Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92312.t1 | KEH27344.1 | 99.4 | 777 | 5 | 0 | 1 | 777 | 1 | 777 | 0.00E+00 | 1528.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92312.t1 | P92943 | 83.6 | 776 | 119 | 5 | 1 | 774 | 1 | 770 | 0.0e+00 | 1284.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92312.t1 | A0A072UC04 | 99.4 | 777 | 5 | 0 | 1 | 777 | 1 | 777 | 0.0e+00 | 1528.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene58021 | MS.gene92312 | PPI |
| MS.gene036703 | MS.gene92312 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92312.t1 | MTR_5g005990 | 99.356 | 777 | 5 | 0 | 1 | 777 | 1 | 777 | 0.0 | 1581 |
| MS.gene92312.t1 | MTR_5g005990 | 99.354 | 774 | 5 | 0 | 1 | 774 | 1 | 774 | 0.0 | 1577 |
| MS.gene92312.t1 | MTR_5g005990 | 99.352 | 772 | 5 | 0 | 1 | 772 | 1 | 772 | 0.0 | 1572 |
| MS.gene92312.t1 | MTR_5g005990 | 99.188 | 616 | 5 | 0 | 162 | 777 | 12 | 627 | 0.0 | 1255 |
| MS.gene92312.t1 | MTR_5g005990 | 99.182 | 611 | 5 | 0 | 162 | 772 | 12 | 622 | 0.0 | 1248 |
| MS.gene92312.t1 | MTR_7g029345 | 46.217 | 727 | 362 | 13 | 44 | 756 | 64 | 775 | 0.0 | 617 |
| MS.gene92312.t1 | MTR_4g134730 | 50.070 | 719 | 336 | 13 | 46 | 758 | 61 | 762 | 0.0 | 614 |
| MS.gene92312.t1 | MTR_2g005410 | 46.606 | 766 | 366 | 17 | 5 | 756 | 10 | 746 | 0.0 | 602 |
| MS.gene92312.t1 | MTR_6g023770 | 46.186 | 721 | 362 | 12 | 44 | 756 | 52 | 754 | 0.0 | 583 |
| MS.gene92312.t1 | MTR_6g065650 | 46.528 | 720 | 361 | 13 | 46 | 758 | 78 | 780 | 0.0 | 576 |
| MS.gene92312.t1 | MTR_6g023770 | 45.915 | 710 | 358 | 12 | 55 | 756 | 10 | 701 | 0.0 | 569 |
| MS.gene92312.t1 | MTR_4g115640 | 44.372 | 764 | 400 | 15 | 1 | 758 | 1 | 745 | 0.0 | 550 |
| MS.gene92312.t1 | MTR_6g023770 | 47.114 | 641 | 315 | 10 | 123 | 756 | 2 | 625 | 5.85e-178 | 525 |
| MS.gene92312.t1 | MTR_6g065650 | 46.533 | 649 | 323 | 12 | 117 | 758 | 3 | 634 | 1.35e-174 | 516 |
| MS.gene92312.t1 | MTR_5g009580 | 39.665 | 179 | 88 | 3 | 445 | 618 | 3 | 166 | 6.19e-16 | 77.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92312.t1 | AT5G26240 | 83.269 | 777 | 123 | 4 | 1 | 776 | 1 | 771 | 0.0 | 1249 |
| MS.gene92312.t1 | AT5G26240 | 83.634 | 776 | 119 | 5 | 1 | 774 | 1 | 770 | 0.0 | 1248 |
| MS.gene92312.t1 | AT3G27170 | 46.841 | 728 | 352 | 14 | 44 | 755 | 51 | 759 | 0.0 | 609 |
| MS.gene92312.t1 | AT5G40890 | 46.750 | 723 | 354 | 14 | 44 | 755 | 52 | 754 | 0.0 | 602 |
| MS.gene92312.t1 | AT5G49890 | 47.934 | 726 | 343 | 16 | 46 | 758 | 63 | 766 | 0.0 | 598 |
| MS.gene92312.t1 | AT5G33280 | 46.657 | 718 | 363 | 12 | 46 | 758 | 38 | 740 | 0.0 | 588 |
| MS.gene92312.t1 | AT5G40890 | 47.738 | 641 | 306 | 12 | 125 | 755 | 1 | 622 | 0.0 | 545 |
Find 168 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCCAGCGACGTATGATTTC+TGG | 0.160920 | 5.1:-956029 | None:intergenic |
| ATTGACCTGCCTCCAGTTCT+TGG | 0.169192 | 5.1:-962620 | None:intergenic |
| CCTCGTCCGTCACATGTTCT+TGG | 0.182909 | 5.1:+963022 | MS.gene92312:CDS |
| GATCAGGCGGATTCATAATA+TGG | 0.192818 | 5.1:+958646 | MS.gene92312:CDS |
| TCTTATGTGTTACAGGTATT+TGG | 0.198414 | 5.1:+956388 | MS.gene92312:intron |
| ATGGCTATTATTGGGGTTAT+TGG | 0.200647 | 5.1:+958806 | MS.gene92312:CDS |
| ATATTCCGCATCTCATATTT+AGG | 0.207653 | 5.1:-961589 | None:intergenic |
| AGTGGAAAATGTGGACATTT+TGG | 0.209488 | 5.1:+958624 | MS.gene92312:CDS |
| TTTAAGTAACCCTTGATTTC+AGG | 0.210137 | 5.1:-956144 | None:intergenic |
| AGTGGAGAACCACTTGTTAT+TGG | 0.253053 | 5.1:+962388 | MS.gene92312:CDS |
| CTATTGCCAATGGCTATTAT+TGG | 0.273238 | 5.1:+958797 | MS.gene92312:CDS |
| TATTGCCAATGGCTATTATT+GGG | 0.277008 | 5.1:+958798 | MS.gene92312:CDS |
| AGTTTCTCTGTGTGTCATTA+TGG | 0.281368 | 5.1:+961360 | MS.gene92312:CDS |
| ATTGGTCATTCTGCAGTCTA+AGG | 0.299378 | 5.1:+962565 | MS.gene92312:CDS |
| TTAACTTTCAGGCATGATTC+TGG | 0.301234 | 5.1:+962714 | MS.gene92312:intron |
| CTAACATCAGTTATTTCATT+TGG | 0.304045 | 5.1:+959270 | MS.gene92312:CDS |
| TGCACTGAACAAATTCCTTA+TGG | 0.310798 | 5.1:-959734 | None:intergenic |
| ATGAAATAACTGATGTTAGA+AGG | 0.317616 | 5.1:-959266 | None:intergenic |
| ATTTCCAGATACGCTTTGTT+AGG | 0.323758 | 5.1:+961301 | MS.gene92312:intron |
| ATATCTTCCGGTACAATATA+TGG | 0.340226 | 5.1:-962846 | None:intergenic |
| CATATTCCTTTACTAGAAAC+AGG | 0.344319 | 5.1:-962750 | None:intergenic |
| CTCTTTGCCTCGTGTTGTTA+AGG | 0.348699 | 5.1:+962218 | MS.gene92312:CDS |
| TGAATTTAGATGATACTTAG+TGG | 0.378655 | 5.1:-958096 | None:intergenic |
| CCAGATGCAGGATCAGGTTC+AGG | 0.381856 | 5.1:-959324 | None:intergenic |
| TCATCGATGATGACGGCGTT+GGG | 0.386650 | 5.1:+954060 | MS.gene92312:CDS |
| CCACGACCTCCTGGAATGTA+TGG | 0.393196 | 5.1:+959357 | MS.gene92312:CDS |
| CAGAAAAGATTTGTTAATTG+AGG | 0.395744 | 5.1:+963054 | MS.gene92312:CDS |
| GAACTGGAGGCAGGTCAATA+AGG | 0.395882 | 5.1:+962624 | MS.gene92312:CDS |
| CCTGCTGGTCAATTTGTTCC+CGG | 0.395933 | 5.1:+960265 | MS.gene92312:CDS |
| GAAATCAAGGGTTACTTAAA+CGG | 0.402587 | 5.1:+956147 | MS.gene92312:CDS |
| GCAAAGCCTGTTTCTAGTAA+AGG | 0.404882 | 5.1:+962744 | MS.gene92312:CDS |
| GGTTTAGCAGTTGTGACGTT+TGG | 0.408014 | 5.1:+960232 | MS.gene92312:CDS |
| AGGAGGCCTGTGGGAGTGGA+AGG | 0.417365 | 5.1:+961620 | MS.gene92312:CDS |
| TTTGGAAGCATTGGTTCAGT+GGG | 0.421680 | 5.1:+956406 | MS.gene92312:CDS |
| AGGCAATACAAGCACCAGTA+TGG | 0.423912 | 5.1:-956465 | None:intergenic |
| ATTATGATCGGATCAACATA+TGG | 0.426037 | 5.1:+960289 | MS.gene92312:CDS |
| ACATAATTCCCATACATTCC+AGG | 0.427755 | 5.1:-959366 | None:intergenic |
| CGAAATCATCTTCACAAGAA+AGG | 0.431872 | 5.1:+958977 | MS.gene92312:CDS |
| GTCATCGATGATGACGGCGT+TGG | 0.433396 | 5.1:+954059 | MS.gene92312:CDS |
| CAATCAAAGTTCTGAAAAGA+AGG | 0.433832 | 5.1:-956291 | None:intergenic |
| TCAACATATGGGCGTCTTGT+TGG | 0.437248 | 5.1:+960301 | MS.gene92312:CDS |
| ATTGAGTGTCCACGACCTCC+TGG | 0.441469 | 5.1:+959348 | MS.gene92312:CDS |
| GCTTGTATTGCCTCTTTGCT+CGG | 0.447312 | 5.1:+956475 | MS.gene92312:CDS |
| GCAAACAATACGCCACCAAC+TGG | 0.449386 | 5.1:-958353 | None:intergenic |
| GCAAAGGAGGCCTGTGGGAG+TGG | 0.450807 | 5.1:+961616 | MS.gene92312:CDS |
| CTAAGTATCATCTAAATTCA+AGG | 0.451345 | 5.1:+958099 | MS.gene92312:CDS |
| TTCTGCTATTGTGGCTGTTG+TGG | 0.453788 | 5.1:+958575 | MS.gene92312:CDS |
| TCACCAGCAGCTGCTGGATC+CGG | 0.455037 | 5.1:+956117 | MS.gene92312:CDS |
| GCTATTATTGGGGTTATTGG+AGG | 0.456715 | 5.1:+958809 | MS.gene92312:CDS |
| GTAAGAATGTAATACCAAAA+AGG | 0.458357 | 5.1:-959794 | None:intergenic |
| GCTGTATGTGAGTTACTTGC+TGG | 0.459222 | 5.1:+954296 | MS.gene92312:CDS |
| TGTTGTGGTGCGAACTGCGA+TGG | 0.459320 | 5.1:+958590 | MS.gene92312:CDS |
| TTACCCTCTGATCCAAGAAC+TGG | 0.461593 | 5.1:+962608 | MS.gene92312:CDS |
| TTTGGTACTGCTGTGCCTGC+TGG | 0.463985 | 5.1:+960250 | MS.gene92312:CDS |
| GTAACTTGTGGGTGTGCAGC+TGG | 0.470627 | 5.1:+958308 | MS.gene92312:CDS |
| TTAGGCTTTGAATCTAGTAA+TGG | 0.477532 | 5.1:-961571 | None:intergenic |
| ACCCTTGATTTCAGGAATAC+CGG | 0.478142 | 5.1:-956136 | None:intergenic |
| GTTACTTGCTGGTGGTGAAA+TGG | 0.478899 | 5.1:+954307 | MS.gene92312:CDS |
| GAAATCATCTTCACAAGAAA+GGG | 0.479089 | 5.1:+958978 | MS.gene92312:CDS |
| CCTGAACCTGATCCTGCATC+TGG | 0.482144 | 5.1:+959324 | MS.gene92312:CDS |
| TGTTGATCCGATCATAATAC+CGG | 0.483139 | 5.1:-960284 | None:intergenic |
| TTACACTTTATATTACTACT+TGG | 0.483261 | 5.1:+958951 | MS.gene92312:CDS |
| GCTTGTTCTTCTTATATCAA+AGG | 0.483840 | 5.1:+961423 | MS.gene92312:CDS |
| GTTGTGGTGCGAACTGCGAT+GGG | 0.486195 | 5.1:+958591 | MS.gene92312:CDS |
| TTACAGGTATTTGGAAGCAT+TGG | 0.491217 | 5.1:+956397 | MS.gene92312:intron |
| TTAATGTATTCAAAAGTGAC+CGG | 0.491673 | 5.1:+958126 | MS.gene92312:CDS |
| ATCCGGTATTCCTGAAATCA+AGG | 0.493758 | 5.1:+956134 | MS.gene92312:CDS |
| GAAGGTCCTCTAGTCCATAC+TGG | 0.493936 | 5.1:+956451 | MS.gene92312:CDS |
| CAGAAAACTCAACATTGAAG+AGG | 0.495588 | 5.1:+960345 | MS.gene92312:CDS |
| CGTATTGTTTGCATTGGAAG+AGG | 0.496165 | 5.1:+958364 | MS.gene92312:CDS |
| CTGCGAGACTCGCTTGGTCA+CGG | 0.502738 | 5.1:+954009 | MS.gene92312:CDS |
| AAAGGTGATTCATCGGAGTT+CGG | 0.503410 | 5.1:-954035 | None:intergenic |
| TGTTTCAGGATGATGCCATA+AGG | 0.506436 | 5.1:+959719 | MS.gene92312:intron |
| TTTCAGAACTTTGATTGGAA+AGG | 0.509394 | 5.1:+956297 | MS.gene92312:CDS |
| TTTGTTCCCGGTATTATGAT+CGG | 0.509495 | 5.1:+960277 | MS.gene92312:CDS |
| TGTGAATACATTAGAGCTAC+GGG | 0.515257 | 5.1:+963179 | MS.gene92312:CDS |
| ATCAGGCGGATTCATAATAT+GGG | 0.516900 | 5.1:+958647 | MS.gene92312:CDS |
| ACATCTAACATCAGAGGACT+TGG | 0.518049 | 5.1:+962785 | MS.gene92312:CDS |
| TGAAATAACTGATGTTAGAA+GGG | 0.519803 | 5.1:-959265 | None:intergenic |
| CCATACATTCCAGGAGGTCG+TGG | 0.520085 | 5.1:-959357 | None:intergenic |
| CTGTCGAATCATATTCAAAA+CGG | 0.522595 | 5.1:+953978 | MS.gene92312:CDS |
| ATTTGGAAGCATTGGTTCAG+TGG | 0.523234 | 5.1:+956405 | MS.gene92312:CDS |
| GCATTTAGAGCTCCAGTTGG+TGG | 0.525214 | 5.1:+958341 | MS.gene92312:CDS |
| TCGAATCTGCGAGACTCGCT+TGG | 0.526282 | 5.1:+954003 | MS.gene92312:CDS |
| TTTGTCAGAGACATATCTTC+CGG | 0.526313 | 5.1:-962858 | None:intergenic |
| ATGTGAATACATTAGAGCTA+CGG | 0.530337 | 5.1:+963178 | MS.gene92312:CDS |
| GGAAGCATTGGTTCAGTGGG+GGG | 0.531995 | 5.1:+956409 | MS.gene92312:CDS |
| GGGGTTATTGGAGGTCTACT+AGG | 0.533622 | 5.1:+958818 | MS.gene92312:CDS |
| TCAATACCAGATGCAGGATC+AGG | 0.533796 | 5.1:-959330 | None:intergenic |
| AGAAGAACAAGCATAATAAG+TGG | 0.536704 | 5.1:-961412 | None:intergenic |
| AGCTACGGGCAACTAGTGTA+AGG | 0.536837 | 5.1:+963193 | MS.gene92312:CDS |
| CTGATCCAAGAACTGGAGGC+AGG | 0.537268 | 5.1:+962615 | MS.gene92312:CDS |
| CAGAGGGTAAAGGACTATGC+TGG | 0.539551 | 5.1:-962595 | None:intergenic |
| TGGTTCTTTGCATTGCTCAT+CGG | 0.541879 | 5.1:+954327 | MS.gene92312:CDS |
| TTATTGGATTAGTGCTTCGC+AGG | 0.543197 | 5.1:+962404 | MS.gene92312:CDS |
| GCAGGATCAGGTTCAGGGCA+TGG | 0.544038 | 5.1:-959318 | None:intergenic |
| CAGATGCAGGATCAGGTTCA+GGG | 0.547736 | 5.1:-959323 | None:intergenic |
| TAGTAATATAAAGTGTAAGC+TGG | 0.551188 | 5.1:-958946 | None:intergenic |
| ATTGCCAATGGCTATTATTG+GGG | 0.552743 | 5.1:+958799 | MS.gene92312:CDS |
| GCCTCCAGTTCTTGGATCAG+AGG | 0.555424 | 5.1:-962612 | None:intergenic |
| TCCCTCACCATATATTGTAC+CGG | 0.557305 | 5.1:+962839 | MS.gene92312:CDS |
| TGGAAGCATTGGTTCAGTGG+GGG | 0.557432 | 5.1:+956408 | MS.gene92312:CDS |
| CCCTCTGATCCAAGAACTGG+AGG | 0.557723 | 5.1:+962611 | MS.gene92312:CDS |
| TGGTGGCGTATTGTTTGCAT+TGG | 0.559075 | 5.1:+958358 | MS.gene92312:CDS |
| ATCCAGAAATCATACGTCGC+TGG | 0.562554 | 5.1:+956027 | MS.gene92312:CDS |
| ATACCGGATCCAGCAGCTGC+TGG | 0.567300 | 5.1:-956120 | None:intergenic |
| TTACAAGATCACGGCGATCC+CGG | 0.572507 | 5.1:-958145 | None:intergenic |
| ATTCACCCTTCCACTCCCAC+AGG | 0.574638 | 5.1:-961626 | None:intergenic |
| GTTCTTGGATCAGAGGGTAA+AGG | 0.575169 | 5.1:-962605 | None:intergenic |
| GGCCTCGCTTTGGGTAAAGA+AGG | 0.576441 | 5.1:+956433 | MS.gene92312:CDS |
| GTCTTGAAAAGGTAACTTGT+GGG | 0.579265 | 5.1:+958297 | MS.gene92312:intron |
| CCTCCAGTTCTTGGATCAGA+GGG | 0.579603 | 5.1:-962611 | None:intergenic |
| CCGGGAACAAATTGACCAGC+AGG | 0.580287 | 5.1:-960265 | None:intergenic |
| TTCCGGTACAATATATGGTG+AGG | 0.583817 | 5.1:-962841 | None:intergenic |
| GTTTGCAGAGCTATTGCCAA+TGG | 0.584550 | 5.1:+958787 | MS.gene92312:CDS |
| CACGACCTCCTGGAATGTAT+GGG | 0.584630 | 5.1:+959358 | MS.gene92312:CDS |
| TGTTCAGGAGTTGATACTCA+CGG | 0.585374 | 5.1:+956265 | MS.gene92312:intron |
| GTGATTGATCACACAAGAAG+TGG | 0.585399 | 5.1:+962370 | MS.gene92312:CDS |
| AATGCCTCAAACCAAGTTGG+CGG | 0.586230 | 5.1:-962988 | None:intergenic |
| ATAACCCCAATAATAGCCAT+TGG | 0.588322 | 5.1:-958803 | None:intergenic |
| TGGTGTAAGAGTGGAAAATG+TGG | 0.588751 | 5.1:+958615 | MS.gene92312:CDS |
| GTGTGTGTTGCTCTGCAGAA+TGG | 0.590378 | 5.1:-962256 | None:intergenic |
| CCAAGAACATGTGACGGACG+AGG | 0.590840 | 5.1:-963022 | None:intergenic |
| TGGTGCGAACTGCGATGGGG+TGG | 0.591545 | 5.1:+958595 | MS.gene92312:CDS |
| GGACACTCAATACCAGATGC+AGG | 0.593824 | 5.1:-959336 | None:intergenic |
| GGAGGCCTGTGGGAGTGGAA+GGG | 0.594441 | 5.1:+961621 | MS.gene92312:CDS |
| GATGACGAAAGGTGATTCAT+CGG | 0.594698 | 5.1:-954042 | None:intergenic |
| TCCGGTACAATATATGGTGA+GGG | 0.594710 | 5.1:-962840 | None:intergenic |
| GAAGAGCAAGCTCGATTGAG+AGG | 0.597700 | 5.1:+961544 | MS.gene92312:CDS |
| GGAAGATATGTCTCTGACAA+AGG | 0.598102 | 5.1:+962860 | MS.gene92312:CDS |
| TTCATAGTCAAGACTCTCAA+CGG | 0.598773 | 5.1:-954108 | None:intergenic |
| TTATGATCGGATCAACATAT+GGG | 0.602056 | 5.1:+960290 | MS.gene92312:CDS |
| TAATGTATTCAAAAGTGACC+GGG | 0.606182 | 5.1:+958127 | MS.gene92312:CDS |
| CTGATGTTAGAAGGGAGACA+AGG | 0.607317 | 5.1:-959257 | None:intergenic |
| AGAAAACTCAACATTGAAGA+GGG | 0.609693 | 5.1:+960346 | MS.gene92312:CDS |
| ATAAATGCCTCAAACCAAGT+TGG | 0.611074 | 5.1:-962991 | None:intergenic |
| ATCAACAATATACCTTGACT+CGG | 0.617829 | 5.1:-959003 | None:intergenic |
| GTATGTGAGTTACTTGCTGG+TGG | 0.618042 | 5.1:+954299 | MS.gene92312:CDS |
| GGGATTCTTAAGAAGAACGA+TGG | 0.624518 | 5.1:+954080 | MS.gene92312:CDS |
| CCTTACTTGTCCGAGCAAAG+AGG | 0.625961 | 5.1:-956485 | None:intergenic |
| GACCTTCTTTACCCAAAGCG+AGG | 0.628740 | 5.1:-956435 | None:intergenic |
| ATGATAGCAAAGGAGGCCTG+TGG | 0.629204 | 5.1:+961610 | MS.gene92312:CDS |
| TGGGGTGGCTTACAAGATCA+CGG | 0.630966 | 5.1:-958154 | None:intergenic |
| CCGTCATCATCGATGACGAA+AGG | 0.631857 | 5.1:-954053 | None:intergenic |
| TCCGGTATTCCTGAAATCAA+GGG | 0.633331 | 5.1:+956135 | MS.gene92312:CDS |
| AGCACTAATCCAATAACAAG+TGG | 0.633552 | 5.1:-962397 | None:intergenic |
| ATCAAGCCAAGAACATGTGA+CGG | 0.634145 | 5.1:-963028 | None:intergenic |
| TTGTGTGATGATATATACAG+AGG | 0.634314 | 5.1:-956091 | None:intergenic |
| CAAGAAAGGGAACCGAGTCA+AGG | 0.635298 | 5.1:+958991 | MS.gene92312:CDS |
| TGATAGCAAAGGAGGCCTGT+GGG | 0.636416 | 5.1:+961611 | MS.gene92312:CDS |
| CAAGCACCAGTATGGACTAG+AGG | 0.639389 | 5.1:-956457 | None:intergenic |
| GGTGGAGGAGTCAACTAATG+TGG | 0.640885 | 5.1:+958538 | MS.gene92312:intron |
| GCTGCATTTAGAGCTCCAGT+TGG | 0.643756 | 5.1:+958338 | MS.gene92312:CDS |
| GATGCGGAATATGATAGCAA+AGG | 0.644021 | 5.1:+961600 | MS.gene92312:CDS |
| CCTTTCGTCATCGATGATGA+CGG | 0.644380 | 5.1:+954053 | MS.gene92312:CDS |
| GCGGAATATGATAGCAAAGG+AGG | 0.644443 | 5.1:+961603 | MS.gene92312:CDS |
| CAAAGCCTAAATATGAGATG+CGG | 0.646071 | 5.1:+961584 | MS.gene92312:CDS |
| TTGGAAGCATTGGTTCAGTG+GGG | 0.650300 | 5.1:+956407 | MS.gene92312:CDS |
| GCGATGGGGTGGTGTAAGAG+TGG | 0.651229 | 5.1:+958606 | MS.gene92312:CDS |
| CGATATACATCTAACATCAG+AGG | 0.653791 | 5.1:+962779 | MS.gene92312:CDS |
| CTGCAGAGCAACACACACAA+CGG | 0.660953 | 5.1:+962261 | MS.gene92312:CDS |
| TGTCTTGAAAAGGTAACTTG+TGG | 0.668583 | 5.1:+958296 | MS.gene92312:intron |
| GTTGATCCGATCATAATACC+GGG | 0.676981 | 5.1:-960283 | None:intergenic |
| AGTATCATCTAAATTCAAGG+TGG | 0.691464 | 5.1:+958102 | MS.gene92312:CDS |
| TTGTGGTGCGAACTGCGATG+GGG | 0.698177 | 5.1:+958592 | MS.gene92312:CDS |
| TCTGAAACCTTAACAACACG+AGG | 0.705920 | 5.1:-962225 | None:intergenic |
| TAATTCCCATACATTCCAGG+AGG | 0.734958 | 5.1:-959363 | None:intergenic |
| CATTGGAAGAGGTTACATCG+TGG | 0.744919 | 5.1:+958375 | MS.gene92312:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 953975 | 963227 | 953975 | ID=MS.gene92312 |
| chr5.1 | mRNA | 953975 | 963227 | 953975 | ID=MS.gene92312.t1;Parent=MS.gene92312 |
| chr5.1 | exon | 953975 | 954163 | 953975 | ID=MS.gene92312.t1.exon1;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 953975 | 954163 | 953975 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 954279 | 954354 | 954279 | ID=MS.gene92312.t1.exon2;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 954279 | 954354 | 954279 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 955947 | 956168 | 955947 | ID=MS.gene92312.t1.exon3;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 955947 | 956168 | 955947 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 956272 | 956318 | 956272 | ID=MS.gene92312.t1.exon4;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 956272 | 956318 | 956272 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 956403 | 956501 | 956403 | ID=MS.gene92312.t1.exon5;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 956403 | 956501 | 956403 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 958089 | 958163 | 958089 | ID=MS.gene92312.t1.exon6;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 958089 | 958163 | 958089 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 958308 | 958396 | 958308 | ID=MS.gene92312.t1.exon7;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 958308 | 958396 | 958308 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 958539 | 958679 | 958539 | ID=MS.gene92312.t1.exon8;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 958539 | 958679 | 958539 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 958769 | 958839 | 958769 | ID=MS.gene92312.t1.exon9;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 958769 | 958839 | 958769 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 958933 | 959012 | 958933 | ID=MS.gene92312.t1.exon10;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 958933 | 959012 | 958933 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 959243 | 959392 | 959243 | ID=MS.gene92312.t1.exon11;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 959243 | 959392 | 959243 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 959584 | 959643 | 959584 | ID=MS.gene92312.t1.exon12;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 959584 | 959643 | 959584 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 959727 | 959801 | 959727 | ID=MS.gene92312.t1.exon13;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 959727 | 959801 | 959727 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 960220 | 960371 | 960220 | ID=MS.gene92312.t1.exon14;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 960220 | 960371 | 960220 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 961309 | 961444 | 961309 | ID=MS.gene92312.t1.exon15;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 961309 | 961444 | 961309 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 961511 | 961642 | 961511 | ID=MS.gene92312.t1.exon16;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 961511 | 961642 | 961511 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 962213 | 962290 | 962213 | ID=MS.gene92312.t1.exon17;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 962213 | 962290 | 962213 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 962370 | 962425 | 962370 | ID=MS.gene92312.t1.exon18;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 962370 | 962425 | 962370 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 962559 | 962645 | 962559 | ID=MS.gene92312.t1.exon19;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 962559 | 962645 | 962559 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 962725 | 962881 | 962725 | ID=MS.gene92312.t1.exon20;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 962725 | 962881 | 962725 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 962974 | 963075 | 962974 | ID=MS.gene92312.t1.exon21;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 962974 | 963075 | 962974 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| chr5.1 | exon | 963168 | 963227 | 963168 | ID=MS.gene92312.t1.exon22;Parent=MS.gene92312.t1 |
| chr5.1 | CDS | 963168 | 963227 | 963168 | ID=cds.MS.gene92312.t1;Parent=MS.gene92312.t1 |
| Gene Sequence |
| Protein sequence |
