Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92100.t1 | XP_013444778.1 | 100 | 149 | 0 | 0 | 1 | 149 | 1 | 149 | 1.00E-53 | 219.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92100.t1 | O03982 | 65.0 | 177 | 34 | 2 | 1 | 149 | 1 | 177 | 6.2e-36 | 151.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92100.t1 | A0A072TPN8 | 100.0 | 149 | 0 | 0 | 1 | 149 | 1 | 149 | 7.3e-54 | 219.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049396 | MS.gene92100 | 0.819132 | 1.36E-52 | -1.69E-46 |
| MS.gene053449 | MS.gene92100 | 0.81364 | 2.31E-51 | -1.69E-46 |
| MS.gene055911 | MS.gene92100 | 0.800196 | 1.61E-48 | -1.69E-46 |
| MS.gene056422 | MS.gene92100 | 0.830612 | 2.66E-55 | -1.69E-46 |
| MS.gene056833 | MS.gene92100 | 0.971308 | 5.84E-133 | -1.69E-46 |
| MS.gene059807 | MS.gene92100 | 0.839525 | 1.50E-57 | -1.69E-46 |
| MS.gene060372 | MS.gene92100 | 0.801002 | 1.11E-48 | -1.69E-46 |
| MS.gene060837 | MS.gene92100 | 0.824975 | 6.03E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92100.t1 | MTR_8g028615 | 99.329 | 149 | 1 | 0 | 1 | 149 | 1 | 149 | 9.57e-106 | 298 |
| MS.gene92100.t1 | MTR_8g098915 | 58.389 | 149 | 40 | 1 | 1 | 149 | 1 | 127 | 6.08e-54 | 166 |
| MS.gene92100.t1 | MTR_7g079110 | 55.233 | 172 | 54 | 1 | 1 | 149 | 1 | 172 | 3.81e-50 | 158 |
| MS.gene92100.t1 | MTR_8g098915 | 56.154 | 130 | 35 | 1 | 20 | 149 | 1 | 108 | 9.54e-43 | 137 |
| MS.gene92100.t1 | MTR_6g049280 | 43.624 | 149 | 59 | 2 | 1 | 149 | 1 | 124 | 1.91e-28 | 101 |
| MS.gene92100.t1 | MTR_6g049280 | 42.953 | 149 | 60 | 2 | 1 | 149 | 31 | 154 | 7.99e-28 | 101 |
| MS.gene92100.t1 | MTR_6g051690 | 40.940 | 149 | 66 | 2 | 1 | 149 | 1 | 127 | 1.13e-27 | 100 |
| MS.gene92100.t1 | MTR_6g051680 | 64.286 | 70 | 25 | 0 | 1 | 70 | 1 | 70 | 4.32e-27 | 97.8 |
| MS.gene92100.t1 | MTR_6g049320 | 42.953 | 149 | 60 | 2 | 1 | 149 | 1 | 124 | 5.35e-27 | 98.2 |
| MS.gene92100.t1 | MTR_6g049320 | 42.282 | 149 | 61 | 2 | 1 | 149 | 31 | 154 | 2.29e-26 | 97.4 |
| MS.gene92100.t1 | MTR_1g099640 | 43.421 | 152 | 61 | 4 | 1 | 149 | 1 | 130 | 3.36e-26 | 96.3 |
| MS.gene92100.t1 | MTR_1g099800 | 43.421 | 152 | 65 | 2 | 1 | 148 | 1 | 135 | 7.99e-26 | 95.5 |
| MS.gene92100.t1 | MTR_6g049260 | 57.143 | 77 | 32 | 1 | 1 | 77 | 1 | 76 | 4.69e-24 | 90.1 |
| MS.gene92100.t1 | MTR_1g099810 | 41.935 | 155 | 66 | 4 | 1 | 148 | 1 | 138 | 6.71e-24 | 90.5 |
| MS.gene92100.t1 | MTR_7g451210 | 54.667 | 75 | 34 | 0 | 1 | 75 | 1 | 75 | 7.24e-23 | 87.4 |
| MS.gene92100.t1 | MTR_1g099815 | 41.026 | 156 | 59 | 4 | 1 | 148 | 1 | 131 | 1.66e-22 | 87.0 |
| MS.gene92100.t1 | MTR_3g434890 | 52.439 | 82 | 38 | 1 | 1 | 82 | 1 | 81 | 2.70e-22 | 85.9 |
| MS.gene92100.t1 | MTR_3g434960 | 52.439 | 82 | 38 | 1 | 1 | 82 | 1 | 81 | 2.73e-22 | 85.9 |
| MS.gene92100.t1 | MTR_1173s0010 | 50.667 | 75 | 37 | 0 | 1 | 75 | 1 | 75 | 4.76e-21 | 82.4 |
| MS.gene92100.t1 | MTR_1g102240 | 35.897 | 156 | 67 | 3 | 1 | 148 | 1 | 131 | 6.97e-21 | 82.8 |
| MS.gene92100.t1 | MTR_7g451200 | 50.633 | 79 | 38 | 1 | 1 | 79 | 1 | 78 | 1.43e-20 | 81.3 |
| MS.gene92100.t1 | MTR_3g435000 | 52.703 | 74 | 34 | 1 | 6 | 79 | 10 | 82 | 1.56e-20 | 81.3 |
| MS.gene92100.t1 | MTR_0795s0020 | 41.509 | 159 | 51 | 4 | 1 | 149 | 1 | 127 | 2.05e-20 | 81.3 |
| MS.gene92100.t1 | MTR_1g099810 | 39.706 | 136 | 58 | 4 | 20 | 148 | 1 | 119 | 4.33e-16 | 70.1 |
| MS.gene92100.t1 | MTR_3g434920 | 52.727 | 55 | 25 | 1 | 28 | 82 | 2 | 55 | 4.87e-12 | 58.5 |
| MS.gene92100.t1 | MTR_5g020960 | 36.552 | 145 | 75 | 5 | 1 | 137 | 2 | 137 | 6.76e-11 | 57.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92100.t1 | AT1G01490 | 56.497 | 177 | 49 | 3 | 1 | 149 | 1 | 177 | 6.35e-46 | 148 |
| MS.gene92100.t1 | AT1G01490 | 56.497 | 177 | 49 | 3 | 1 | 149 | 1 | 177 | 6.35e-46 | 148 |
| MS.gene92100.t1 | AT1G01490 | 56.000 | 175 | 49 | 3 | 3 | 149 | 30 | 204 | 8.19e-45 | 145 |
| MS.gene92100.t1 | AT1G01490 | 50.694 | 144 | 43 | 3 | 34 | 149 | 1 | 144 | 4.37e-26 | 96.7 |
| MS.gene92100.t1 | AT5G52760 | 49.398 | 83 | 41 | 1 | 2 | 84 | 4 | 85 | 2.21e-17 | 73.6 |
| MS.gene92100.t1 | AT5G52740 | 49.296 | 71 | 34 | 1 | 1 | 71 | 1 | 69 | 9.45e-16 | 69.3 |
| MS.gene92100.t1 | AT5G52750 | 48.649 | 74 | 38 | 0 | 3 | 76 | 5 | 78 | 4.92e-11 | 57.4 |
Find 32 sgRNAs with CRISPR-Local
Find 158 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAACAGTCTCAACACTTTC+AGG | 0.167612 | 8.3:+64781429 | MS.gene92100:CDS |
| AATTTGCTCACCACATTTAC+TGG | 0.185815 | 8.3:-64783467 | None:intergenic |
| TTCCTAATCCATTCTTGAAT+AGG | 0.370743 | 8.3:-64783665 | None:intergenic |
| TGGTAATGTGTTGTCATATA+GGG | 0.371705 | 8.3:-64783704 | None:intergenic |
| AAAGAAAGAAGAAGGAAAGA+AGG | 0.374548 | 8.3:+64783574 | MS.gene92100:CDS |
| CTCTTTCATGTCCATTGAGA+TGG | 0.375765 | 8.3:-64783414 | None:intergenic |
| TGAGCAAATTAAGAAAATTC+TGG | 0.381644 | 8.3:+64783480 | MS.gene92100:CDS |
| ATGGTAATGTGTTGTCATAT+AGG | 0.413083 | 8.3:-64783705 | None:intergenic |
| GAGAAGAAACTGACAGTGAT+AGG | 0.416746 | 8.3:+64783434 | MS.gene92100:CDS |
| ATCCTATTCAAGAATGGATT+AGG | 0.419464 | 8.3:+64783663 | MS.gene92100:CDS |
| TCTTGAATAGGATCTGGTGG+TGG | 0.433366 | 8.3:-64783653 | None:intergenic |
| GATGGAGAAAAGAAAGAAGA+AGG | 0.445221 | 8.3:+64783566 | MS.gene92100:CDS |
| AAAGAAGAAGCCAAGAAAGA+TGG | 0.450668 | 8.3:+64783548 | MS.gene92100:CDS |
| CTTGAATAGGATCTGGTGGT+GGG | 0.454168 | 8.3:-64783652 | None:intergenic |
| GAAGAGGGAAAGAAAGAAGA+AGG | 0.456920 | 8.3:+64783596 | MS.gene92100:CDS |
| ATCCATTCTTGAATAGGATC+TGG | 0.462680 | 8.3:-64783659 | None:intergenic |
| GAAGAAGGAAAGAAGGAAGA+GGG | 0.465238 | 8.3:+64783581 | MS.gene92100:CDS |
| TAACAAATGACACATGCATT+GGG | 0.466318 | 8.3:-64783749 | None:intergenic |
| AGAAGAAGGAAAGAAGGAAG+AGG | 0.473715 | 8.3:+64783580 | MS.gene92100:CDS |
| TGAATAGGATCTGGTGGTGG+GGG | 0.487070 | 8.3:-64783650 | None:intergenic |
| AGAAGAAGAGAAGAAGAAAG+AGG | 0.494396 | 8.3:+64783625 | MS.gene92100:CDS |
| TTAACAAATGACACATGCAT+TGG | 0.497832 | 8.3:-64783750 | None:intergenic |
| CACCAGATCCTATTCAAGAA+TGG | 0.515760 | 8.3:+64783657 | MS.gene92100:CDS |
| TTGAATAGGATCTGGTGGTG+GGG | 0.549295 | 8.3:-64783651 | None:intergenic |
| AGGGATTGATGCCATCTCAA+TGG | 0.552997 | 8.3:+64783403 | MS.gene92100:intron |
| TCTCTTCCATGCTTTGAACA+TGG | 0.559376 | 8.3:-64783724 | None:intergenic |
| TGATGACAAGGACAAGAAGA+AGG | 0.590063 | 8.3:+64781401 | MS.gene92100:CDS |
| AACAGTAGATCCAGTAAATG+TGG | 0.591652 | 8.3:+64783457 | MS.gene92100:CDS |
| GTTAGATTTGCATGATGACA+AGG | 0.607821 | 8.3:+64781389 | MS.gene92100:CDS |
| ACATTACCATGTTCAAAGCA+TGG | 0.617021 | 8.3:+64783718 | MS.gene92100:CDS |
| CATTCTTGAATAGGATCTGG+TGG | 0.618384 | 8.3:-64783656 | None:intergenic |
| CATACAGAAATAGTAGCAGT+AGG | 0.633124 | 8.3:+64783503 | MS.gene92100:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTTTATTTTTATTTT+GGG | + | chr8.3:64781274-64781293 | MS.gene92100:intron | 0.0% |
| !!! | TATATTTTTTATTTTTATTT+TGG | + | chr8.3:64781273-64781292 | MS.gene92100:intron | 0.0% |
| !!! | ATTATTTTATTGTTCATTTT+GGG | + | chr8.3:64781461-64781480 | MS.gene92100:intron | 10.0% |
| !!! | ATTTATTCTTTTTATAGAAA+TGG | + | chr8.3:64781018-64781037 | MS.gene92100:intron | 10.0% |
| !!! | CAATAGTTTTTTTTTTAATA+AGG | - | chr8.3:64781700-64781719 | None:intergenic | 10.0% |
| !!! | TTTTATACTAATATATTTTG+TGG | + | chr8.3:64781640-64781659 | MS.gene92100:intron | 10.0% |
| !!! | TTTTGATGAATTTTAAAATA+GGG | + | chr8.3:64783301-64783320 | MS.gene92100:intron | 10.0% |
| !!! | TTTTTGATGAATTTTAAAAT+AGG | + | chr8.3:64783300-64783319 | MS.gene92100:intron | 10.0% |
| !! | AAATATTGGGTATAAAAATA+TGG | - | chr8.3:64782228-64782247 | None:intergenic | 15.0% |
| !! | AATATTGGGTATAAAAATAT+GGG | - | chr8.3:64782227-64782246 | None:intergenic | 15.0% |
| !! | ATGAAAAGAAAAATAAATAG+AGG | - | chr8.3:64781111-64781130 | None:intergenic | 15.0% |
| !! | CAACAAATAAAAAAATTTGA+AGG | + | chr8.3:64783102-64783121 | MS.gene92100:intron | 15.0% |
| !! | TGAACAATAAAATAATGATT+TGG | - | chr8.3:64781457-64781476 | None:intergenic | 15.0% |
| !! | TTTCTCAAAAACAAAATATT+GGG | - | chr8.3:64782241-64782260 | None:intergenic | 15.0% |
| !!! | AAATTTTCTTCAAATGAATT+AGG | + | chr8.3:64781323-64781342 | MS.gene92100:intron | 15.0% |
| !!! | AATTTTCTTCAAATGAATTA+GGG | + | chr8.3:64781324-64781343 | MS.gene92100:intron | 15.0% |
| !!! | CATTATTTTATTGTTCATTT+TGG | + | chr8.3:64781460-64781479 | MS.gene92100:intron | 15.0% |
| !!! | TTTTAGGCATAAATATTTTT+AGG | + | chr8.3:64781994-64782013 | MS.gene92100:intron | 15.0% |
| !!! | TTTTCTCAAAAACAAAATAT+TGG | - | chr8.3:64782242-64782261 | None:intergenic | 15.0% |
| !!! | TTTTTATTTTTATTTTGGGT+TGG | + | chr8.3:64781278-64781297 | MS.gene92100:intron | 15.0% |
| !!! | TTTTTTTTAATAAGGAATGA+AGG | - | chr8.3:64781692-64781711 | None:intergenic | 15.0% |
| !! | AAATTTGAGTAATGTGAAAA+AGG | - | chr8.3:64782988-64783007 | None:intergenic | 20.0% |
| !! | AGACAAAGACTTATATTATT+TGG | - | chr8.3:64782452-64782471 | None:intergenic | 20.0% |
| !! | ATAATATAAGTCTTTGTCTT+TGG | + | chr8.3:64782453-64782472 | MS.gene92100:intron | 20.0% |
| !! | ATATGATATACTTAAGATTG+TGG | - | chr8.3:64781572-64781591 | None:intergenic | 20.0% |
| !! | ATTTAACAAAGCAAAATGTT+TGG | + | chr8.3:64782701-64782720 | MS.gene92100:intron | 20.0% |
| !! | TATCAAAACAAGAATTATCT+TGG | - | chr8.3:64782944-64782963 | None:intergenic | 20.0% |
| !! | TTTGTATTTCATATGACATA+GGG | - | chr8.3:64782374-64782393 | None:intergenic | 20.0% |
| !!! | AATTTTGCACAACATTTTAA+AGG | + | chr8.3:64783068-64783087 | MS.gene92100:intron | 20.0% |
| !!! | AGACTATTCAAGTTTTTAAT+AGG | + | chr8.3:64783151-64783170 | MS.gene92100:intron | 20.0% |
| !!! | AGATAATTCTTGTTTTGATA+AGG | + | chr8.3:64782944-64782963 | MS.gene92100:intron | 20.0% |
| !!! | GTGTTTTTGTAACAATAAAA+AGG | - | chr8.3:64782590-64782609 | None:intergenic | 20.0% |
| !!! | TAGATTTTTAAATCAATGGA+AGG | - | chr8.3:64782053-64782072 | None:intergenic | 20.0% |
| !!! | TGTTGTAATTTTGTTAGAAT+TGG | - | chr8.3:64781868-64781887 | None:intergenic | 20.0% |
| !!! | TTCCATTGATTTAAAAATCT+AGG | + | chr8.3:64782052-64782071 | MS.gene92100:intron | 20.0% |
| !!! | TTCCTAGATTTTTAAATCAA+TGG | - | chr8.3:64782057-64782076 | None:intergenic | 20.0% |
| !!! | TTGATATAGTATAGAGATTT+TGG | + | chr8.3:64781198-64781217 | MS.gene92100:intron | 20.0% |
| ! | AAGTTCTTGGAGAATAAAAA+AGG | - | chr8.3:64781081-64781100 | None:intergenic | 25.0% |
| ! | CCATTAACCCTTTATTAAAT+AGG | - | chr8.3:64782620-64782639 | None:intergenic | 25.0% |
| ! | CCTATTTAATAAAGGGTTAA+TGG | + | chr8.3:64782617-64782636 | MS.gene92100:intron | 25.0% |
| ! | CGTCAAAATGTATGTATATA+CGG | - | chr8.3:64782290-64782309 | None:intergenic | 25.0% |
| ! | GTTTGTATTTCATATGACAT+AGG | - | chr8.3:64782375-64782394 | None:intergenic | 25.0% |
| ! | TCTCTCACCTATTTAATAAA+GGG | + | chr8.3:64782610-64782629 | MS.gene92100:intron | 25.0% |
| ! | TGAATGATCTATACATGTTT+CGG | - | chr8.3:64783277-64783296 | None:intergenic | 25.0% |
| ! | TGAGCAAATTAAGAAAATTC+TGG | + | chr8.3:64783480-64783499 | MS.gene92100:CDS | 25.0% |
| ! | TGTTAAATAATGCCTACATA+GGG | - | chr8.3:64782689-64782708 | None:intergenic | 25.0% |
| ! | TTGTTAAATAATGCCTACAT+AGG | - | chr8.3:64782690-64782709 | None:intergenic | 25.0% |
| ! | TTTAATAAAGGGTTAATGGA+AGG | + | chr8.3:64782621-64782640 | MS.gene92100:intron | 25.0% |
| !! | ATGACTTGCATAATAATTTG+TGG | + | chr8.3:64782868-64782887 | MS.gene92100:intron | 25.0% |
| !!! | AGGCATGAAACTTTATTTTT+AGG | + | chr8.3:64781978-64781997 | MS.gene92100:intron | 25.0% |
| !!! | GATGAATTTTAAAATAGGGA+GGG | + | chr8.3:64783305-64783324 | MS.gene92100:intron | 25.0% |
| !!! | GGAAAATGTTTTAAAAGTCT+AGG | + | chr8.3:64782105-64782124 | MS.gene92100:intron | 25.0% |
| !!! | GTAATGTTTTAAAAGTGTGT+AGG | + | chr8.3:64782084-64782103 | MS.gene92100:intron | 25.0% |
| !!! | TATAGTATAGAGATTTTGGT+TGG | + | chr8.3:64781202-64781221 | MS.gene92100:intron | 25.0% |
| !!! | TGATGAATTTTAAAATAGGG+AGG | + | chr8.3:64783304-64783323 | MS.gene92100:intron | 25.0% |
| !!! | TGTTTTTGAGAAAAGTTTTG+CGG | + | chr8.3:64782248-64782267 | MS.gene92100:intron | 25.0% |
| !!! | TTTGGTTGGTAGAAAAATAT+TGG | + | chr8.3:64781216-64781235 | MS.gene92100:intron | 25.0% |
| AAAAATATGGGTCATGCTAA+GGG | - | chr8.3:64782215-64782234 | None:intergenic | 30.0% | |
| AAACAAGAATTATCTTGGCT+AGG | - | chr8.3:64782939-64782958 | None:intergenic | 30.0% | |
| AAAGAAAGAAGAAGGAAAGA+AGG | + | chr8.3:64783574-64783593 | MS.gene92100:CDS | 30.0% | |
| AAGGATTTCTCATGTGATTA+GGG | + | chr8.3:64783384-64783403 | MS.gene92100:intron | 30.0% | |
| AAGTATAACCAAAGAATCAG+AGG | - | chr8.3:64781760-64781779 | None:intergenic | 30.0% | |
| AATCCAGTTTCAGTCAAAAT+AGG | + | chr8.3:64783331-64783350 | MS.gene92100:intron | 30.0% | |
| ACTTTATCTTATCTCTCTCA+AGG | - | chr8.3:64782741-64782760 | None:intergenic | 30.0% | |
| AGTTAAACACTGTAGAAAAC+TGG | - | chr8.3:64782542-64782561 | None:intergenic | 30.0% | |
| ATAGACACCATATAAACGTA+CGG | + | chr8.3:64782314-64782333 | MS.gene92100:intron | 30.0% | |
| ATCCAGTTTCAGTCAAAATA+GGG | + | chr8.3:64783332-64783351 | MS.gene92100:intron | 30.0% | |
| CAAATGTTAGCAATGTTAGT+AGG | + | chr8.3:64783174-64783193 | MS.gene92100:intron | 30.0% | |
| CATGAGAAATCCTTGATATT+AGG | - | chr8.3:64783378-64783397 | None:intergenic | 30.0% | |
| CTCTCTCACCTATTTAATAA+AGG | + | chr8.3:64782609-64782628 | MS.gene92100:intron | 30.0% | |
| CTGATTCTTTGGTTATACTT+CGG | + | chr8.3:64781760-64781779 | MS.gene92100:intron | 30.0% | |
| CTGCAATGAAAATCATAAAC+TGG | - | chr8.3:64781355-64781374 | None:intergenic | 30.0% | |
| TAAAAATATGGGTCATGCTA+AGG | - | chr8.3:64782216-64782235 | None:intergenic | 30.0% | |
| TAACAAATGACACATGCATT+GGG | - | chr8.3:64783752-64783771 | None:intergenic | 30.0% | |
| TAACTTCAATGATCGAACTT+TGG | + | chr8.3:64781910-64781929 | MS.gene92100:intron | 30.0% | |
| TACACATGAGAGAAAAAAAC+TGG | + | chr8.3:64782651-64782670 | MS.gene92100:intron | 30.0% | |
| TATAAGTCTTTGTCTTTGGA+TGG | + | chr8.3:64782457-64782476 | MS.gene92100:intron | 30.0% | |
| TCAATAGTCAAAGTGATAAG+AGG | + | chr8.3:64781827-64781846 | MS.gene92100:intron | 30.0% | |
| TCATTTCGAAATGATTCACT+AGG | + | chr8.3:64782491-64782510 | MS.gene92100:intron | 30.0% | |
| TCCATTTAAGCCTAATATCA+AGG | + | chr8.3:64783365-64783384 | MS.gene92100:intron | 30.0% | |
| TCCTTGATATTAGGCTTAAA+TGG | - | chr8.3:64783369-64783388 | None:intergenic | 30.0% | |
| TCTCCTTATGTAAAGATCTA+GGG | + | chr8.3:64781159-64781178 | MS.gene92100:intron | 30.0% | |
| TTAACAAATGACACATGCAT+TGG | - | chr8.3:64783753-64783772 | None:intergenic | 30.0% | |
| TTCCTAATCCATTCTTGAAT+AGG | - | chr8.3:64783668-64783687 | None:intergenic | 30.0% | |
| TTTGATAAGGTTGTTCTGAT+TGG | + | chr8.3:64782957-64782976 | MS.gene92100:intron | 30.0% | |
| ! | ATCCTATTCAAGAATGGATT+AGG | + | chr8.3:64783663-64783682 | MS.gene92100:CDS | 30.0% |
| ! | ATGGTAATGTGTTGTCATAT+AGG | - | chr8.3:64783708-64783727 | None:intergenic | 30.0% |
| ! | TGCATAATAATTTGTGGCTA+TGG | + | chr8.3:64782874-64782893 | MS.gene92100:intron | 30.0% |
| ! | TGGTAATGTGTTGTCATATA+GGG | - | chr8.3:64783707-64783726 | None:intergenic | 30.0% |
| ! | TTAGTAGGATGTTAGTTTCT+CGG | + | chr8.3:64783189-64783208 | MS.gene92100:intron | 30.0% |
| ! | TTTCTTTTCTCCATCTTTCT+TGG | - | chr8.3:64783561-64783580 | None:intergenic | 30.0% |
| !! | GATCGAAAGTGTATTTTGTT+TGG | + | chr8.3:64782397-64782416 | MS.gene92100:intron | 30.0% |
| !!! | AAGTGTATTTTGTTTGGTGT+TGG | + | chr8.3:64782403-64782422 | MS.gene92100:intron | 30.0% |
| !!! | ATTTTGTTTGGTGTTGGATA+TGG | + | chr8.3:64782409-64782428 | MS.gene92100:intron | 30.0% |
| AAAACAGTCTCAACACTTTC+AGG | + | chr8.3:64781429-64781448 | MS.gene92100:CDS | 35.0% | |
| AAAGAAGAAGCCAAGAAAGA+TGG | + | chr8.3:64783548-64783567 | MS.gene92100:CDS | 35.0% | |
| AACAGTAGATCCAGTAAATG+TGG | + | chr8.3:64783457-64783476 | MS.gene92100:CDS | 35.0% | |
| ACATTACCATGTTCAAAGCA+TGG | + | chr8.3:64783718-64783737 | MS.gene92100:CDS | 35.0% | |
| AGAAGAAGAGAAGAAGAAAG+AGG | + | chr8.3:64783625-64783644 | MS.gene92100:CDS | 35.0% | |
| ATCCATTCTTGAATAGGATC+TGG | - | chr8.3:64783662-64783681 | None:intergenic | 35.0% | |
| ATTCGAACCGTACGTTTATA+TGG | - | chr8.3:64782324-64782343 | None:intergenic | 35.0% | |
| CAAGGATTTCTCATGTGATT+AGG | + | chr8.3:64783383-64783402 | MS.gene92100:intron | 35.0% | |
| CATACAGAAATAGTAGCAGT+AGG | + | chr8.3:64783503-64783522 | MS.gene92100:CDS | 35.0% | |
| CTACCCTAGATCTTTACATA+AGG | - | chr8.3:64781165-64781184 | None:intergenic | 35.0% | |
| CTCTCCTTATGTAAAGATCT+AGG | + | chr8.3:64781158-64781177 | MS.gene92100:intron | 35.0% | |
| GATGGAGAAAAGAAAGAAGA+AGG | + | chr8.3:64783566-64783585 | MS.gene92100:CDS | 35.0% | |
| GTCTTTGGATGGTTTGAATT+TGG | + | chr8.3:64782468-64782487 | MS.gene92100:intron | 35.0% | |
| GTTAGATTTGCATGATGACA+AGG | + | chr8.3:64781389-64781408 | MS.gene92100:CDS | 35.0% | |
| TAAACACTGTAGAAAACTGG+AGG | - | chr8.3:64782539-64782558 | None:intergenic | 35.0% | |
| TAAATAATGCCTACATAGGG+AGG | - | chr8.3:64782686-64782705 | None:intergenic | 35.0% | |
| TAAGGTTGTTCTGATTGGAT+TGG | + | chr8.3:64782962-64782981 | MS.gene92100:intron | 35.0% | |
| TAGAGGATGCATAAAGTTCT+TGG | - | chr8.3:64781094-64781113 | None:intergenic | 35.0% | |
| TCCAGTTTCAGTCAAAATAG+GGG | + | chr8.3:64783333-64783352 | MS.gene92100:intron | 35.0% | |
| ! | AATTTGCTCACCACATTTAC+TGG | - | chr8.3:64783470-64783489 | None:intergenic | 35.0% |
| ! | AGAGAGAGTATAATCAAAGG+TGG | - | chr8.3:64782567-64782586 | None:intergenic | 35.0% |
| ! | AGGAGAGAGAGTATAATCAA+AGG | - | chr8.3:64782570-64782589 | None:intergenic | 35.0% |
| ! | TAGTAGGATGTTAGTTTCTC+GGG | + | chr8.3:64783190-64783209 | MS.gene92100:intron | 35.0% |
| ! | TTGGCTTCTTCTTTCTTTTC+AGG | - | chr8.3:64783542-64783561 | None:intergenic | 35.0% |
| ! | TTTCATGCCTTTTCCTCAAT+GGG | - | chr8.3:64781968-64781987 | None:intergenic | 35.0% |
| !! | TTCTTTCTTTTCAGGCTCTT+TGG | - | chr8.3:64783534-64783553 | None:intergenic | 35.0% |
| AAGTTAAGGAACGTTGAAGG+AGG | - | chr8.3:64783241-64783260 | None:intergenic | 40.0% | |
| ACCAAAGAATCAGAGGATCA+AGG | - | chr8.3:64781753-64781772 | None:intergenic | 40.0% | |
| ACTTTCTCCCATTGAGGAAA+AGG | + | chr8.3:64781958-64781977 | MS.gene92100:intron | 40.0% | |
| AGAAGAAGGAAAGAAGGAAG+AGG | + | chr8.3:64783580-64783599 | MS.gene92100:CDS | 40.0% | |
| AGTTTCAGTCAAAATAGGGG+GGG | + | chr8.3:64783336-64783355 | MS.gene92100:intron | 40.0% | |
| CACCAGATCCTATTCAAGAA+TGG | + | chr8.3:64783657-64783676 | MS.gene92100:CDS | 40.0% | |
| CAGTTTCAGTCAAAATAGGG+GGG | + | chr8.3:64783335-64783354 | MS.gene92100:intron | 40.0% | |
| CATTCTTGAATAGGATCTGG+TGG | - | chr8.3:64783659-64783678 | None:intergenic | 40.0% | |
| CCAAAGAATCAGAGGATCAA+GGG | - | chr8.3:64781752-64781771 | None:intergenic | 40.0% | |
| CCAGTTTCAGTCAAAATAGG+GGG | + | chr8.3:64783334-64783353 | MS.gene92100:intron | 40.0% | |
| CTATACATGTTTCGGTAGCT+TGG | - | chr8.3:64783269-64783288 | None:intergenic | 40.0% | |
| CTCTTTCATGTCCATTGAGA+TGG | - | chr8.3:64783417-64783436 | None:intergenic | 40.0% | |
| GAAGAAGGAAAGAAGGAAGA+GGG | + | chr8.3:64783581-64783600 | MS.gene92100:CDS | 40.0% | |
| GAAGAGGGAAAGAAAGAAGA+AGG | + | chr8.3:64783596-64783615 | MS.gene92100:CDS | 40.0% | |
| GAGAAGAAACTGACAGTGAT+AGG | + | chr8.3:64783434-64783453 | MS.gene92100:CDS | 40.0% | |
| GAGGATCAAGGGTTAAAATC+AGG | - | chr8.3:64781741-64781760 | None:intergenic | 40.0% | |
| GGTAAGTTAAGGAACGTTGA+AGG | - | chr8.3:64783244-64783263 | None:intergenic | 40.0% | |
| TCATCAACTTTCTCCCATTG+AGG | + | chr8.3:64781952-64781971 | MS.gene92100:intron | 40.0% | |
| TGATGACAAGGACAAGAAGA+AGG | + | chr8.3:64781401-64781420 | MS.gene92100:CDS | 40.0% | |
| TGCAAGTCATTTGCTTGTAG+TGG | - | chr8.3:64782858-64782877 | None:intergenic | 40.0% | |
| TTGAAGGAGGTTAAAGGAGA+AGG | - | chr8.3:64783228-64783247 | None:intergenic | 40.0% | |
| TTGGCTTCAGATGCTACAAA+GGG | + | chr8.3:64781929-64781948 | MS.gene92100:intron | 40.0% | |
| ! | GTTTCATGCCTTTTCCTCAA+TGG | - | chr8.3:64781969-64781988 | None:intergenic | 40.0% |
| ! | TCTCTTCCATGCTTTGAACA+TGG | - | chr8.3:64783727-64783746 | None:intergenic | 40.0% |
| ! | TTTGGCTTCAGATGCTACAA+AGG | + | chr8.3:64781928-64781947 | MS.gene92100:intron | 40.0% |
| !! | GTAGCTTGGTTGGTAAGTTA+AGG | - | chr8.3:64783255-64783274 | None:intergenic | 40.0% |
| ACATGTTTCGGTAGCTTGGT+TGG | - | chr8.3:64783265-64783284 | None:intergenic | 45.0% | |
| AGACAATCTCCTCCCTATGT+AGG | + | chr8.3:64782674-64782693 | MS.gene92100:intron | 45.0% | |
| AGGGATTGATGCCATCTCAA+TGG | + | chr8.3:64783403-64783422 | MS.gene92100:intron | 45.0% | |
| CCCTTGATCCTCTGATTCTT+TGG | + | chr8.3:64781749-64781768 | MS.gene92100:intron | 45.0% | |
| CTTGAATAGGATCTGGTGGT+GGG | - | chr8.3:64783655-64783674 | None:intergenic | 45.0% | |
| GGAACGTTGAAGGAGGTTAA+AGG | - | chr8.3:64783234-64783253 | None:intergenic | 45.0% | |
| TCTTGAATAGGATCTGGTGG+TGG | - | chr8.3:64783656-64783675 | None:intergenic | 45.0% | |
| ! | TTGAATAGGATCTGGTGGTG+GGG | - | chr8.3:64783654-64783673 | None:intergenic | 45.0% |
| !! | TTCTTTTCAGGCTCTTTGGC+TGG | - | chr8.3:64783530-64783549 | None:intergenic | 45.0% |
| !!! | CCCCCTATTTTGACTGAAAC+TGG | - | chr8.3:64783337-64783356 | None:intergenic | 45.0% |
| GAGGTTAAAGGAGAAGGTCG+TGG | - | chr8.3:64783222-64783241 | None:intergenic | 50.0% | |
| !! | TGAATAGGATCTGGTGGTGG+GGG | - | chr8.3:64783653-64783672 | None:intergenic | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 64780964 | 64783772 | 64780964 | ID=MS.gene92100 |
| chr8.3 | mRNA | 64780964 | 64783772 | 64780964 | ID=MS.gene92100.t1;Parent=MS.gene92100 |
| chr8.3 | exon | 64780964 | 64780969 | 64780964 | ID=MS.gene92100.t1.exon1;Parent=MS.gene92100.t1 |
| chr8.3 | CDS | 64780964 | 64780969 | 64780964 | ID=cds.MS.gene92100.t1;Parent=MS.gene92100.t1 |
| chr8.3 | exon | 64781375 | 64781450 | 64781375 | ID=MS.gene92100.t1.exon2;Parent=MS.gene92100.t1 |
| chr8.3 | CDS | 64781375 | 64781450 | 64781375 | ID=cds.MS.gene92100.t1;Parent=MS.gene92100.t1 |
| chr8.3 | exon | 64783405 | 64783772 | 64783405 | ID=MS.gene92100.t1.exon3;Parent=MS.gene92100.t1 |
| chr8.3 | CDS | 64783405 | 64783772 | 64783405 | ID=cds.MS.gene92100.t1;Parent=MS.gene92100.t1 |
| Gene Sequence |
| Protein sequence |
