Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92003.t1 | KEH21833.1 | 33.1 | 761 | 67 | 6 | 15 | 336 | 238 | 995 | 2.40E-77 | 299.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92003.t1 | Q9FG91 | 24.6 | 317 | 173 | 12 | 15 | 279 | 183 | 485 | 8.6e-12 | 72.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92003.t1 | A0A072TY88 | 33.1 | 761 | 67 | 6 | 15 | 336 | 238 | 995 | 1.7e-77 | 299.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053356 | MS.gene92003 | 0.801192 | 1.01E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92003.t1 | MTR_7g018780 | 68.617 | 188 | 19 | 2 | 15 | 162 | 218 | 405 | 1.29e-75 | 246 |
| MS.gene92003.t1 | MTR_7g018780 | 55.696 | 79 | 30 | 2 | 134 | 211 | 605 | 679 | 8.81e-13 | 69.7 |
| MS.gene92003.t1 | MTR_7g018780 | 68.617 | 188 | 19 | 2 | 15 | 162 | 276 | 463 | 1.98e-75 | 247 |
| MS.gene92003.t1 | MTR_7g018780 | 55.696 | 79 | 30 | 2 | 134 | 211 | 663 | 737 | 9.45e-13 | 69.7 |
| MS.gene92003.t1 | MTR_7g018850 | 68.617 | 188 | 19 | 2 | 15 | 162 | 238 | 425 | 4.76e-73 | 244 |
| MS.gene92003.t1 | MTR_7g018850 | 64.667 | 150 | 50 | 2 | 187 | 336 | 849 | 995 | 7.07e-50 | 179 |
| MS.gene92003.t1 | MTR_7g018850 | 57.534 | 73 | 26 | 2 | 134 | 205 | 621 | 689 | 1.48e-12 | 69.3 |
| MS.gene92003.t1 | MTR_7g018670 | 63.265 | 196 | 31 | 3 | 15 | 171 | 154 | 347 | 2.07e-67 | 226 |
| MS.gene92003.t1 | MTR_7g018810 | 61.244 | 209 | 27 | 3 | 15 | 171 | 250 | 456 | 9.06e-67 | 227 |
| MS.gene92003.t1 | MTR_7g018810 | 58.667 | 150 | 56 | 4 | 187 | 335 | 871 | 1015 | 1.84e-39 | 149 |
| MS.gene92003.t1 | MTR_7g018840 | 60.664 | 211 | 26 | 4 | 15 | 171 | 118 | 325 | 4.87e-64 | 220 |
| MS.gene92003.t1 | MTR_7g018840 | 59.355 | 155 | 56 | 5 | 187 | 339 | 1055 | 1204 | 8.09e-41 | 153 |
| MS.gene92003.t1 | MTR_7g018840 | 50.279 | 179 | 32 | 4 | 45 | 171 | 467 | 640 | 4.63e-37 | 142 |
| MS.gene92003.t1 | MTR_7g018760 | 68.902 | 164 | 47 | 3 | 187 | 349 | 127 | 287 | 3.74e-61 | 197 |
| MS.gene92003.t1 | MTR_7g018660 | 67.114 | 149 | 47 | 1 | 187 | 335 | 3 | 149 | 3.82e-60 | 190 |
| MS.gene92003.t1 | MTR_7g018640 | 54.762 | 210 | 50 | 3 | 15 | 184 | 1168 | 1372 | 2.56e-55 | 195 |
| MS.gene92003.t1 | MTR_7g018640 | 66.667 | 159 | 50 | 2 | 187 | 345 | 1782 | 1937 | 3.41e-55 | 195 |
| MS.gene92003.t1 | MTR_7g018640 | 58.201 | 189 | 36 | 4 | 15 | 161 | 127 | 314 | 8.34e-50 | 179 |
| MS.gene92003.t1 | MTR_7g018640 | 57.764 | 161 | 51 | 2 | 188 | 348 | 746 | 889 | 3.85e-45 | 166 |
| MS.gene92003.t1 | MTR_7g018650 | 63.478 | 115 | 33 | 3 | 15 | 124 | 4 | 114 | 4.19e-38 | 133 |
| MS.gene92003.t1 | MTR_1g031830 | 32.370 | 173 | 81 | 3 | 15 | 151 | 223 | 395 | 1.77e-16 | 81.3 |
| MS.gene92003.t1 | MTR_3g055230 | 30.636 | 173 | 83 | 2 | 16 | 151 | 183 | 355 | 6.80e-16 | 79.7 |
| MS.gene92003.t1 | MTR_3g055230 | 30.636 | 173 | 83 | 2 | 16 | 151 | 183 | 355 | 7.26e-16 | 79.3 |
| MS.gene92003.t1 | MTR_3g055230 | 30.636 | 173 | 83 | 2 | 16 | 151 | 183 | 355 | 7.34e-16 | 79.3 |
| MS.gene92003.t1 | MTR_3g055230 | 30.636 | 173 | 83 | 2 | 16 | 151 | 183 | 355 | 9.20e-16 | 79.0 |
| MS.gene92003.t1 | MTR_3g053180 | 28.085 | 235 | 123 | 6 | 16 | 213 | 184 | 409 | 5.20e-15 | 77.0 |
| MS.gene92003.t1 | MTR_3g053180 | 28.085 | 235 | 123 | 6 | 16 | 213 | 184 | 409 | 5.53e-15 | 76.6 |
| MS.gene92003.t1 | MTR_8g464870 | 36.752 | 117 | 66 | 1 | 15 | 123 | 182 | 298 | 2.22e-14 | 75.1 |
| MS.gene92003.t1 | MTR_3g464870 | 33.140 | 172 | 79 | 2 | 16 | 151 | 179 | 350 | 4.76e-14 | 73.9 |
| MS.gene92003.t1 | MTR_3g464870 | 33.140 | 172 | 79 | 2 | 16 | 151 | 179 | 350 | 5.44e-14 | 73.9 |
| MS.gene92003.t1 | MTR_5g092310 | 39.344 | 122 | 66 | 3 | 16 | 131 | 66 | 185 | 2.16e-13 | 71.2 |
| MS.gene92003.t1 | MTR_3g464950 | 38.793 | 116 | 64 | 1 | 15 | 123 | 178 | 293 | 4.09e-13 | 71.2 |
| MS.gene92003.t1 | MTR_3g062220 | 32.298 | 161 | 93 | 3 | 15 | 159 | 177 | 337 | 6.85e-13 | 70.1 |
| MS.gene92003.t1 | MTR_5g092190 | 29.586 | 169 | 85 | 3 | 16 | 151 | 178 | 345 | 1.79e-12 | 69.3 |
| MS.gene92003.t1 | MTR_5g092190 | 35.398 | 113 | 68 | 1 | 16 | 123 | 1555 | 1667 | 1.04e-11 | 67.0 |
| MS.gene92003.t1 | MTR_3g062420 | 32.298 | 161 | 93 | 4 | 15 | 159 | 177 | 337 | 1.81e-12 | 69.3 |
| MS.gene92003.t1 | MTR_3g451150 | 29.379 | 177 | 89 | 2 | 15 | 155 | 177 | 353 | 3.17e-12 | 68.6 |
| MS.gene92003.t1 | MTR_3g452250 | 29.379 | 177 | 89 | 2 | 15 | 155 | 177 | 353 | 3.17e-12 | 68.6 |
| MS.gene92003.t1 | MTR_3g062320 | 31.285 | 179 | 81 | 4 | 15 | 151 | 177 | 355 | 3.65e-12 | 68.2 |
| MS.gene92003.t1 | MTR_3g063010 | 31.792 | 173 | 82 | 3 | 15 | 151 | 177 | 349 | 4.36e-12 | 68.2 |
| MS.gene92003.t1 | MTR_3g062990 | 34.722 | 144 | 72 | 3 | 15 | 151 | 235 | 363 | 4.61e-12 | 67.8 |
| MS.gene92003.t1 | MTR_3g053200 | 25.738 | 237 | 126 | 6 | 16 | 213 | 184 | 409 | 5.15e-12 | 67.8 |
| MS.gene92003.t1 | MTR_3g464920 | 31.395 | 172 | 82 | 2 | 16 | 151 | 179 | 350 | 6.16e-12 | 67.4 |
| MS.gene92003.t1 | MTR_3g467640 | 30.636 | 173 | 84 | 3 | 15 | 151 | 22 | 194 | 6.87e-12 | 67.4 |
| MS.gene92003.t1 | MTR_3g464810 | 38.261 | 115 | 64 | 2 | 15 | 122 | 178 | 292 | 7.64e-12 | 67.4 |
| MS.gene92003.t1 | MTR_5g085400 | 27.189 | 217 | 108 | 5 | 16 | 184 | 183 | 397 | 1.51e-11 | 66.2 |
| MS.gene92003.t1 | MTR_5g036460 | 26.316 | 171 | 93 | 2 | 15 | 152 | 231 | 401 | 1.53e-11 | 66.2 |
| MS.gene92003.t1 | MTR_1g036860 | 26.471 | 238 | 129 | 4 | 15 | 215 | 183 | 411 | 2.24e-11 | 65.1 |
| MS.gene92003.t1 | MTR_3g062010 | 28.902 | 173 | 87 | 3 | 15 | 151 | 177 | 349 | 2.81e-11 | 65.5 |
| MS.gene92003.t1 | MTR_3g062970 | 30.058 | 173 | 85 | 3 | 15 | 151 | 177 | 349 | 2.96e-11 | 65.5 |
| MS.gene92003.t1 | MTR_7g026250 | 31.677 | 161 | 94 | 4 | 15 | 159 | 152 | 312 | 3.27e-11 | 65.1 |
| MS.gene92003.t1 | MTR_3g466520 | 37.168 | 113 | 64 | 1 | 15 | 120 | 176 | 288 | 3.31e-11 | 65.1 |
| MS.gene92003.t1 | MTR_0006s0240 | 32.639 | 144 | 86 | 4 | 15 | 151 | 184 | 323 | 3.91e-11 | 65.1 |
| MS.gene92003.t1 | MTR_3g464840 | 38.596 | 114 | 63 | 2 | 16 | 122 | 178 | 291 | 8.44e-11 | 63.9 |
| MS.gene92003.t1 | MTR_3g055210 | 34.483 | 116 | 53 | 2 | 16 | 123 | 188 | 288 | 9.78e-11 | 63.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92003.t1 | AT5G43730 | 30.049 | 203 | 95 | 8 | 2 | 162 | 172 | 369 | 3.30e-13 | 71.2 |
| MS.gene92003.t1 | AT5G43730 | 30.049 | 203 | 95 | 8 | 2 | 162 | 172 | 369 | 3.30e-13 | 71.2 |
| MS.gene92003.t1 | AT5G43730 | 30.049 | 203 | 95 | 8 | 2 | 162 | 172 | 369 | 3.30e-13 | 71.2 |
| MS.gene92003.t1 | AT5G43730 | 30.049 | 203 | 95 | 8 | 2 | 162 | 172 | 369 | 3.30e-13 | 71.2 |
| MS.gene92003.t1 | AT5G43730 | 30.049 | 203 | 95 | 8 | 2 | 162 | 172 | 369 | 3.30e-13 | 71.2 |
| MS.gene92003.t1 | AT4G27220 | 32.308 | 195 | 83 | 7 | 15 | 165 | 145 | 334 | 9.56e-13 | 69.7 |
| MS.gene92003.t1 | AT4G27220 | 32.308 | 195 | 83 | 7 | 15 | 165 | 153 | 342 | 1.09e-12 | 69.7 |
| MS.gene92003.t1 | AT4G10780 | 30.508 | 177 | 81 | 6 | 15 | 150 | 184 | 359 | 2.97e-12 | 68.2 |
| MS.gene92003.t1 | AT4G10780 | 30.508 | 177 | 81 | 6 | 15 | 150 | 184 | 359 | 3.03e-12 | 68.2 |
| MS.gene92003.t1 | AT5G43740 | 28.947 | 190 | 90 | 6 | 15 | 162 | 182 | 368 | 3.36e-12 | 68.2 |
| MS.gene92003.t1 | AT5G43740 | 28.947 | 190 | 90 | 6 | 15 | 162 | 182 | 368 | 3.36e-12 | 68.2 |
| MS.gene92003.t1 | AT1G61190 | 29.101 | 189 | 92 | 7 | 15 | 162 | 184 | 371 | 4.17e-12 | 67.8 |
| MS.gene92003.t1 | AT1G61190 | 29.101 | 189 | 92 | 7 | 15 | 162 | 184 | 371 | 4.17e-12 | 67.8 |
| MS.gene92003.t1 | AT1G61190 | 30.508 | 177 | 81 | 7 | 15 | 150 | 184 | 359 | 4.21e-12 | 67.8 |
| MS.gene92003.t1 | AT1G61190 | 29.101 | 189 | 92 | 7 | 15 | 162 | 184 | 371 | 4.24e-12 | 67.8 |
Find 65 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGAAAATCAATTCTTATTT+TGG | 0.071733 | 7.3:+79446656 | MS.gene92003:CDS |
| GTCTTTGGCATTGGAGAAAA+AGG | 0.155463 | 7.3:+79446635 | MS.gene92003:CDS |
| CAACATGTTGTCGTTTAAAA+AGG | 0.211162 | 7.3:+79448705 | MS.gene92003:CDS |
| GATTCACAACCTTGAAGTTT+TGG | 0.268081 | 7.3:+79448316 | MS.gene92003:CDS |
| AATATCATCAATACCTTTCA+TGG | 0.269134 | 7.3:-79446958 | None:intergenic |
| CAACTTTCAAGGATGTGTTT+TGG | 0.271815 | 7.3:+79446505 | MS.gene92003:CDS |
| TAGAGCTGACAACTTGTCTT+TGG | 0.301890 | 7.3:+79446620 | MS.gene92003:CDS |
| AACTTCAAGGTTGTGAATCT+TGG | 0.312800 | 7.3:-79448312 | None:intergenic |
| CGAGTTGTTAGAATCACTTT+TGG | 0.335952 | 7.3:-79446723 | None:intergenic |
| AGTTCTGCAACTTCAAAATC+TGG | 0.338634 | 7.3:+79448487 | MS.gene92003:CDS |
| GTCTTTGTCATTGGCATACA+TGG | 0.340418 | 7.3:+79446419 | MS.gene92003:CDS |
| TTCTAAGTTCCAAAACTTCA+AGG | 0.366953 | 7.3:-79448325 | None:intergenic |
| ATCTTCAAAACCGTCATTGC+TGG | 0.379894 | 7.3:+79448673 | MS.gene92003:CDS |
| GAGATGTATTGTAGAGAGAT+TGG | 0.379904 | 7.3:+79446899 | MS.gene92003:CDS |
| CAACTCCAACATGGTCAACT+TGG | 0.395363 | 7.3:-79448600 | None:intergenic |
| TTGAAACATGTTCCCACATT+GGG | 0.397419 | 7.3:+79447669 | MS.gene92003:CDS |
| GATGATAAAGTCTTTGTCAT+TGG | 0.399264 | 7.3:+79446410 | None:intergenic |
| AGACAATCTTGGACACCATT+TGG | 0.407475 | 7.3:+79448392 | MS.gene92003:CDS |
| GTCATTGGCATACATGGAAT+GGG | 0.454355 | 7.3:+79446425 | MS.gene92003:CDS |
| GTTGTGAATCTTGGTGCAAA+AGG | 0.457874 | 7.3:-79448303 | None:intergenic |
| AAAGAGGAAATCAACTTTCA+AGG | 0.457896 | 7.3:+79446494 | MS.gene92003:CDS |
| CACATGGCTGGCAATCCATC+TGG | 0.458470 | 7.3:-79446764 | None:intergenic |
| CCTACATTAGAGCTCATAGA+TGG | 0.461608 | 7.3:+79448731 | MS.gene92003:CDS |
| AACTGACGACCGTGTGCAAA+GGG | 0.464440 | 7.3:+79448636 | MS.gene92003:CDS |
| TGACAACTTGTCTTTGGCAT+TGG | 0.484041 | 7.3:+79446626 | MS.gene92003:CDS |
| ACTACAAGCATTGTCAAGAT+TGG | 0.485262 | 7.3:+79447695 | MS.gene92003:CDS |
| TGTCATTGGCATACATGGAA+TGG | 0.485633 | 7.3:+79446424 | MS.gene92003:CDS |
| ATGTATTGTAGAGAGATTGG+AGG | 0.494288 | 7.3:+79446902 | MS.gene92003:CDS |
| TATATTGATTTGCAGAAGGT+GGG | 0.498959 | 7.3:+79446693 | MS.gene92003:CDS |
| TTGTTGATGTTAGACAATCT+TGG | 0.499171 | 7.3:+79448381 | MS.gene92003:CDS |
| ATATATTGATTTGCAGAAGG+TGG | 0.517383 | 7.3:+79446692 | MS.gene92003:CDS |
| TGTATTGTAGAGAGATTGGA+GGG | 0.518690 | 7.3:+79446903 | MS.gene92003:CDS |
| CAACTTGGGAAGTGAAATGA+TGG | 0.520105 | 7.3:-79448585 | None:intergenic |
| TTGCACACGGTCGTCAGTTG+TGG | 0.523884 | 7.3:-79448632 | None:intergenic |
| CCATCTATGAGCTCTAATGT+AGG | 0.525991 | 7.3:-79448731 | None:intergenic |
| GAAATATATTGATTTGCAGA+AGG | 0.536567 | 7.3:+79446689 | MS.gene92003:CDS |
| AGATAAGAGAATATGCCAAA+TGG | 0.537069 | 7.3:-79448407 | None:intergenic |
| ATTGAAACATGTTCCCACAT+TGG | 0.540588 | 7.3:+79447668 | MS.gene92003:CDS |
| ACCTTGTGGTGCTTCCTCGA+TGG | 0.551560 | 7.3:-79447733 | None:intergenic |
| TCGTAGAGGATGACGTAAAG+AGG | 0.553362 | 7.3:+79446478 | MS.gene92003:CDS |
| CAACTGACGACCGTGTGCAA+AGG | 0.555738 | 7.3:+79448635 | MS.gene92003:CDS |
| CATCTATGAGCTCTAATGTA+GGG | 0.557547 | 7.3:-79448730 | None:intergenic |
| AACTCCAACATGGTCAACTT+GGG | 0.568896 | 7.3:-79448599 | None:intergenic |
| ACCTCTTGCAATCAACGTGA+TGG | 0.569885 | 7.3:+79446929 | MS.gene92003:CDS |
| TTTATAGTATACCACATGGC+TGG | 0.574575 | 7.3:-79446776 | None:intergenic |
| TACATGGAATGGGAGGTAGT+AGG | 0.578430 | 7.3:+79446435 | MS.gene92003:CDS |
| ACTTCCCAAGTTGACCATGT+TGG | 0.578752 | 7.3:+79448595 | MS.gene92003:CDS |
| GCCATCACGTTGATTGCAAG+AGG | 0.584935 | 7.3:-79446930 | None:intergenic |
| TGCTTGTAGTTCTCCCAATG+TGG | 0.587889 | 7.3:-79447682 | None:intergenic |
| AGTTTAATTATCATCTGTGA+AGG | 0.596241 | 7.3:+79448356 | MS.gene92003:CDS |
| GAAACATGTATGTCACCAGA+TGG | 0.599209 | 7.3:+79446749 | MS.gene92003:CDS |
| TGAAGTTGCAGAACTAATTG+TGG | 0.600660 | 7.3:-79448479 | None:intergenic |
| TGCAAAGGGATTATACGTTG+TGG | 0.604247 | 7.3:+79448650 | MS.gene92003:CDS |
| GATGAGTAGACCAGCAATGA+CGG | 0.617312 | 7.3:-79448683 | None:intergenic |
| GCTTGTAGTTCTCCCAATGT+GGG | 0.618932 | 7.3:-79447681 | None:intergenic |
| GTGATGGCTAGAACCATGAA+AGG | 0.648657 | 7.3:+79446945 | MS.gene92003:CDS |
| TTTACTTGCAACTCTCGTAG+AGG | 0.651505 | 7.3:+79446464 | MS.gene92003:CDS |
| ACGTATAATCCCTTTGCACA+CGG | 0.652693 | 7.3:-79448645 | None:intergenic |
| TCCATCGAGGAAGCACCACA+AGG | 0.665646 | 7.3:+79447732 | MS.gene92003:CDS |
| ATTGGCATACATGGAATGGG+AGG | 0.673279 | 7.3:+79446428 | MS.gene92003:CDS |
| AACTTGGGAAGTGAAATGAT+GGG | 0.677990 | 7.3:-79448584 | None:intergenic |
| TGTAGTGAGCAACAGTGACG+AGG | 0.683308 | 7.3:+79448553 | MS.gene92003:CDS |
| TAACTCGTACAACTCCAACA+TGG | 0.688678 | 7.3:-79448609 | None:intergenic |
| CAGATGGATTGCCAGCCATG+TGG | 0.695055 | 7.3:+79446765 | MS.gene92003:CDS |
| CATTTCAAATACTTCCATCG+AGG | 0.708786 | 7.3:+79447719 | MS.gene92003:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAAACTTAAAAAATTTGAAA+TGG | + | chr7.3:79447004-79447023 | MS.gene92003:intron | 10.0% |
| !!! | AAACTTAAAAAATTTGAAAT+GGG | + | chr7.3:79447005-79447024 | MS.gene92003:intron | 10.0% |
| !! | AAAAACTAATCAATTTGAAA+TGG | + | chr7.3:79447760-79447779 | MS.gene92003:intron | 15.0% |
| !! | AATAGAATTAATCAAAGAAT+GGG | - | chr7.3:79447258-79447277 | None:intergenic | 15.0% |
| !! | TATGAATAAACTATCAATAT+TGG | + | chr7.3:79447554-79447573 | MS.gene92003:intron | 15.0% |
| !! | CAATAGAATTAATCAAAGAA+TGG | - | chr7.3:79447259-79447278 | None:intergenic | 20.0% |
| !! | CACTAAATTTATAATCAAGA+TGG | - | chr7.3:79447498-79447517 | None:intergenic | 20.0% |
| !! | TATATCTGAAAAAAATTCTC+TGG | - | chr7.3:79447536-79447555 | None:intergenic | 20.0% |
| !! | TTAAAGTTGAAGATATTCAT+AGG | + | chr7.3:79447886-79447905 | MS.gene92003:intron | 20.0% |
| !!! | CTAAAATACTTTTCTATTTC+TGG | + | chr7.3:79448428-79448447 | MS.gene92003:CDS | 20.0% |
| !!! | GTATTGTATTTTAGTCAAAT+TGG | - | chr7.3:79447838-79447857 | None:intergenic | 20.0% |
| ! | AAGGAAAAATCTCAAAACAA+GGG | - | chr7.3:79448763-79448782 | None:intergenic | 25.0% |
| ! | AATATCATCAATACCTTTCA+TGG | - | chr7.3:79446961-79446980 | None:intergenic | 25.0% |
| ! | AGTTTAATTATCATCTGTGA+AGG | + | chr7.3:79448356-79448375 | MS.gene92003:CDS | 25.0% |
| ! | ATATAGAGGCAAATAATCAT+TGG | + | chr7.3:79448171-79448190 | MS.gene92003:intron | 25.0% |
| ! | ATGAATATGTTGGAATGTTT+AGG | + | chr7.3:79447909-79447928 | MS.gene92003:intron | 25.0% |
| ! | ATTTCATGTTGAAATGTCAT+GGG | - | chr7.3:79446867-79446886 | None:intergenic | 25.0% |
| ! | CATGATATAGCAAAAAGAAT+AGG | + | chr7.3:79446567-79446586 | MS.gene92003:CDS | 25.0% |
| ! | GATATTTATAGTATACCACA+TGG | - | chr7.3:79446783-79446802 | None:intergenic | 25.0% |
| ! | TAAGGAAAAATCTCAAAACA+AGG | - | chr7.3:79448764-79448783 | None:intergenic | 25.0% |
| ! | TATAAATGGGAATATGTGTT+TGG | + | chr7.3:79447187-79447206 | MS.gene92003:intron | 25.0% |
| ! | TATAGAGGCAAATAATCATT+GGG | + | chr7.3:79448172-79448191 | MS.gene92003:intron | 25.0% |
| ! | TATTCATAGGATGAATATGT+TGG | + | chr7.3:79447899-79447918 | MS.gene92003:intron | 25.0% |
| ! | TATTTCATGTTGAAATGTCA+TGG | - | chr7.3:79446868-79446887 | None:intergenic | 25.0% |
| ! | TTCAACTTTAATCAAAGCAT+TGG | - | chr7.3:79447877-79447896 | None:intergenic | 25.0% |
| ! | TTGACATTGGACATATAAAT+GGG | + | chr7.3:79447174-79447193 | MS.gene92003:intron | 25.0% |
| !! | AAAATCTTGACATGAGTTTT+GGG | + | chr7.3:79447973-79447992 | MS.gene92003:intron | 25.0% |
| !! | AATAGTATAGTCTTAGTTTC+AGG | - | chr7.3:79448092-79448111 | None:intergenic | 25.0% |
| !! | GTATTGATGATATTCATCAA+TGG | + | chr7.3:79446967-79446986 | MS.gene92003:intron | 25.0% |
| !! | TTCTATTGATAGTTGTGATT+TGG | + | chr7.3:79447271-79447290 | MS.gene92003:intron | 25.0% |
| !!! | ATTCTCTGGAATATAACTAA+TGG | - | chr7.3:79447522-79447541 | None:intergenic | 25.0% |
| !!! | GAAATATATTGATTTGCAGA+AGG | + | chr7.3:79446689-79446708 | MS.gene92003:CDS | 25.0% |
| !!! | GATCTGAGATAATATGTTTT+GGG | - | chr7.3:79447999-79448018 | None:intergenic | 25.0% |
| !!! | GGGAAAATCAATTCTTATTT+TGG | + | chr7.3:79446656-79446675 | MS.gene92003:CDS | 25.0% |
| !!! | TATATGCTCTAAGTTTTTTG+TGG | + | chr7.3:79448027-79448046 | MS.gene92003:intron | 25.0% |
| !!! | TGATCTGAGATAATATGTTT+TGG | - | chr7.3:79448000-79448019 | None:intergenic | 25.0% |
| !!! | TTCTCTGGAATATAACTAAT+GGG | - | chr7.3:79447521-79447540 | None:intergenic | 25.0% |
| !!! | TTCTTATTTTGGATGATGTT+TGG | + | chr7.3:79446667-79446686 | MS.gene92003:CDS | 25.0% |
| !!! | TTTTAATCGGTGTTTGAATA+TGG | + | chr7.3:79447794-79447813 | MS.gene92003:intron | 25.0% |
| AAAGAGGAAATCAACTTTCA+AGG | + | chr7.3:79446494-79446513 | MS.gene92003:CDS | 30.0% | |
| AATATGTTGGAATGTTTAGG+AGG | + | chr7.3:79447912-79447931 | MS.gene92003:intron | 30.0% | |
| ACTCTCTTTCATGATATAAC+TGG | - | chr7.3:79447327-79447346 | None:intergenic | 30.0% | |
| AGATAAGAGAATATGCCAAA+TGG | - | chr7.3:79448410-79448429 | None:intergenic | 30.0% | |
| ATCATGAAACTAGTTGACAT+TGG | + | chr7.3:79447161-79447180 | MS.gene92003:intron | 30.0% | |
| GAGTTGTTTATGCTAAAACT+TGG | + | chr7.3:79446828-79446847 | MS.gene92003:intron | 30.0% | |
| GTTGACATTGGACATATAAA+TGG | + | chr7.3:79447173-79447192 | MS.gene92003:intron | 30.0% | |
| TGATTGTAGCTCTTCATTAT+AGG | - | chr7.3:79447586-79447605 | None:intergenic | 30.0% | |
| TGGAAGAAATATTCGATGAA+GGG | + | chr7.3:79447207-79447226 | MS.gene92003:intron | 30.0% | |
| TGTGCATTATTATCCAATCA+TGG | + | chr7.3:79447116-79447135 | MS.gene92003:intron | 30.0% | |
| TTCTAAGTTCCAAAACTTCA+AGG | - | chr7.3:79448328-79448347 | None:intergenic | 30.0% | |
| TTGGAAGAAATATTCGATGA+AGG | + | chr7.3:79447206-79447225 | MS.gene92003:intron | 30.0% | |
| TTGTTGATGTTAGACAATCT+TGG | + | chr7.3:79448381-79448400 | MS.gene92003:CDS | 30.0% | |
| ! | AAAATTTGAAATGGGACAAG+AGG | + | chr7.3:79447013-79447032 | MS.gene92003:intron | 30.0% |
| ! | AACTTTCAAGGATGTGTTTT+GGG | + | chr7.3:79446506-79446525 | MS.gene92003:CDS | 30.0% |
| ! | CAACATGTTGTCGTTTAAAA+AGG | + | chr7.3:79448705-79448724 | MS.gene92003:CDS | 30.0% |
| ! | CAAGATTTTCTTGCATGTAT+TGG | - | chr7.3:79447962-79447981 | None:intergenic | 30.0% |
| ! | GAAAATCTTGACATGAGTTT+TGG | + | chr7.3:79447972-79447991 | MS.gene92003:intron | 30.0% |
| ! | GGCTTGATCTATCTTTTAAT+CGG | + | chr7.3:79447781-79447800 | MS.gene92003:intron | 30.0% |
| ! | GGTGTTTGAATATGGATTTT+GGG | + | chr7.3:79447802-79447821 | MS.gene92003:intron | 30.0% |
| ! | TTTAGAGTTGTCTCATTTGT+AGG | + | chr7.3:79447418-79447437 | MS.gene92003:intron | 30.0% |
| !! | ATATATTGATTTGCAGAAGG+TGG | + | chr7.3:79446692-79446711 | MS.gene92003:CDS | 30.0% |
| !! | GGCTTTAAGCTTATTCAATA+TGG | - | chr7.3:79447237-79447256 | None:intergenic | 30.0% |
| !! | TAATCAAAGCATTGGTATCT+TGG | - | chr7.3:79447869-79447888 | None:intergenic | 30.0% |
| !! | TATATTGATTTGCAGAAGGT+GGG | + | chr7.3:79446693-79446712 | MS.gene92003:CDS | 30.0% |
| !!! | AGTTTTGGAACTTAGAAGTT+TGG | + | chr7.3:79448331-79448350 | MS.gene92003:CDS | 30.0% |
| !!! | ATTAGTTTTTCCAAACCTTG+TGG | - | chr7.3:79447750-79447769 | None:intergenic | 30.0% |
| !!! | GAGAGTTTGTTTTGTTTATC+AGG | + | chr7.3:79448272-79448291 | MS.gene92003:intron | 30.0% |
| AACTTCAAGGTTGTGAATCT+TGG | - | chr7.3:79448315-79448334 | None:intergenic | 35.0% | |
| AACTTCTGAATGCAAACAAC+TGG | + | chr7.3:79448250-79448269 | MS.gene92003:intron | 35.0% | |
| AACTTGGGAAGTGAAATGAT+GGG | - | chr7.3:79448587-79448606 | None:intergenic | 35.0% | |
| ACAACACTTCTTCTTCTTTG+AGG | + | chr7.3:79448219-79448238 | MS.gene92003:intron | 35.0% | |
| ACATCCCTTCGTAACAAATA+TGG | + | chr7.3:79447301-79447320 | MS.gene92003:intron | 35.0% | |
| AGTTCTGCAACTTCAAAATC+TGG | + | chr7.3:79448487-79448506 | MS.gene92003:CDS | 35.0% | |
| ATAATCAAGATGGACAGCTT+CGG | - | chr7.3:79447488-79447507 | None:intergenic | 35.0% | |
| ATATCATGAAAGAGAGTCAG+AGG | + | chr7.3:79447330-79447349 | MS.gene92003:intron | 35.0% | |
| ATGCTAAAACTTGGACATGA+TGG | + | chr7.3:79446837-79446856 | MS.gene92003:intron | 35.0% | |
| ATGTATTGTAGAGAGATTGG+AGG | + | chr7.3:79446902-79446921 | MS.gene92003:CDS | 35.0% | |
| ATTATCCAATCATGGTGTGA+AGG | + | chr7.3:79447124-79447143 | MS.gene92003:intron | 35.0% | |
| ATTGAAACATGTTCCCACAT+TGG | + | chr7.3:79447668-79447687 | MS.gene92003:CDS | 35.0% | |
| CATTTCAAATACTTCCATCG+AGG | + | chr7.3:79447719-79447738 | MS.gene92003:CDS | 35.0% | |
| CCTCTATATAGAGACATGTA+AGG | - | chr7.3:79448160-79448179 | None:intergenic | 35.0% | |
| CCTTACATGTCTCTATATAG+AGG | + | chr7.3:79448157-79448176 | MS.gene92003:intron | 35.0% | |
| GAGATGTATTGTAGAGAGAT+TGG | + | chr7.3:79446899-79446918 | MS.gene92003:CDS | 35.0% | |
| GATATAGAAGACATCCTAGA+GGG | + | chr7.3:79447446-79447465 | MS.gene92003:intron | 35.0% | |
| TAGAGACATGTAAGGTCTTT+AGG | - | chr7.3:79448152-79448171 | None:intergenic | 35.0% | |
| TGAAGTTGCAGAACTAATTG+TGG | - | chr7.3:79448482-79448501 | None:intergenic | 35.0% | |
| TGATATAGAAGACATCCTAG+AGG | + | chr7.3:79447445-79447464 | MS.gene92003:intron | 35.0% | |
| TGTATTGTAGAGAGATTGGA+GGG | + | chr7.3:79446903-79446922 | MS.gene92003:CDS | 35.0% | |
| TTGAAACATGTTCCCACATT+GGG | + | chr7.3:79447669-79447688 | MS.gene92003:CDS | 35.0% | |
| TTTATAGTATACCACATGGC+TGG | - | chr7.3:79446779-79446798 | None:intergenic | 35.0% | |
| ! | ACGAAGCTTTGATAGTTTGA+TGG | + | chr7.3:79447064-79447083 | MS.gene92003:intron | 35.0% |
| ! | ACTACAAGCATTGTCAAGAT+TGG | + | chr7.3:79447695-79447714 | MS.gene92003:CDS | 35.0% |
| ! | CAACTTTCAAGGATGTGTTT+TGG | + | chr7.3:79446505-79446524 | MS.gene92003:CDS | 35.0% |
| ! | CATCTATGAGCTCTAATGTA+GGG | - | chr7.3:79448733-79448752 | None:intergenic | 35.0% |
| ! | CGAGTTGTTAGAATCACTTT+TGG | - | chr7.3:79446726-79446745 | None:intergenic | 35.0% |
| ! | CGGTGTTTGAATATGGATTT+TGG | + | chr7.3:79447801-79447820 | MS.gene92003:intron | 35.0% |
| ! | GATTCACAACCTTGAAGTTT+TGG | + | chr7.3:79448316-79448335 | MS.gene92003:CDS | 35.0% |
| ! | TCTTCTTCTTTGAGGAGAAT+TGG | + | chr7.3:79448227-79448246 | MS.gene92003:intron | 35.0% |
| ! | TCTTTGGCATTGGAGAAAAA+GGG | + | chr7.3:79446636-79446655 | MS.gene92003:CDS | 35.0% |
| !! | GCATGTATTGGTTGTAATCT+TGG | - | chr7.3:79447950-79447969 | None:intergenic | 35.0% |
| !!! | CTAAGTTTTTTGTGGAAAGG+AGG | + | chr7.3:79448035-79448054 | MS.gene92003:intron | 35.0% |
| !!! | GCTCTAAGTTTTTTGTGGAA+AGG | + | chr7.3:79448032-79448051 | MS.gene92003:intron | 35.0% |
| AACTCCAACATGGTCAACTT+GGG | - | chr7.3:79448602-79448621 | None:intergenic | 40.0% | |
| ACGTATAATCCCTTTGCACA+CGG | - | chr7.3:79448648-79448667 | None:intergenic | 40.0% | |
| AGACAATCTTGGACACCATT+TGG | + | chr7.3:79448392-79448411 | MS.gene92003:CDS | 40.0% | |
| AGAGGAATGCTATAGTGAAG+TGG | + | chr7.3:79447348-79447367 | MS.gene92003:intron | 40.0% | |
| ATCTTCAAAACCGTCATTGC+TGG | + | chr7.3:79448673-79448692 | MS.gene92003:CDS | 40.0% | |
| CAAACTCTGTGAGTGAATTG+AGG | + | chr7.3:79447610-79447629 | MS.gene92003:intron | 40.0% | |
| CAACTTGGGAAGTGAAATGA+TGG | - | chr7.3:79448588-79448607 | None:intergenic | 40.0% | |
| CATTGGTATCTTGGAGATTG+AGG | - | chr7.3:79447860-79447879 | None:intergenic | 40.0% | |
| CCTACATTAGAGCTCATAGA+TGG | + | chr7.3:79448731-79448750 | MS.gene92003:CDS | 40.0% | |
| CTCAATTCACTCACAGAGTT+TGG | - | chr7.3:79447612-79447631 | None:intergenic | 40.0% | |
| GAAACATGTATGTCACCAGA+TGG | + | chr7.3:79446749-79446768 | MS.gene92003:CDS | 40.0% | |
| GTCATTGGCATACATGGAAT+GGG | + | chr7.3:79446425-79446444 | MS.gene92003:CDS | 40.0% | |
| GTCTTAGTTTCAGGATCACT+AGG | - | chr7.3:79448083-79448102 | None:intergenic | 40.0% | |
| GTCTTTGTCATTGGCATACA+TGG | + | chr7.3:79446419-79446438 | MS.gene92003:CDS | 40.0% | |
| GTTGTAATCTTGGCAGTCAA+AGG | - | chr7.3:79447940-79447959 | None:intergenic | 40.0% | |
| TAACTCGTACAACTCCAACA+TGG | - | chr7.3:79448612-79448631 | None:intergenic | 40.0% | |
| TAGAGCTGACAACTTGTCTT+TGG | + | chr7.3:79446620-79446639 | MS.gene92003:CDS | 40.0% | |
| TCTCTACAGATGTGAAGGTT+GGG | + | chr7.3:79446806-79446825 | MS.gene92003:intron | 40.0% | |
| TGACAACTTGTCTTTGGCAT+TGG | + | chr7.3:79446626-79446645 | MS.gene92003:CDS | 40.0% | |
| TGCAAAGGGATTATACGTTG+TGG | + | chr7.3:79448650-79448669 | MS.gene92003:CDS | 40.0% | |
| TGTATGACACAGCATCACAT+AGG | - | chr7.3:79448202-79448221 | None:intergenic | 40.0% | |
| TGTCATTGGCATACATGGAA+TGG | + | chr7.3:79446424-79446443 | MS.gene92003:CDS | 40.0% | |
| TTTACTTGCAACTCTCGTAG+AGG | + | chr7.3:79446464-79446483 | MS.gene92003:CDS | 40.0% | |
| TTTGTCCTTCACACCATGAT+TGG | - | chr7.3:79447132-79447151 | None:intergenic | 40.0% | |
| ! | ACTGGCCATATTTGTTACGA+AGG | - | chr7.3:79447309-79447328 | None:intergenic | 40.0% |
| ! | ATTTGAAATGGGACAAGAGG+TGG | + | chr7.3:79447016-79447035 | MS.gene92003:intron | 40.0% |
| ! | CCATCTATGAGCTCTAATGT+AGG | - | chr7.3:79448734-79448753 | None:intergenic | 40.0% |
| ! | CTGGCCATATTTGTTACGAA+GGG | - | chr7.3:79447308-79447327 | None:intergenic | 40.0% |
| ! | GTCTTTGGCATTGGAGAAAA+AGG | + | chr7.3:79446635-79446654 | MS.gene92003:CDS | 40.0% |
| ! | GTTGTGAATCTTGGTGCAAA+AGG | - | chr7.3:79448306-79448325 | None:intergenic | 40.0% |
| ACCTCTTGCAATCAACGTGA+TGG | + | chr7.3:79446929-79446948 | MS.gene92003:CDS | 45.0% | |
| ATCGAGATACCTCTCTCACA+TGG | + | chr7.3:79447383-79447402 | MS.gene92003:intron | 45.0% | |
| ATTGCACATCCATGTGAGAG+AGG | - | chr7.3:79447395-79447414 | None:intergenic | 45.0% | |
| ATTGGCATACATGGAATGGG+AGG | + | chr7.3:79446428-79446447 | MS.gene92003:CDS | 45.0% | |
| CAACCTTCACATCTGTAGAG+AGG | - | chr7.3:79446807-79446826 | None:intergenic | 45.0% | |
| CAACTCCAACATGGTCAACT+TGG | - | chr7.3:79448603-79448622 | None:intergenic | 45.0% | |
| CTCTCTACAGATGTGAAGGT+TGG | + | chr7.3:79446805-79446824 | MS.gene92003:intron | 45.0% | |
| GACATGTAAGGTCTTTAGGC+AGG | - | chr7.3:79448148-79448167 | None:intergenic | 45.0% | |
| GATGAGTAGACCAGCAATGA+CGG | - | chr7.3:79448686-79448705 | None:intergenic | 45.0% | |
| GCTTGTAGTTCTCCCAATGT+GGG | - | chr7.3:79447684-79447703 | None:intergenic | 45.0% | |
| GTGATGGCTAGAACCATGAA+AGG | + | chr7.3:79446945-79446964 | MS.gene92003:CDS | 45.0% | |
| TACATGGAATGGGAGGTAGT+AGG | + | chr7.3:79446435-79446454 | MS.gene92003:CDS | 45.0% | |
| TCGTAGAGGATGACGTAAAG+AGG | + | chr7.3:79446478-79446497 | MS.gene92003:CDS | 45.0% | |
| TCTCCTCTCTACAGATGTGA+AGG | + | chr7.3:79446801-79446820 | MS.gene92003:intron | 45.0% | |
| TGCTTGTAGTTCTCCCAATG+TGG | - | chr7.3:79447685-79447704 | None:intergenic | 45.0% | |
| TTTAGGCAGGAGCAAGATGT+GGG | - | chr7.3:79448135-79448154 | None:intergenic | 45.0% | |
| ! | ACTTCCCAAGTTGACCATGT+TGG | + | chr7.3:79448595-79448614 | MS.gene92003:CDS | 45.0% |
| AACTGACGACCGTGTGCAAA+GGG | + | chr7.3:79448636-79448655 | MS.gene92003:CDS | 50.0% | |
| AATCAGGTGACATGCCCTCT+AGG | - | chr7.3:79447463-79447482 | None:intergenic | 50.0% | |
| ATGGACAGCTTCGGACAATC+AGG | - | chr7.3:79447479-79447498 | None:intergenic | 50.0% | |
| CTTTAGGCAGGAGCAAGATG+TGG | - | chr7.3:79448136-79448155 | None:intergenic | 50.0% | |
| TGTAGTGAGCAACAGTGACG+AGG | + | chr7.3:79448553-79448572 | MS.gene92003:CDS | 50.0% | |
| ! | GCCATCACGTTGATTGCAAG+AGG | - | chr7.3:79446933-79446952 | None:intergenic | 50.0% |
| ACCTTGTGGTGCTTCCTCGA+TGG | - | chr7.3:79447736-79447755 | None:intergenic | 55.0% | |
| CAACTGACGACCGTGTGCAA+AGG | + | chr7.3:79448635-79448654 | MS.gene92003:CDS | 55.0% | |
| CACATGGCTGGCAATCCATC+TGG | - | chr7.3:79446767-79446786 | None:intergenic | 55.0% | |
| TTGCACACGGTCGTCAGTTG+TGG | - | chr7.3:79448635-79448654 | None:intergenic | 55.0% | |
| !! | CAGATGGATTGCCAGCCATG+TGG | + | chr7.3:79446765-79446784 | MS.gene92003:CDS | 55.0% |
| !! | CGAGGAAGCACCACAAGGTT+TGG | + | chr7.3:79447737-79447756 | MS.gene92003:intron | 55.0% |
| !! | TCCATCGAGGAAGCACCACA+AGG | + | chr7.3:79447732-79447751 | MS.gene92003:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 79446411 | 79448784 | 79446411 | ID=MS.gene92003 |
| chr7.3 | mRNA | 79446411 | 79448784 | 79446411 | ID=MS.gene92003.t1;Parent=MS.gene92003 |
| chr7.3 | exon | 79446411 | 79446786 | 79446411 | ID=MS.gene92003.t1.exon1;Parent=MS.gene92003.t1 |
| chr7.3 | CDS | 79446411 | 79446786 | 79446411 | ID=cds.MS.gene92003.t1;Parent=MS.gene92003.t1 |
| chr7.3 | exon | 79446889 | 79446966 | 79446889 | ID=MS.gene92003.t1.exon2;Parent=MS.gene92003.t1 |
| chr7.3 | CDS | 79446889 | 79446966 | 79446889 | ID=cds.MS.gene92003.t1;Parent=MS.gene92003.t1 |
| chr7.3 | exon | 79447649 | 79447753 | 79447649 | ID=MS.gene92003.t1.exon3;Parent=MS.gene92003.t1 |
| chr7.3 | CDS | 79447649 | 79447753 | 79447649 | ID=cds.MS.gene92003.t1;Parent=MS.gene92003.t1 |
| chr7.3 | exon | 79448294 | 79448784 | 79448294 | ID=MS.gene92003.t1.exon4;Parent=MS.gene92003.t1 |
| chr7.3 | CDS | 79448294 | 79448784 | 79448294 | ID=cds.MS.gene92003.t1;Parent=MS.gene92003.t1 |
| Gene Sequence |
| Protein sequence |
