Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92343.t1 | RHN53256.1 | 93.8 | 418 | 22 | 3 | 1 | 415 | 64 | 480 | 8.90E-225 | 789.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92343.t1 | G7K0Z7 | 93.8 | 418 | 22 | 3 | 1 | 415 | 1 | 417 | 6.4e-225 | 789.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057020 | MS.gene92343 | 0.807511 | 4.88E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92343.t1 | MTR_5g005420 | 96.411 | 418 | 11 | 3 | 1 | 415 | 1 | 417 | 0.0 | 813 |
| MS.gene92343.t1 | MTR_3g110630 | 48.298 | 470 | 166 | 10 | 1 | 415 | 1 | 448 | 3.12e-133 | 390 |
| MS.gene92343.t1 | MTR_6g090060 | 43.084 | 441 | 196 | 13 | 1 | 413 | 1 | 414 | 4.49e-105 | 317 |
| MS.gene92343.t1 | MTR_8g009770 | 36.667 | 450 | 229 | 11 | 1 | 414 | 1 | 430 | 1.49e-84 | 265 |
| MS.gene92343.t1 | MTR_8g102270 | 43.370 | 362 | 157 | 9 | 66 | 413 | 27 | 354 | 8.59e-84 | 261 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92343.t1 | AT3G19680 | 50.000 | 490 | 164 | 14 | 1 | 415 | 1 | 484 | 5.92e-130 | 383 |
| MS.gene92343.t1 | AT1G50040 | 52.070 | 459 | 170 | 14 | 1 | 415 | 1 | 453 | 1.50e-124 | 369 |
| MS.gene92343.t1 | AT1G10020 | 45.435 | 471 | 183 | 11 | 1 | 413 | 1 | 455 | 1.18e-120 | 358 |
| MS.gene92343.t1 | AT4G29310 | 43.624 | 447 | 186 | 12 | 1 | 413 | 1 | 415 | 3.38e-113 | 338 |
| MS.gene92343.t1 | AT4G29310 | 44.340 | 318 | 138 | 9 | 1 | 286 | 1 | 311 | 1.91e-82 | 256 |
| MS.gene92343.t1 | AT5G17640 | 38.497 | 439 | 212 | 14 | 1 | 403 | 1 | 417 | 1.14e-80 | 255 |
Find 112 sgRNAs with CRISPR-Local
Find 135 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGTTAGAGATTTGTGATTT+AGG | 0.178390 | 5.1:-470100 | None:intergenic |
| GGTTAGAGATTTGTGATTTA+GGG | 0.232026 | 5.1:-470099 | None:intergenic |
| CCAAACGGAAGCTGGGATTT+AGG | 0.337728 | 5.1:+470838 | MS.gene92343:CDS |
| TCCAACGGAGTTTGAGTAAC+CGG | 0.343106 | 5.1:-470692 | None:intergenic |
| TCAAGACCCGGGTCTGGTTC+CGG | 0.366880 | 5.1:+470874 | MS.gene92343:CDS |
| CCCGGTTCAGTTTCCATCAA+TGG | 0.370037 | 5.1:+470474 | MS.gene92343:CDS |
| CTGCAACCGGCGAGTGTGAC+TGG | 0.377352 | 5.1:-470748 | None:intergenic |
| ACCGGTTGCGTGTGCTTCAA+TGG | 0.380208 | 5.1:+470540 | MS.gene92343:CDS |
| TGGGATTTAGGCTCCGGTTC+AGG | 0.382445 | 5.1:+470850 | MS.gene92343:CDS |
| TCCTTCCCCTGGTTCACAAC+GGG | 0.385398 | 5.1:+470576 | MS.gene92343:CDS |
| TTTCCGGTTTGACGGTGAAC+CGG | 0.390430 | 5.1:+470360 | MS.gene92343:CDS |
| TCCATTGATGGAAACTGAAC+CGG | 0.392616 | 5.1:-470475 | None:intergenic |
| AACCCGATGGTGATGGTACT+TGG | 0.396043 | 5.1:+470635 | MS.gene92343:CDS |
| AAAACCTGTGGACTGCATTC+CGG | 0.398056 | 5.1:-470379 | None:intergenic |
| ATACCGGTTCGACGTTCTTC+CGG | 0.400080 | 5.1:+470714 | MS.gene92343:CDS |
| TCAAACCGGAAAATAAATCT+TGG | 0.401676 | 5.1:-470349 | None:intergenic |
| CTTCCGTTTGGAGTGTTAAC+GGG | 0.405734 | 5.1:-470826 | None:intergenic |
| AGCTGCTATGGATTTGAGTA+TGG | 0.413553 | 5.1:+471050 | MS.gene92343:CDS |
| CCAACCGTTGTGAAAAGAAC+AGG | 0.425210 | 5.1:-470248 | None:intergenic |
| GCTTGAAGGATGAACTTTGC+CGG | 0.425992 | 5.1:-469954 | None:intergenic |
| TGTTGCTCTTGCAGCTGCTA+TGG | 0.432619 | 5.1:+471038 | MS.gene92343:CDS |
| AGCACACGCAACCGGTGAAC+CGG | 0.433904 | 5.1:-470533 | None:intergenic |
| CTGAATTTGCATGTGAAAAC+CGG | 0.437926 | 5.1:-470427 | None:intergenic |
| ACCATTGAAGCACACGCAAC+CGG | 0.440718 | 5.1:-470541 | None:intergenic |
| ACACCGTTCGTTCCTTCCCC+TGG | 0.442717 | 5.1:+470565 | MS.gene92343:CDS |
| GGAAACTGAACCGGGTTTGA+AGG | 0.444228 | 5.1:-470466 | None:intergenic |
| TTTACAATTGATGTAGCATC+AGG | 0.444386 | 5.1:+470796 | MS.gene92343:CDS |
| TTTAACAGTCCGAGTTGAAC+CGG | 0.444551 | 5.1:+470324 | MS.gene92343:CDS |
| CCTAAATCCCAGCTTCCGTT+TGG | 0.449770 | 5.1:-470838 | None:intergenic |
| GGAAGCTGGGATTTAGGCTC+CGG | 0.450272 | 5.1:+470844 | MS.gene92343:CDS |
| GCTTCCGTTTGGAGTGTTAA+CGG | 0.458009 | 5.1:-470827 | None:intergenic |
| GTGATGTCCGCGAGATTTGA+CGG | 0.461060 | 5.1:+470940 | MS.gene92343:CDS |
| TTAACACTCCAAACGGAAGC+TGG | 0.465898 | 5.1:+470830 | MS.gene92343:CDS |
| TTCACACCAACTTCCACCTC+CGG | 0.469096 | 5.1:-470982 | None:intergenic |
| CTGTGAACTGATACTGCAAC+CGG | 0.471720 | 5.1:-470761 | None:intergenic |
| ATCTGGACCGGAACCAGACC+CGG | 0.472927 | 5.1:-470881 | None:intergenic |
| CAGTAGCATGTGGAGCTTGA+AGG | 0.474576 | 5.1:-469968 | None:intergenic |
| CCCGGGTCTTGATCCTGAAC+CGG | 0.475777 | 5.1:-470863 | None:intergenic |
| TCATTCGTACGGATCTTAAT+CGG | 0.483307 | 5.1:+469887 | MS.gene92343:CDS |
| TTTCCATCAATGGATAGAAA+AGG | 0.487017 | 5.1:+470484 | MS.gene92343:CDS |
| TTACTGACCCGTTGTGAACC+AGG | 0.488538 | 5.1:-470583 | None:intergenic |
| ATTACGATACACGATTTATC+CGG | 0.490765 | 5.1:+470514 | MS.gene92343:CDS |
| ATTCCGGTTCACCGTCAAAC+CGG | 0.493752 | 5.1:-470363 | None:intergenic |
| CATGGGGTCGACTCGAAGCT+TGG | 0.495685 | 5.1:+470662 | MS.gene92343:CDS |
| CTCGAAGCTTGGCGTGAACC+CGG | 0.500118 | 5.1:+470673 | MS.gene92343:CDS |
| GTGACTGGATCAGCGGTGGC+CGG | 0.500258 | 5.1:-470733 | None:intergenic |
| TTCCAAGTACCATCACCATC+GGG | 0.502674 | 5.1:-470637 | None:intergenic |
| AGGATGAACTTTGCCGGAGA+AGG | 0.503747 | 5.1:-469948 | None:intergenic |
| ACTCAAACTCCGTTGGATAC+CGG | 0.505974 | 5.1:+470698 | MS.gene92343:CDS |
| AAAGTGTAGTAAACCGGAGG+TGG | 0.509798 | 5.1:+470969 | MS.gene92343:CDS |
| TTCCTTCCCCTGGTTCACAA+CGG | 0.514660 | 5.1:+470575 | MS.gene92343:CDS |
| TTGATAATTAACCAAGCACC+TGG | 0.518437 | 5.1:-470613 | None:intergenic |
| TCAGGATCAAGACCCGGGTC+TGG | 0.518778 | 5.1:+470868 | MS.gene92343:CDS |
| CAAACCGGAAAATAAATCTT+GGG | 0.524651 | 5.1:-470348 | None:intergenic |
| CGGAAAATAAATCTTGGGTC+CGG | 0.524889 | 5.1:-470343 | None:intergenic |
| CAAGGGAGAAGTAAAACAAC+CGG | 0.526470 | 5.1:+470408 | MS.gene92343:CDS |
| ACACGATTTATCCGGTTCAC+CGG | 0.530542 | 5.1:+470522 | MS.gene92343:CDS |
| TGGCCGGAAGAACGTCGAAC+CGG | 0.534116 | 5.1:-470717 | None:intergenic |
| CCATTGATGGAAACTGAACC+GGG | 0.538501 | 5.1:-470474 | None:intergenic |
| TCATCAAAACCATCCTTCTC+CGG | 0.538620 | 5.1:+469935 | MS.gene92343:CDS |
| GGAACTGTTGCGACGTGGCA+AGG | 0.541832 | 5.1:-470022 | None:intergenic |
| CCCGGTTACTCAAACTCCGT+TGG | 0.543060 | 5.1:+470691 | MS.gene92343:CDS |
| TGCAGTATCAGTTCACAGAA+TGG | 0.545387 | 5.1:+470766 | MS.gene92343:CDS |
| GAAACTGAACCGGGTTTGAA+GGG | 0.547385 | 5.1:-470465 | None:intergenic |
| TCCGGTTCAGGATCAAGACC+CGG | 0.549250 | 5.1:+470862 | MS.gene92343:CDS |
| GTAAATCAAACCCAGGTGCT+TGG | 0.549731 | 5.1:+470602 | MS.gene92343:CDS |
| GCAGTGTTGAAAACGCATGA+AGG | 0.556005 | 5.1:-470169 | None:intergenic |
| AAGGTAGCAGCGAGAGAGTG+AGG | 0.557770 | 5.1:-470070 | None:intergenic |
| AGTAAACCGGAGGTGGAAGT+TGG | 0.559317 | 5.1:+470976 | MS.gene92343:CDS |
| CCGGTTCAGGATCAAGACCC+GGG | 0.560244 | 5.1:+470863 | MS.gene92343:CDS |
| ACTCCCGTTAACACTCCAAA+CGG | 0.562154 | 5.1:+470823 | MS.gene92343:CDS |
| TGAACTTTGCCGGAGAAGGA+TGG | 0.563927 | 5.1:-469944 | None:intergenic |
| CCCTTGACTTGGAAAACCTG+TGG | 0.564292 | 5.1:-470391 | None:intergenic |
| TGGATCCGTGCTCATTCGTA+CGG | 0.564550 | 5.1:+469876 | MS.gene92343:CDS |
| CCAACGGAGTTTGAGTAACC+GGG | 0.565981 | 5.1:-470691 | None:intergenic |
| TTTCCAAGTACCATCACCAT+CGG | 0.566391 | 5.1:-470638 | None:intergenic |
| TACTGACCCGTTGTGAACCA+GGG | 0.567667 | 5.1:-470582 | None:intergenic |
| TCAACTAACGTTAGATCAAG+AGG | 0.569554 | 5.1:-470217 | None:intergenic |
| TAACACTCCAAACGGAAGCT+GGG | 0.572899 | 5.1:+470831 | MS.gene92343:CDS |
| TCTGGACCGGAACCAGACCC+GGG | 0.576297 | 5.1:-470880 | None:intergenic |
| TGATGGTACTTGGAAACCAT+GGG | 0.577535 | 5.1:+470645 | MS.gene92343:CDS |
| CATCAATGGATAGAAAAGGT+TGG | 0.582790 | 5.1:+470488 | MS.gene92343:CDS |
| TTTGATTTCGCAGTAGCATG+TGG | 0.586946 | 5.1:-469978 | None:intergenic |
| ATCTTGGGTCCGGTTCAACT+CGG | 0.588586 | 5.1:-470333 | None:intergenic |
| GTGATGGTACTTGGAAACCA+TGG | 0.592053 | 5.1:+470644 | MS.gene92343:CDS |
| ACCCGTTGTGAACCAGGGGA+AGG | 0.596861 | 5.1:-470577 | None:intergenic |
| ATTATCAAACCCGATGGTGA+TGG | 0.600303 | 5.1:+470628 | MS.gene92343:CDS |
| TTGTGATTTAGGGAAATCAA+AGG | 0.603406 | 5.1:-470089 | None:intergenic |
| TGGTTAATTATCAAACCCGA+TGG | 0.611258 | 5.1:+470622 | MS.gene92343:CDS |
| TGAACCGGAATGCAGTCCAC+AGG | 0.623479 | 5.1:+470375 | MS.gene92343:CDS |
| TACTGCGAAATCAAACTCAA+AGG | 0.623956 | 5.1:+469986 | MS.gene92343:CDS |
| AGAAATTACGAAAAGAGTTG+CGG | 0.624516 | 5.1:+471094 | MS.gene92343:CDS |
| CAAGCTTCGAGTCGACCCCA+TGG | 0.631720 | 5.1:-470661 | None:intergenic |
| AGGTAGCAGCGAGAGAGTGA+GGG | 0.638529 | 5.1:-470069 | None:intergenic |
| GGCGAGTGTGACTGGATCAG+CGG | 0.640369 | 5.1:-470740 | None:intergenic |
| GTTTCTGATTCTGATACTAG+AGG | 0.642324 | 5.1:-470043 | None:intergenic |
| GAGTGTGACTGGATCAGCGG+TGG | 0.643291 | 5.1:-470737 | None:intergenic |
| CTCACTCTCAACAACAACAA+CGG | 0.645230 | 5.1:+470277 | MS.gene92343:CDS |
| AACGTCGAACCGGTATCCAA+CGG | 0.651013 | 5.1:-470707 | None:intergenic |
| TTCAACACTGCAAAACTCGT+AGG | 0.651845 | 5.1:+470181 | MS.gene92343:CDS |
| AAGATCCGTACGAATGAGCA+CGG | 0.652835 | 5.1:-469881 | None:intergenic |
| CAACCGTTGTGAAAAGAACA+GGG | 0.658170 | 5.1:-470247 | None:intergenic |
| GCTGATCCAGTCACACTCGC+CGG | 0.659941 | 5.1:+470742 | MS.gene92343:CDS |
| TGATAATTAACCAAGCACCT+GGG | 0.663225 | 5.1:-470612 | None:intergenic |
| ACTGACCCGTTGTGAACCAG+GGG | 0.673424 | 5.1:-470581 | None:intergenic |
| GAACCAGGGGAAGGAACGAA+CGG | 0.673713 | 5.1:-470568 | None:intergenic |
| AGTATCAGTTCACAGAATGG+TGG | 0.683678 | 5.1:+470769 | MS.gene92343:CDS |
| CTAGAGGAACTGTTGCGACG+TGG | 0.686510 | 5.1:-470027 | None:intergenic |
| CGGGTCAGTAAATCAAACCC+AGG | 0.691115 | 5.1:+470595 | MS.gene92343:CDS |
| ACTGTTGCGACGTGGCAAGG+TGG | 0.702049 | 5.1:-470019 | None:intergenic |
| TGTGAAGCACGTGACATGCA+CGG | 0.711455 | 5.1:+470999 | MS.gene92343:CDS |
| GATGGTACTTGGAAACCATG+GGG | 0.759321 | 5.1:+470646 | MS.gene92343:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTGTGTTAGTTTTGAAAA+CGG | - | chr5.1:470149-470168 | None:intergenic | 20.0% |
| !! | TGAAAAAAAGTGTAGTAAAC+CGG | + | chr5.1:470963-470982 | MS.gene92343:CDS | 25.0% |
| AACAACAACGGAAAAAATAC+TGG | + | chr5.1:470289-470308 | MS.gene92343:CDS | 30.0% | |
| AGAAATTACGAAAAGAGTTG+CGG | + | chr5.1:471094-471113 | MS.gene92343:CDS | 30.0% | |
| AGGTTAGAGATTTGTGATTT+AGG | - | chr5.1:470103-470122 | None:intergenic | 30.0% | |
| ATTACGATACACGATTTATC+CGG | + | chr5.1:470514-470533 | MS.gene92343:CDS | 30.0% | |
| CAAACCGGAAAATAAATCTT+GGG | - | chr5.1:470351-470370 | None:intergenic | 30.0% | |
| GGTTAGAGATTTGTGATTTA+GGG | - | chr5.1:470102-470121 | None:intergenic | 30.0% | |
| TCAAACCGGAAAATAAATCT+TGG | - | chr5.1:470352-470371 | None:intergenic | 30.0% | |
| TGATTCTCCAATGAAAAATC+TGG | - | chr5.1:470901-470920 | None:intergenic | 30.0% | |
| TTGTGATTTAGGGAAATCAA+AGG | - | chr5.1:470092-470111 | None:intergenic | 30.0% | |
| TTTACAATTGATGTAGCATC+AGG | + | chr5.1:470796-470815 | MS.gene92343:CDS | 30.0% | |
| TTTCCATCAATGGATAGAAA+AGG | + | chr5.1:470484-470503 | MS.gene92343:CDS | 30.0% | |
| ! | GAGAATCAGTTTTTGTATAG+CGG | + | chr5.1:470913-470932 | MS.gene92343:CDS | 30.0% |
| ! | TTTTGATGAGAGGGTTTTTA+AGG | - | chr5.1:470123-470142 | None:intergenic | 30.0% |
| !! | AGATTTATTTTCCGGTTTGA+CGG | + | chr5.1:470352-470371 | MS.gene92343:CDS | 30.0% |
| !! | ATGATGGTGATTTTATTGCA+AGG | - | chr5.1:469916-469935 | None:intergenic | 30.0% |
| CATCAATGGATAGAAAAGGT+TGG | + | chr5.1:470488-470507 | MS.gene92343:CDS | 35.0% | |
| CTGAATTTGCATGTGAAAAC+CGG | - | chr5.1:470430-470449 | None:intergenic | 35.0% | |
| GTTTCTGATTCTGATACTAG+AGG | - | chr5.1:470046-470065 | None:intergenic | 35.0% | |
| TACTGCGAAATCAAACTCAA+AGG | + | chr5.1:469986-470005 | MS.gene92343:CDS | 35.0% | |
| TCAACTAACGTTAGATCAAG+AGG | - | chr5.1:470220-470239 | None:intergenic | 35.0% | |
| TCATTCGTACGGATCTTAAT+CGG | + | chr5.1:469887-469906 | MS.gene92343:CDS | 35.0% | |
| TGATAATTAACCAAGCACCT+GGG | - | chr5.1:470615-470634 | None:intergenic | 35.0% | |
| TGGTTAATTATCAAACCCGA+TGG | + | chr5.1:470622-470641 | MS.gene92343:CDS | 35.0% | |
| ! | AAAAAAGTGTAGTAAACCGG+AGG | + | chr5.1:470966-470985 | MS.gene92343:CDS | 35.0% |
| ! | CAACCTTTTCTATCCATTGA+TGG | - | chr5.1:470490-470509 | None:intergenic | 35.0% |
| ! | TTGATAATTAACCAAGCACC+TGG | - | chr5.1:470616-470635 | None:intergenic | 35.0% |
| !! | AAAACGGAGATTTTGATGAG+AGG | - | chr5.1:470133-470152 | None:intergenic | 35.0% |
| !! | AAACGGAGATTTTGATGAGA+GGG | - | chr5.1:470132-470151 | None:intergenic | 35.0% |
| !!! | AAGGATGGTTTTGATGATGA+TGG | - | chr5.1:469932-469951 | None:intergenic | 35.0% |
| AGACAAAAACCCTTCAAACC+CGG | + | chr5.1:470456-470475 | MS.gene92343:CDS | 40.0% | |
| AGCTGCTATGGATTTGAGTA+TGG | + | chr5.1:471050-471069 | MS.gene92343:CDS | 40.0% | |
| AGTATCAGTTCACAGAATGG+TGG | + | chr5.1:470769-470788 | MS.gene92343:CDS | 40.0% | |
| ATTATCAAACCCGATGGTGA+TGG | + | chr5.1:470628-470647 | MS.gene92343:CDS | 40.0% | |
| CAACCGTTGTGAAAAGAACA+GGG | - | chr5.1:470250-470269 | None:intergenic | 40.0% | |
| CAAGGGAGAAGTAAAACAAC+CGG | + | chr5.1:470408-470427 | MS.gene92343:CDS | 40.0% | |
| CGGAAAATAAATCTTGGGTC+CGG | - | chr5.1:470346-470365 | None:intergenic | 40.0% | |
| CTCACTCTCAACAACAACAA+CGG | + | chr5.1:470277-470296 | MS.gene92343:CDS | 40.0% | |
| CTCCAATGAAAAATCTGGAC+CGG | - | chr5.1:470896-470915 | None:intergenic | 40.0% | |
| TCATCAAAACCATCCTTCTC+CGG | + | chr5.1:469935-469954 | MS.gene92343:CDS | 40.0% | |
| TCCATTGATGGAAACTGAAC+CGG | - | chr5.1:470478-470497 | None:intergenic | 40.0% | |
| TGATGGTACTTGGAAACCAT+GGG | + | chr5.1:470645-470664 | MS.gene92343:CDS | 40.0% | |
| TGCAGTATCAGTTCACAGAA+TGG | + | chr5.1:470766-470785 | MS.gene92343:CDS | 40.0% | |
| TTCAACACTGCAAAACTCGT+AGG | + | chr5.1:470181-470200 | MS.gene92343:CDS | 40.0% | |
| TTTCCAAGTACCATCACCAT+CGG | - | chr5.1:470641-470660 | None:intergenic | 40.0% | |
| ! | GTTTTACTTCTCCCTTGACT+TGG | - | chr5.1:470405-470424 | None:intergenic | 40.0% |
| ! | TTCCGGTCCAGATTTTTCAT+TGG | + | chr5.1:470891-470910 | MS.gene92343:CDS | 40.0% |
| ! | TTTAACAGTCCGAGTTGAAC+CGG | + | chr5.1:470324-470343 | MS.gene92343:CDS | 40.0% |
| ! | TTTGATTTCGCAGTAGCATG+TGG | - | chr5.1:469981-470000 | None:intergenic | 40.0% |
| ! | TTTTTCACCGTCAAATCTCG+CGG | - | chr5.1:470950-470969 | None:intergenic | 40.0% |
| !! | CGGACCCAAGATTTATTTTC+CGG | + | chr5.1:470344-470363 | MS.gene92343:CDS | 40.0% |
| AAAGTGTAGTAAACCGGAGG+TGG | + | chr5.1:470969-470988 | MS.gene92343:CDS | 45.0% | |
| AAGATCCGTACGAATGAGCA+CGG | - | chr5.1:469884-469903 | None:intergenic | 45.0% | |
| ACACGATTTATCCGGTTCAC+CGG | + | chr5.1:470522-470541 | MS.gene92343:CDS | 45.0% | |
| ACTCAAACTCCGTTGGATAC+CGG | + | chr5.1:470698-470717 | MS.gene92343:CDS | 45.0% | |
| ACTCCCGTTAACACTCCAAA+CGG | + | chr5.1:470823-470842 | MS.gene92343:CDS | 45.0% | |
| CCAACCGTTGTGAAAAGAAC+AGG | - | chr5.1:470251-470270 | None:intergenic | 45.0% | |
| CCATTGATGGAAACTGAACC+GGG | - | chr5.1:470477-470496 | None:intergenic | 45.0% | |
| CTGTGAACTGATACTGCAAC+CGG | - | chr5.1:470764-470783 | None:intergenic | 45.0% | |
| GAAACTGAACCGGGTTTGAA+GGG | - | chr5.1:470468-470487 | None:intergenic | 45.0% | |
| GATGGTACTTGGAAACCATG+GGG | + | chr5.1:470646-470665 | MS.gene92343:CDS | 45.0% | |
| GCTTGAAGGATGAACTTTGC+CGG | - | chr5.1:469957-469976 | None:intergenic | 45.0% | |
| GTAAATCAAACCCAGGTGCT+TGG | + | chr5.1:470602-470621 | MS.gene92343:CDS | 45.0% | |
| GTGATGGTACTTGGAAACCA+TGG | + | chr5.1:470644-470663 | MS.gene92343:CDS | 45.0% | |
| TAACACTCCAAACGGAAGCT+GGG | + | chr5.1:470831-470850 | MS.gene92343:CDS | 45.0% | |
| TCCAACGGAGTTTGAGTAAC+CGG | - | chr5.1:470695-470714 | None:intergenic | 45.0% | |
| TTAACACTCCAAACGGAAGC+TGG | + | chr5.1:470830-470849 | MS.gene92343:CDS | 45.0% | |
| TTCCAAGTACCATCACCATC+GGG | - | chr5.1:470640-470659 | None:intergenic | 45.0% | |
| ! | AAAACCTGTGGACTGCATTC+CGG | - | chr5.1:470382-470401 | None:intergenic | 45.0% |
| ! | CCACAGGTTTTCCAAGTCAA+GGG | + | chr5.1:470391-470410 | MS.gene92343:CDS | 45.0% |
| ! | CCTGTTCTTTTCACAACGGT+TGG | + | chr5.1:470248-470267 | MS.gene92343:CDS | 45.0% |
| ! | CGACCCTGTTCTTTTCACAA+CGG | + | chr5.1:470244-470263 | MS.gene92343:CDS | 45.0% |
| ! | CTTCCGTTTGGAGTGTTAAC+GGG | - | chr5.1:470829-470848 | None:intergenic | 45.0% |
| ! | GCAGTGTTGAAAACGCATGA+AGG | - | chr5.1:470172-470191 | None:intergenic | 45.0% |
| ! | GCTTCCGTTTGGAGTGTTAA+CGG | - | chr5.1:470830-470849 | None:intergenic | 45.0% |
| ! | TCCACAGGTTTTCCAAGTCA+AGG | + | chr5.1:470390-470409 | MS.gene92343:CDS | 45.0% |
| AACGTCGAACCGGTATCCAA+CGG | - | chr5.1:470710-470729 | None:intergenic | 50.0% | |
| ACCATTGAAGCACACGCAAC+CGG | - | chr5.1:470544-470563 | None:intergenic | 50.0% | |
| AGGATGAACTTTGCCGGAGA+AGG | - | chr5.1:469951-469970 | None:intergenic | 50.0% | |
| AGTAAACCGGAGGTGGAAGT+TGG | + | chr5.1:470976-470995 | MS.gene92343:CDS | 50.0% | |
| ATCTTGGGTCCGGTTCAACT+CGG | - | chr5.1:470336-470355 | None:intergenic | 50.0% | |
| ATTCCGGTTCACCGTCAAAC+CGG | - | chr5.1:470366-470385 | None:intergenic | 50.0% | |
| CAGTAGCATGTGGAGCTTGA+AGG | - | chr5.1:469971-469990 | None:intergenic | 50.0% | |
| CCAAACGGAAGCTGGGATTT+AGG | + | chr5.1:470838-470857 | MS.gene92343:CDS | 50.0% | |
| CCAACGGAGTTTGAGTAACC+GGG | - | chr5.1:470694-470713 | None:intergenic | 50.0% | |
| CCCGGTTCAGTTTCCATCAA+TGG | + | chr5.1:470474-470493 | MS.gene92343:CDS | 50.0% | |
| CCTAAATCCCAGCTTCCGTT+TGG | - | chr5.1:470841-470860 | None:intergenic | 50.0% | |
| CGGGTCAGTAAATCAAACCC+AGG | + | chr5.1:470595-470614 | MS.gene92343:CDS | 50.0% | |
| GGAAACTGAACCGGGTTTGA+AGG | - | chr5.1:470469-470488 | None:intergenic | 50.0% | |
| GTGATGTCCGCGAGATTTGA+CGG | + | chr5.1:470940-470959 | MS.gene92343:CDS | 50.0% | |
| TACTGACCCGTTGTGAACCA+GGG | - | chr5.1:470585-470604 | None:intergenic | 50.0% | |
| TGAACTTTGCCGGAGAAGGA+TGG | - | chr5.1:469947-469966 | None:intergenic | 50.0% | |
| TGGATCCGTGCTCATTCGTA+CGG | + | chr5.1:469876-469895 | MS.gene92343:CDS | 50.0% | |
| TGTGAAGCACGTGACATGCA+CGG | + | chr5.1:470999-471018 | MS.gene92343:CDS | 50.0% | |
| TGTTGCTCTTGCAGCTGCTA+TGG | + | chr5.1:471038-471057 | MS.gene92343:CDS | 50.0% | |
| TTACTGACCCGTTGTGAACC+AGG | - | chr5.1:470586-470605 | None:intergenic | 50.0% | |
| TTCACACCAACTTCCACCTC+CGG | - | chr5.1:470985-471004 | None:intergenic | 50.0% | |
| TTCCTTCCCCTGGTTCACAA+CGG | + | chr5.1:470575-470594 | MS.gene92343:CDS | 50.0% | |
| ! | TTTCCGGTTTGACGGTGAAC+CGG | + | chr5.1:470360-470379 | MS.gene92343:CDS | 50.0% |
| !! | AACCCGATGGTGATGGTACT+TGG | + | chr5.1:470635-470654 | MS.gene92343:CDS | 50.0% |
| !! | ATACCGGTTCGACGTTCTTC+CGG | + | chr5.1:470714-470733 | MS.gene92343:CDS | 50.0% |
| !! | CCCTTGACTTGGAAAACCTG+TGG | - | chr5.1:470394-470413 | None:intergenic | 50.0% |
| AAGGTAGCAGCGAGAGAGTG+AGG | - | chr5.1:470073-470092 | None:intergenic | 55.0% | |
| ACCGGTTGCGTGTGCTTCAA+TGG | + | chr5.1:470540-470559 | MS.gene92343:CDS | 55.0% | |
| ACTGACCCGTTGTGAACCAG+GGG | - | chr5.1:470584-470603 | None:intergenic | 55.0% | |
| AGGTAGCAGCGAGAGAGTGA+GGG | - | chr5.1:470072-470091 | None:intergenic | 55.0% | |
| CCCGGTTACTCAAACTCCGT+TGG | + | chr5.1:470691-470710 | MS.gene92343:CDS | 55.0% | |
| CTAGAGGAACTGTTGCGACG+TGG | - | chr5.1:470030-470049 | None:intergenic | 55.0% | |
| GAACCAGGGGAAGGAACGAA+CGG | - | chr5.1:470571-470590 | None:intergenic | 55.0% | |
| GGAAGCTGGGATTTAGGCTC+CGG | + | chr5.1:470844-470863 | MS.gene92343:CDS | 55.0% | |
| TCCGGTTCAGGATCAAGACC+CGG | + | chr5.1:470862-470881 | MS.gene92343:CDS | 55.0% | |
| TCCTTCCCCTGGTTCACAAC+GGG | + | chr5.1:470576-470595 | MS.gene92343:CDS | 55.0% | |
| TGAACCGGAATGCAGTCCAC+AGG | + | chr5.1:470375-470394 | MS.gene92343:CDS | 55.0% | |
| TGGGATTTAGGCTCCGGTTC+AGG | + | chr5.1:470850-470869 | MS.gene92343:CDS | 55.0% | |
| ACACCGTTCGTTCCTTCCCC+TGG | + | chr5.1:470565-470584 | MS.gene92343:CDS | 60.0% | |
| ACCCGTTGTGAACCAGGGGA+AGG | - | chr5.1:470580-470599 | None:intergenic | 60.0% | |
| ACTGTTGCGACGTGGCAAGG+TGG | - | chr5.1:470022-470041 | None:intergenic | 60.0% | |
| AGCACACGCAACCGGTGAAC+CGG | - | chr5.1:470536-470555 | None:intergenic | 60.0% | |
| ATCTGGACCGGAACCAGACC+CGG | - | chr5.1:470884-470903 | None:intergenic | 60.0% | |
| CAAGCTTCGAGTCGACCCCA+TGG | - | chr5.1:470664-470683 | None:intergenic | 60.0% | |
| CCCGGGTCTTGATCCTGAAC+CGG | - | chr5.1:470866-470885 | None:intergenic | 60.0% | |
| CCGGTTCAGGATCAAGACCC+GGG | + | chr5.1:470863-470882 | MS.gene92343:CDS | 60.0% | |
| CTCGAAGCTTGGCGTGAACC+CGG | + | chr5.1:470673-470692 | MS.gene92343:CDS | 60.0% | |
| GAGTGTGACTGGATCAGCGG+TGG | - | chr5.1:470740-470759 | None:intergenic | 60.0% | |
| GCTGATCCAGTCACACTCGC+CGG | + | chr5.1:470742-470761 | MS.gene92343:CDS | 60.0% | |
| GGAACTGTTGCGACGTGGCA+AGG | - | chr5.1:470025-470044 | None:intergenic | 60.0% | |
| GGCGAGTGTGACTGGATCAG+CGG | - | chr5.1:470743-470762 | None:intergenic | 60.0% | |
| TCAGGATCAAGACCCGGGTC+TGG | + | chr5.1:470868-470887 | MS.gene92343:CDS | 60.0% | |
| TGGCCGGAAGAACGTCGAAC+CGG | - | chr5.1:470720-470739 | None:intergenic | 60.0% | |
| ! | TCAAGACCCGGGTCTGGTTC+CGG | + | chr5.1:470874-470893 | MS.gene92343:CDS | 60.0% |
| !! | CATGGGGTCGACTCGAAGCT+TGG | + | chr5.1:470662-470681 | MS.gene92343:CDS | 60.0% |
| CTGCAACCGGCGAGTGTGAC+TGG | - | chr5.1:470751-470770 | None:intergenic | 65.0% | |
| GTGACTGGATCAGCGGTGGC+CGG | - | chr5.1:470736-470755 | None:intergenic | 65.0% | |
| TCTGGACCGGAACCAGACCC+GGG | - | chr5.1:470883-470902 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 469875 | 471122 | 469875 | ID=MS.gene92343 |
| chr5.1 | mRNA | 469875 | 471122 | 469875 | ID=MS.gene92343.t1;Parent=MS.gene92343 |
| chr5.1 | exon | 469875 | 471122 | 469875 | ID=MS.gene92343.t1.exon1;Parent=MS.gene92343.t1 |
| chr5.1 | CDS | 469875 | 471122 | 469875 | ID=cds.MS.gene92343.t1;Parent=MS.gene92343.t1 |
| Gene Sequence |
| Protein sequence |
