3:-27842211 | MS.gene91900:CDS |
| GTCCCTTTGGAAAGGCTAAA+GGG | 0.451978 | 5.3:-27842178 | MS.gene91900:CDS |
| TTGTTCCAAGGCCTTGGTAA+AGG | 0.452626 | 5.3:+27843031 | None:intergenic |
| TCCTTGAAGAGGCTGTATCC+AGG | 0.461040 | 5.3:+27842210 | None:intergenic |
| ATAAACGCAGACAGCGATGC+TGG | 0.471939 | 5.3:+27841870 | None:intergenic |
| AGTCCCTTTGGAAAGGCTAA+AGG | 0.474955 | 5.3:-27842179 | MS.gene91900:CDS |
| AGCATTGCTCTTGATGATCA+AGG | 0.485915 | 5.3:-27841530 | MS.gene91900:CDS |
| TCTCTGCGGAATATGGAAAC+AGG | 0.492285 | 5.3:-27841614 | MS.gene91900:CDS |
| AAAAGTGGGTATAAATCCAT+TGG | 0.494876 | 5.3:-27842934 | MS.gene91900:CDS |
| AGGATGCAGACAAGTCCCTT+TGG | 0.495911 | 5.3:-27842191 | MS.gene91900:CDS |
| GTAGACAAACTGTGAAAAGA+AGG | 0.507274 | 5.3:+27842996 | None:intergenic |
| ACTCCATGTGCCTTCTGTAA+GGG | 0.511405 | 5.3:+27842145 | None:intergenic |
| TGTGCTAAGCAATGATCCTA+TGG | 0.528077 | 5.3:+27844711 | None:intergenic |
| AAAGATCTCTGCTACTACTT+GGG | 0.528411 | 5.3:-27841506 | MS.gene91900:CDS |
| ACATGGAGTGATGCATTTGA+TGG | 0.529163 | 5.3:-27842131 | MS.gene91900:CDS |
| CCATATTCCGCAGAGAACAT+TGG | 0.534435 | 5.3:+27841621 | None:intergenic |
| TTTGATTATTCGCCAGTACT+CGG | 0.535788 | 5.3:+27841916 | None:intergenic |
| AATCAAACCATAGCTGAGAA+AGG | 0.535904 | 5.3:-27841900 | MS.gene91900:CDS |
| AGCCCTTTAGCCTTTCCAAA+GGG | 0.538176 | 5.3:+27842176 | None:intergenic |
| GAAGCCACTTCTGGAGCCAT+AGG | 0.538567 | 5.3:-27844727 | MS.gene91900:CDS |
| CCTTGAAGAGGCTGTATCCA+GGG | 0.540930 | 5.3:+27842211 | None:intergenic |
| GATAGCAGGATATGTTAGAC+AGG | 0.545301 | 5.3:+27841809 | None:intergenic |
| TGAAACTGCACCTAAAAGAA+AGG | 0.545604 | 5.3:+27841845 | None:intergenic |
| ACAATTATATACCTGATAGC+AGG | 0.548603 | 5.3:+27841795 | None:intergenic |
| GTTAATTGCTGCTGCTGCTG+GGG | 0.551615 | 5.3:-27842896 | MS.gene91900:CDS |
| CCATTTCGTTAGAGCTGAGA+CGG | 0.559911 | 5.3:-27841364 | MS.gene91900:intron |
| CAAGCTGAGGCACGTTCTAA+GGG | 0.562422 | 5.3:-27844649 | MS.gene91900:CDS |
| TGATCCTATGGCTCCAGAAG+TGG | 0.584074 | 5.3:+27844723 | None:intergenic |
| TAGCCCTTTAGCCTTTCCAA+AGG | 0.584771 | 5.3:+27842175 | None:intergenic |
| CGTCACTGCCATCACAACTC+AGG | 0.587603 | 5.3:-27842872 | MS.gene91900:intron |
| TTTGTCTTGCAGGTATCAAG+AGG | 0.588173 | 5.3:+27844676 | None:intergenic |
| CTGAGTTGTGATGGCAGTGA+CGG | 0.590782 | 5.3:+27842873 | None:intergenic |
| CAGATTCTTTCCCTTTACCA+AGG | 0.593467 | 5.3:-27843042 | MS.gene91900:CDS |
| ACTTGTCTGCATCCTTGAAG+AGG | 0.599190 | 5.3:+27842199 | None:intergenic |
| CTACCTCACCTGAGTTGTGA+TGG | 0.602227 | 5.3:+27842864 | None:intergenic |
| AGGGTTAGAGGTGAGCATCA+AGG | 0.605239 | 5.3:+27842097 | None:intergenic |
| TGTTCTACATCAACAAGCGA+AGG | 0.608992 | 5.3:+27841308 | None:intergenic |
| CATAATTCAAGCTGAAGACA+CGG | 0.611095 | 5.3:-27841689 | MS.gene91900:CDS |
| GCAGACAAGTCCCTTTGGAA+AGG | 0.616563 | 5.3:-27842186 | MS.gene91900:CDS |
| TGAGCATCAAGGAAATGCTA+AGG | 0.623451 | 5.3:+27842108 | None:intergenic |
| CTTGAGCTACCTGAATTGCA+GGG | 0.625040 | 5.3:+27842078 | None:intergenic |
| TTGTCTTGCAGGTATCAAGA+GGG | 0.627769 | 5.3:+27844677 | None:intergenic |
| GAACCCTTACAGAAGGCACA+TGG | 0.633064 | 5.3:-27842148 | MS.gene91900:CDS |
| CTACTGAGAACCCTTACAGA+AGG | 0.636823 | 5.3:-27842155 | MS.gene91900:CDS |
| CTGCGGAATATGGAAACAGG+AGG | 0.641129 | 5.3:-27841611 | MS.gene91900:CDS |
| GTTCTACATCAACAAGCGAA+GGG | 0.654780 | 5.3:+27841309 | None:intergenic |
| CTTGAAGAGGCTGTATCCAG+GGG | 0.660319 | 5.3:+27842212 | None:intergenic |
| GGTAAAGGGAAAGAATCTGA+CGG | 0.666841 | 5.3:+27843046 | None:intergenic |
| TGCGGAATATGGAAACAGGA+GGG | 0.672014 | 5.3:-27841610 | MS.gene91900:CDS |
| TCTCTCTGATGTGTTATGGG+AGG | 0.673157 | 5.3:-27843079 | MS.gene91900:CDS |
| CAAGACAAAGTATCAAGCTG+AGG | 0.676971 | 5.3:-27844662 | MS.gene91900:CDS |
| ACTGTGTCCAATGTTCTCTG+CGG | 0.712853 | 5.3:-27841628 | MS.gene91900:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATATTATTATATATA+AGG | - | chr5.3:27841432-27841451 | MS.gene91900:intron | 0.0% |
| !! | ATTTATACTTGAAAATAATT+TGG | - | chr5.3:27843264-27843283 | MS.gene91900:intron | 10.0% |
| !!! | TTTTATCAACAAAAAAAAAA+AGG | + | chr5.3:27844045-27844064 | None:intergenic | 10.0% |
| !!! | TTTTCTTAAAAATAAATGAT+TGG | - | chr5.3:27841464-27841483 | MS.gene91900:intron | 10.0% |
| !! | AAAAAAAAAAACACAAATGA+CGG | + | chr5.3:27844846-27844865 | None:intergenic | 15.0% |
| !! | AAAAAAAAATTCTTAAACAG+AGG | + | chr5.3:27842544-27842563 | None:intergenic | 15.0% |
| !! | TATATTCCAATATGTTTATA+AGG | - | chr5.3:27841359-27841378 | MS.gene91900:intron | 15.0% |
| !!! | GACTATAGTTTTTTTTTTTT+TGG | + | chr5.3:27842004-27842023 | None:intergenic | 15.0% |
| !!! | TTTTTTAAGTTGCATTTAAA+AGG | - | chr5.3:27844864-27844883 | MS.gene91900:intron | 15.0% |
| !!! | TTTTTTTTTGTTGATAAAAG+AGG | - | chr5.3:27844046-27844065 | MS.gene91900:intron | 15.0% |
| !! | AAAAAAAAAAACTTGGTATC+CGG | + | chr5.3:27842863-27842882 | None:intergenic | 20.0% |
| !! | AAATTGTGATCTAAATCTTA+TGG | - | chr5.3:27844185-27844204 | MS.gene91900:intron | 20.0% |
| !! | AAGTTATCTAAATTGTTATC+AGG | - | chr5.3:27841622-27841641 | MS.gene91900:CDS | 20.0% |
| !! | AATAAACTAAATCCTTGAAA+AGG | + | chr5.3:27841815-27841834 | None:intergenic | 20.0% |
| !! | AATGTGATTGGATAAAAAAA+AGG | - | chr5.3:27841530-27841549 | MS.gene91900:CDS | 20.0% |
| !! | AATTTAGATAACTTACTAAG+AGG | + | chr5.3:27841616-27841635 | None:intergenic | 20.0% |
| !! | AGAAAACAAAAATAAACAAG+AGG | + | chr5.3:27841731-27841750 | None:intergenic | 20.0% |
| !! | AGCTAATAATCGTTATAAAT+TGG | - | chr5.3:27844140-27844159 | MS.gene91900:intron | 20.0% |
| !! | ATACAATTACTCAATTCAAA+AGG | + | chr5.3:27842617-27842636 | None:intergenic | 20.0% |
| !! | ATGACAATTATGCAAAATTA+AGG | + | chr5.3:27842646-27842665 | None:intergenic | 20.0% |
| !! | ATTTCAAAGTTAAGCTATAT+TGG | + | chr5.3:27844902-27844921 | None:intergenic | 20.0% |
| !! | CAAGTAGATATAATAAATCT+TGG | - | chr5.3:27844510-27844529 | MS.gene91900:intron | 20.0% |
| !! | CTAAAACTAAAACTACAAAT+AGG | + | chr5.3:27844080-27844099 | None:intergenic | 20.0% |
| !! | TTTATAACGATTATTAGCTA+TGG | + | chr5.3:27844139-27844158 | None:intergenic | 20.0% |
| !!! | ATTTGAACTATTATTTTCCA+CGG | - | chr5.3:27843703-27843722 | MS.gene91900:intron | 20.0% |
| !!! | CTATTTGTAGTTTTAGTTTT+AGG | - | chr5.3:27844078-27844097 | MS.gene91900:intron | 20.0% |
| !!! | GTTAGTTTTAAGTATCATTT+TGG | + | chr5.3:27841909-27841928 | None:intergenic | 20.0% |
| !!! | TATGGTATGATTATTTTTGT+TGG | - | chr5.3:27844216-27844235 | MS.gene91900:intron | 20.0% |
| !!! | TCTTTTTTTTATCTTCGTAT+AGG | - | chr5.3:27845158-27845177 | MS.gene91900:intron | 20.0% |
| !!! | TTTTTTATGTCAATTATCCA+AGG | - | chr5.3:27842711-27842730 | MS.gene91900:intron | 20.0% |
| ! | AAAAATTGGTTGCAATTATC+TGG | - | chr5.3:27844466-27844485 | MS.gene91900:intron | 25.0% |
| ! | AAACATGATCTTTACAACAA+AGG | + | chr5.3:27842307-27842326 | None:intergenic | 25.0% |
| ! | AACATGATCTTTACAACAAA+GGG | + | chr5.3:27842306-27842325 | None:intergenic | 25.0% |
| ! | AATCTTATGGTTATGCTTTA+TGG | - | chr5.3:27844198-27844217 | MS.gene91900:intron | 25.0% |
| ! | ACAATGACTAGACAAAAATT+AGG | - | chr5.3:27841555-27841574 | MS.gene91900:CDS | 25.0% |
| ! | ACAATGTAAGATATACATTC+TGG | + | chr5.3:27843565-27843584 | None:intergenic | 25.0% |
| ! | AGAAGTTAATAACAGTGTAT+TGG | - | chr5.3:27843038-27843057 | MS.gene91900:CDS | 25.0% |
| ! | AGTACATAAACCAAAGAAAT+CGG | + | chr5.3:27843745-27843764 | None:intergenic | 25.0% |
| ! | ATACACTGTTATTAACTTCT+AGG | + | chr5.3:27843038-27843057 | None:intergenic | 25.0% |
| ! | TCAACTCCTTATAAACATAT+TGG | + | chr5.3:27841368-27841387 | None:intergenic | 25.0% |
| ! | TCATGTAACCAAGAAAATTT+AGG | - | chr5.3:27841851-27841870 | MS.gene91900:CDS | 25.0% |
| ! | TCCTTATACTTGCAATTAAA+AGG | - | chr5.3:27845395-27845414 | MS.gene91900:intron | 25.0% |
| ! | TCTTATGAGAAACAATTGAA+TGG | - | chr5.3:27843366-27843385 | MS.gene91900:intron | 25.0% |
| !! | CGAACATATTATTTTCTGTT+TGG | - | chr5.3:27844556-27844575 | MS.gene91900:intron | 25.0% |
| !! | TAAATTTTCTTGGTTACATG+AGG | + | chr5.3:27841852-27841871 | None:intergenic | 25.0% |
| !! | TACTTGTTAAACATCATGTA+TGG | + | chr5.3:27844496-27844515 | None:intergenic | 25.0% |
| !! | TATGATTTTCCTCAATTGAA+TGG | + | chr5.3:27843346-27843365 | None:intergenic | 25.0% |
| !! | TTACTTTAAAAGACTGTATC+TGG | - | chr5.3:27843919-27843938 | MS.gene91900:intron | 25.0% |
| !! | TTTAGTCTCCTAAATTTTCT+TGG | + | chr5.3:27841862-27841881 | None:intergenic | 25.0% |
| !!! | ACCTTTTAATTGCAAGTATA+AGG | + | chr5.3:27845399-27845418 | None:intergenic | 25.0% |
| !!! | ATAAATTGGCATTGTTGTTT+TGG | - | chr5.3:27844154-27844173 | MS.gene91900:intron | 25.0% |
| !!! | ATTGAAGATTTTTTGTTCCA+AGG | + | chr5.3:27843862-27843881 | None:intergenic | 25.0% |
| !!! | GTGTTCGAAAAGTTTTTTTT+GGG | - | chr5.3:27842922-27842941 | MS.gene91900:CDS | 25.0% |
| !!! | TAATTGCAACCAATTTTTTG+TGG | + | chr5.3:27844464-27844483 | None:intergenic | 25.0% |
| !!! | TGTGTTCGAAAAGTTTTTTT+TGG | - | chr5.3:27842921-27842940 | MS.gene91900:CDS | 25.0% |
| !!! | TGTTCGAAAAGTTTTTTTTG+GGG | - | chr5.3:27842923-27842942 | MS.gene91900:CDS | 25.0% |
| !!! | TTATTTTTGTTGGTGTTTCA+CGG | - | chr5.3:27844226-27844245 | MS.gene91900:intron | 25.0% |
| AAAAGTGGGTATAAATCCAT+TGG | - | chr5.3:27843944-27843963 | MS.gene91900:intron | 30.0% | |
| ACAATTATATACCTGATAGC+AGG | + | chr5.3:27845086-27845105 | None:intergenic | 30.0% | |
| ATAATTTGGATCAAAGCTTG+TGG | - | chr5.3:27843278-27843297 | MS.gene91900:intron | 30.0% | |
| ATCACTAGGATTAGGTTTAT+TGG | - | chr5.3:27843203-27843222 | MS.gene91900:intron | 30.0% | |
| ATGTAAGATATACATTCTGG+TGG | + | chr5.3:27843562-27843581 | None:intergenic | 30.0% | |
| CTGTAATTATCAGATTCGAT+TGG | - | chr5.3:27843482-27843501 | MS.gene91900:intron | 30.0% | |
| CTTACATTGTTGTCAAATAG+TGG | - | chr5.3:27843575-27843594 | MS.gene91900:intron | 30.0% | |
| CTTCTTCATTGTTATGTTTC+AGG | - | chr5.3:27841784-27841803 | MS.gene91900:intron | 30.0% | |
| GGAATATAAAGATGACTTGA+TGG | + | chr5.3:27841347-27841366 | None:intergenic | 30.0% | |
| TAACAGGATCAAAAGCAAAA+AGG | + | chr5.3:27842283-27842302 | None:intergenic | 30.0% | |
| TACATTTCACCATTCAATTG+AGG | - | chr5.3:27843334-27843353 | MS.gene91900:intron | 30.0% | |
| TTGGAAGAGATGAATAAGTT+TGG | + | chr5.3:27844265-27844284 | None:intergenic | 30.0% | |
| ! | ATTTTGTTCTATGTTGTGGT+GGG | - | chr5.3:27842503-27842522 | MS.gene91900:intron | 30.0% |
| ! | TATTTTGTTCTATGTTGTGG+TGG | - | chr5.3:27842502-27842521 | MS.gene91900:intron | 30.0% |
| ! | TTAAGAACTGGTAATGTGAT+TGG | - | chr5.3:27841518-27841537 | MS.gene91900:CDS | 30.0% |
| ! | TTAATAACAGTGTATTGGTG+TGG | - | chr5.3:27843043-27843062 | MS.gene91900:CDS | 30.0% |
| ! | TTCCATACATAATTTTGCTC+TGG | - | chr5.3:27842774-27842793 | MS.gene91900:intron | 30.0% |
| ! | TTTGTGTTTGATCGTTGTTT+TGG | - | chr5.3:27842349-27842368 | MS.gene91900:intron | 30.0% |
| !! | TTGTGTTTGATCGTTGTTTT+GGG | - | chr5.3:27842350-27842369 | MS.gene91900:intron | 30.0% |
| !!! | AGGAAATCTCATTTGTTTTG+AGG | + | chr5.3:27842597-27842616 | None:intergenic | 30.0% |
| !!! | ATTTTGCTCTGGCTTTAAAT+AGG | - | chr5.3:27842785-27842804 | MS.gene91900:intron | 30.0% |
| !!! | GATTGTTGAGTTGTTTTGAT+TGG | - | chr5.3:27842392-27842411 | MS.gene91900:intron | 30.0% |
| !!! | TGCTATTTTGTTCTATGTTG+TGG | - | chr5.3:27842499-27842518 | MS.gene91900:intron | 30.0% |
| !!! | TTCTCCTTATTGATTTTGTG+TGG | - | chr5.3:27841689-27841708 | MS.gene91900:CDS | 30.0% |
| AAAAACACAAATGACGGTTC+CGG | + | chr5.3:27844840-27844859 | None:intergenic | 35.0% | |
| AAAAGATCTCTGCTACTACT+TGG | - | chr5.3:27845371-27845390 | MS.gene91900:intron | 35.0% | |
| AAAGATCTCTGCTACTACTT+GGG | - | chr5.3:27845372-27845391 | MS.gene91900:intron | 35.0% | |
| AACATTACGTTTGTCTGAGT+GGG | - | chr5.3:27844283-27844302 | MS.gene91900:intron | 35.0% | |
| AATCAAACCATAGCTGAGAA+AGG | - | chr5.3:27844978-27844997 | MS.gene91900:intron | 35.0% | |
| ACTCTCATTGAAGGATTTGA+TGG | + | chr5.3:27843127-27843146 | None:intergenic | 35.0% | |
| ACTTTGTACTAAACCGTGTA+TGG | + | chr5.3:27843643-27843662 | None:intergenic | 35.0% | |
| AGACTGTATCTGGAAAAAAG+TGG | - | chr5.3:27843929-27843948 | MS.gene91900:intron | 35.0% | |
| AGCCAGAGCAAAATTATGTA+TGG | + | chr5.3:27842779-27842798 | None:intergenic | 35.0% | |
| AGGTATCTATTACTCCCAAA+GGG | - | chr5.3:27845415-27845434 | MS.gene91900:intron | 35.0% | |
| CATAATTCAAGCTGAAGACA+CGG | - | chr5.3:27845189-27845208 | MS.gene91900:intron | 35.0% | |
| CATTTGATACAGAGAAGAAG+AGG | - | chr5.3:27842080-27842099 | MS.gene91900:intron | 35.0% | |
| GAATCTCTCTGATGTGTTAT+GGG | - | chr5.3:27843796-27843815 | MS.gene91900:intron | 35.0% | |
| GACTGTATCTGGAAAAAAGT+GGG | - | chr5.3:27843930-27843949 | MS.gene91900:intron | 35.0% | |
| GATGCCACACAAAATCAATA+AGG | + | chr5.3:27841696-27841715 | None:intergenic | 35.0% | |
| GTAGACAAACTGTGAAAAGA+AGG | + | chr5.3:27843885-27843904 | None:intergenic | 35.0% | |
| TAAACCTAATCCTAGTGATC+AGG | + | chr5.3:27843202-27843221 | None:intergenic | 35.0% | |
| TATGCAATTACAGATCCACA+CGG | + | chr5.3:27843450-27843469 | None:intergenic | 35.0% | |
| TCACAGTTTGTCTACTTCTA+TGG | - | chr5.3:27843890-27843909 | MS.gene91900:intron | 35.0% | |
| TCTTTACAACAAAGGGTAAC+AGG | + | chr5.3:27842299-27842318 | None:intergenic | 35.0% | |
| TGAAACTGCACCTAAAAGAA+AGG | + | chr5.3:27845036-27845055 | None:intergenic | 35.0% | |
| TGATCAGGTGACATTGTAAA+AGG | + | chr5.3:27843187-27843206 | None:intergenic | 35.0% | |
| TGCAATTCAACTCTCATTGA+AGG | + | chr5.3:27843136-27843155 | None:intergenic | 35.0% | |
| TTATATCCAACTTGACGCAT+TGG | + | chr5.3:27843310-27843329 | None:intergenic | 35.0% | |
| TTTGATTATTCGCCAGTACT+CGG | + | chr5.3:27844965-27844984 | None:intergenic | 35.0% | |
| ! | AAGGTATCTATTACTCCCAA+AGG | - | chr5.3:27845414-27845433 | MS.gene91900:intron | 35.0% |
| ! | AGAACATTGGACACAGTTTT+CGG | + | chr5.3:27845247-27845266 | None:intergenic | 35.0% |
| ! | TTCCAACTTGTTTAGATCTG+CGG | - | chr5.3:27845109-27845128 | MS.gene91900:intron | 35.0% |
| !! | ATTGACATCACCGATTTCTT+TGG | - | chr5.3:27843732-27843751 | MS.gene91900:intron | 35.0% |
| !! | GGCATATTGGGCTATTTTAA+AGG | - | chr5.3:27845289-27845308 | MS.gene91900:intron | 35.0% |
| !! | TACAAAGTGCTGTCAAATAG+CGG | - | chr5.3:27843655-27843674 | MS.gene91900:intron | 35.0% |
| !! | TTGTCAAATAGTGGTGCTAT+AGG | - | chr5.3:27843584-27843603 | MS.gene91900:intron | 35.0% |
| !!! | GTTGAGTTGTTTTGATTGGT+GGG | - | chr5.3:27842396-27842415 | MS.gene91900:intron | 35.0% |
| !!! | TGTACTTGTTTTACCTTTGC+AGG | - | chr5.3:27843774-27843793 | MS.gene91900:intron | 35.0% |
| !!! | TGTTGAGTTGTTTTGATTGG+TGG | - | chr5.3:27842395-27842414 | MS.gene91900:intron | 35.0% |
| !!! | TTCTTTTTCTGGCTTCTCTT+TGG | - | chr5.3:27845539-27845558 | MS.gene91900:intron | 35.0% |
| AAAAACCTTCGCCAAAACCA+TGG | + | chr5.3:27843241-27843260 | None:intergenic | 40.0% | |
| AATCTCGGATCACTTAAGCA+AGG | - | chr5.3:27844309-27844328 | MS.gene91900:intron | 40.0% | |
| ACATGGAGTGATGCATTTGA+TGG | - | chr5.3:27844747-27844766 | MS.gene91900:intron | 40.0% | |
| ACCACGTTCGATTTAAGAAC+TGG | - | chr5.3:27841506-27841525 | MS.gene91900:CDS | 40.0% | |
| ACCAGTTCTTAAATCGAACG+TGG | + | chr5.3:27841510-27841529 | None:intergenic | 40.0% | |
| ACCTATTGGACTAAGAGTCA+TGG | - | chr5.3:27843007-27843026 | MS.gene91900:CDS | 40.0% | |
| AGAGGAAGAAACAGAAGAAG+AGG | - | chr5.3:27842098-27842117 | MS.gene91900:CDS | 40.0% | |
| AGATACTCCTTTCTCAGCTA+TGG | + | chr5.3:27844988-27845007 | None:intergenic | 40.0% | |
| AGCTCAAACTACATACTCCT+TGG | + | chr5.3:27842731-27842750 | None:intergenic | 40.0% | |
| AGCTGTATTGTCAATTTGCG+TGG | - | chr5.3:27842747-27842766 | MS.gene91900:intron | 40.0% | |
| AGCTTGATACTTTGTCTTGC+AGG | + | chr5.3:27842215-27842234 | None:intergenic | 40.0% | |
| ATCAAATGACACGAGTGTCA+AGG | + | chr5.3:27842068-27842087 | None:intergenic | 40.0% | |
| ATCTATTACTCCCAAAGGGT+AGG | - | chr5.3:27845419-27845438 | MS.gene91900:intron | 40.0% | |
| ATGCAATTACAGATCCACAC+GGG | + | chr5.3:27843449-27843468 | None:intergenic | 40.0% | |
| CAACATTACGTTTGTCTGAG+TGG | - | chr5.3:27844282-27844301 | MS.gene91900:intron | 40.0% | |
| CACTCAGACAAACGTAATGT+TGG | + | chr5.3:27844284-27844303 | None:intergenic | 40.0% | |
| CAGATTCTTTCCCTTTACCA+AGG | - | chr5.3:27843836-27843855 | MS.gene91900:intron | 40.0% | |
| CGAAATATTCACCTCCATCA+GGG | + | chr5.3:27844412-27844431 | None:intergenic | 40.0% | |
| GAAATCGGTGATGTCAATTG+AGG | + | chr5.3:27843730-27843749 | None:intergenic | 40.0% | |
| GATAGCAGGATATGTTAGAC+AGG | + | chr5.3:27845072-27845091 | None:intergenic | 40.0% | |
| GCTGTATTGTCAATTTGCGT+GGG | - | chr5.3:27842748-27842767 | MS.gene91900:intron | 40.0% | |
| GGAATCTCTCTGATGTGTTA+TGG | - | chr5.3:27843795-27843814 | MS.gene91900:intron | 40.0% | |
| GGGGAAATGCCACAAAAAAT+TGG | - | chr5.3:27844452-27844471 | MS.gene91900:intron | 40.0% | |
| GGTAAAGGGAAAGAATCTGA+CGG | + | chr5.3:27843835-27843854 | None:intergenic | 40.0% | |
| GTCTAACATATCCTGCTATC+AGG | - | chr5.3:27845072-27845091 | MS.gene91900:intron | 40.0% | |
| TACAATGTCACCTGATCACT+AGG | - | chr5.3:27843189-27843208 | MS.gene91900:intron | 40.0% | |
| TAGGTTTATTGGAGAACCAG+CGG | - | chr5.3:27843214-27843233 | MS.gene91900:intron | 40.0% | |
| TCTATTACTCCCAAAGGGTA+GGG | - | chr5.3:27845420-27845439 | MS.gene91900:intron | 40.0% | |
| TGAGCATCAAGGAAATGCTA+AGG | + | chr5.3:27844773-27844792 | None:intergenic | 40.0% | |
| TGTCTGAGTGGGATTAATCT+CGG | - | chr5.3:27844294-27844313 | MS.gene91900:intron | 40.0% | |
| TGTGCTAAGCAATGATCCTA+TGG | + | chr5.3:27842170-27842189 | None:intergenic | 40.0% | |
| TTCGCACCAATAACGTTGTT+GGG | - | chr5.3:27844428-27844447 | MS.gene91900:intron | 40.0% | |
| TTGTCTTGCAGGTATCAAGA+GGG | + | chr5.3:27842204-27842223 | None:intergenic | 40.0% | |
| TTTCGCACCAATAACGTTGT+TGG | - | chr5.3:27844427-27844446 | MS.gene91900:intron | 40.0% | |
| TTTGTCTTGCAGGTATCAAG+AGG | + | chr5.3:27842205-27842224 | None:intergenic | 40.0% | |
| ! | ACGTTTTTAACCCTACCCTT+TGG | + | chr5.3:27845433-27845452 | None:intergenic | 40.0% |
| ! | AGCATTGCTCTTGATGATCA+AGG | - | chr5.3:27845348-27845367 | MS.gene91900:intron | 40.0% |
| ! | CAAGACAAAGTATCAAGCTG+AGG | - | chr5.3:27842216-27842235 | MS.gene91900:intron | 40.0% |
| ! | CAAGTTTGCTCTTGTTCCAA+TGG | + | chr5.3:27843963-27843982 | None:intergenic | 40.0% |
| ! | CGTTTTTAACCCTACCCTTT+GGG | + | chr5.3:27845432-27845451 | None:intergenic | 40.0% |
| ! | GCAGATCTAAACAAGTTGGA+AGG | + | chr5.3:27845110-27845129 | None:intergenic | 40.0% |
| ! | GCGTTTATGGCCTTTCTTTT+AGG | - | chr5.3:27845023-27845042 | MS.gene91900:intron | 40.0% |
| ! | GTATTGGTGTGGACATTGAA+AGG | - | chr5.3:27843054-27843073 | MS.gene91900:CDS | 40.0% |
| ! | TCAAGCTAGTTTGTCTCAAC+CGG | - | chr5.3:27844818-27844837 | MS.gene91900:intron | 40.0% |
| ! | TCGGCGATTTTGTCAGTTTT+GGG | + | chr5.3:27845228-27845247 | None:intergenic | 40.0% |
| ! | TTCGGCGATTTTGTCAGTTT+TGG | + | chr5.3:27845229-27845248 | None:intergenic | 40.0% |
| !! | TTTTGTTGGTGTTTCACGGT+TGG | - | chr5.3:27844230-27844249 | MS.gene91900:intron | 40.0% |
| !!! | GATTTTTTGTTCCAAGGCCT+TGG | + | chr5.3:27843856-27843875 | None:intergenic | 40.0% |
| !!! | TGTTTGATCGTTGTTTTGGG+TGG | - | chr5.3:27842353-27842372 | MS.gene91900:intron | 40.0% |
| AAAACTTGGTATCCGGTCCA+AGG | + | chr5.3:27842856-27842875 | None:intergenic | 45.0% | |
| AAATGACACGAGTGTCAAGG+TGG | + | chr5.3:27842065-27842084 | None:intergenic | 45.0% | |
| AACCGTGTATGGCAAAACAG+TGG | + | chr5.3:27843632-27843651 | None:intergenic | 45.0% | |
| AATCCCATCGTCTACTAGTG+TGG | + | chr5.3:27842813-27842832 | None:intergenic | 45.0% | |
| AATGTGCCAATGCGTCAAGT+TGG | - | chr5.3:27843301-27843320 | MS.gene91900:intron | 45.0% | |
| ACCAATAACGTTGTTGGGAG+GGG | - | chr5.3:27844433-27844452 | MS.gene91900:intron | 45.0% | |
| ACTCCATGTGCCTTCTGTAA+GGG | + | chr5.3:27844736-27844755 | None:intergenic | 45.0% | |
| ACTCTTAGTCCAATAGGTGC+CGG | + | chr5.3:27843005-27843024 | None:intergenic | 45.0% | |
| ACTGTGTCCAATGTTCTCTG+CGG | - | chr5.3:27845250-27845269 | MS.gene91900:intron | 45.0% | |
| ACTTGTCTGCATCCTTGAAG+AGG | + | chr5.3:27844682-27844701 | None:intergenic | 45.0% | |
| ATCCCATCGTCTACTAGTGT+GGG | + | chr5.3:27842812-27842831 | None:intergenic | 45.0% | |
| CACCAATAACGTTGTTGGGA+GGG | - | chr5.3:27844432-27844451 | MS.gene91900:intron | 45.0% | |
| CATCAGAGAGATTCCTGCAA+AGG | + | chr5.3:27843790-27843809 | None:intergenic | 45.0% | |
| CCAATGTTCTCTGCGGAATA+TGG | - | chr5.3:27845257-27845276 | MS.gene91900:intron | 45.0% | |
| CCATATTCCGCAGAGAACAT+TGG | + | chr5.3:27845260-27845279 | None:intergenic | 45.0% | |
| CCATTTCGTTAGAGCTGAGA+CGG | - | chr5.3:27845514-27845533 | MS.gene91900:intron | 45.0% | |
| CTACTGAGAACCCTTACAGA+AGG | - | chr5.3:27844723-27844742 | MS.gene91900:CDS | 45.0% | |
| CTTGAGCTACCTGAATTGCA+GGG | + | chr5.3:27844803-27844822 | None:intergenic | 45.0% | |
| GAAGAAGAGGAAGATGAACG+TGG | - | chr5.3:27842111-27842130 | MS.gene91900:CDS | 45.0% | |
| GAGGGGAAATGCCACTATAA+AGG | - | chr5.3:27844372-27844391 | MS.gene91900:intron | 45.0% | |
| GATCACTTAAGCAAGGTCTC+GGG | - | chr5.3:27844316-27844335 | MS.gene91900:intron | 45.0% | |
| GCCATGACTCTTAGTCCAAT+AGG | + | chr5.3:27843011-27843030 | None:intergenic | 45.0% | |
| GCGAAATATTCACCTCCATC+AGG | + | chr5.3:27844413-27844432 | None:intergenic | 45.0% | |
| GGATCACTTAAGCAAGGTCT+CGG | - | chr5.3:27844315-27844334 | MS.gene91900:intron | 45.0% | |
| GGGAAATGCCACTATAAAGG+TGG | - | chr5.3:27844375-27844394 | MS.gene91900:intron | 45.0% | |
| GTCACCTGATCACTAGGATT+AGG | - | chr5.3:27843195-27843214 | MS.gene91900:intron | 45.0% | |
| GTCCGCAGATCTAAACAAGT+TGG | + | chr5.3:27845114-27845133 | None:intergenic | 45.0% | |
| TACCTGAATTGCAGGGTTAG+AGG | + | chr5.3:27844796-27844815 | None:intergenic | 45.0% | |
| TCAGCTGAAAAACCGAGTAC+TGG | - | chr5.3:27844950-27844969 | MS.gene91900:intron | 45.0% | |
| TCCAAGGACAGACTACTACT+GGG | + | chr5.3:27842840-27842859 | None:intergenic | 45.0% | |
| TCTCTCTGATGTGTTATGGG+AGG | - | chr5.3:27843799-27843818 | MS.gene91900:intron | 45.0% | |
| TCTCTGCGGAATATGGAAAC+AGG | - | chr5.3:27845264-27845283 | MS.gene91900:intron | 45.0% | |
| TCTTTCCCATCCACAAGTCT+CGG | + | chr5.3:27844343-27844362 | None:intergenic | 45.0% | |
| TGCAATTACAGATCCACACG+GGG | + | chr5.3:27843448-27843467 | None:intergenic | 45.0% | |
| TGCGGAATATGGAAACAGGA+GGG | - | chr5.3:27845268-27845287 | MS.gene91900:intron | 45.0% | |
| TGGATGGGAAAGACGTTGTT+GGG | - | chr5.3:27844350-27844369 | MS.gene91900:intron | 45.0% | |
| TGTTAATTGCTGCTGCTGCT+GGG | - | chr5.3:27843981-27844000 | MS.gene91900:intron | 45.0% | |
| TGTTCCAAGGCCTTGGTAAA+GGG | + | chr5.3:27843849-27843868 | None:intergenic | 45.0% | |
| TTGGTGTGGACATTGAAAGG+TGG | - | chr5.3:27843057-27843076 | MS.gene91900:CDS | 45.0% | |
| TTGTTAATTGCTGCTGCTGC+TGG | - | chr5.3:27843980-27843999 | MS.gene91900:intron | 45.0% | |
| TTGTTCCAAGGCCTTGGTAA+AGG | + | chr5.3:27843850-27843869 | None:intergenic | 45.0% | |
| ! | AGCCCTTTAGCCTTTCCAAA+GGG | + | chr5.3:27844705-27844724 | None:intergenic | 45.0% |
| ! | AGGTGGAATGCTGTTAGCTT+TGG | - | chr5.3:27843074-27843093 | MS.gene91900:CDS | 45.0% |
| ! | AGTCCCTTTGGAAAGGCTAA+AGG | - | chr5.3:27844699-27844718 | MS.gene91900:CDS | 45.0% |
| ! | ATGGAAACAGGAGGGCATAT+TGG | - | chr5.3:27845276-27845295 | MS.gene91900:intron | 45.0% |
| ! | CGGCGATTTTGTCAGTTTTG+GGG | + | chr5.3:27845227-27845246 | None:intergenic | 45.0% |
| ! | CTGAGACGGAGTTCTTTTTC+TGG | - | chr5.3:27845528-27845547 | MS.gene91900:intron | 45.0% |
| ! | GTCCCTTTGGAAAGGCTAAA+GGG | - | chr5.3:27844700-27844719 | MS.gene91900:CDS | 45.0% |
| ! | GTTCTATGTTGTGGTGGGAA+AGG | - | chr5.3:27842508-27842527 | MS.gene91900:intron | 45.0% |
| ! | TAGCCCTTTAGCCTTTCCAA+AGG | + | chr5.3:27844706-27844725 | None:intergenic | 45.0% |
| ! | TGCCACTGTTTTGCCATACA+CGG | - | chr5.3:27843627-27843646 | MS.gene91900:intron | 45.0% |
| ! | TGGAAACAGGAGGGCATATT+GGG | - | chr5.3:27845277-27845296 | MS.gene91900:intron | 45.0% |
| ! | TTTCAGGCGTGTCCTTTTCA+AGG | - | chr5.3:27841800-27841819 | MS.gene91900:intron | 45.0% |
| !!! | TATTTTTAAAAAAAAAAACT+TGG | + | chr5.3:27842870-27842889 | None:intergenic | 5.0% |
| AGCATCGCTGTCTGCGTTTA+TGG | - | chr5.3:27845010-27845029 | MS.gene91900:intron | 50.0% | |
| AGGATGCAGACAAGTCCCTT+TGG | - | chr5.3:27844687-27844706 | MS.gene91900:CDS | 50.0% | |
| AGGGTTAGAGGTGAGCATCA+AGG | + | chr5.3:27844784-27844803 | None:intergenic | 50.0% | |
| ATAAACGCAGACAGCGATGC+TGG | + | chr5.3:27845011-27845030 | None:intergenic | 50.0% | |
| ATGGGAAAGACGTTGTTGGG+AGG | - | chr5.3:27844353-27844372 | MS.gene91900:intron | 50.0% | |
| CAAGCTGAGGCACGTTCTAA+GGG | - | chr5.3:27842229-27842248 | MS.gene91900:intron | 50.0% | |
| CACCTCTAACCCTGCAATTC+AGG | - | chr5.3:27844791-27844810 | MS.gene91900:intron | 50.0% | |
| CACTATAAAGGTGGCCAGCT+AGG | - | chr5.3:27844384-27844403 | MS.gene91900:intron | 50.0% | |
| CACTCCATGTGCCTTCTGTA+AGG | + | chr5.3:27844737-27844756 | None:intergenic | 50.0% | |
| CATCAAGTATGTTCCCCGTG+TGG | - | chr5.3:27843432-27843451 | MS.gene91900:intron | 50.0% | |
| CCAAGGACAGACTACTACTG+GGG | + | chr5.3:27842839-27842858 | None:intergenic | 50.0% | |
| CCTTGAAGAGGCTGTATCCA+GGG | + | chr5.3:27844670-27844689 | None:intergenic | 50.0% | |
| CTACCTCACCTGAGTTGTGA+TGG | + | chr5.3:27844017-27844036 | None:intergenic | 50.0% | |
| CTAGCTGGCCACCTTTATAG+TGG | + | chr5.3:27844386-27844405 | None:intergenic | 50.0% | |
| CTGAGTTGTGATGGCAGTGA+CGG | + | chr5.3:27844008-27844027 | None:intergenic | 50.0% | |
| CTGCGGAATATGGAAACAGG+AGG | - | chr5.3:27845267-27845286 | MS.gene91900:intron | 50.0% | |
| CTTGAAGAGGCTGTATCCAG+GGG | + | chr5.3:27844669-27844688 | None:intergenic | 50.0% | |
| CTTTCCCTTTACCAAGGCCT+TGG | - | chr5.3:27843842-27843861 | MS.gene91900:intron | 50.0% | |
| GAGGAAGATGAACGTGGATC+TGG | - | chr5.3:27842117-27842136 | MS.gene91900:CDS | 50.0% | |
| GCACCAATAACGTTGTTGGG+AGG | - | chr5.3:27844431-27844450 | MS.gene91900:intron | 50.0% | |
| GCTTGAGCTACCTGAATTGC+AGG | + | chr5.3:27844804-27844823 | None:intergenic | 50.0% | |
| GTAGTAGTCTGTCCTTGGAC+CGG | - | chr5.3:27842841-27842860 | MS.gene91900:intron | 50.0% | |
| GTCCAAGGACAGACTACTAC+TGG | + | chr5.3:27842841-27842860 | None:intergenic | 50.0% | |
| GTGATGTCAATTGAGGACCG+TGG | + | chr5.3:27843723-27843742 | None:intergenic | 50.0% | |
| GTGGATGGGAAAGACGTTGT+TGG | - | chr5.3:27844349-27844368 | MS.gene91900:intron | 50.0% | |
| GTTAATTGCTGCTGCTGCTG+GGG | - | chr5.3:27843982-27844001 | MS.gene91900:intron | 50.0% | |
| TCAAGCTGAGGCACGTTCTA+AGG | - | chr5.3:27842228-27842247 | MS.gene91900:intron | 50.0% | |
| TCCCATCGTCTACTAGTGTG+GGG | + | chr5.3:27842811-27842830 | None:intergenic | 50.0% | |
| TCCCCTCCCAACAACGTTAT+TGG | + | chr5.3:27844437-27844456 | None:intergenic | 50.0% | |
| TCCTTGAAGAGGCTGTATCC+AGG | + | chr5.3:27844671-27844690 | None:intergenic | 50.0% | |
| TGATCCTATGGCTCCAGAAG+TGG | + | chr5.3:27842158-27842177 | None:intergenic | 50.0% | |
| TGGGAAAGACGTTGTTGGGA+GGG | - | chr5.3:27844354-27844373 | MS.gene91900:intron | 50.0% | |
| ! | ATTGATGACTGTGTAGCCCC+TGG | - | chr5.3:27844650-27844669 | MS.gene91900:CDS | 50.0% |
| ! | CCGTCTCAGCTCTAACGAAA+TGG | + | chr5.3:27845517-27845536 | None:intergenic | 50.0% |
| ! | GAACCCTTACAGAAGGCACA+TGG | - | chr5.3:27844730-27844749 | MS.gene91900:intron | 50.0% |
| ! | GAACGTGGATCTGGAATCCT+TGG | - | chr5.3:27842126-27842145 | MS.gene91900:CDS | 50.0% |
| ! | GCAGACAAGTCCCTTTGGAA+AGG | - | chr5.3:27844692-27844711 | MS.gene91900:CDS | 50.0% |
| ! | GTGTTGTATGAGTGTCGCAC+AGG | - | chr5.3:27842970-27842989 | MS.gene91900:CDS | 50.0% |
| ! | TATGAGTGTCGCACAGGTGT+CGG | - | chr5.3:27842976-27842995 | MS.gene91900:CDS | 50.0% |
| ATTGGAGAACCAGCGGTCCA+TGG | - | chr5.3:27843221-27843240 | MS.gene91900:intron | 55.0% | |
| CCCCAGTAGTAGTCTGTCCT+TGG | - | chr5.3:27842836-27842855 | MS.gene91900:intron | 55.0% | |
| CCCTGGATACAGCCTCTTCA+AGG | - | chr5.3:27844667-27844686 | MS.gene91900:CDS | 55.0% | |
| CGTCACTGCCATCACAACTC+AGG | - | chr5.3:27844006-27844025 | MS.gene91900:intron | 55.0% | |
| CTGCCATCACAACTCAGGTG+AGG | - | chr5.3:27844011-27844030 | MS.gene91900:intron | 55.0% | |
| GCCCCACACTAGTAGACGAT+GGG | - | chr5.3:27842807-27842826 | MS.gene91900:intron | 55.0% | |
| GGGAAAGACGTTGTTGGGAG+GGG | - | chr5.3:27844355-27844374 | MS.gene91900:intron | 55.0% | |
| TCCAGAAGTGGCTTCTGCCA+AGG | + | chr5.3:27842146-27842165 | None:intergenic | 55.0% | |
| TCCTTGGCAGAAGCCACTTC+TGG | - | chr5.3:27842142-27842161 | MS.gene91900:CDS | 55.0% | |
| TGACACGAGTGTCAAGGTGG+TGG | + | chr5.3:27842062-27842081 | None:intergenic | 55.0% | |
| ! | GAACCAGCGGTCCATGGTTT+TGG | - | chr5.3:27843227-27843246 | MS.gene91900:intron | 55.0% |
| !! | GAAGCCACTTCTGGAGCCAT+AGG | - | chr5.3:27842151-27842170 | MS.gene91900:CDS | 55.0% |
| CCAGCTAGGTTCCCTGATGG+AGG | - | chr5.3:27844398-27844417 | MS.gene91900:intron | 60.0% | |
| CCTCCATCAGGGAACCTAGC+TGG | + | chr5.3:27844401-27844420 | None:intergenic | 60.0% | |
| CGGGTCCGAGACTTGTGGAT+GGG | - | chr5.3:27844335-27844354 | MS.gene91900:intron | 60.0% | |
| GGCCCCACACTAGTAGACGA+TGG | - | chr5.3:27842806-27842825 | MS.gene91900:intron | 60.0% | |
| TCGCCAAAACCATGGACCGC+TGG | + | chr5.3:27843233-27843252 | None:intergenic | 60.0% | |
| TCGGGTCCGAGACTTGTGGA+TGG | - | chr5.3:27844334-27844353 | MS.gene91900:intron | 60.0% | |
| TGGCCAGCTAGGTTCCCTGA+TGG | - | chr5.3:27844395-27844414 | MS.gene91900:intron | 60.0% | |
| TGTCGGACACCGGCACCTAT+TGG | - | chr5.3:27842993-27843012 | MS.gene91900:CDS | 60.0% | |
| !!! | GCGGTCCATGGTTTTGGCGA+AGG | - | chr5.3:27843233-27843252 | MS.gene91900:intron | 60.0% |
| GGTCTCGGGTCCGAGACTTG+TGG | - | chr5.3:27844330-27844349 | MS.gene91900:intron | 65.0% | |
| !! | GTCGCACAGGTGTCGGACAC+CGG | - | chr5.3:27842983-27843002 | MS.gene91900:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 27841317 | 27845583 | 27841317 | ID=MS.gene91900 |
| chr5.3 | mRNA | 27841317 | 27845583 | 27841317 | ID=MS.gene91900.t1;Parent=MS.gene91900 |
| chr5.3 | exon | 27845574 | 27845583 | 27845574 | ID=MS.gene91900.t1.exon1;Parent=MS.gene91900.t1 |
| chr5.3 | CDS | 27845574 | 27845583 | 27845574 | ID=cds.MS.gene91900.t1;Parent=MS.gene91900.t1 |
| chr5.3 | exon | 27844634 | 27844748 | 27844634 | ID=MS.gene91900.t1.exon2;Parent=MS.gene91900.t1 |
| chr5.3 | CDS | 27844634 | 27844748 | 27844634 | ID=cds.MS.gene91900.t1;Parent=MS.gene91900.t1 |
| chr5.3 | exon | 27842873 | 27843104 | 27842873 | ID=MS.gene91900.t1.exon3;Parent=MS.gene91900.t1 |
| chr5.3 | CDS | 27842873 | 27843104 | 27842873 | ID=cds.MS.gene91900.t1;Parent=MS.gene91900.t1 |
| chr5.3 | exon | 27842088 | 27842234 | 27842088 | ID=MS.gene91900.t1.exon4;Parent=MS.gene91900.t1 |
| chr5.3 | CDS | 27842088 | 27842234 | 27842088 | ID=cds.MS.gene91900.t1;Parent=MS.gene91900.t1 |
| chr5.3 | exon | 27841807 | 27841964 | 27841807 | ID=MS.gene91900.t1.exon5;Parent=MS.gene91900.t1 |
| chr5.3 | CDS | 27841807 | 27841964 | 27841807 | ID=cds.MS.gene91900.t1;Parent=MS.gene91900.t1 |
| chr5.3 | exon | 27841484 | 27841720 | 27841484 | ID=MS.gene91900.t1.exon6;Parent=MS.gene91900.t1 |
| chr5.3 | CDS | 27841484 | 27841720 | 27841484 | ID=cds.MS.gene91900.t1;Parent=MS.gene91900.t1 |
| chr5.3 | exon | 27841317 | 27841374 | 27841317 | ID=MS.gene91900.t1.exon7;Parent=MS.gene91900.t1 |
| chr5.3 | CDS | 27841317 | 27841374 | 27841317 | ID=cds.MS.gene91900.t1;Parent=MS.gene91900.t1 |
| Gene Sequence |
| Protein sequence |
