Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050479.t1 | XP_013450547.1 | 98.3 | 484 | 8 | 0 | 1 | 484 | 66 | 549 | 4.40E-284 | 986.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050479.t1 | Q8GWB7 | 67.8 | 485 | 146 | 5 | 1 | 484 | 62 | 537 | 7.4e-187 | 654.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050479.t1 | A0A072UFK8 | 98.3 | 484 | 8 | 0 | 1 | 484 | 66 | 549 | 3.2e-284 | 986.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049171 | MS.gene050479 | -0.800462 | 1.43E-48 | -1.69E-46 |
| MS.gene050479 | MS.gene050547 | 0.985728 | 1.78E-164 | -1.69E-46 |
| MS.gene050479 | MS.gene052015 | 0.811986 | 5.32E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene055206 | -0.800799 | 1.22E-48 | -1.69E-46 |
| MS.gene050479 | MS.gene055289 | -0.805087 | 1.58E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene055370 | -0.811446 | 6.97E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene056313 | 0.802875 | 4.56E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene057196 | -0.815573 | 8.63E-52 | -1.69E-46 |
| MS.gene050479 | MS.gene05837 | -0.819227 | 1.30E-52 | -1.69E-46 |
| MS.gene050479 | MS.gene058544 | -0.818164 | 2.26E-52 | -1.69E-46 |
| MS.gene050479 | MS.gene05914 | -0.805053 | 1.61E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene06092 | -0.809074 | 2.26E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene061360 | -0.819704 | 1.01E-52 | -1.69E-46 |
| MS.gene050479 | MS.gene06288 | -0.815034 | 1.14E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene06655 | -0.814765 | 1.30E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene066602 | 0.806987 | 6.30E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene06869 | -0.804925 | 1.71E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene068820 | -0.810212 | 1.29E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene069593 | -0.821795 | 3.34E-53 | -1.69E-46 |
| MS.gene050479 | MS.gene069855 | -0.805639 | 1.21E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene07004 | 0.843748 | 1.16E-58 | -1.69E-46 |
| MS.gene050479 | MS.gene070947 | 0.819506 | 1.12E-52 | -1.69E-46 |
| MS.gene050479 | MS.gene072612 | 0.824323 | 8.59E-54 | -1.69E-46 |
| MS.gene050479 | MS.gene072880 | 0.835786 | 1.37E-56 | -1.69E-46 |
| MS.gene050479 | MS.gene072962 | -0.800837 | 1.19E-48 | -1.69E-46 |
| MS.gene050479 | MS.gene08919 | 0.805527 | 1.28E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene09798 | -0.822865 | 1.88E-53 | -1.69E-46 |
| MS.gene050479 | MS.gene22437 | 0.807875 | 4.08E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene22474 | -0.84663 | 1.93E-59 | -1.69E-46 |
| MS.gene050479 | MS.gene22952 | 0.840749 | 7.21E-58 | -1.69E-46 |
| MS.gene050479 | MS.gene24080 | -0.801908 | 7.21E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene26294 | 0.809664 | 1.69E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene26400 | 0.808418 | 3.13E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene27117 | -0.810046 | 1.40E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene28395 | 0.832841 | 7.51E-56 | -1.69E-46 |
| MS.gene050479 | MS.gene29342 | 0.801279 | 9.70E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene29928 | 0.852929 | 3.34E-61 | -1.69E-46 |
| MS.gene050479 | MS.gene29992 | -0.804607 | 1.99E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene32646 | 0.82535 | 4.92E-54 | -1.69E-46 |
| MS.gene050479 | MS.gene34445 | 0.843802 | 1.12E-58 | -1.69E-46 |
| MS.gene050479 | MS.gene35741 | 0.826004 | 3.44E-54 | -1.69E-46 |
| MS.gene050479 | MS.gene36336 | -0.808142 | 3.58E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene36337 | -0.822555 | 2.22E-53 | -1.69E-46 |
| MS.gene050479 | MS.gene37350 | 0.807688 | 4.47E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene41384 | 0.823299 | 1.49E-53 | -1.69E-46 |
| MS.gene050479 | MS.gene42884 | -0.80075 | 1.24E-48 | -1.69E-46 |
| MS.gene050479 | MS.gene44439 | -0.808399 | 3.16E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene45607 | -0.831385 | 1.72E-55 | -1.69E-46 |
| MS.gene050479 | MS.gene47696 | 0.801403 | 9.15E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene47719 | 0.814052 | 1.87E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene48023 | 0.801382 | 9.25E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene48050 | 0.824455 | 8.00E-54 | -1.69E-46 |
| MS.gene050479 | MS.gene48885 | 0.822757 | 2.00E-53 | -1.69E-46 |
| MS.gene050479 | MS.gene49038 | 0.847824 | 9.06E-60 | -1.69E-46 |
| MS.gene050479 | MS.gene49126 | -0.802551 | 5.32E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene50279 | 0.813891 | 2.03E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene50781 | -0.823059 | 1.70E-53 | -1.69E-46 |
| MS.gene050479 | MS.gene51018 | 0.805318 | 1.41E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene52273 | -0.816557 | 5.20E-52 | -1.69E-46 |
| MS.gene050479 | MS.gene58033 | 0.811036 | 8.56E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene58071 | -0.805051 | 1.61E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene59101 | -0.801765 | 7.72E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene60158 | 0.806448 | 8.19E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene60176 | -0.809251 | 2.07E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene60177 | -0.811115 | 8.23E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene61144 | -0.814311 | 1.64E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene62174 | 0.849079 | 4.07E-60 | -1.69E-46 |
| MS.gene050479 | MS.gene63292 | 0.846713 | 1.83E-59 | -1.69E-46 |
| MS.gene050479 | MS.gene63502 | 0.839127 | 1.91E-57 | -1.69E-46 |
| MS.gene050479 | MS.gene63928 | 0.805045 | 1.61E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene65247 | 0.824864 | 6.41E-54 | -1.69E-46 |
| MS.gene050479 | MS.gene65400 | -0.826869 | 2.14E-54 | -1.69E-46 |
| MS.gene050479 | MS.gene65527 | 0.850684 | 1.45E-60 | -1.69E-46 |
| MS.gene050479 | MS.gene70226 | 0.80495 | 1.69E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene72416 | -0.811295 | 7.52E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene72426 | 0.802425 | 5.64E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene72720 | -0.802937 | 4.43E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene76521 | -0.812287 | 4.57E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene80244 | 0.812483 | 4.14E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene83095 | -0.811248 | 7.70E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene85136 | -0.809442 | 1.89E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene86504 | 0.80724 | 5.57E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene87675 | -0.805248 | 1.46E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene91226 | 0.81146 | 6.93E-51 | -1.69E-46 |
| MS.gene050479 | MS.gene91900 | 0.809102 | 2.23E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene96948 | 0.806794 | 6.92E-50 | -1.69E-46 |
| MS.gene050479 | MS.gene98480 | 0.802758 | 4.82E-49 | -1.69E-46 |
| MS.gene050479 | MS.gene99062 | 0.801772 | 7.69E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050479.t1 | MTR_7g115460 | 98.347 | 484 | 8 | 0 | 1 | 484 | 66 | 549 | 0.0 | 992 |
| MS.gene050479.t1 | MTR_1g080460 | 78.351 | 485 | 104 | 1 | 1 | 484 | 57 | 541 | 0.0 | 789 |
| MS.gene050479.t1 | MTR_5g012590 | 33.184 | 223 | 136 | 7 | 1 | 216 | 76 | 292 | 3.77e-27 | 114 |
| MS.gene050479.t1 | MTR_4g100950 | 31.390 | 223 | 140 | 7 | 1 | 216 | 74 | 290 | 1.14e-23 | 103 |
| MS.gene050479.t1 | MTR_3g095910 | 35.878 | 131 | 84 | 0 | 1 | 131 | 337 | 467 | 6.97e-22 | 99.4 |
| MS.gene050479.t1 | MTR_1g029130 | 36.090 | 133 | 81 | 3 | 1 | 131 | 326 | 456 | 2.45e-21 | 97.8 |
| MS.gene050479.t1 | MTR_7g113610 | 36.641 | 131 | 83 | 0 | 1 | 131 | 307 | 437 | 5.69e-21 | 96.3 |
| MS.gene050479.t1 | MTR_1g082880 | 35.115 | 131 | 85 | 0 | 1 | 131 | 302 | 432 | 7.38e-20 | 92.8 |
| MS.gene050479.t1 | MTR_1g019530 | 31.538 | 130 | 89 | 0 | 1 | 130 | 329 | 458 | 3.95e-18 | 87.8 |
| MS.gene050479.t1 | MTR_1g019540 | 31.538 | 130 | 89 | 0 | 1 | 130 | 333 | 462 | 6.67e-18 | 87.0 |
| MS.gene050479.t1 | MTR_1g019540 | 31.538 | 130 | 89 | 0 | 1 | 130 | 280 | 409 | 7.41e-18 | 86.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene050479.t1 | AT5G18480 | 67.835 | 485 | 146 | 5 | 1 | 484 | 62 | 537 | 0.0 | 626 |
| MS.gene050479.t1 | AT1G77130 | 31.364 | 220 | 121 | 7 | 1 | 212 | 317 | 514 | 1.49e-22 | 101 |
| MS.gene050479.t1 | AT4G16600 | 32.883 | 222 | 137 | 8 | 1 | 215 | 95 | 311 | 5.27e-22 | 99.4 |
| MS.gene050479.t1 | AT2G35710 | 31.532 | 222 | 139 | 7 | 1 | 215 | 99 | 314 | 2.03e-21 | 97.4 |
| MS.gene050479.t1 | AT2G35710 | 32.178 | 202 | 125 | 6 | 20 | 215 | 11 | 206 | 2.32e-21 | 96.3 |
| MS.gene050479.t1 | AT1G08990 | 40.458 | 131 | 76 | 2 | 1 | 130 | 310 | 439 | 2.99e-21 | 97.4 |
| MS.gene050479.t1 | AT2G35710 | 31.532 | 222 | 139 | 7 | 1 | 215 | 99 | 314 | 3.10e-21 | 94.7 |
| MS.gene050479.t1 | AT3G18660 | 34.351 | 131 | 86 | 0 | 1 | 131 | 349 | 479 | 3.80e-21 | 97.4 |
| MS.gene050479.t1 | AT3G18660 | 34.351 | 131 | 86 | 0 | 1 | 131 | 350 | 480 | 4.12e-21 | 97.1 |
| MS.gene050479.t1 | AT3G18660 | 34.351 | 131 | 86 | 0 | 1 | 131 | 354 | 484 | 4.19e-21 | 97.1 |
| MS.gene050479.t1 | AT1G54940 | 35.385 | 130 | 84 | 0 | 1 | 130 | 303 | 432 | 1.08e-17 | 86.3 |
| MS.gene050479.t1 | AT4G33330 | 33.846 | 130 | 86 | 0 | 1 | 130 | 333 | 462 | 9.47e-17 | 83.6 |
| MS.gene050479.t1 | AT4G33330 | 33.846 | 130 | 86 | 0 | 1 | 130 | 344 | 473 | 1.04e-16 | 83.2 |
| MS.gene050479.t1 | AT4G33330 | 33.846 | 130 | 86 | 0 | 1 | 130 | 333 | 462 | 1.19e-16 | 83.2 |
| MS.gene050479.t1 | AT4G33330 | 33.846 | 130 | 86 | 0 | 1 | 130 | 265 | 394 | 1.19e-16 | 82.8 |
| MS.gene050479.t1 | AT4G33330 | 33.871 | 124 | 82 | 0 | 1 | 124 | 344 | 467 | 3.32e-15 | 78.2 |
Find 115 sgRNAs with CRISPR-Local
Find 270 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAATGTTTATTGTATTATT+TGG | 0.112274 | 7.3:+2124577 | MS.gene050479:CDS |
| GAAAATAGTCATTAGGATTT+TGG | 0.140955 | 7.3:-2123777 | None:intergenic |
| CTCGTCACTTCCTGAGTCTT+TGG | 0.182248 | 7.3:+2124657 | MS.gene050479:CDS |
| GAGTCTTTGGATTATGATTC+TGG | 0.187029 | 7.3:+2124670 | MS.gene050479:CDS |
| GTGTTCGTCCTAAGAGATTT+TGG | 0.201254 | 7.3:+2122266 | MS.gene050479:CDS |
| GGTCTGGATTTCAACTCTTC+TGG | 0.218207 | 7.3:-2122768 | None:intergenic |
| GTGGGGTTCTTCAGGATGTT+AGG | 0.229561 | 7.3:+2123716 | MS.gene050479:intron |
| GTTGATAGTCTCTCCATTTC+CGG | 0.233884 | 7.3:-2122795 | None:intergenic |
| GTGCAAGGTTCCTACCTATT+TGG | 0.237507 | 7.3:+2124432 | MS.gene050479:CDS |
| TTCTGTCTGTTTCTGTTTAA+CGG | 0.247943 | 7.3:+2124462 | MS.gene050479:CDS |
| CAGCTTGGGGAGTCCCTTCC+TGG | 0.263990 | 7.3:+2123742 | MS.gene050479:CDS |
| CAATAAACACATGGTTGTTT+TGG | 0.272587 | 7.3:+2122059 | None:intergenic |
| AACTCTTCTGGGGACAAGTT+TGG | 0.282864 | 7.3:-2122756 | None:intergenic |
| GTTATCTTCATTTGGTTTAT+CGG | 0.283666 | 7.3:+2124602 | MS.gene050479:CDS |
| ATGAAACACAGGCTCCTATT+TGG | 0.301950 | 7.3:-2125671 | None:intergenic |
| ATTTGGAGGTTATCTTCATT+TGG | 0.317707 | 7.3:+2124594 | MS.gene050479:CDS |
| GCTATCCGGTCATTCCTAAA+AGG | 0.323926 | 7.3:+2125626 | MS.gene050479:CDS |
| GCTACATGGTACTATGGATT+AGG | 0.324256 | 7.3:+2124839 | MS.gene050479:CDS |
| CTCCATTTCCGGAACAGGTC+TGG | 0.335358 | 7.3:-2122784 | None:intergenic |
| TGCAAGGTTCCTACCTATTT+GGG | 0.337684 | 7.3:+2124433 | MS.gene050479:CDS |
| TTGATCTAATCTTATAATAA+AGG | 0.339906 | 7.3:-2124019 | None:intergenic |
| TTCACAAGAAAATAGTCATT+AGG | 0.353485 | 7.3:-2123784 | None:intergenic |
| CTTGGGACTGGTGGACATCT+TGG | 0.360363 | 7.3:+2123546 | MS.gene050479:CDS |
| ACGGCTGCTGTCACCTCTCT+TGG | 0.369685 | 7.3:+2124481 | MS.gene050479:CDS |
| GGTTAGGTTTGATGGTTGTC+GGG | 0.371768 | 7.3:+2125558 | MS.gene050479:intron |
| CTCTTAGGACGAACACGATT+AGG | 0.374110 | 7.3:-2122259 | None:intergenic |
| CAGTCCACGGCATCACTTGC+CGG | 0.376274 | 7.3:-2124525 | None:intergenic |
| ATCCAGACCTGTTCCGGAAA+TGG | 0.383357 | 7.3:+2122782 | MS.gene050479:CDS |
| GTTGAAATCCAGACCTGTTC+CGG | 0.386303 | 7.3:+2122776 | MS.gene050479:CDS |
| CCACCAGTCCCAAGGCTTAA+GGG | 0.387655 | 7.3:-2123537 | None:intergenic |
| AGGTTAGGTTTGATGGTTGT+CGG | 0.394243 | 7.3:+2125557 | MS.gene050479:intron |
| GTCTGGATTTCAACTCTTCT+GGG | 0.395720 | 7.3:-2122767 | None:intergenic |
| ATTGGGAAAGTCAGAGTAAT+AGG | 0.399496 | 7.3:-2122718 | None:intergenic |
| AGTCTCTCCATTTCCGGAAC+AGG | 0.401528 | 7.3:-2122789 | None:intergenic |
| TAAACACCCCAAAATCTCTT+AGG | 0.401974 | 7.3:-2122274 | None:intergenic |
| GACAGAAATACCGCCCAAAT+AGG | 0.402864 | 7.3:-2124446 | None:intergenic |
| AGGATGTTAGGGAACAGCTT+GGG | 0.405735 | 7.3:+2123728 | MS.gene050479:intron |
| TCCACCAGTCCCAAGGCTTA+AGG | 0.409126 | 7.3:-2123538 | None:intergenic |
| ATTACCTGCCAGACATCAAC+AGG | 0.412860 | 7.3:-2123578 | None:intergenic |
| CTACATGGTACTATGGATTA+GGG | 0.418213 | 7.3:+2124840 | MS.gene050479:CDS |
| TGGATTAGGGATGGCCTTGT+TGG | 0.421428 | 7.3:+2124853 | MS.gene050479:CDS |
| TGGGGTTCTTCAGGATGTTA+GGG | 0.430964 | 7.3:+2123717 | MS.gene050479:intron |
| CATTCTGAGAGGTTGAATTC+CGG | 0.440137 | 7.3:+2122521 | MS.gene050479:CDS |
| CACTGGGACCCCTTAAGCCT+TGG | 0.445458 | 7.3:+2123528 | MS.gene050479:CDS |
| AGTCCACGGCATCACTTGCC+GGG | 0.455569 | 7.3:-2124524 | None:intergenic |
| AGTGGGATATTGCTCCAAAT+AGG | 0.456014 | 7.3:+2125657 | MS.gene050479:CDS |
| GATGCTGCTACATGGTACTA+TGG | 0.457667 | 7.3:+2124833 | MS.gene050479:CDS |
| CGGCAAGTGATGCCGTGGAC+TGG | 0.461514 | 7.3:+2124526 | MS.gene050479:CDS |
| TCTTCATTTGGTTTATCGGT+GGG | 0.463764 | 7.3:+2124606 | MS.gene050479:CDS |
| CTGCTATAATTCACTTATGA+AGG | 0.468846 | 7.3:+2123846 | MS.gene050479:CDS |
| GATGTTGAGATAGTTGTATA+AGG | 0.472611 | 7.3:-2124053 | None:intergenic |
| ATGTTTATTGTATTATTTGG+AGG | 0.476336 | 7.3:+2124580 | MS.gene050479:CDS |
| GCCGCCTCTTGTTCCAGGAA+GGG | 0.477864 | 7.3:-2123755 | None:intergenic |
| CTTCTGAACATCTTGCTATC+CGG | 0.479536 | 7.3:+2125612 | MS.gene050479:CDS |
| GAGGTTGAATTCCGGAGTTA+TGG | 0.484212 | 7.3:+2122529 | MS.gene050479:CDS |
| ATCTTCATTTGGTTTATCGG+TGG | 0.485026 | 7.3:+2124605 | MS.gene050479:CDS |
| AGGAATCAATTCAATCCATC+AGG | 0.487708 | 7.3:+2124076 | MS.gene050479:CDS |
| GGGATGGCCTTGTTGGCCAT+TGG | 0.489010 | 7.3:+2124860 | MS.gene050479:CDS |
| GACCCCTTAAGCCTTGGGAC+TGG | 0.492980 | 7.3:+2123534 | MS.gene050479:CDS |
| ATAATAAAGCACAGAATGGT+AGG | 0.502328 | 7.3:-2123819 | None:intergenic |
| TTGCAGAATCGAGAGTACTT+TGG | 0.502931 | 7.3:+2123957 | MS.gene050479:intron |
| GAGATAGTTGTATAAGGAAG+TGG | 0.503037 | 7.3:-2124047 | None:intergenic |
| GGCCGCCTCTTGTTCCAGGA+AGG | 0.503271 | 7.3:-2123756 | None:intergenic |
| ACTGGGACCCCTTAAGCCTT+GGG | 0.507201 | 7.3:+2123529 | MS.gene050479:CDS |
| CCCTTAAGCCTTGGGACTGG+TGG | 0.507393 | 7.3:+2123537 | MS.gene050479:CDS |
| GCTCCCTATGTGATCAAGTC+AGG | 0.510268 | 7.3:+2123994 | MS.gene050479:CDS |
| TATACAACTATCTCAACATC+AGG | 0.514583 | 7.3:+2124056 | MS.gene050479:CDS |
| TATTATAAGATTAGATCAAG+TGG | 0.524639 | 7.3:+2124023 | MS.gene050479:CDS |
| CTTCATTTGGTTTATCGGTG+GGG | 0.530069 | 7.3:+2124607 | MS.gene050479:CDS |
| AGGACGAACACGATTAGGAT+TGG | 0.530654 | 7.3:-2122254 | None:intergenic |
| CCTCGATGCCGATACTATTG+TGG | 0.530695 | 7.3:+2122445 | MS.gene050479:CDS |
| CTCGAATGGTTCTCAGTGCA+AGG | 0.544103 | 7.3:+2124417 | MS.gene050479:CDS |
| GTGCCTGACTTGATCACATA+GGG | 0.545198 | 7.3:-2123997 | None:intergenic |
| TTCCCCGGCAAGTGATGCCG+TGG | 0.546088 | 7.3:+2124521 | MS.gene050479:CDS |
| GTTAGGTTTGATGGTTGTCG+GGG | 0.547123 | 7.3:+2125559 | MS.gene050479:CDS |
| GAAACCTGTTGATGTCTGGC+AGG | 0.547142 | 7.3:+2123574 | MS.gene050479:CDS |
| CAGGATGTTAGGGAACAGCT+TGG | 0.547351 | 7.3:+2123727 | MS.gene050479:intron |
| TAGAATAATAAAGCACAGAA+TGG | 0.551207 | 7.3:-2123823 | None:intergenic |
| TAGCTCTCTTGATTGTTCCC+CGG | 0.552382 | 7.3:+2124506 | MS.gene050479:CDS |
| TGGAGCACCAATGGCCAACA+AGG | 0.554201 | 7.3:-2124867 | None:intergenic |
| AGGCAAAGATGGAGCACCAA+TGG | 0.558429 | 7.3:-2124876 | None:intergenic |
| ACATTGTATAATGCAGATGT+TGG | 0.559822 | 7.3:+2122816 | MS.gene050479:CDS |
| GGATGTTAGGGAACAGCTTG+GGG | 0.560129 | 7.3:+2123729 | MS.gene050479:intron |
| CGTGTGATTCACTATACACT+GGG | 0.562412 | 7.3:+2123512 | MS.gene050479:CDS |
| TCCCTTCCTGGAACAAGAGG+CGG | 0.563395 | 7.3:+2123754 | MS.gene050479:CDS |
| TCTTTACATGCTCGCTAACA+AGG | 0.564106 | 7.3:+2122839 | MS.gene050479:CDS |
| GTGTGTTGCAGGCTGATGGT+TGG | 0.566359 | 7.3:+2122206 | MS.gene050479:intron |
| CCGTGTGATTCACTATACAC+TGG | 0.569851 | 7.3:+2123511 | MS.gene050479:CDS |
| GAATCATAATCCAAAGACTC+AGG | 0.570217 | 7.3:-2124667 | None:intergenic |
| CACCAGTCCCAAGGCTTAAG+GGG | 0.573084 | 7.3:-2123536 | None:intergenic |
| GGTGTCAAGCAGCTCTCGAA+TGG | 0.582811 | 7.3:+2124403 | MS.gene050479:intron |
| GAGTCCCTTCCTGGAACAAG+AGG | 0.585313 | 7.3:+2123751 | MS.gene050479:CDS |
| CATCATGTGATGCTGCTACA+TGG | 0.586772 | 7.3:+2124825 | MS.gene050479:CDS |
| GAAATACCGCCCAAATAGGT+AGG | 0.586979 | 7.3:-2124442 | None:intergenic |
| TCCTAAAAGGACTTGATGAG+TGG | 0.590262 | 7.3:+2125639 | MS.gene050479:CDS |
| CCTAAAAGGACTTGATGAGT+GGG | 0.598813 | 7.3:+2125640 | MS.gene050479:CDS |
| GTTGAATTCCGGAGTTATGG+TGG | 0.600129 | 7.3:+2122532 | MS.gene050479:CDS |
| ATCAAAAGCAAACCAGTCCA+CGG | 0.610095 | 7.3:-2124538 | None:intergenic |
| CAAGATGTCCACCAGTCCCA+AGG | 0.614633 | 7.3:-2123545 | None:intergenic |
| AAAACTACTAAATCTTACAC+CGG | 0.615106 | 7.3:+2122599 | MS.gene050479:CDS |
| AAAATCAACATATGAAACAC+AGG | 0.615989 | 7.3:-2125682 | None:intergenic |
| GGTGCCTGACTTGATCACAT+AGG | 0.616621 | 7.3:-2123998 | None:intergenic |
| TCTGGATTTCAACTCTTCTG+GGG | 0.623762 | 7.3:-2122766 | None:intergenic |
| CAAGAGAGCTAGTCCAAGAG+AGG | 0.633312 | 7.3:-2124494 | None:intergenic |
| ATGGTACTATGGATTAGGGA+TGG | 0.639457 | 7.3:+2124844 | MS.gene050479:CDS |
| TGGCTCGACCACCATAACTC+CGG | 0.646787 | 7.3:-2122540 | None:intergenic |
| AAGGTTCCTACCTATTTGGG+CGG | 0.652522 | 7.3:+2124436 | MS.gene050479:CDS |
| TTAGGTTTGATGGTTGTCGG+GGG | 0.659292 | 7.3:+2125560 | MS.gene050479:CDS |
| TTATCGGTGGGGAAAACATG+TGG | 0.662735 | 7.3:+2124618 | MS.gene050479:CDS |
| GTCCACGGCATCACTTGCCG+GGG | 0.666206 | 7.3:-2124523 | None:intergenic |
| ACTACTAAATCTTACACCGG+AGG | 0.674410 | 7.3:+2122602 | MS.gene050479:CDS |
| CAAAGACTCAGGAAGTGACG+AGG | 0.676512 | 7.3:-2124656 | None:intergenic |
| CCACAATAGTATCGGCATCG+AGG | 0.695118 | 7.3:-2122445 | None:intergenic |
| CCAGTGTATAGTGAATCACA+CGG | 0.701291 | 7.3:-2123511 | None:intergenic |
| CTAATTTGAAGCATTCTGAG+AGG | 0.701754 | 7.3:+2122510 | MS.gene050479:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTTAAAATTACAAAAATAAA+TGG | - | chr7.3:2125537-2125556 | None:intergenic | 10.0% |
| !!! | CTCTTTTTTTAATTAATTAA+AGG | + | chr7.3:2122145-2122164 | MS.gene050479:intron | 10.0% |
| !!! | TTTATTTTTGTAATTTTAAC+AGG | + | chr7.3:2125537-2125556 | MS.gene050479:intron | 10.0% |
| !! | ACAATGTTTATTGTATTATT+TGG | + | chr7.3:2124577-2124596 | MS.gene050479:CDS | 15.0% |
| !! | TATATCGAAATTATAAAAGT+TGG | - | chr7.3:2125173-2125192 | None:intergenic | 15.0% |
| !! | TTAATTTATACTGTATTTAC+AGG | + | chr7.3:2124785-2124804 | MS.gene050479:intron | 15.0% |
| !! | TTGATCTAATCTTATAATAA+AGG | - | chr7.3:2124022-2124041 | None:intergenic | 15.0% |
| !! | AAATATATGTATATGTCTCT+CGG | + | chr7.3:2123405-2123424 | MS.gene050479:intron | 20.0% |
| !! | AATGAAATAAAAATGCATGA+GGG | - | chr7.3:2123324-2123343 | None:intergenic | 20.0% |
| !! | ATGTTTATTGTATTATTTGG+AGG | + | chr7.3:2124580-2124599 | MS.gene050479:CDS | 20.0% |
| !! | TAAGCATATAAATCATAATG+AGG | - | chr7.3:2122962-2122981 | None:intergenic | 20.0% |
| !! | TAATAGTTAGAATACAGTAT+GGG | + | chr7.3:2123164-2123183 | MS.gene050479:intron | 20.0% |
| !! | TAATGAAATAAAAATGCATG+AGG | - | chr7.3:2123325-2123344 | None:intergenic | 20.0% |
| !! | TACAAAAAAGGTAACAATTA+AGG | + | chr7.3:2122328-2122347 | MS.gene050479:intron | 20.0% |
| !! | TATTATAAGATTAGATCAAG+TGG | + | chr7.3:2124023-2124042 | MS.gene050479:CDS | 20.0% |
| !! | TGTTATTAATGTTGTAAAAG+AGG | + | chr7.3:2123616-2123635 | MS.gene050479:intron | 20.0% |
| !! | TTAGATAATCTGAATTGAAA+AGG | - | chr7.3:2123435-2123454 | None:intergenic | 20.0% |
| !!! | AATACTTCAAACCTTTTTTT+AGG | + | chr7.3:2124998-2125017 | MS.gene050479:intron | 20.0% |
| !!! | ATACTTCAAACCTTTTTTTA+GGG | + | chr7.3:2124999-2125018 | MS.gene050479:intron | 20.0% |
| !!! | ATTGTTACCTTTTTTGTAAT+TGG | - | chr7.3:2122326-2122345 | None:intergenic | 20.0% |
| !!! | ATTTTTAACCACAATAGTAT+CGG | - | chr7.3:2122456-2122475 | None:intergenic | 20.0% |
| !!! | ATTTTTTGAGATTGTTAGTT+TGG | + | chr7.3:2122633-2122652 | MS.gene050479:intron | 20.0% |
| !!! | CGATATATTACAGTTAATTT+TGG | + | chr7.3:2125186-2125205 | MS.gene050479:intron | 20.0% |
| !!! | TATATTACAGTTAATTTTGG+TGG | + | chr7.3:2125189-2125208 | MS.gene050479:intron | 20.0% |
| !!! | TTAACTGTTTGATTTAACTA+TGG | + | chr7.3:2122178-2122197 | MS.gene050479:intron | 20.0% |
| !!! | TTGTACTTTTTAATAAGTTG+TGG | + | chr7.3:2125272-2125291 | MS.gene050479:intron | 20.0% |
| !!! | TTTTGTAATTTTAACAGGTT+AGG | + | chr7.3:2125542-2125561 | MS.gene050479:intron | 20.0% |
| !!! | TTTTTTGAGATTGTTAGTTT+GGG | + | chr7.3:2122634-2122653 | MS.gene050479:intron | 20.0% |
| ! | AAAACTACTAAATCTTACAC+CGG | + | chr7.3:2122599-2122618 | MS.gene050479:CDS | 25.0% |
| ! | AACATGACCAATTACAAAAA+AGG | + | chr7.3:2122316-2122335 | MS.gene050479:CDS | 25.0% |
| ! | AAGAAAGAAAAATACTGACA+CGG | - | chr7.3:2122122-2122141 | None:intergenic | 25.0% |
| ! | AGTATTCTCAAAGGATTTAT+CGG | + | chr7.3:2123205-2123224 | MS.gene050479:intron | 25.0% |
| ! | ATCTATATCAGTATTCTCAA+AGG | + | chr7.3:2123196-2123215 | MS.gene050479:intron | 25.0% |
| ! | ATGAAATAAAAATGCATGAG+GGG | - | chr7.3:2123323-2123342 | None:intergenic | 25.0% |
| ! | CATTAATAACAAACCAAAAG+AGG | - | chr7.3:2123607-2123626 | None:intergenic | 25.0% |
| ! | GTAATAGTTAGAATACAGTA+TGG | + | chr7.3:2123163-2123182 | MS.gene050479:intron | 25.0% |
| ! | TAGAATAATAAAGCACAGAA+TGG | - | chr7.3:2123826-2123845 | None:intergenic | 25.0% |
| ! | TTCACAAGAAAATAGTCATT+AGG | - | chr7.3:2123787-2123806 | None:intergenic | 25.0% |
| !! | CATATTAAGATTTGTTTCGA+TGG | + | chr7.3:2124382-2124401 | MS.gene050479:intron | 25.0% |
| !! | GAAAATAGTCATTAGGATTT+TGG | - | chr7.3:2123780-2123799 | None:intergenic | 25.0% |
| !! | GAAATTTTCACCCTAAAAAA+AGG | - | chr7.3:2125012-2125031 | None:intergenic | 25.0% |
| !! | GTTATCTTCATTTGGTTTAT+CGG | + | chr7.3:2124602-2124621 | MS.gene050479:CDS | 25.0% |
| !! | TTTTGTCACAAGATTTAACT+GGG | - | chr7.3:2123668-2123687 | None:intergenic | 25.0% |
| !!! | ATCTCAGTGTCTTATTTTTA+GGG | + | chr7.3:2123265-2123284 | MS.gene050479:intron | 25.0% |
| !!! | CAAAAAATTGTTTTTACCTC+CGG | - | chr7.3:2122621-2122640 | None:intergenic | 25.0% |
| !!! | GTTTTCTTCTTGTTGATTAT+TGG | + | chr7.3:2122386-2122405 | MS.gene050479:intron | 25.0% |
| !!! | TATCTCAGTGTCTTATTTTT+AGG | + | chr7.3:2123264-2123283 | MS.gene050479:intron | 25.0% |
| !!! | TTGATGATCTTTTCAAATGT+CGG | + | chr7.3:2122477-2122496 | MS.gene050479:CDS | 25.0% |
| AAAACAGTACATGTGTATAG+AGG | - | chr7.3:2125215-2125234 | None:intergenic | 30.0% | |
| AATTCGCGTTCTAATGTATT+AGG | + | chr7.3:2124933-2124952 | MS.gene050479:intron | 30.0% | |
| ACATTGTATAATGCAGATGT+TGG | + | chr7.3:2122816-2122835 | MS.gene050479:CDS | 30.0% | |
| ATAATAAAGCACAGAATGGT+AGG | - | chr7.3:2123822-2123841 | None:intergenic | 30.0% | |
| ATACTGACAATTGAGAGAAA+AGG | - | chr7.3:2125419-2125438 | None:intergenic | 30.0% | |
| ATGTCATGGATTCAAATAAC+AGG | + | chr7.3:2124311-2124330 | MS.gene050479:intron | 30.0% | |
| ATTTGCCTAATGGCTAAAAA+TGG | + | chr7.3:2123069-2123088 | MS.gene050479:intron | 30.0% | |
| ATTTGGAGGTTATCTTCATT+TGG | + | chr7.3:2124594-2124613 | MS.gene050479:CDS | 30.0% | |
| CTAACTATTACAGACAATAC+CGG | - | chr7.3:2123154-2123173 | None:intergenic | 30.0% | |
| CTGCTATAATTCACTTATGA+AGG | + | chr7.3:2123846-2123865 | MS.gene050479:CDS | 30.0% | |
| CTTTCACATTACATCTCTTA+GGG | - | chr7.3:2125342-2125361 | None:intergenic | 30.0% | |
| GATGTTGAGATAGTTGTATA+AGG | - | chr7.3:2124056-2124075 | None:intergenic | 30.0% | |
| GTTTAGATAGAATGTATGCT+AGG | + | chr7.3:2122992-2123011 | MS.gene050479:intron | 30.0% | |
| TACTGACAATTGAGAGAAAA+GGG | - | chr7.3:2125418-2125437 | None:intergenic | 30.0% | |
| TATACAACTATCTCAACATC+AGG | + | chr7.3:2124056-2124075 | MS.gene050479:CDS | 30.0% | |
| TCGTTAAAAAGAGTTTCAGA+TGG | - | chr7.3:2122563-2122582 | None:intergenic | 30.0% | |
| TCTACCTCATCAAAATCAAA+TGG | - | chr7.3:2124167-2124186 | None:intergenic | 30.0% | |
| TTAAGTAATTAGAGTCACTG+AGG | + | chr7.3:2122909-2122928 | MS.gene050479:intron | 30.0% | |
| TTGTGATTCAGCATTTAAAG+AGG | + | chr7.3:2125119-2125138 | MS.gene050479:intron | 30.0% | |
| ! | CTATACACATGTACTGTTTT+CGG | + | chr7.3:2125215-2125234 | MS.gene050479:intron | 30.0% |
| ! | CTTTTGTCACAAGATTTAAC+TGG | - | chr7.3:2123669-2123688 | None:intergenic | 30.0% |
| ! | TCTTCTTGTTGATTATTGGT+TGG | + | chr7.3:2122390-2122409 | MS.gene050479:intron | 30.0% |
| ! | TGAAACTCTTTTTAACGACA+TGG | + | chr7.3:2122565-2122584 | MS.gene050479:CDS | 30.0% |
| ! | TTTTAACAGGTTAGGTTTGA+TGG | + | chr7.3:2125550-2125569 | MS.gene050479:intron | 30.0% |
| !! | GTTTGCTTTTGATGTATGAA+TGG | + | chr7.3:2124548-2124567 | MS.gene050479:CDS | 30.0% |
| !! | TACTTTGGTTCATTTTGTAG+AGG | + | chr7.3:2123972-2123991 | MS.gene050479:CDS | 30.0% |
| !! | TTCTGTCTGTTTCTGTTTAA+CGG | + | chr7.3:2124462-2124481 | MS.gene050479:CDS | 30.0% |
| !!! | CAAGAGTAAAGCTTATTTTG+TGG | + | chr7.3:2124707-2124726 | MS.gene050479:intron | 30.0% |
| !!! | GAATAACTGCCTTGTTTTTA+AGG | + | chr7.3:2124909-2124928 | MS.gene050479:CDS | 30.0% |
| AAGAAACACAGTTGAAGACA+AGG | - | chr7.3:2122667-2122686 | None:intergenic | 35.0% | |
| ACAATTGAGAGAAAAGGGAA+AGG | - | chr7.3:2125413-2125432 | None:intergenic | 35.0% | |
| ACTACTATCATCAAATGACC+TGG | + | chr7.3:2124277-2124296 | MS.gene050479:intron | 35.0% | |
| AGGAATCAATTCAATCCATC+AGG | + | chr7.3:2124076-2124095 | MS.gene050479:CDS | 35.0% | |
| AGGCTAAAAATCAGTTTGAG+TGG | + | chr7.3:2125382-2125401 | MS.gene050479:intron | 35.0% | |
| ATCAATTCAATCCATCAGGT+TGG | + | chr7.3:2124080-2124099 | MS.gene050479:intron | 35.0% | |
| ATCTCAAGCATTAAGCACAT+AGG | + | chr7.3:2123903-2123922 | MS.gene050479:intron | 35.0% | |
| ATGTGCTTAATGCTTGAGAT+TGG | - | chr7.3:2123903-2123922 | None:intergenic | 35.0% | |
| ATTACTTAAGTTACGACACG+AGG | - | chr7.3:2122898-2122917 | None:intergenic | 35.0% | |
| ATTCTCAAAGGATTTATCGG+TGG | + | chr7.3:2123208-2123227 | MS.gene050479:intron | 35.0% | |
| ATTGGGAAAGTCAGAGTAAT+AGG | - | chr7.3:2122721-2122740 | None:intergenic | 35.0% | |
| CAAATGGCTAGATCATATGA+AGG | - | chr7.3:2124151-2124170 | None:intergenic | 35.0% | |
| CATTAGGCAAATGTAACTGT+GGG | - | chr7.3:2123061-2123080 | None:intergenic | 35.0% | |
| CCTAAGAGATGTAATGTGAA+AGG | + | chr7.3:2125340-2125359 | MS.gene050479:intron | 35.0% | |
| CCTTTCACATTACATCTCTT+AGG | - | chr7.3:2125343-2125362 | None:intergenic | 35.0% | |
| CGCGAATTACCTTAAAAACA+AGG | - | chr7.3:2124921-2124940 | None:intergenic | 35.0% | |
| GAATCATAATCCAAAGACTC+AGG | - | chr7.3:2124670-2124689 | None:intergenic | 35.0% | |
| GAGATAGTTGTATAAGGAAG+TGG | - | chr7.3:2124050-2124069 | None:intergenic | 35.0% | |
| GAGTCTTTGGATTATGATTC+TGG | + | chr7.3:2124670-2124689 | MS.gene050479:CDS | 35.0% | |
| GATTTGGATCATCTCATTTG+AGG | + | chr7.3:2124125-2124144 | MS.gene050479:intron | 35.0% | |
| GCAGTTATTCCAAAAAGACA+AGG | - | chr7.3:2124899-2124918 | None:intergenic | 35.0% | |
| GTATTTCTTCTTACCTTGGT+GGG | + | chr7.3:2123698-2123717 | MS.gene050479:intron | 35.0% | |
| TAAACACCCCAAAATCTCTT+AGG | - | chr7.3:2122277-2122296 | None:intergenic | 35.0% | |
| TATTTCTTCTTACCTTGGTG+GGG | + | chr7.3:2123699-2123718 | MS.gene050479:intron | 35.0% | |
| TCTCAAGCATTAAGCACATA+GGG | + | chr7.3:2123904-2123923 | MS.gene050479:intron | 35.0% | |
| TCTTAGGGAATTCAAATGAG+TGG | - | chr7.3:2125327-2125346 | None:intergenic | 35.0% | |
| TGACGTATTTCTTCTTACCT+TGG | + | chr7.3:2123694-2123713 | MS.gene050479:intron | 35.0% | |
| ! | ATCTTCATTTGGTTTATCGG+TGG | + | chr7.3:2124605-2124624 | MS.gene050479:CDS | 35.0% |
| ! | CTAATTTGAAGCATTCTGAG+AGG | + | chr7.3:2122510-2122529 | MS.gene050479:CDS | 35.0% |
| ! | CTACATGGTACTATGGATTA+GGG | + | chr7.3:2124840-2124859 | MS.gene050479:CDS | 35.0% |
| ! | CTTTGCATCAGAGATTTGTT+TGG | + | chr7.3:2125499-2125518 | MS.gene050479:intron | 35.0% |
| ! | GATGATCCAAATCTAAAACC+AGG | - | chr7.3:2124118-2124137 | None:intergenic | 35.0% |
| ! | TCTTCATTTGGTTTATCGGT+GGG | + | chr7.3:2124606-2124625 | MS.gene050479:CDS | 35.0% |
| ! | TGTTCGTCCTAAGAGATTTT+GGG | + | chr7.3:2122267-2122286 | MS.gene050479:CDS | 35.0% |
| !! | CTAGCCATTTGATTTTGATG+AGG | + | chr7.3:2124160-2124179 | MS.gene050479:intron | 35.0% |
| !! | GTTTTAAGCTTGCATTGGAA+AGG | + | chr7.3:2125362-2125381 | MS.gene050479:intron | 35.0% |
| !!! | CAATGCCATTTTTAGCCATT+AGG | - | chr7.3:2123077-2123096 | None:intergenic | 35.0% |
| !!! | GAAAGGTTTTAAGCTTGCAT+TGG | + | chr7.3:2125357-2125376 | MS.gene050479:intron | 35.0% |
| !!! | TTATTTTTAGGGCACCTTGT+CGG | + | chr7.3:2123276-2123295 | MS.gene050479:intron | 35.0% |
| !!! | TTTTGAAACCTGTTGATGTC+TGG | + | chr7.3:2123570-2123589 | MS.gene050479:CDS | 35.0% |
| AAGTATGCAAGTCCAACTAG+AGG | - | chr7.3:2124345-2124364 | None:intergenic | 40.0% | |
| ACTACTAAATCTTACACCGG+AGG | + | chr7.3:2122602-2122621 | MS.gene050479:CDS | 40.0% | |
| AGTGGGATATTGCTCCAAAT+AGG | + | chr7.3:2125657-2125676 | MS.gene050479:CDS | 40.0% | |
| ATAGGGCTTCGAATAAGTCT+TGG | + | chr7.3:2123921-2123940 | MS.gene050479:intron | 40.0% | |
| ATCAAAAGCAAACCAGTCCA+CGG | - | chr7.3:2124541-2124560 | None:intergenic | 40.0% | |
| ATGAAACACAGGCTCCTATT+TGG | - | chr7.3:2125674-2125693 | None:intergenic | 40.0% | |
| ATGACATGACAACATTGACC+AGG | - | chr7.3:2124298-2124317 | None:intergenic | 40.0% | |
| CAAACACAACGCCTTGTATA+AGG | + | chr7.3:2124187-2124206 | MS.gene050479:intron | 40.0% | |
| CACTGAGATAAAATCTCCAC+AGG | - | chr7.3:2123254-2123273 | None:intergenic | 40.0% | |
| CCAAAAAGACAAGGCAAAGA+TGG | - | chr7.3:2124890-2124909 | None:intergenic | 40.0% | |
| CCACAGTTACATTTGCCTAA+TGG | + | chr7.3:2123059-2123078 | MS.gene050479:intron | 40.0% | |
| CCAGTGTATAGTGAATCACA+CGG | - | chr7.3:2123514-2123533 | None:intergenic | 40.0% | |
| CCATTAGGCAAATGTAACTG+TGG | - | chr7.3:2123062-2123081 | None:intergenic | 40.0% | |
| CCTAAAAGGACTTGATGAGT+GGG | + | chr7.3:2125640-2125659 | MS.gene050479:CDS | 40.0% | |
| CGTATTTCTTCTTACCTTGG+TGG | + | chr7.3:2123697-2123716 | MS.gene050479:intron | 40.0% | |
| CGTGTGATTCACTATACACT+GGG | + | chr7.3:2123512-2123531 | MS.gene050479:CDS | 40.0% | |
| CTCCCAAAATCTCTTGTACA+GGG | + | chr7.3:2124211-2124230 | MS.gene050479:intron | 40.0% | |
| GAAAAATACTGACACGGAGA+AGG | - | chr7.3:2122116-2122135 | None:intergenic | 40.0% | |
| GCTACATGGTACTATGGATT+AGG | + | chr7.3:2124839-2124858 | MS.gene050479:CDS | 40.0% | |
| GGATCAAAAACACGTGCATT+GGG | - | chr7.3:2122738-2122757 | None:intergenic | 40.0% | |
| GGGATTCTCTCAAACAAGTT+AGG | - | chr7.3:2123041-2123060 | None:intergenic | 40.0% | |
| GTCTACTCTGATGTGATTCT+AGG | - | chr7.3:2125449-2125468 | None:intergenic | 40.0% | |
| GTCTGGATTTCAACTCTTCT+GGG | - | chr7.3:2122770-2122789 | None:intergenic | 40.0% | |
| GTGTTCTATGTCCTATTGAC+CGG | + | chr7.3:2123132-2123151 | MS.gene050479:intron | 40.0% | |
| TACAGACAATACCGGTCAAT+AGG | - | chr7.3:2123146-2123165 | None:intergenic | 40.0% | |
| TAGGGTGAAAATTTCATCCG+TGG | + | chr7.3:2125017-2125036 | MS.gene050479:intron | 40.0% | |
| TCCTAAAAGGACTTGATGAG+TGG | + | chr7.3:2125639-2125658 | MS.gene050479:CDS | 40.0% | |
| TCCTGTACATGAGAAGAACA+CGG | - | chr7.3:2124239-2124258 | None:intergenic | 40.0% | |
| TCTGGATTTCAACTCTTCTG+GGG | - | chr7.3:2122769-2122788 | None:intergenic | 40.0% | |
| TCTTTACATGCTCGCTAACA+AGG | + | chr7.3:2122839-2122858 | MS.gene050479:CDS | 40.0% | |
| TGCAAGGTTCCTACCTATTT+GGG | + | chr7.3:2124433-2124452 | MS.gene050479:CDS | 40.0% | |
| TGGATCAAAAACACGTGCAT+TGG | - | chr7.3:2122739-2122758 | None:intergenic | 40.0% | |
| TGGTCAATGTTGTCATGTCA+TGG | + | chr7.3:2124297-2124316 | MS.gene050479:intron | 40.0% | |
| ! | ACTGTGTTTCTTCCTTTTGC+AGG | + | chr7.3:2122675-2122694 | MS.gene050479:intron | 40.0% |
| ! | AGGTTAGGTTTGATGGTTGT+CGG | + | chr7.3:2125557-2125576 | MS.gene050479:intron | 40.0% |
| ! | CATTCTGAGAGGTTGAATTC+CGG | + | chr7.3:2122521-2122540 | MS.gene050479:CDS | 40.0% |
| ! | CCATCTTTGCCTTGTCTTTT+TGG | + | chr7.3:2124887-2124906 | MS.gene050479:CDS | 40.0% |
| ! | CTATGGTTTTTGTGTGTTGC+AGG | + | chr7.3:2122195-2122214 | MS.gene050479:intron | 40.0% |
| ! | CTTCATTTGGTTTATCGGTG+GGG | + | chr7.3:2124607-2124626 | MS.gene050479:CDS | 40.0% |
| ! | CTTCTGAACATCTTGCTATC+CGG | + | chr7.3:2125612-2125631 | MS.gene050479:CDS | 40.0% |
| ! | GGCAGGTAATTATCCTCTTT+TGG | + | chr7.3:2123591-2123610 | MS.gene050479:intron | 40.0% |
| ! | GTGTTCGTCCTAAGAGATTT+TGG | + | chr7.3:2122266-2122285 | MS.gene050479:CDS | 40.0% |
| ! | GTTCGTCCTAAGAGATTTTG+GGG | + | chr7.3:2122268-2122287 | MS.gene050479:CDS | 40.0% |
| !! | ATGGTACTATGGATTAGGGA+TGG | + | chr7.3:2124844-2124863 | MS.gene050479:CDS | 40.0% |
| !! | ATTTTGGGAGGCCTTATACA+AGG | - | chr7.3:2124201-2124220 | None:intergenic | 40.0% |
| !! | CAAGTCCTTTTAGGAATGAC+CGG | - | chr7.3:2125634-2125653 | None:intergenic | 40.0% |
| !! | GTTGATAGTCTCTCCATTTC+CGG | - | chr7.3:2122798-2122817 | None:intergenic | 40.0% |
| !! | TTGCAGAATCGAGAGTACTT+TGG | + | chr7.3:2123957-2123976 | MS.gene050479:intron | 40.0% |
| !!! | ATGGTTGTTTTGGTCTCTGA+TGG | + | chr7.3:2122069-2122088 | MS.gene050479:CDS | 40.0% |
| !!! | CAGTCTCCTGGTTTTAGATT+TGG | + | chr7.3:2124109-2124128 | MS.gene050479:intron | 40.0% |
| !!! | GAGAAGGTTTTTGGCGAAAT+TGG | - | chr7.3:2122100-2122119 | None:intergenic | 40.0% |
| AAGGTTCCTACCTATTTGGG+CGG | + | chr7.3:2124436-2124455 | MS.gene050479:CDS | 45.0% | |
| AATCCCTGATCTCCTGCAAA+AGG | - | chr7.3:2122690-2122709 | None:intergenic | 45.0% | |
| ACATGCTCGCTAACAAGGTA+CGG | + | chr7.3:2122844-2122863 | MS.gene050479:intron | 45.0% | |
| AGGACGAACACGATTAGGAT+TGG | - | chr7.3:2122257-2122276 | None:intergenic | 45.0% | |
| AGGATGTTAGGGAACAGCTT+GGG | + | chr7.3:2123728-2123747 | MS.gene050479:intron | 45.0% | |
| ATGCTGATCTATCCAGTGGA+TGG | + | chr7.3:2123472-2123491 | MS.gene050479:intron | 45.0% | |
| ATTACCTGCCAGACATCAAC+AGG | - | chr7.3:2123581-2123600 | None:intergenic | 45.0% | |
| CAGGATGCATAACCTCTAGT+TGG | + | chr7.3:2124330-2124349 | MS.gene050479:intron | 45.0% | |
| CATCATGTGATGCTGCTACA+TGG | + | chr7.3:2124825-2124844 | MS.gene050479:CDS | 45.0% | |
| CCGTGTGATTCACTATACAC+TGG | + | chr7.3:2123511-2123530 | MS.gene050479:CDS | 45.0% | |
| CCTCCCAAAATCTCTTGTAC+AGG | + | chr7.3:2124210-2124229 | MS.gene050479:intron | 45.0% | |
| CCTGTACATGAGAAGAACAC+GGG | - | chr7.3:2124238-2124257 | None:intergenic | 45.0% | |
| CTCTTAGGACGAACACGATT+AGG | - | chr7.3:2122262-2122281 | None:intergenic | 45.0% | |
| CTGGGTAGACATGATTGCTT+CGG | - | chr7.3:2123650-2123669 | None:intergenic | 45.0% | |
| CTGTACATGAGAAGAACACG+GGG | - | chr7.3:2124237-2124256 | None:intergenic | 45.0% | |
| CTTTCTCATCTACCATCCAC+TGG | - | chr7.3:2123487-2123506 | None:intergenic | 45.0% | |
| GAAATACCGCCCAAATAGGT+AGG | - | chr7.3:2124445-2124464 | None:intergenic | 45.0% | |
| GACAGAAATACCGCCCAAAT+AGG | - | chr7.3:2124449-2124468 | None:intergenic | 45.0% | |
| GACTGAGAAAACCAACCTGA+TGG | - | chr7.3:2124094-2124113 | None:intergenic | 45.0% | |
| GAGGTTGAATTCCGGAGTTA+TGG | + | chr7.3:2122529-2122548 | MS.gene050479:CDS | 45.0% | |
| GATGCTGCTACATGGTACTA+TGG | + | chr7.3:2124833-2124852 | MS.gene050479:CDS | 45.0% | |
| GCTAACAAGGTACGGAGTAT+AGG | + | chr7.3:2122852-2122871 | MS.gene050479:intron | 45.0% | |
| GCTATCCGGTCATTCCTAAA+AGG | + | chr7.3:2125626-2125645 | MS.gene050479:CDS | 45.0% | |
| GGTCTGGATTTCAACTCTTC+TGG | - | chr7.3:2122771-2122790 | None:intergenic | 45.0% | |
| GTGCAAGGTTCCTACCTATT+TGG | + | chr7.3:2124432-2124451 | MS.gene050479:CDS | 45.0% | |
| GTTCATGCTGATCTATCCAG+TGG | + | chr7.3:2123468-2123487 | MS.gene050479:intron | 45.0% | |
| GTTGAAATCCAGACCTGTTC+CGG | + | chr7.3:2122776-2122795 | MS.gene050479:CDS | 45.0% | |
| GTTGAATTCCGGAGTTATGG+TGG | + | chr7.3:2122532-2122551 | MS.gene050479:CDS | 45.0% | |
| TAGCTCTCTTGATTGTTCCC+CGG | + | chr7.3:2124506-2124525 | MS.gene050479:CDS | 45.0% | |
| TGCCAGTGCATGTCTGTTAT+CGG | + | chr7.3:2125060-2125079 | MS.gene050479:intron | 45.0% | |
| TGGGGTTCTTCAGGATGTTA+GGG | + | chr7.3:2123717-2123736 | MS.gene050479:intron | 45.0% | |
| TTATCGGTGGGGAAAACATG+TGG | + | chr7.3:2124618-2124637 | MS.gene050479:CDS | 45.0% | |
| TTCATCCGTGGTTCCAAAAG+TGG | + | chr7.3:2125029-2125048 | MS.gene050479:intron | 45.0% | |
| ! | AACTCTTCTGGGGACAAGTT+TGG | - | chr7.3:2122759-2122778 | None:intergenic | 45.0% |
| ! | ACTGACACGGAGAAGGTTTT+TGG | - | chr7.3:2122109-2122128 | None:intergenic | 45.0% |
| ! | CCCACTCATCAAGTCCTTTT+AGG | - | chr7.3:2125643-2125662 | None:intergenic | 45.0% |
| ! | CCTGTACAAGAGATTTTGGG+AGG | - | chr7.3:2124213-2124232 | None:intergenic | 45.0% |
| ! | CTTCCTTTTGCAGGAGATCA+GGG | + | chr7.3:2122684-2122703 | MS.gene050479:intron | 45.0% |
| ! | GGCCCTGTACAAGAGATTTT+GGG | - | chr7.3:2124216-2124235 | None:intergenic | 45.0% |
| ! | GGTTAGGTTTGATGGTTGTC+GGG | + | chr7.3:2125558-2125577 | MS.gene050479:intron | 45.0% |
| ! | GTGCCTGACTTGATCACATA+GGG | - | chr7.3:2124000-2124019 | None:intergenic | 45.0% |
| ! | GTTAGGTTTGATGGTTGTCG+GGG | + | chr7.3:2125559-2125578 | MS.gene050479:CDS | 45.0% |
| ! | TCTTCCTTTTGCAGGAGATC+AGG | + | chr7.3:2122683-2122702 | MS.gene050479:intron | 45.0% |
| ! | TTAGGTTTGATGGTTGTCGG+GGG | + | chr7.3:2125560-2125579 | MS.gene050479:CDS | 45.0% |
| ! | TTTTGTGTGTTGCAGGCTGA+TGG | + | chr7.3:2122202-2122221 | MS.gene050479:intron | 45.0% |
| !! | GAGTATAGGTACTGAGAGGA+TGG | + | chr7.3:2122866-2122885 | MS.gene050479:intron | 45.0% |
| !! | TACGGAGTATAGGTACTGAG+AGG | + | chr7.3:2122862-2122881 | MS.gene050479:intron | 45.0% |
| !! | TGGCAACAAAGAGCCACTTT+TGG | - | chr7.3:2125045-2125064 | None:intergenic | 45.0% |
| !!! | AAGAGCCACTTTTGGAACCA+CGG | - | chr7.3:2125037-2125056 | None:intergenic | 45.0% |
| !!! | AAAATAATAAAATTTTAACA+TGG | + | chr7.3:2125146-2125165 | MS.gene050479:intron | 5.0% |
| ACTCGACAGCAATTCCGACA+AGG | - | chr7.3:2123293-2123312 | None:intergenic | 50.0% | |
| AGCCGATAACAGACATGCAC+TGG | - | chr7.3:2125065-2125084 | None:intergenic | 50.0% | |
| AGTCTCTCCATTTCCGGAAC+AGG | - | chr7.3:2122792-2122811 | None:intergenic | 50.0% | |
| ATCCAGACCTGTTCCGGAAA+TGG | + | chr7.3:2122782-2122801 | MS.gene050479:CDS | 50.0% | |
| CAAAGACTCAGGAAGTGACG+AGG | - | chr7.3:2124659-2124678 | None:intergenic | 50.0% | |
| CAAGAGAGCTAGTCCAAGAG+AGG | - | chr7.3:2124497-2124516 | None:intergenic | 50.0% | |
| CAGGATGTTAGGGAACAGCT+TGG | + | chr7.3:2123727-2123746 | MS.gene050479:intron | 50.0% | |
| CCCGTGTTCTTCTCATGTAC+AGG | + | chr7.3:2124235-2124254 | MS.gene050479:intron | 50.0% | |
| CCTCGATGCCGATACTATTG+TGG | + | chr7.3:2122445-2122464 | MS.gene050479:CDS | 50.0% | |
| CTCGAATGGTTCTCAGTGCA+AGG | + | chr7.3:2124417-2124436 | MS.gene050479:CDS | 50.0% | |
| CTCGTCACTTCCTGAGTCTT+TGG | + | chr7.3:2124657-2124676 | MS.gene050479:CDS | 50.0% | |
| GAAACCTGTTGATGTCTGGC+AGG | + | chr7.3:2123574-2123593 | MS.gene050479:CDS | 50.0% | |
| GCTCCCTATGTGATCAAGTC+AGG | + | chr7.3:2123994-2124013 | MS.gene050479:CDS | 50.0% | |
| GGATGTTAGGGAACAGCTTG+GGG | + | chr7.3:2123729-2123748 | MS.gene050479:intron | 50.0% | |
| GTGAGTAGCACAGATTCCTG+TGG | + | chr7.3:2123235-2123254 | MS.gene050479:intron | 50.0% | |
| GTGGGGTTCTTCAGGATGTT+AGG | + | chr7.3:2123716-2123735 | MS.gene050479:intron | 50.0% | |
| TTACCTTGGTGGGGTTCTTC+AGG | + | chr7.3:2123708-2123727 | MS.gene050479:intron | 50.0% | |
| ! | AGGCAAAGATGGAGCACCAA+TGG | - | chr7.3:2124879-2124898 | None:intergenic | 50.0% |
| ! | GGGCCCTGTACAAGAGATTT+TGG | - | chr7.3:2124217-2124236 | None:intergenic | 50.0% |
| ! | GGTGCCTGACTTGATCACAT+AGG | - | chr7.3:2124001-2124020 | None:intergenic | 50.0% |
| !! | CCACAATAGTATCGGCATCG+AGG | - | chr7.3:2122448-2122467 | None:intergenic | 50.0% |
| !! | TGGATTAGGGATGGCCTTGT+TGG | + | chr7.3:2124853-2124872 | MS.gene050479:CDS | 50.0% |
| !!! | GGTTGGTTTTCTCAGTCTCC+TGG | + | chr7.3:2124097-2124116 | MS.gene050479:intron | 50.0% |
| ACTGGGACCCCTTAAGCCTT+GGG | + | chr7.3:2123529-2123548 | MS.gene050479:CDS | 55.0% | |
| CAAGATGTCCACCAGTCCCA+AGG | - | chr7.3:2123548-2123567 | None:intergenic | 55.0% | |
| CACCAGTCCCAAGGCTTAAG+GGG | - | chr7.3:2123539-2123558 | None:intergenic | 55.0% | |
| CATCCTGAAGAACCCCACCA+AGG | - | chr7.3:2123714-2123733 | None:intergenic | 55.0% | |
| CCACCAGTCCCAAGGCTTAA+GGG | - | chr7.3:2123540-2123559 | None:intergenic | 55.0% | |
| CTCCATTTCCGGAACAGGTC+TGG | - | chr7.3:2122787-2122806 | None:intergenic | 55.0% | |
| GAGTCCCTTCCTGGAACAAG+AGG | + | chr7.3:2123751-2123770 | MS.gene050479:CDS | 55.0% | |
| GGTGTCAAGCAGCTCTCGAA+TGG | + | chr7.3:2124403-2124422 | MS.gene050479:intron | 55.0% | |
| GTGTGTTGCAGGCTGATGGT+TGG | + | chr7.3:2122206-2122225 | MS.gene050479:intron | 55.0% | |
| TCCACCAGTCCCAAGGCTTA+AGG | - | chr7.3:2123541-2123560 | None:intergenic | 55.0% | |
| TCCCTTCCTGGAACAAGAGG+CGG | + | chr7.3:2123754-2123773 | MS.gene050479:CDS | 55.0% | |
| TGGCTCGACCACCATAACTC+CGG | - | chr7.3:2122543-2122562 | None:intergenic | 55.0% | |
| ! | CTTGGGACTGGTGGACATCT+TGG | + | chr7.3:2123546-2123565 | MS.gene050479:CDS | 55.0% |
| ! | TGGAGCACCAATGGCCAACA+AGG | - | chr7.3:2124870-2124889 | None:intergenic | 55.0% |
| ! | TTTTGGCCGCCTCTTGTTCC+AGG | - | chr7.3:2123763-2123782 | None:intergenic | 55.0% |
| !! | GGTTGTCGGGGGCATCATAT+TGG | + | chr7.3:2125571-2125590 | MS.gene050479:CDS | 55.0% |
| ACGGCTGCTGTCACCTCTCT+TGG | + | chr7.3:2124481-2124500 | MS.gene050479:CDS | 60.0% | |
| AGTCCACGGCATCACTTGCC+GGG | - | chr7.3:2124527-2124546 | None:intergenic | 60.0% | |
| CACTGGGACCCCTTAAGCCT+TGG | + | chr7.3:2123528-2123547 | MS.gene050479:CDS | 60.0% | |
| CAGTCCACGGCATCACTTGC+CGG | - | chr7.3:2124528-2124547 | None:intergenic | 60.0% | |
| CCCTTAAGCCTTGGGACTGG+TGG | + | chr7.3:2123537-2123556 | MS.gene050479:CDS | 60.0% | |
| GACCCCTTAAGCCTTGGGAC+TGG | + | chr7.3:2123534-2123553 | MS.gene050479:CDS | 60.0% | |
| GCCGCCTCTTGTTCCAGGAA+GGG | - | chr7.3:2123758-2123777 | None:intergenic | 60.0% | |
| !! | GGGATGGCCTTGTTGGCCAT+TGG | + | chr7.3:2124860-2124879 | MS.gene050479:CDS | 60.0% |
| CAGCTTGGGGAGTCCCTTCC+TGG | + | chr7.3:2123742-2123761 | MS.gene050479:CDS | 65.0% | |
| CGGCAAGTGATGCCGTGGAC+TGG | + | chr7.3:2124526-2124545 | MS.gene050479:CDS | 65.0% | |
| GGCCGCCTCTTGTTCCAGGA+AGG | - | chr7.3:2123759-2123778 | None:intergenic | 65.0% | |
| GTCCACGGCATCACTTGCCG+GGG | - | chr7.3:2124526-2124545 | None:intergenic | 65.0% | |
| TTCCCCGGCAAGTGATGCCG+TGG | + | chr7.3:2124521-2124540 | MS.gene050479:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 2122069 | 2125700 | 2122069 | ID=MS.gene050479 |
| chr7.3 | mRNA | 2122069 | 2125700 | 2122069 | ID=MS.gene050479.t1;Parent=MS.gene050479 |
| chr7.3 | exon | 2122069 | 2122122 | 2122069 | ID=MS.gene050479.t1.exon1;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2122069 | 2122122 | 2122069 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| chr7.3 | exon | 2122217 | 2122337 | 2122217 | ID=MS.gene050479.t1.exon2;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2122217 | 2122337 | 2122217 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| chr7.3 | exon | 2122438 | 2122623 | 2122438 | ID=MS.gene050479.t1.exon3;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2122438 | 2122623 | 2122438 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| chr7.3 | exon | 2122697 | 2122860 | 2122697 | ID=MS.gene050479.t1.exon4;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2122697 | 2122860 | 2122697 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| chr7.3 | exon | 2123488 | 2123595 | 2123488 | ID=MS.gene050479.t1.exon5;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2123488 | 2123595 | 2123488 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| chr7.3 | exon | 2123730 | 2123867 | 2123730 | ID=MS.gene050479.t1.exon6;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2123730 | 2123867 | 2123730 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| chr7.3 | exon | 2123963 | 2124097 | 2123963 | ID=MS.gene050479.t1.exon7;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2123963 | 2124097 | 2123963 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| chr7.3 | exon | 2124415 | 2124697 | 2124415 | ID=MS.gene050479.t1.exon8;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2124415 | 2124697 | 2124415 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| chr7.3 | exon | 2124807 | 2124930 | 2124807 | ID=MS.gene050479.t1.exon9;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2124807 | 2124930 | 2124807 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| chr7.3 | exon | 2125559 | 2125700 | 2125559 | ID=MS.gene050479.t1.exon10;Parent=MS.gene050479.t1 |
| chr7.3 | CDS | 2125559 | 2125700 | 2125559 | ID=cds.MS.gene050479.t1;Parent=MS.gene050479.t1 |
| Gene Sequence |
| Protein sequence |
