Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92212.t1 | XP_013447443.1 | 92.4 | 301 | 23 | 0 | 1 | 301 | 1 | 301 | 1.30E-132 | 482.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92212.t1 | Q9M886 | 56.1 | 285 | 81 | 4 | 1 | 281 | 1 | 245 | 4.3e-76 | 286.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92212.t1 | A0A072TVI9 | 92.4 | 301 | 23 | 0 | 1 | 301 | 1 | 301 | 9.3e-133 | 482.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene92212.t1 | TF | LOB |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055159 | MS.gene92212 | 0.817038 | 4.06E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92212.t1 | MTR_7g007010 | 97.010 | 301 | 9 | 0 | 1 | 301 | 1 | 301 | 0.0 | 597 |
| MS.gene92212.t1 | MTR_6g018270 | 60.000 | 310 | 83 | 9 | 1 | 301 | 1 | 278 | 1.36e-112 | 327 |
| MS.gene92212.t1 | MTR_6g453130 | 44.395 | 223 | 114 | 4 | 1 | 213 | 1 | 223 | 9.80e-58 | 185 |
| MS.gene92212.t1 | MTR_4g095600 | 50.888 | 169 | 67 | 2 | 3 | 159 | 1 | 165 | 1.85e-54 | 177 |
| MS.gene92212.t1 | MTR_1g110840 | 45.673 | 208 | 99 | 5 | 1 | 196 | 1 | 206 | 2.71e-53 | 174 |
| MS.gene92212.t1 | MTR_6g054150 | 51.149 | 174 | 68 | 6 | 1 | 164 | 1 | 167 | 1.40e-52 | 172 |
| MS.gene92212.t1 | MTR_5g015880 | 64.545 | 110 | 39 | 0 | 3 | 112 | 1 | 110 | 6.08e-52 | 171 |
| MS.gene92212.t1 | MTR_6g054080 | 50.575 | 174 | 69 | 6 | 1 | 164 | 1 | 167 | 1.84e-51 | 169 |
| MS.gene92212.t1 | MTR_1g106420 | 60.577 | 104 | 41 | 0 | 3 | 106 | 1 | 104 | 7.67e-45 | 151 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92212.t1 | AT3G02550 | 60.351 | 285 | 69 | 4 | 1 | 281 | 1 | 245 | 2.15e-113 | 328 |
| MS.gene92212.t1 | AT1G67100 | 82.270 | 141 | 22 | 2 | 1 | 138 | 1 | 141 | 9.89e-83 | 249 |
| MS.gene92212.t1 | AT1G68510 | 62.941 | 170 | 53 | 2 | 1 | 160 | 1 | 170 | 3.24e-74 | 228 |
| MS.gene92212.t1 | AT3G49940 | 70.000 | 110 | 33 | 0 | 3 | 112 | 1 | 110 | 2.92e-55 | 179 |
| MS.gene92212.t1 | AT5G67420 | 65.455 | 110 | 38 | 0 | 3 | 112 | 1 | 110 | 3.98e-54 | 177 |
| MS.gene92212.t1 | AT5G67420 | 65.455 | 110 | 38 | 0 | 3 | 112 | 1 | 110 | 3.98e-54 | 177 |
| MS.gene92212.t1 | AT4G37540 | 66.667 | 111 | 37 | 0 | 3 | 113 | 1 | 111 | 3.42e-53 | 174 |
Find 97 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCGACTGAACCGTAAAT+TGG | 0.188374 | 7.1:-87185666 | None:intergenic |
| GTGGCATTAGCTTGTGATTC+AGG | 0.204656 | 7.1:-87185243 | None:intergenic |
| ACCAGCACGGCCGTAGAATT+TGG | 0.270858 | 7.1:-87185277 | None:intergenic |
| GGCTCATGGAATGTGGAGTT+GGG | 0.290152 | 7.1:+87186293 | MS.gene92212:CDS |
| TGGAGAGGAAAAGGTTGGTT+TGG | 0.330903 | 7.1:+87186181 | MS.gene92212:CDS |
| GTTGGTTTGGAGCTGACTCT+TGG | 0.364251 | 7.1:+87186194 | MS.gene92212:CDS |
| CGAATAGTGAACCCAATTTA+CGG | 0.368957 | 7.1:+87185654 | MS.gene92212:CDS |
| CTCTCACTGGTTCGGTCAAC+CGG | 0.379598 | 7.1:-87186158 | None:intergenic |
| GCAGCTGCTTCCGAAGTTAT+CGG | 0.380995 | 7.1:-87185759 | None:intergenic |
| CTCTTCTTGTATCTTCGGCT+TGG | 0.390746 | 7.1:-87185910 | None:intergenic |
| CCTCTCCACTCTCACTGGTT+CGG | 0.397640 | 7.1:-87186166 | None:intergenic |
| GGAGTTGGGGCTTCAATATC+CGG | 0.399627 | 7.1:+87186307 | MS.gene92212:CDS |
| GAAAAGAAGGGTTGTATTGA+AGG | 0.400262 | 7.1:+87186259 | MS.gene92212:CDS |
| ACGTGATAAACGCGTGAAAC+CGG | 0.400688 | 7.1:-87186224 | None:intergenic |
| TGGCTCATGGAATGTGGAGT+TGG | 0.402516 | 7.1:+87186292 | MS.gene92212:CDS |
| TTGGTTTGGAGCTGACTCTT+GGG | 0.409856 | 7.1:+87186195 | MS.gene92212:CDS |
| GATCTTATTTAGAGATGAAC+CGG | 0.409879 | 7.1:+87186115 | MS.gene92212:CDS |
| TGACACATGACGGATGTCAT+AGG | 0.412076 | 7.1:-87185808 | None:intergenic |
| CAGTGAGAGTGGAGAGGAAA+AGG | 0.413870 | 7.1:+87186172 | MS.gene92212:CDS |
| GTCTGAGGCGGTTGCGTTGG+TGG | 0.415235 | 7.1:+87186055 | MS.gene92212:CDS |
| GCTGACTCTTGGGCTTGAAC+CGG | 0.417029 | 7.1:+87186205 | MS.gene92212:CDS |
| CGGTTCATCACCTCCTCAAC+CGG | 0.421068 | 7.1:-87185999 | None:intergenic |
| GCCAAATTCTACGGCCGTGC+TGG | 0.422056 | 7.1:+87185276 | MS.gene92212:CDS |
| ACCGGTCGGCTCAGTTGAAC+CGG | 0.430775 | 7.1:-87185967 | None:intergenic |
| AACCGACTGAACCGTAAATT+GGG | 0.433750 | 7.1:-87185665 | None:intergenic |
| ACGGTTCAGTCGGTTTATTA+TGG | 0.442488 | 7.1:+87185673 | MS.gene92212:CDS |
| GCCGACCGGTTCGGTTGAAC+CGG | 0.442999 | 7.1:+87185980 | MS.gene92212:CDS |
| CGAACCTGGACGAAGATGTT+CGG | 0.443982 | 7.1:-87185325 | None:intergenic |
| TGGCATTAGCTTGTGATTCA+GGG | 0.445704 | 7.1:-87185242 | None:intergenic |
| GAACCTGGACGAAGATGTTC+GGG | 0.446611 | 7.1:-87185324 | None:intergenic |
| GTATTGAAGGATTGTGGTGT+TGG | 0.451012 | 7.1:+87186272 | MS.gene92212:CDS |
| GAGAGTGGAGAGGAAAAGGT+TGG | 0.454972 | 7.1:+87186176 | MS.gene92212:CDS |
| CTTCGGAAGCAGCTGCTAAC+GGG | 0.456571 | 7.1:+87185766 | MS.gene92212:CDS |
| CCAGTCTGAGGCGGTTGCGT+TGG | 0.463877 | 7.1:+87186052 | MS.gene92212:CDS |
| GAAGCAGCTGCTAACGGGAG+GGG | 0.464479 | 7.1:+87185771 | MS.gene92212:CDS |
| TTCAACTGAGCCGACCGGTT+CGG | 0.472535 | 7.1:+87185971 | MS.gene92212:CDS |
| CTCAACCGGTTCAACCGAAC+CGG | 0.476475 | 7.1:-87185985 | None:intergenic |
| GAGAACAAGGGATTTGAATC+CGG | 0.487023 | 7.1:+87185948 | MS.gene92212:CDS |
| GAGGCGGTTGCGTTGGTGGA+TGG | 0.487638 | 7.1:+87186059 | MS.gene92212:CDS |
| ATTTAGAGATGAACCGGAGT+TGG | 0.489333 | 7.1:+87186121 | MS.gene92212:CDS |
| CGGTTCGGTTGAACCGGTTG+AGG | 0.489995 | 7.1:+87185986 | MS.gene92212:CDS |
| GTGTTTCTCGCCAAATTCTA+CGG | 0.491931 | 7.1:+87185267 | MS.gene92212:CDS |
| GTTTATTATGGTCTGGAAGT+TGG | 0.494688 | 7.1:+87185685 | MS.gene92212:CDS |
| AAGCCAAACCCGGTCTAAGC+CGG | 0.498806 | 7.1:-87186326 | None:intergenic |
| TGGTTCCTGTGAAGAAAAGA+AGG | 0.501528 | 7.1:+87186246 | MS.gene92212:CDS |
| TCCGAAGTTATCGGCGTGAT+CGG | 0.502268 | 7.1:-87185750 | None:intergenic |
| ATGTCATAGGCTTTGAGTGG+TGG | 0.508004 | 7.1:-87185795 | None:intergenic |
| GAGATGAACCGGAGTTGGAC+CGG | 0.508299 | 7.1:+87186126 | MS.gene92212:CDS |
| GACTCTTTGTTGAGTTAACT+CGG | 0.513097 | 7.1:-87185856 | None:intergenic |
| CCAACGCAACCGCCTCAGAC+TGG | 0.515999 | 7.1:-87186052 | None:intergenic |
| AGGATTGTGGTGTTGGCTCA+TGG | 0.516288 | 7.1:+87186279 | MS.gene92212:CDS |
| TCAGTCGGTTTATTATGGTC+TGG | 0.516532 | 7.1:+87185678 | MS.gene92212:CDS |
| GTTCGGGACCGGCGTTAACA+AGG | 0.520425 | 7.1:-87185308 | None:intergenic |
| CGGTTGAGGAGGTGATGAAC+CGG | 0.528263 | 7.1:+87186000 | MS.gene92212:CDS |
| AAAGAGTAGTAACGAGAACA+AGG | 0.530460 | 7.1:+87185935 | MS.gene92212:CDS |
| ACTTCGGAAGCAGCTGCTAA+CGG | 0.537457 | 7.1:+87185765 | MS.gene92212:CDS |
| TGTCATAGGCTTTGAGTGGT+GGG | 0.543552 | 7.1:-87185794 | None:intergenic |
| GGTTGTAGAGTACTAAGAAA+AGG | 0.544678 | 7.1:+87185171 | MS.gene92212:CDS |
| GCTCATGGAATGTGGAGTTG+GGG | 0.544869 | 7.1:+87186294 | MS.gene92212:CDS |
| TTCGGTTGAACCGGTTGAGG+AGG | 0.552024 | 7.1:+87185989 | MS.gene92212:CDS |
| GGTCCCGAACATCTTCGTCC+AGG | 0.558956 | 7.1:+87185321 | MS.gene92212:CDS |
| CGGAAGCAGCTGCTAACGGG+AGG | 0.561761 | 7.1:+87185769 | MS.gene92212:CDS |
| TGGACGAAGATGTTCGGGAC+CGG | 0.564250 | 7.1:-87185319 | None:intergenic |
| ACCGATCACGCCGATAACTT+CGG | 0.564329 | 7.1:+87185749 | MS.gene92212:CDS |
| AACCCAATTTACGGTTCAGT+CGG | 0.566554 | 7.1:+87185663 | MS.gene92212:CDS |
| TGACATCCGTCATGTGTCAA+AGG | 0.571163 | 7.1:+87185812 | MS.gene92212:CDS |
| GTTGACCGAACCAGTGAGAG+TGG | 0.575650 | 7.1:+87186161 | MS.gene92212:CDS |
| TTTCCTCCTTTGACACATGA+CGG | 0.578090 | 7.1:-87185818 | None:intergenic |
| GGAAGCAGCTGCTAACGGGA+GGG | 0.580906 | 7.1:+87185770 | MS.gene92212:CDS |
| CTCAACAAAGAGTCAAGACT+CGG | 0.582942 | 7.1:+87185865 | MS.gene92212:CDS |
| TGGTGTTGGCTCATGGAATG+TGG | 0.583661 | 7.1:+87186286 | MS.gene92212:CDS |
| TGTGTCAAAGGAGGAAAACT+CGG | 0.592571 | 7.1:+87185824 | MS.gene92212:CDS |
| TCCGGTTCAACTGAGCCGAC+CGG | 0.592967 | 7.1:+87185966 | MS.gene92212:CDS |
| GCATAAGACCTTGTTTACAA+TGG | 0.593219 | 7.1:+87185211 | MS.gene92212:CDS |
| GGTTTCACGCGTTTATCACG+TGG | 0.593523 | 7.1:+87186226 | MS.gene92212:CDS |
| TCAAGACTCGGTCGCGTAAG+CGG | 0.609713 | 7.1:+87185877 | MS.gene92212:CDS |
| AGGGTTGTATTGAAGGATTG+TGG | 0.614044 | 7.1:+87186266 | MS.gene92212:CDS |
| AAAATGCGGATGAGTTGTAA+CGG | 0.616520 | 7.1:+87185150 | None:intergenic |
| GTCGATTAGCCACCAGTCTG+AGG | 0.618436 | 7.1:+87186040 | MS.gene92212:CDS |
| CAAGCCGAAGATACAAGAAG+AGG | 0.623975 | 7.1:+87185911 | MS.gene92212:CDS |
| GTTGGACCGGAAAATGAAGC+CGG | 0.627386 | 7.1:+87186139 | MS.gene92212:CDS |
| ACCGGTTCAACCGAACCGGT+CGG | 0.636400 | 7.1:-87185981 | None:intergenic |
| ACGCAACCGCCTCAGACTGG+TGG | 0.636669 | 7.1:-87186049 | None:intergenic |
| ACGACTCATGACTAGCTGAC+CGG | 0.638954 | 7.1:-87186019 | None:intergenic |
| GTAGAATTTGGCGAGAAACA+CGG | 0.639416 | 7.1:-87185265 | None:intergenic |
| GCAGCTATGTCAAGCCGCAG+TGG | 0.645652 | 7.1:+87185707 | MS.gene92212:CDS |
| CTCATGAACCTTGTTAACGC+CGG | 0.654635 | 7.1:+87185300 | MS.gene92212:CDS |
| CATCCGTCATGTGTCAAAGG+AGG | 0.657307 | 7.1:+87185815 | MS.gene92212:CDS |
| TCGTTGTTGTACGAAGCATG+TGG | 0.660850 | 7.1:+87185630 | MS.gene92212:CDS |
| CCGAACCAGTGAGAGTGGAG+AGG | 0.672740 | 7.1:+87186166 | MS.gene92212:CDS |
| GGTTCCTGTGAAGAAAAGAA+GGG | 0.688577 | 7.1:+87186247 | MS.gene92212:CDS |
| GATTAGCCACCAGTCTGAGG+CGG | 0.698548 | 7.1:+87186043 | MS.gene92212:CDS |
| CGGATGTCATAGGCTTTGAG+TGG | 0.702654 | 7.1:-87185798 | None:intergenic |
| AAGAGTAGTAACGAGAACAA+GGG | 0.713391 | 7.1:+87185936 | MS.gene92212:CDS |
| CAAGGTTCATGAGACCAGCA+CGG | 0.720125 | 7.1:-87185290 | None:intergenic |
| GAATTTGGCGAGAAACACGG+TGG | 0.783343 | 7.1:-87185262 | None:intergenic |
| TTTCAAAACAGCTTCCACTG+CGG | 0.791709 | 7.1:-87185721 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ACAAATATATCAACTTTTGT+TGG | - | chr7.1:87185498-87185517 | None:intergenic | 20.0% |
| ATCTCTCTATGAGAAAAAGT+TGG | + | chr7.1:87185471-87185490 | MS.gene92212:intron | 30.0% | |
| GTATTGCATGTTTGGATAAA+CGG | - | chr7.1:87185447-87185466 | None:intergenic | 30.0% | |
| TTAGTGCATGTTTAGATTGA+CGG | + | chr7.1:87185380-87185399 | MS.gene92212:intron | 30.0% | |
| ! | CTTTTGATCCATTGTAAACA+AGG | - | chr7.1:87185222-87185241 | None:intergenic | 30.0% |
| ! | GATCTTATTTAGAGATGAAC+CGG | + | chr7.1:87186115-87186134 | MS.gene92212:CDS | 30.0% |
| ! | TTTTCCTCTTCTTGTATCTT+CGG | - | chr7.1:87185918-87185937 | None:intergenic | 30.0% |
| AAAGAGTAGTAACGAGAACA+AGG | + | chr7.1:87185935-87185954 | MS.gene92212:CDS | 35.0% | |
| AAGAGTAGTAACGAGAACAA+GGG | + | chr7.1:87185936-87185955 | MS.gene92212:CDS | 35.0% | |
| AGATGTGTGTATTGCATGTT+TGG | - | chr7.1:87185455-87185474 | None:intergenic | 35.0% | |
| CGAATAGTGAACCCAATTTA+CGG | + | chr7.1:87185654-87185673 | MS.gene92212:CDS | 35.0% | |
| GAAAAGAAGGGTTGTATTGA+AGG | + | chr7.1:87186259-87186278 | MS.gene92212:CDS | 35.0% | |
| GACTCTTTGTTGAGTTAACT+CGG | - | chr7.1:87185859-87185878 | None:intergenic | 35.0% | |
| GTTTATTATGGTCTGGAAGT+TGG | + | chr7.1:87185685-87185704 | MS.gene92212:CDS | 35.0% | |
| ! | GCATAAGACCTTGTTTACAA+TGG | + | chr7.1:87185211-87185230 | MS.gene92212:CDS | 35.0% |
| ! | GGTTGTAGAGTACTAAGAAA+AGG | + | chr7.1:87185171-87185190 | MS.gene92212:CDS | 35.0% |
| AAACCGACTGAACCGTAAAT+TGG | - | chr7.1:87185669-87185688 | None:intergenic | 40.0% | |
| AACCCAATTTACGGTTCAGT+CGG | + | chr7.1:87185663-87185682 | MS.gene92212:CDS | 40.0% | |
| AACCGACTGAACCGTAAATT+GGG | - | chr7.1:87185668-87185687 | None:intergenic | 40.0% | |
| AGGGTTGTATTGAAGGATTG+TGG | + | chr7.1:87186266-87186285 | MS.gene92212:CDS | 40.0% | |
| ATTTAGAGATGAACCGGAGT+TGG | + | chr7.1:87186121-87186140 | MS.gene92212:CDS | 40.0% | |
| CTCAACAAAGAGTCAAGACT+CGG | + | chr7.1:87185865-87185884 | MS.gene92212:CDS | 40.0% | |
| GAGAACAAGGGATTTGAATC+CGG | + | chr7.1:87185948-87185967 | MS.gene92212:CDS | 40.0% | |
| GGTTCCTGTGAAGAAAAGAA+GGG | + | chr7.1:87186247-87186266 | MS.gene92212:CDS | 40.0% | |
| GTAGAATTTGGCGAGAAACA+CGG | - | chr7.1:87185268-87185287 | None:intergenic | 40.0% | |
| GTATTGAAGGATTGTGGTGT+TGG | + | chr7.1:87186272-87186291 | MS.gene92212:CDS | 40.0% | |
| GTGTTTCTCGCCAAATTCTA+CGG | + | chr7.1:87185267-87185286 | MS.gene92212:CDS | 40.0% | |
| TGGTTCCTGTGAAGAAAAGA+AGG | + | chr7.1:87186246-87186265 | MS.gene92212:CDS | 40.0% | |
| TGTGTCAAAGGAGGAAAACT+CGG | + | chr7.1:87185824-87185843 | MS.gene92212:CDS | 40.0% | |
| TTTCAAAACAGCTTCCACTG+CGG | - | chr7.1:87185724-87185743 | None:intergenic | 40.0% | |
| TTTCCTCCTTTGACACATGA+CGG | - | chr7.1:87185821-87185840 | None:intergenic | 40.0% | |
| ! | ACAACCCTTCTTTTCTTCAC+AGG | - | chr7.1:87186254-87186273 | None:intergenic | 40.0% |
| ! | ACGGTTCAGTCGGTTTATTA+TGG | + | chr7.1:87185673-87185692 | MS.gene92212:CDS | 40.0% |
| ! | TCAGTCGGTTTATTATGGTC+TGG | + | chr7.1:87185678-87185697 | MS.gene92212:CDS | 40.0% |
| !! | TGGCATTAGCTTGTGATTCA+GGG | - | chr7.1:87185245-87185264 | None:intergenic | 40.0% |
| !!! | AGTGTCACTTTTTACGAACC+TGG | - | chr7.1:87185342-87185361 | None:intergenic | 40.0% |
| ACGTGATAAACGCGTGAAAC+CGG | - | chr7.1:87186227-87186246 | None:intergenic | 45.0% | |
| CAAGCCGAAGATACAAGAAG+AGG | + | chr7.1:87185911-87185930 | MS.gene92212:CDS | 45.0% | |
| CTCATGAACCTTGTTAACGC+CGG | + | chr7.1:87185300-87185319 | MS.gene92212:CDS | 45.0% | |
| CTCTTCTTGTATCTTCGGCT+TGG | - | chr7.1:87185913-87185932 | None:intergenic | 45.0% | |
| TCGTTGTTGTACGAAGCATG+TGG | + | chr7.1:87185630-87185649 | MS.gene92212:CDS | 45.0% | |
| TGACATCCGTCATGTGTCAA+AGG | + | chr7.1:87185812-87185831 | MS.gene92212:CDS | 45.0% | |
| ! | TGGAGAGGAAAAGGTTGGTT+TGG | + | chr7.1:87186181-87186200 | MS.gene92212:CDS | 45.0% |
| ! | TTCATTTTCCGGTCCAACTC+CGG | - | chr7.1:87186137-87186156 | None:intergenic | 45.0% |
| !! | ATGTCATAGGCTTTGAGTGG+TGG | - | chr7.1:87185798-87185817 | None:intergenic | 45.0% |
| !! | GCAGTGGAAGCTGTTTTGAA+AGG | + | chr7.1:87185723-87185742 | MS.gene92212:CDS | 45.0% |
| !! | GTGGCATTAGCTTGTGATTC+AGG | - | chr7.1:87185246-87185265 | None:intergenic | 45.0% |
| !! | TGACACATGACGGATGTCAT+AGG | - | chr7.1:87185811-87185830 | None:intergenic | 45.0% |
| !! | TGTCATAGGCTTTGAGTGGT+GGG | - | chr7.1:87185797-87185816 | None:intergenic | 45.0% |
| !! | TTGGTTTGGAGCTGACTCTT+GGG | + | chr7.1:87186195-87186214 | MS.gene92212:CDS | 45.0% |
| ACCGATCACGCCGATAACTT+CGG | + | chr7.1:87185749-87185768 | MS.gene92212:CDS | 50.0% | |
| ACTTCGGAAGCAGCTGCTAA+CGG | + | chr7.1:87185765-87185784 | MS.gene92212:CDS | 50.0% | |
| CAAGGTTCATGAGACCAGCA+CGG | - | chr7.1:87185293-87185312 | None:intergenic | 50.0% | |
| CAGTGAGAGTGGAGAGGAAA+AGG | + | chr7.1:87186172-87186191 | MS.gene92212:CDS | 50.0% | |
| CATCCGTCATGTGTCAAAGG+AGG | + | chr7.1:87185815-87185834 | MS.gene92212:CDS | 50.0% | |
| CGAACCTGGACGAAGATGTT+CGG | - | chr7.1:87185328-87185347 | None:intergenic | 50.0% | |
| GAACCTGGACGAAGATGTTC+GGG | - | chr7.1:87185327-87185346 | None:intergenic | 50.0% | |
| GAATTTGGCGAGAAACACGG+TGG | - | chr7.1:87185265-87185284 | None:intergenic | 50.0% | |
| GAGAGTGGAGAGGAAAAGGT+TGG | + | chr7.1:87186176-87186195 | MS.gene92212:CDS | 50.0% | |
| GCAGCTGCTTCCGAAGTTAT+CGG | - | chr7.1:87185762-87185781 | None:intergenic | 50.0% | |
| GCTCATGGAATGTGGAGTTG+GGG | + | chr7.1:87186294-87186313 | MS.gene92212:CDS | 50.0% | |
| GGAGTTGGGGCTTCAATATC+CGG | + | chr7.1:87186307-87186326 | MS.gene92212:CDS | 50.0% | |
| GGCTCATGGAATGTGGAGTT+GGG | + | chr7.1:87186293-87186312 | MS.gene92212:CDS | 50.0% | |
| GGTTTCACGCGTTTATCACG+TGG | + | chr7.1:87186226-87186245 | MS.gene92212:CDS | 50.0% | |
| GTTGGACCGGAAAATGAAGC+CGG | + | chr7.1:87186139-87186158 | MS.gene92212:CDS | 50.0% | |
| TCCGAAGTTATCGGCGTGAT+CGG | - | chr7.1:87185753-87185772 | None:intergenic | 50.0% | |
| TGGCTCATGGAATGTGGAGT+TGG | + | chr7.1:87186292-87186311 | MS.gene92212:CDS | 50.0% | |
| ! | ACGACTCATGACTAGCTGAC+CGG | - | chr7.1:87186022-87186041 | None:intergenic | 50.0% |
| ! | CTTTTCCTCTCCACTCTCAC+TGG | - | chr7.1:87186174-87186193 | None:intergenic | 50.0% |
| !! | AGGATTGTGGTGTTGGCTCA+TGG | + | chr7.1:87186279-87186298 | MS.gene92212:CDS | 50.0% |
| !! | CGGATGTCATAGGCTTTGAG+TGG | - | chr7.1:87185801-87185820 | None:intergenic | 50.0% |
| !! | GGTCAACCGGCTTCATTTTC+CGG | - | chr7.1:87186148-87186167 | None:intergenic | 50.0% |
| !! | GTTGGTTTGGAGCTGACTCT+TGG | + | chr7.1:87186194-87186213 | MS.gene92212:CDS | 50.0% |
| !! | TGGTGTTGGCTCATGGAATG+TGG | + | chr7.1:87186286-87186305 | MS.gene92212:CDS | 50.0% |
| ACCAGCACGGCCGTAGAATT+TGG | - | chr7.1:87185280-87185299 | None:intergenic | 55.0% | |
| CGGTTCATCACCTCCTCAAC+CGG | - | chr7.1:87186002-87186021 | None:intergenic | 55.0% | |
| CGGTTGAGGAGGTGATGAAC+CGG | + | chr7.1:87186000-87186019 | MS.gene92212:CDS | 55.0% | |
| CTTCGGAAGCAGCTGCTAAC+GGG | + | chr7.1:87185766-87185785 | MS.gene92212:CDS | 55.0% | |
| GAGATGAACCGGAGTTGGAC+CGG | + | chr7.1:87186126-87186145 | MS.gene92212:CDS | 55.0% | |
| GTTGACCGAACCAGTGAGAG+TGG | + | chr7.1:87186161-87186180 | MS.gene92212:CDS | 55.0% | |
| TGGACGAAGATGTTCGGGAC+CGG | - | chr7.1:87185322-87185341 | None:intergenic | 55.0% | |
| TTCAACTGAGCCGACCGGTT+CGG | + | chr7.1:87185971-87185990 | MS.gene92212:CDS | 55.0% | |
| TTCGGTTGAACCGGTTGAGG+AGG | + | chr7.1:87185989-87186008 | MS.gene92212:CDS | 55.0% | |
| ! | CCTCTCCACTCTCACTGGTT+CGG | - | chr7.1:87186169-87186188 | None:intergenic | 55.0% |
| ! | CTCAACCGGTTCAACCGAAC+CGG | - | chr7.1:87185988-87186007 | None:intergenic | 55.0% |
| ! | GATTAGCCACCAGTCTGAGG+CGG | + | chr7.1:87186043-87186062 | MS.gene92212:CDS | 55.0% |
| ! | GCTGACTCTTGGGCTTGAAC+CGG | + | chr7.1:87186205-87186224 | MS.gene92212:CDS | 55.0% |
| ! | GTCGATTAGCCACCAGTCTG+AGG | + | chr7.1:87186040-87186059 | MS.gene92212:CDS | 55.0% |
| ! | TCAAGACTCGGTCGCGTAAG+CGG | + | chr7.1:87185877-87185896 | MS.gene92212:CDS | 55.0% |
| !! | CTCTCACTGGTTCGGTCAAC+CGG | - | chr7.1:87186161-87186180 | None:intergenic | 55.0% |
| CCGAACCAGTGAGAGTGGAG+AGG | + | chr7.1:87186166-87186185 | MS.gene92212:CDS | 60.0% | |
| GAAGCAGCTGCTAACGGGAG+GGG | + | chr7.1:87185771-87185790 | MS.gene92212:CDS | 60.0% | |
| GCAGCTATGTCAAGCCGCAG+TGG | + | chr7.1:87185707-87185726 | MS.gene92212:CDS | 60.0% | |
| GCCAAATTCTACGGCCGTGC+TGG | + | chr7.1:87185276-87185295 | MS.gene92212:CDS | 60.0% | |
| GGAAGCAGCTGCTAACGGGA+GGG | + | chr7.1:87185770-87185789 | MS.gene92212:CDS | 60.0% | |
| GGTCCCGAACATCTTCGTCC+AGG | + | chr7.1:87185321-87185340 | MS.gene92212:CDS | 60.0% | |
| GTTCGGGACCGGCGTTAACA+AGG | - | chr7.1:87185311-87185330 | None:intergenic | 60.0% | |
| TCCGGTTCAACTGAGCCGAC+CGG | + | chr7.1:87185966-87185985 | MS.gene92212:CDS | 60.0% | |
| ! | ACCGGTCGGCTCAGTTGAAC+CGG | - | chr7.1:87185970-87185989 | None:intergenic | 60.0% |
| ! | ACCGGTTCAACCGAACCGGT+CGG | - | chr7.1:87185984-87186003 | None:intergenic | 60.0% |
| !! | CGGTTCGGTTGAACCGGTTG+AGG | + | chr7.1:87185986-87186005 | MS.gene92212:CDS | 60.0% |
| ACGCAACCGCCTCAGACTGG+TGG | - | chr7.1:87186052-87186071 | None:intergenic | 65.0% | |
| CCAACGCAACCGCCTCAGAC+TGG | - | chr7.1:87186055-87186074 | None:intergenic | 65.0% | |
| CGGAAGCAGCTGCTAACGGG+AGG | + | chr7.1:87185769-87185788 | MS.gene92212:CDS | 65.0% | |
| ! | CCAGTCTGAGGCGGTTGCGT+TGG | + | chr7.1:87186052-87186071 | MS.gene92212:CDS | 65.0% |
| ! | GAGGCGGTTGCGTTGGTGGA+TGG | + | chr7.1:87186059-87186078 | MS.gene92212:CDS | 65.0% |
| ! | GTCTGAGGCGGTTGCGTTGG+TGG | + | chr7.1:87186055-87186074 | MS.gene92212:CDS | 65.0% |
| !! | GCCGACCGGTTCGGTTGAAC+CGG | + | chr7.1:87185980-87185999 | MS.gene92212:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.1 | gene | 87185153 | 87186334 | 87185153 | ID=MS.gene92212 |
| chr7.1 | mRNA | 87185153 | 87186334 | 87185153 | ID=MS.gene92212.t1;Parent=MS.gene92212 |
| chr7.1 | exon | 87185153 | 87185342 | 87185153 | ID=MS.gene92212.t1.exon1;Parent=MS.gene92212.t1 |
| chr7.1 | CDS | 87185153 | 87185342 | 87185153 | ID=cds.MS.gene92212.t1;Parent=MS.gene92212.t1 |
| chr7.1 | exon | 87185619 | 87186334 | 87185619 | ID=MS.gene92212.t1.exon2;Parent=MS.gene92212.t1 |
| chr7.1 | CDS | 87185619 | 87186334 | 87185619 | ID=cds.MS.gene92212.t1;Parent=MS.gene92212.t1 |
| Gene Sequence |
| Protein sequence |
