AlfalfaGEDB | MS.gene053356

M. sativa cultivar XinJiangDaYe / MS.gene053356

KEGG: -
GO: -
PFAM: -

Nr:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053356.t1	XP_013467077.1	97.3	113	3	0	1	113	1	113	9.30E-56	226.1

Swissprot:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053356.t1	Q9FNL8	69.6	112	32	1	1	112	1	110	1.6e-40	166.8

Trembl:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053356.t1	A0A072VH07	97.3	113	3	0	1	113	1	113	6.7e-56	226.1

TFs/TRs:

Gene ID	Type	Classification

Protein Kinases:

Gene ID	Type	Classification

Network:

Co-expression Network:

Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene051544	MS.gene053356	0.827634	1.40E-54	-1.69E-46
MS.gene052902	MS.gene053356	0.875081	4.08E-68	-1.69E-46
MS.gene053356	MS.gene058426	0.848656	5.34E-60	-1.69E-46
MS.gene053356	MS.gene063647	0.808519	2.98E-50	-1.69E-46
MS.gene053356	MS.gene065150	0.834082	3.68E-56	-1.69E-46
MS.gene053356	MS.gene069628	0.827911	1.20E-54	-1.69E-46
MS.gene053356	MS.gene069639	0.842768	2.11E-58	-1.69E-46
MS.gene053356	MS.gene09317	0.80309	4.11E-49	-1.69E-46
MS.gene053356	MS.gene23193	0.867523	1.28E-65	-1.69E-46
MS.gene053356	MS.gene25582	0.807969	3.90E-50	-1.69E-46
MS.gene053356	MS.gene25712	0.837541	4.89E-57	-1.69E-46
MS.gene053356	MS.gene25714	0.83652	8.92E-57	-1.69E-46
MS.gene053356	MS.gene41476	0.860395	2.13E-63	-1.69E-46
MS.gene053356	MS.gene53831	0.877341	6.79E-69	-1.69E-46
MS.gene053356	MS.gene53832	0.819809	9.56E-53	-1.69E-46
MS.gene053356	MS.gene54314	0.848874	4.64E-60	-1.69E-46
MS.gene053356	MS.gene54316	0.844554	7.04E-59	-1.69E-46
MS.gene053356	MS.gene62931	0.832276	1.04E-55	-1.69E-46
MS.gene053356	MS.gene64443	0.83597	1.23E-56	-1.69E-46
MS.gene053356	MS.gene65036	0.860103	2.61E-63	-1.69E-46
MS.gene053356	MS.gene65458	0.92725	1.53E-91	-1.69E-46
MS.gene053356	MS.gene70079	0.801131	1.04E-48	-1.69E-46
MS.gene053356	MS.gene71493	0.834003	3.85E-56	-1.69E-46
MS.gene053356	MS.gene71820	0.834428	3.02E-56	-1.69E-46
MS.gene053356	MS.gene73045	0.802675	5.01E-49	-1.69E-46
MS.gene053356	MS.gene73889	0.836271	1.03E-56	-1.69E-46
MS.gene053356	MS.gene74797	0.802036	6.79E-49	-1.69E-46
MS.gene053356	MS.gene79408	0.800279	1.55E-48	-1.69E-46
MS.gene053356	MS.gene79618	0.826164	3.15E-54	-1.69E-46
MS.gene053356	MS.gene80682	0.817926	2.56E-52	-1.69E-46
MS.gene053356	MS.gene80810	0.800117	1.68E-48	-1.69E-46
MS.gene053356	MS.gene83829	0.803586	3.25E-49	-1.69E-46
MS.gene053356	MS.gene87617	0.800208	1.61E-48	-1.69E-46
MS.gene053356	MS.gene88413	0.831517	1.60E-55	-1.69E-46
MS.gene053356	MS.gene92003	0.801192	1.01E-48	-1.69E-46
MS.gene053356	MS.gene92171	0.806599	7.61E-50	-1.69E-46
MS.gene053356	MS.gene95533	0.812845	3.45E-51	-1.69E-46
MS.gene053356	MS.gene99345	0.809495	1.84E-50	-1.69E-46

PPI:

Gene1	Gene2	Type

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053356.t1	MTR_1g041875	97.345	113	3	0	1	113	1	113	3.52e-74	231
MS.gene053356.t1	MTR_1g042310	79.464	112	20	1	1	112	1	109	1.79e-60	195
MS.gene053356.t1	MTR_1g075440	74.107	112	28	1	3	113	1	112	1.17e-56	185
MS.gene053356.t1	MTR_1g041815	71.818	110	31	0	3	112	1	110	2.21e-54	179
MS.gene053356.t1	MTR_1g041835	70.000	110	33	0	3	112	1	110	2.58e-53	176
MS.gene053356.t1	MTR_7g098180	68.807	109	34	0	4	112	6	114	2.46e-50	168
MS.gene053356.t1	MTR_7g098160	67.961	103	33	0	10	112	14	116	2.58e-48	163
MS.gene053356.t1	MTR_7g098150	67.961	103	33	0	10	112	14	116	4.97e-48	160
MS.gene053356.t1	MTR_7g098090	67.961	103	33	0	10	112	14	116	6.42e-48	162
MS.gene053356.t1	MTR_7g098220	65.455	110	38	0	3	112	4	113	1.15e-47	161
MS.gene053356.t1	MTR_7g098200	67.647	102	33	0	10	111	10	111	1.54e-45	155
MS.gene053356.t1	MTR_7g098200	67.647	102	33	0	10	111	10	111	1.71e-45	155
MS.gene053356.t1	MTR_7g098040	66.667	102	34	0	10	111	15	116	2.04e-44	152
MS.gene053356.t1	MTR_3g072300	58.252	103	43	0	10	112	5	107	6.97e-39	137
MS.gene053356.t1	MTR_1g042310	79.167	72	15	0	41	112	1	72	1.87e-36	130
MS.gene053356.t1	MTR_1g041885	87.879	66	8	0	48	113	1	66	1.01e-35	128
MS.gene053356.t1	MTR_3g462710	48.182	110	54	1	3	112	1	107	6.33e-33	121
MS.gene053356.t1	MTR_1g042310	80.000	65	13	0	48	112	1	65	2.67e-32	119
MS.gene053356.t1	MTR_3g005010	50.000	100	50	0	13	112	14	113	1.43e-29	111
MS.gene053356.t1	MTR_7g098230	68.000	75	24	0	37	111	34	108	8.17e-29	109
MS.gene053356.t1	MTR_7g098220	66.667	69	23	0	44	112	1	69	6.25e-28	107
MS.gene053356.t1	MTR_7g067010	45.545	101	55	0	12	112	7	107	1.76e-27	105
MS.gene053356.t1	MTR_4g015080	44.037	109	57	1	4	112	13	117	6.51e-27	104
MS.gene053356.t1	MTR_4g033395	42.857	98	56	0	15	112	18	115	2.67e-25	99.4
MS.gene053356.t1	MTR_7g065080	44.118	102	57	0	11	112	13	114	5.65e-25	99.0
MS.gene053356.t1	MTR_3g069500	43.878	98	55	0	15	112	21	118	1.75e-24	97.4
MS.gene053356.t1	MTR_4g033375	41.837	98	57	0	15	112	18	115	3.86e-24	96.3
MS.gene053356.t1	MTR_0294s0020	43.750	96	54	0	13	108	15	110	1.01e-23	95.1
MS.gene053356.t1	MTR_4g033310	42.553	94	54	0	15	108	17	110	1.98e-23	94.4
MS.gene053356.t1	MTR_3g069420	39.394	99	60	0	15	113	20	118	2.76e-23	94.0
MS.gene053356.t1	MTR_4g019580	40.196	102	61	0	11	112	18	119	2.84e-23	94.0
MS.gene053356.t1	MTR_4g033315	42.553	94	54	0	15	108	17	110	3.07e-23	94.0
MS.gene053356.t1	MTR_4g033310	42.553	94	54	0	15	108	17	110	3.07e-23	94.0
MS.gene053356.t1	MTR_4g033325	43.617	94	53	0	15	108	17	110	1.63e-22	91.7
MS.gene053356.t1	MTR_4g033330	41.489	94	55	0	15	108	17	110	3.13e-22	90.9
MS.gene053356.t1	MTR_3g069440	41.489	94	55	0	15	108	19	112	1.79e-21	89.0
MS.gene053356.t1	MTR_4g024930	37.963	108	66	1	4	111	12	118	7.24e-20	84.3
MS.gene053356.t1	MTR_3g112460	31.429	105	72	0	7	111	1	105	1.79e-19	83.2
MS.gene053356.t1	MTR_7g006540	41.667	108	61	2	8	113	40	147	2.21e-19	82.8
MS.gene053356.t1	MTR_8g038880	45.882	85	46	0	28	112	19	103	3.49e-19	82.4
MS.gene053356.t1	MTR_5g014150	33.981	103	68	0	10	112	25	127	5.20e-19	82.0
MS.gene053356.t1	MTR_5g012290	44.565	92	51	0	19	110	17	108	1.18e-18	80.9
MS.gene053356.t1	MTR_3g014790	39.796	98	57	1	15	112	5	100	2.62e-18	79.7
MS.gene053356.t1	MTR_4g101380	43.478	92	52	0	19	110	17	108	7.05e-18	78.6
MS.gene053356.t1	MTR_3g112470	31.429	105	72	0	7	111	1	105	9.19e-18	78.2
MS.gene053356.t1	MTR_7g010820	36.000	100	64	0	13	112	10	109	6.42e-17	75.9
MS.gene053356.t1	MTR_3g112450	31.373	102	70	0	10	111	4	105	6.78e-17	75.9
MS.gene053356.t1	MTR_5g012270	37.383	107	61	1	4	110	10	110	7.00e-17	75.9
MS.gene053356.t1	MTR_4g098800	35.052	97	63	0	10	106	17	113	7.88e-17	75.5
MS.gene053356.t1	MTR_4g098800	35.052	97	63	0	10	106	82	178	8.14e-17	75.5
MS.gene053356.t1	MTR_5g038060	41.860	86	50	0	27	112	29	114	2.96e-16	73.9
MS.gene053356.t1	MTR_7g088790	31.532	111	76	0	1	111	1	111	5.04e-16	73.2
MS.gene053356.t1	MTR_8g469480	37.931	87	54	0	32	118	41	127	1.02e-15	72.4
MS.gene053356.t1	MTR_7g088825	33.333	111	67	1	1	111	1	104	2.03e-15	71.6
MS.gene053356.t1	MTR_7g013270	36.782	87	55	0	20	106	81	167	2.74e-15	71.2
MS.gene053356.t1	MTR_1g116930	35.000	100	65	0	7	106	1	100	5.24e-15	70.5
MS.gene053356.t1	MTR_4g107670	34.259	108	68	1	3	110	1	105	7.62e-15	70.1
MS.gene053356.t1	MTR_7g098210	53.125	64	15	1	48	111	1	49	8.33e-15	69.7
MS.gene053356.t1	MTR_2g005130	31.200	125	85	1	1	125	12	135	9.28e-15	69.7
MS.gene053356.t1	MTR_7g098080	59.184	49	17	1	34	79	13	61	4.23e-14	62.8
MS.gene053356.t1	MTR_5g038380	39.796	98	59	0	15	112	14	111	5.10e-14	67.8
MS.gene053356.t1	MTR_8g469470	28.155	103	74	0	10	112	13	115	1.41e-13	66.2
MS.gene053356.t1	MTR_5g055000	31.868	91	62	0	21	111	10	100	3.65e-13	65.1
MS.gene053356.t1	MTR_7g064160	31.429	105	70	1	3	105	1	105	6.07e-13	61.2
MS.gene053356.t1	MTR_1g026750	35.000	80	52	0	26	105	15	94	6.50e-13	64.3
MS.gene053356.t1	MTR_7g005930	38.158	76	47	0	31	106	37	112	8.98e-13	63.9
MS.gene053356.t1	MTR_7g498330	61.905	42	15	1	11	52	11	51	1.34e-12	58.5
MS.gene053356.t1	MTR_7g088820	31.776	107	68	2	8	111	3	107	1.79e-12	63.2
MS.gene053356.t1	MTR_1g026770	38.667	75	46	0	31	105	17	91	1.83e-12	63.2
MS.gene053356.t1	MTR_5g038190	32.323	99	67	0	20	118	15	113	2.10e-12	63.2
MS.gene053356.t1	MTR_4g114340	37.500	104	62	1	3	106	1	101	9.07e-12	61.2
MS.gene053356.t1	MTR_5g085850	38.542	96	59	0	15	110	16	111	1.28e-11	60.8
MS.gene053356.t1	MTR_1g026740	35.616	73	47	0	31	103	19	91	2.55e-11	59.7
MS.gene053356.t1	MTR_7g064780	27.184	103	75	0	10	112	7	109	4.41e-11	59.3
MS.gene053356.t1	MTR_6g008690	38.462	78	48	0	35	112	13	90	4.85e-11	58.9

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene053356.t1	AT5G46040	69.643	112	32	1	1	112	1	110	3.64e-51	171
MS.gene053356.t1	AT5G46050	66.102	118	38	1	1	118	1	116	1.08e-48	164
MS.gene053356.t1	AT2G40460	60.396	101	40	0	12	112	7	107	7.47e-40	140
MS.gene053356.t1	AT2G02040	48.214	112	55	1	3	111	12	123	7.64e-33	120
MS.gene053356.t1	AT3G54140	47.748	111	55	1	3	113	1	108	3.97e-32	119
MS.gene053356.t1	AT3G54140	47.748	111	55	1	3	113	1	108	3.97e-32	119
MS.gene053356.t1	AT5G01180	48.039	102	53	0	12	113	8	109	1.69e-29	111
MS.gene053356.t1	AT5G01180	48.039	102	53	0	12	113	8	109	1.69e-29	111
MS.gene053356.t1	AT5G01180	48.039	102	53	0	12	113	8	109	1.69e-29	111
MS.gene053356.t1	AT2G02020	42.241	116	64	1	1	113	11	126	2.31e-29	110
MS.gene053356.t1	AT2G02020	42.241	116	64	1	1	113	11	126	2.45e-29	110
MS.gene053356.t1	AT1G62200	43.878	98	55	0	14	111	37	134	4.28e-25	99.4
MS.gene053356.t1	AT1G62200	43.878	98	55	0	14	111	37	134	4.62e-25	99.4
MS.gene053356.t1	AT1G62200	43.878	98	55	0	14	111	51	148	4.99e-25	99.0
MS.gene053356.t1	AT2G37900	40.777	103	61	0	10	112	19	121	1.97e-24	97.4
MS.gene053356.t1	AT3G53960	41.748	103	60	0	10	112	18	120	4.91e-24	96.3
MS.gene053356.t1	AT1G22550	43.519	108	60	1	1	108	3	109	8.41e-24	95.5
MS.gene053356.t1	AT1G22570	44.762	105	57	1	4	108	6	109	8.50e-24	95.5
MS.gene053356.t1	AT3G54450	46.512	86	45	1	27	112	11	95	1.66e-21	89.0
MS.gene053356.t1	AT1G72120	43.519	108	60	1	5	112	6	112	4.45e-21	87.8
MS.gene053356.t1	AT1G72140	35.780	109	70	0	4	112	9	117	1.69e-20	86.3
MS.gene053356.t1	AT1G22540	42.708	96	55	0	17	112	18	113	4.33e-20	85.1
MS.gene053356.t1	AT1G72125	44.762	105	57	1	8	112	9	112	1.76e-19	83.2
MS.gene053356.t1	AT1G32450	35.577	104	67	0	9	112	17	120	6.57e-19	81.6
MS.gene053356.t1	AT1G12110	42.391	92	53	0	19	110	17	108	7.33e-19	81.6
MS.gene053356.t1	AT1G72130	40.952	105	55	2	8	112	11	108	1.56e-18	80.5
MS.gene053356.t1	AT5G13400	41.121	107	61	2	8	112	41	147	1.68e-17	77.8
MS.gene053356.t1	AT4G21680	36.170	94	60	0	13	106	12	105	4.61e-17	76.3
MS.gene053356.t1	AT1G22570	53.846	65	30	0	44	108	8	72	1.11e-16	75.1
MS.gene053356.t1	AT1G69870	39.080	87	53	0	26	112	48	134	5.66e-16	73.2
MS.gene053356.t1	AT1G59740	33.981	103	68	0	11	113	23	125	6.05e-15	70.5
MS.gene053356.t1	AT1G68570	37.647	85	52	1	27	111	22	105	1.35e-13	66.6
MS.gene053356.t1	AT5G19640	36.585	82	52	0	31	112	61	142	2.56e-13	65.9
MS.gene053356.t1	AT5G28470	33.735	83	55	0	24	106	12	94	7.06e-13	64.3
MS.gene053356.t1	AT5G28470	33.735	83	55	0	24	106	12	94	7.41e-13	64.3
MS.gene053356.t1	AT1G68570	39.706	68	41	0	44	111	8	75	1.88e-12	63.2
MS.gene053356.t1	AT3G01350	36.782	87	54	1	26	111	3	89	6.56e-12	61.6
MS.gene053356.t1	AT5G62730	31.915	94	64	0	15	108	42	135	7.48e-12	61.6
MS.gene053356.t1	AT5G14940	34.118	85	56	0	27	111	5	89	1.64e-11	60.5
MS.gene053356.t1	AT1G69860	31.395	86	59	0	27	112	16	101	2.33e-11	60.1
MS.gene053356.t1	AT2G26690	35.870	92	59	0	12	103	7	98	3.01e-11	59.7
MS.gene053356.t1	AT3G25260	34.091	88	58	0	19	106	11	98	3.49e-11	59.7
MS.gene053356.t1	AT1G69850	34.375	96	63	0	15	110	11	106	5.28e-11	58.9

Find 26 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE

CRISPR-Local

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
TTTGAAAGAATTGCTTATTT+TGG	0.103448	1.4:+26622752	MS.gene053356:CDS
GATGGAACTATTGATCTTAA+AGG	0.228746	1.4:+26622002	MS.gene053356:CDS
AGCAATGTAAGCACCTAATA+TGG	0.250872	1.4:-26622879	None:intergenic
CTTCCAACAATGTCAACAAT+TGG	0.331479	1.4:+26622834	MS.gene053356:CDS
ATGCTCATCTTGGACGCTAT+TGG	0.389843	1.4:+26622903	MS.gene053356:CDS
AGCTTTCCAACCACCTGTCT+TGG	0.404551	1.4:-26622042	None:intergenic
TACATTGCTGATGCTCATCT+TGG	0.413401	1.4:+26622893	MS.gene053356:CDS
TTCTGCCTTTGTTTATCTAT+CGG	0.418528	1.4:+26622937	MS.gene053356:CDS
TAAGAGGACCTTTGTAATCC+AGG	0.419570	1.4:+26623046	MS.gene053356:intron
AACCCAATTGTTGACATTGT+TGG	0.426281	1.4:-26622837	None:intergenic
AAAGCTTGCTCATTTCTTGT+TGG	0.433680	1.4:+26622059	MS.gene053356:CDS
GCAATGGAAGAAGGCATGAT+TGG	0.445717	1.4:+26621963	MS.gene053356:CDS
TTCCAACAATGTCAACAATT+GGG	0.470599	1.4:+26622835	MS.gene053356:CDS
GCAATGTAAGCACCTAATAT+GGG	0.476307	1.4:-26622878	None:intergenic
GGAAATGAGTACACAAAAGA+TGG	0.476556	1.4:+26621984	MS.gene053356:CDS
AATATTATGGCAATGGAAGA+AGG	0.492661	1.4:+26621954	None:intergenic
AACAATGTCAACAATTGGGT+TGG	0.530864	1.4:+26622839	MS.gene053356:CDS
AAGAGGACCTTTGTAATCCA+GGG	0.547239	1.4:+26623047	MS.gene053356:intron
TCATGTCTACTGCAGTGTAT+GGG	0.587588	1.4:+26622726	MS.gene053356:intron
TCAGATCCAAGACAGGTGGT+TGG	0.608354	1.4:+26622036	MS.gene053356:CDS
TCTGTTCTCAGATCCAAGAC+AGG	0.609180	1.4:+26622029	MS.gene053356:CDS
ATTCTTGCCCTGGATTACAA+AGG	0.616312	1.4:-26623054	None:intergenic
TGGAAGAGATGACAGTGCCT+TGG	0.622263	1.4:-26622817	None:intergenic
ACATACCGATAGATAAACAA+AGG	0.660655	1.4:-26622942	None:intergenic
GTTCTCAGATCCAAGACAGG+TGG	0.678500	1.4:+26622032	MS.gene053356:CDS
TTGACAAAGAAGCTTCACCA+AGG	0.708677	1.4:+26622800	MS.gene053356:CDS

CRISPR-GE

badsite warning	sgRNA_sequence	Strand	Position	Region	GC_content
!!	AAATTAACAATTCAATTAAA+TGG	-	chr1.4:26622693-26622712	None:intergenic	10.0%
!!	AATAATTGAACAATATATAT+AGG	-	chr1.4:26622176-26622195	None:intergenic	10.0%
!!	AATTAACAATTCAATTAAAT+GGG	-	chr1.4:26622692-26622711	None:intergenic	10.0%
!!	AAAATATGTTAATTGTACTA+AGG	-	chr1.4:26622199-26622218	None:intergenic	15.0%
!!	ATAAAAAATAAGAGACATTA+TGG	+	chr1.4:26622343-26622362	MS.gene053356:intron	15.0%
!!	TAAAGATTATAAATAATCCA+CGG	-	chr1.4:26622321-26622340	None:intergenic	15.0%
!!!	AAGATAAAATTTTAGATTAG+AGG	-	chr1.4:26622541-26622560	None:intergenic	15.0%
!!	AAACTTATCAACAACATATA+AGG	-	chr1.4:26622647-26622666	None:intergenic	20.0%
!!	ATTCAATTAAATGGGTAATA+TGG	-	chr1.4:26622684-26622703	None:intergenic	20.0%
!!	TTCACTAGAAAAATGTTATT+CGG	+	chr1.4:26622118-26622137	MS.gene053356:intron	20.0%
!!	TTTACCAACAAAGAAAATAA+TGG	+	chr1.4:26622559-26622578	MS.gene053356:intron	20.0%
!!!	TTTGAAAGAATTGCTTATTT+TGG	+	chr1.4:26622752-26622771	MS.gene053356:CDS	20.0%
!	AAAAAAATGCCGAAATTGTT+TGG	+	chr1.4:26622277-26622296	MS.gene053356:intron	25.0%
!	ATTTGTAAGCAAAAACCTTA+AGG	+	chr1.4:26622395-26622414	MS.gene053356:intron	25.0%
!	TTACACTCTATAAGAGTAAA+TGG	-	chr1.4:26622459-26622478	None:intergenic	25.0%
!!	ATGACCATTATTTTCTTTGT+TGG	-	chr1.4:26622566-26622585	None:intergenic	25.0%
!!!	AACAATTTCGGCATTTTTTT+CGG	-	chr1.4:26622277-26622296	None:intergenic	25.0%
	AAAGGTCCTCTTATAAAGAT+CGG	-	chr1.4:26623039-26623058	None:intergenic	30.0%
	ACATACCGATAGATAAACAA+AGG	-	chr1.4:26622945-26622964	None:intergenic	30.0%
	ACCTTAAGGAGTTATCTTAT+TGG	+	chr1.4:26622409-26622428	MS.gene053356:intron	30.0%
	AGGTAGATTAAATTGTACTG+TGG	-	chr1.4:26622156-26622175	None:intergenic	30.0%
	CCTTAAGGAGTTATCTTATT+GGG	+	chr1.4:26622410-26622429	MS.gene053356:intron	30.0%
	GATGGAACTATTGATCTTAA+AGG	+	chr1.4:26622002-26622021	MS.gene053356:CDS	30.0%
	TTCCAACAATGTCAACAATT+GGG	+	chr1.4:26622835-26622854	MS.gene053356:CDS	30.0%
	TTGATCATCTTAAGCAAAGT+TGG	-	chr1.4:26622602-26622621	None:intergenic	30.0%
!	GTTTTTATGACTCCCATATT+AGG	+	chr1.4:26622866-26622885	MS.gene053356:CDS	30.0%
!	TTCTGCCTTTGTTTATCTAT+CGG	+	chr1.4:26622937-26622956	MS.gene053356:CDS	30.0%
	AAAAATTTGCATTCTTGCCC+TGG	-	chr1.4:26623067-26623086	None:intergenic	35.0%
	AAATGCCGAAATTGTTTGGT+CGG	+	chr1.4:26622281-26622300	MS.gene053356:intron	35.0%
	AACAATGTCAACAATTGGGT+TGG	+	chr1.4:26622839-26622858	MS.gene053356:CDS	35.0%
	AACCCAATTGTTGACATTGT+TGG	-	chr1.4:26622840-26622859	None:intergenic	35.0%
	AGCAATGTAAGCACCTAATA+TGG	-	chr1.4:26622882-26622901	None:intergenic	35.0%
	ATGATCAAAGCATGCTCATT+AGG	+	chr1.4:26622614-26622633	MS.gene053356:intron	35.0%
	CCCAATAAGATAACTCCTTA+AGG	-	chr1.4:26622413-26622432	None:intergenic	35.0%
	CTTCCAACAATGTCAACAAT+TGG	+	chr1.4:26622834-26622853	MS.gene053356:CDS	35.0%
	GCAATGTAAGCACCTAATAT+GGG	-	chr1.4:26622881-26622900	None:intergenic	35.0%
	GGAAATGAGTACACAAAAGA+TGG	+	chr1.4:26621984-26622003	MS.gene053356:CDS	35.0%
	TATGACCGACCAAACAATTT+CGG	-	chr1.4:26622289-26622308	None:intergenic	35.0%
	TTTCTCTCTCACACACTTTA+TGG	+	chr1.4:26622087-26622106	MS.gene053356:intron	35.0%
!	AAAGCTTGCTCATTTCTTGT+TGG	+	chr1.4:26622059-26622078	MS.gene053356:CDS	35.0%
!!!	GCATTTTTTTCGGTTGAGTT+AGG	-	chr1.4:26622267-26622286	None:intergenic	35.0%
	AACCCTCCGATCTTTATAAG+AGG	+	chr1.4:26623030-26623049	MS.gene053356:intron	40.0%
	AAGAGGACCTTTGTAATCCA+GGG	+	chr1.4:26623047-26623066	MS.gene053356:intron	40.0%
	ATTCTTGCCCTGGATTACAA+AGG	-	chr1.4:26623057-26623076	None:intergenic	40.0%
	GTCCTCTTATAAAGATCGGA+GGG	-	chr1.4:26623035-26623054	None:intergenic	40.0%
	TAAGAGGACCTTTGTAATCC+AGG	+	chr1.4:26623046-26623065	MS.gene053356:intron	40.0%
	TACATTGCTGATGCTCATCT+TGG	+	chr1.4:26622893-26622912	MS.gene053356:CDS	40.0%
	TCATGTCTACTGCAGTGTAT+GGG	+	chr1.4:26622726-26622745	MS.gene053356:intron	40.0%
	TTCATGTCTACTGCAGTGTA+TGG	+	chr1.4:26622725-26622744	MS.gene053356:intron	40.0%
	TTGACAAAGAAGCTTCACCA+AGG	+	chr1.4:26622800-26622819	MS.gene053356:CDS	40.0%
!!	TTTTTCGGTTGAGTTAGGAC+AGG	-	chr1.4:26622262-26622281	None:intergenic	40.0%
	ATGCTCATCTTGGACGCTAT+TGG	+	chr1.4:26622903-26622922	MS.gene053356:CDS	45.0%
	GGTCCTCTTATAAAGATCGG+AGG	-	chr1.4:26623036-26623055	None:intergenic	45.0%
	TCTGTTCTCAGATCCAAGAC+AGG	+	chr1.4:26622029-26622048	MS.gene053356:CDS	45.0%
!	GCAATGGAAGAAGGCATGAT+TGG	+	chr1.4:26621963-26621982	MS.gene053356:CDS	45.0%
!!	TAATATCTAATAAAATATAA+TGG	+	chr1.4:26622494-26622513	MS.gene053356:intron	5.0%
	AGCTTTCCAACCACCTGTCT+TGG	-	chr1.4:26622045-26622064	None:intergenic	50.0%
	CGGTCATATCGATATGACCG+TGG	+	chr1.4:26622301-26622320	MS.gene053356:intron	50.0%
	GTTCTCAGATCCAAGACAGG+TGG	+	chr1.4:26622032-26622051	MS.gene053356:CDS	50.0%
	TCAGATCCAAGACAGGTGGT+TGG	+	chr1.4:26622036-26622055	MS.gene053356:CDS	50.0%
	TGGAAGAGATGACAGTGCCT+TGG	-	chr1.4:26622820-26622839	None:intergenic	50.0%

Chromosome	Type	Strat	End	Strand	Name
chr1.4	gene	26621960	26623097	26621960	ID=MS.gene053356
chr1.4	mRNA	26621960	26623097	26621960	ID=MS.gene053356.t1;Parent=MS.gene053356
chr1.4	exon	26621960	26622080	26621960	ID=MS.gene053356.t1.exon1;Parent=MS.gene053356.t1
chr1.4	CDS	26621960	26622080	26621960	ID=cds.MS.gene053356.t1;Parent=MS.gene053356.t1
chr1.4	exon	26622741	26622958	26622741	ID=MS.gene053356.t1.exon2;Parent=MS.gene053356.t1
chr1.4	CDS	26622741	26622958	26622741	ID=cds.MS.gene053356.t1;Parent=MS.gene053356.t1
chr1.4	exon	26623050	26623097	26623050	ID=MS.gene053356.t1.exon3;Parent=MS.gene053356.t1
chr1.4	CDS	26623050	26623097	26623050	ID=cds.MS.gene053356.t1;Parent=MS.gene053356.t1

Gene Sequence

>MS.gene053356

ATGGCAATGGAAGAAGGCATGATTGGAAATGAGTACACAAAAGATGGAACTATTGATCTTAAAGGAAAATCTGTTCTCAGATCCAAGACAGGTGGTTGGAAAGCTTGCTCATTTCTTGTTGGTAACATTTCTCTCTCACACACTTTATGGTCATGATTTTCACTAGAAAAATGTTATTCGGACACTCATGCATCCACAGTACAATTTAATCTACCTATATATATTGTTCAATTATTCCTTAGTACAATTAACATATTTTTCTCTCAAAAAAAAAAAATTAACATATTTTATTCACATGTCCTGTCCTAACTCAACCGAAAAAAATGCCGAAATTGTTTGGTCGGTCATATCGATATGACCGTGGATTATTTATAATCTTTACAATAAAAAATAAGAGACATTATGGTCATGATATAATATATATCAATTTTTTTAATTTGTAAGCAAAAACCTTAAGGAGTTATCTTATTGGGTAGAATAAAAGAGAAAAAGTTTACCATTTACTCTTATAGAGTGTAATTTAGAATATAAAATTAATATCTAATAAAATATAATGGTCACTTAGAGCAGTTGTGTCTCCTCTAATCTAAAATTTTATCTTTACCAACAAAGAAAATAATGGTCATTCAGTATAGAGCTCCAACTTTGCTTAAGATGATCAAAGCATGCTCATTAGGAAATAAACCTTATATGTTGTTGATAAGTTTCTCATGCATTCAAACCATATTACCCATTTAATTGAATTGTTAATTTTGCTTGAATGAATTCATGTCTACTGCAGTGTATGGGATATTTGAAAGAATTGCTTATTTTGGAATATCATCAAATTTGTTTGTGTATTTGACAAAGAAGCTTCACCAAGGCACTGTCATCTCTTCCAACAATGTCAACAATTGGGTTGGCACTGTTTTTATGACTCCCATATTAGGTGCTTACATTGCTGATGCTCATCTTGGACGCTATTGGACTTTTGTCATTTCTGCCTTTGTTTATCTATCGGTATGTAATGTATGTCTCTTGATTACATTTAAATTTTAAATGATGTAAATTTTTATTTTTTTATTTGTGTTAACCCTCCGATCTTTATAAGAGGACCTTTGTAATCCAGGGCAAGAATGCAAATTTTTTTTTTCAATGA

Protein sequence

>MS.gene053356.t1

MAMEEGMIGNEYTKDGTIDLKGKSVLRSKTGGWKACSFLVVYGIFERIAYFGISSNLFVYLTKKLHQGTVISSNNVNNWVGTVFMTPILGAYIADAHLGRYWTFVISAFVYLSRTFVIQGKNANFFFQ