Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92377.t1 | XP_013453288.1 | 94.8 | 1135 | 50 | 3 | 2 | 1128 | 55 | 1188 | 0.00E+00 | 2128.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92377.t1 | G5E8P0 | 27.6 | 355 | 237 | 7 | 769 | 1117 | 1428 | 1768 | 1.7e-21 | 106.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92377.t1 | A0A072UDZ5 | 94.8 | 1135 | 50 | 3 | 2 | 1128 | 55 | 1188 | 0.0e+00 | 2128.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055358 | MS.gene92377 | 0.806005 | 1.01E-49 | -1.69E-46 |
| MS.gene057469 | MS.gene92377 | 0.816429 | 5.56E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92377.t1 | MTR_5g004880 | 94.802 | 1135 | 50 | 3 | 2 | 1128 | 55 | 1188 | 0.0 | 2170 |
| MS.gene92377.t1 | MTR_5g004880 | 94.714 | 1135 | 50 | 4 | 2 | 1128 | 55 | 1187 | 0.0 | 2163 |
| MS.gene92377.t1 | MTR_7g093560 | 26.766 | 269 | 175 | 7 | 790 | 1050 | 477 | 731 | 3.21e-18 | 90.9 |
| MS.gene92377.t1 | MTR_3g101230 | 25.316 | 395 | 236 | 18 | 760 | 1123 | 618 | 984 | 3.70e-12 | 71.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92377.t1 | AT3G43610 | 42.943 | 1169 | 585 | 21 | 5 | 1118 | 55 | 1196 | 0.0 | 813 |
| MS.gene92377.t1 | AT3G43610 | 42.906 | 1170 | 585 | 22 | 5 | 1118 | 55 | 1197 | 0.0 | 808 |
| MS.gene92377.t1 | AT3G43610 | 42.906 | 1163 | 557 | 23 | 5 | 1118 | 55 | 1159 | 0.0 | 797 |
| MS.gene92377.t1 | AT3G53760 | 24.789 | 355 | 211 | 10 | 804 | 1123 | 401 | 734 | 1.95e-19 | 94.7 |
| MS.gene92377.t1 | AT5G06680 | 25.651 | 269 | 178 | 6 | 790 | 1050 | 483 | 737 | 1.97e-18 | 91.7 |
| MS.gene92377.t1 | AT3G53760 | 25.000 | 300 | 185 | 8 | 851 | 1123 | 420 | 706 | 4.32e-18 | 90.5 |
| MS.gene92377.t1 | AT3G53760 | 25.362 | 276 | 164 | 6 | 804 | 1048 | 401 | 665 | 4.05e-16 | 84.0 |
Find 213 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCATCAAAACCATATT+TGG | 0.106834 | 5.1:+150816 | None:intergenic |
| TCAAGTAGGCCTTGAATTTC+TGG | 0.126180 | 5.1:+149159 | None:intergenic |
| CTGTTAAAACATATTGTTTA+TGG | 0.133412 | 5.1:+150779 | None:intergenic |
| ACTTGATATCATTCCCTTAT+TGG | 0.140448 | 5.1:+151422 | None:intergenic |
| GAACCTAGGCATGTGAATTT+TGG | 0.157976 | 5.1:-145129 | MS.gene92377:CDS |
| TTGCTCCTCAGAGCTGTTTA+AGG | 0.160336 | 5.1:+151638 | None:intergenic |
| TGCAATGTGCACTTGATTTC+CGG | 0.193614 | 5.1:-145679 | MS.gene92377:CDS |
| TCTCAGGGGATCTAATAATT+TGG | 0.197182 | 5.1:-151733 | MS.gene92377:intron |
| TTCAGCATTTAGACCCTTAT+TGG | 0.231770 | 5.1:+148060 | None:intergenic |
| ACATGAAATATGTGATAAAA+TGG | 0.256132 | 5.1:-151472 | MS.gene92377:CDS |
| ATTTGTTCATCTTGTCTCTT+TGG | 0.256357 | 5.1:-149334 | MS.gene92377:CDS |
| CGAGATGGAGTTCCCATTCC+TGG | 0.258609 | 5.1:-152871 | MS.gene92377:CDS |
| AATAATGATTATGGAGAAAT+TGG | 0.260319 | 5.1:-150871 | MS.gene92377:CDS |
| TTCTTTCGATTTCTTAGGAC+TGG | 0.266795 | 5.1:-148859 | MS.gene92377:CDS |
| TGATGTGTGGTGCTCATTAA+AGG | 0.279849 | 5.1:-148724 | MS.gene92377:intron |
| TAACAGCAACGCGACATAAC+TGG | 0.285184 | 5.1:+151217 | None:intergenic |
| TCTTCTGTTGGAGAGATAAT+AGG | 0.285491 | 5.1:+151944 | None:intergenic |
| GGTAATCAGAATAATGATTA+TGG | 0.292151 | 5.1:-150880 | MS.gene92377:CDS |
| ACGTCCCATCTGCAAGTATC+AGG | 0.297658 | 5.1:-153002 | MS.gene92377:CDS |
| CACATCAGTCAATGAAAATA+AGG | 0.300804 | 5.1:+148740 | None:intergenic |
| CAAAGATACTATAGATAATA+TGG | 0.301667 | 5.1:-152668 | MS.gene92377:CDS |
| CTTGCTCACAAGAAGACTTC+TGG | 0.303104 | 5.1:+149127 | None:intergenic |
| TATGGCACATATAACCAATA+AGG | 0.304666 | 5.1:-148074 | MS.gene92377:CDS |
| GGACCCTTGTAAGGTTTATA+TGG | 0.312505 | 5.1:-150974 | MS.gene92377:CDS |
| GTTCGTTCTTTCGATTTCTT+AGG | 0.315604 | 5.1:-148864 | MS.gene92377:CDS |
| TTTGATGAAGTCCTCCAATA+AGG | 0.317174 | 5.1:-151436 | MS.gene92377:CDS |
| GAGCAGCTGGGGAAGACTGC+TGG | 0.329494 | 5.1:-150743 | MS.gene92377:CDS |
| AAGAAGAAAAGAAGGGAGAT+AGG | 0.351878 | 5.1:+153784 | None:intergenic |
| TCTTCATTCCCTTCAGCATA+AGG | 0.366390 | 5.1:-147671 | MS.gene92377:intron |
| ATACATCTGGTGGGAGCAGC+TGG | 0.366570 | 5.1:-150756 | MS.gene92377:CDS |
| GCTGCAAAGTAGATACAAAA+TGG | 0.368889 | 5.1:+147737 | None:intergenic |
| GAAGCCGGCGTATTATTAAC+AGG | 0.369704 | 5.1:+151156 | None:intergenic |
| GATAGCTGTGCATCTACTTA+TGG | 0.373668 | 5.1:-150901 | MS.gene92377:CDS |
| AAAAGAAGGGAGATAGGTTA+TGG | 0.375455 | 5.1:+153790 | None:intergenic |
| TTGGTTATGAATGCAATGTT+AGG | 0.377620 | 5.1:-153837 | MS.gene92377:CDS |
| GATAGCGATGATGGATGATT+TGG | 0.382179 | 5.1:+153812 | None:intergenic |
| TTCCGGTCTTGTCTTACAAT+AGG | 0.387539 | 5.1:-145662 | MS.gene92377:CDS |
| TGGATTTCTCAAGGACTCAT+TGG | 0.388297 | 5.1:-152851 | MS.gene92377:CDS |
| ACATAACTGGGAATATTTCA+TGG | 0.388445 | 5.1:+151230 | None:intergenic |
| GGAATCCAGTTTGGTTCGTT+TGG | 0.391202 | 5.1:-153856 | MS.gene92377:CDS |
| AACATTGGGTTCATACTAAA+GGG | 0.392562 | 5.1:+151072 | None:intergenic |
| GACTCTTCAGGAATCCAGTT+TGG | 0.398484 | 5.1:-153865 | MS.gene92377:intron |
| TAGATACAAAATGGCTGATC+TGG | 0.400262 | 5.1:+147746 | None:intergenic |
| CAAGAGAAAGCTACTATAGA+AGG | 0.400425 | 5.1:-152639 | MS.gene92377:CDS |
| ATTGTGGGTTTATTAGATCT+TGG | 0.402296 | 5.1:-153125 | MS.gene92377:CDS |
| GAAGCATCAAAACCATATTT+GGG | 0.404273 | 5.1:+150817 | None:intergenic |
| GTTGAAACAATCAAGAGGTT+TGG | 0.404588 | 5.1:+153503 | None:intergenic |
| GGGAATATTTCATGGATTGC+AGG | 0.408006 | 5.1:+151238 | None:intergenic |
| ACACCACTTTCCTTCATCTC+TGG | 0.408695 | 5.1:-153752 | MS.gene92377:CDS |
| TACTGTAGAGGACCCTTGTA+AGG | 0.417624 | 5.1:-150983 | MS.gene92377:CDS |
| AAACATTTCTAGTCAACATT+GGG | 0.419183 | 5.1:+151058 | None:intergenic |
| CATAACCAAACGAACCAAAC+TGG | 0.419935 | 5.1:+153851 | None:intergenic |
| CTTGAGTACCACGAATTCTC+AGG | 0.421661 | 5.1:+151378 | None:intergenic |
| TGAGAGAAGCGTGGATAGTG+TGG | 0.422341 | 5.1:+153544 | None:intergenic |
| AAACAGCTCTGAGGAGCAAT+TGG | 0.423495 | 5.1:-151634 | MS.gene92377:CDS |
| TTGGTTGATGAACCCAAATA+TGG | 0.426072 | 5.1:-150829 | MS.gene92377:CDS |
| TCATTATCAAAAGAAGAAAC+TGG | 0.431370 | 5.1:+152013 | None:intergenic |
| TAAACTCCTGGTAGGGATCA+TGG | 0.431400 | 5.1:+153085 | None:intergenic |
| CTGATGACTTTCTACCCTGC+TGG | 0.432241 | 5.1:-152741 | MS.gene92377:CDS |
| AGCAGCTGGGGAAGACTGCT+GGG | 0.434417 | 5.1:-150742 | MS.gene92377:CDS |
| GTCTTACAATAGGAGCTTGT+CGG | 0.435370 | 5.1:-145652 | MS.gene92377:CDS |
| GAATCACACCAGCCTGGGGC+AGG | 0.436578 | 5.1:-148040 | MS.gene92377:CDS |
| TCTTACAATAGGAGCTTGTC+GGG | 0.437681 | 5.1:-145651 | MS.gene92377:CDS |
| CAACATTGGGTTCATACTAA+AGG | 0.437824 | 5.1:+151071 | None:intergenic |
| AATTGACAAGTGCTTAATAC+AGG | 0.440713 | 5.1:-150638 | MS.gene92377:CDS |
| GGGATGATAAGAAGAAAAGA+AGG | 0.441760 | 5.1:+153776 | None:intergenic |
| CCAGCTTTAACATGCGACTT+AGG | 0.442294 | 5.1:+153036 | None:intergenic |
| TTGGTTCCACTTGTTAGAGC+TGG | 0.445940 | 5.1:-152832 | MS.gene92377:CDS |
| TAGGTTATGGATAGCGATGA+TGG | 0.448424 | 5.1:+153803 | None:intergenic |
| GGCTGGCCTTGCCCAACAGC+AGG | 0.455203 | 5.1:-151594 | MS.gene92377:CDS |
| TAACTTCTAAGCTGCTCAAA+AGG | 0.456111 | 5.1:+152596 | None:intergenic |
| CTGTGCATTGATGTTGCTGC+TGG | 0.456329 | 5.1:-152775 | MS.gene92377:CDS |
| CTCAAAATCCTGAGAATTCG+TGG | 0.456694 | 5.1:-151386 | MS.gene92377:CDS |
| CAAGCCTTTGCTGTTGCCGT+TGG | 0.462562 | 5.1:-153597 | MS.gene92377:CDS |
| AATGCTGAATCACACCAGCC+TGG | 0.462675 | 5.1:-148046 | MS.gene92377:CDS |
| ACAGTAGAAAAGTTGAAGTA+AGG | 0.466027 | 5.1:+151000 | None:intergenic |
| GCTTGAAAAGCCGCTCCAGC+AGG | 0.466507 | 5.1:+152726 | None:intergenic |
| TTGATGAAGTCCTCCAATAA+GGG | 0.467454 | 5.1:-151435 | MS.gene92377:CDS |
| TTGGAGTCTGATCAGCTTAG+TGG | 0.470144 | 5.1:-151615 | MS.gene92377:CDS |
| CAGTGGAAGCAATGGATTGA+AGG | 0.473000 | 5.1:+153694 | None:intergenic |
| ATGCTGAATCACACCAGCCT+GGG | 0.475580 | 5.1:-148045 | MS.gene92377:CDS |
| ATTATTCAAATGTCAACAAT+GGG | 0.479031 | 5.1:-145068 | MS.gene92377:CDS |
| ATGGCACATATAACCAATAA+GGG | 0.481017 | 5.1:-148073 | MS.gene92377:CDS |
| GGGATCTAATAATTTGGAAT+CGG | 0.481778 | 5.1:-151727 | MS.gene92377:CDS |
| ATTTCATGTGAATCACTGCC+TGG | 0.482261 | 5.1:+151486 | None:intergenic |
| AAAACATTTCTAGTCAACAT+TGG | 0.484135 | 5.1:+151057 | None:intergenic |
| ATCTACTTTGCAGCAGTATG+TGG | 0.484679 | 5.1:-147728 | MS.gene92377:CDS |
| GGCTTGATTAACAAGAGTAC+AGG | 0.484679 | 5.1:+153614 | None:intergenic |
| TCCTTGAGAAATCCAGGAAT+GGG | 0.485830 | 5.1:+152859 | None:intergenic |
| CAATCATGTGAACCGTATTG+TGG | 0.486105 | 5.1:-153141 | MS.gene92377:CDS |
| TGATATCATTCCCTTATTGG+AGG | 0.488899 | 5.1:+151425 | None:intergenic |
| CGTTATTGCTAAAGCTACTT+CGG | 0.489440 | 5.1:-153352 | MS.gene92377:CDS |
| TCTTTCGATTTCTTAGGACT+GGG | 0.491161 | 5.1:-148858 | MS.gene92377:CDS |
| GTGCTTAATACAGGAAATCA+TGG | 0.491229 | 5.1:-150629 | MS.gene92377:CDS |
| AATGAGTCCTTGAGAAATCC+AGG | 0.492551 | 5.1:+152853 | None:intergenic |
| TGTTGTCCTGCTGTTGGGCA+AGG | 0.494012 | 5.1:+151588 | None:intergenic |
| GACTGGGTTACCATGTGGAT+TGG | 0.495862 | 5.1:-148842 | MS.gene92377:CDS |
| AACAGCAACGCGACATAACT+GGG | 0.497467 | 5.1:+151218 | None:intergenic |
| GAATTTGCTGACTTCTACAG+AGG | 0.500296 | 5.1:-153330 | MS.gene92377:CDS |
| CCTCTTTCAGCATCTGCTAT+CGG | 0.500585 | 5.1:-149054 | MS.gene92377:intron |
| CATGCAGGTGAAAGATATGA+TGG | 0.501098 | 5.1:-146612 | MS.gene92377:intron |
| TAGCTTTAGCAATAACGTCT+TGG | 0.501657 | 5.1:+153358 | None:intergenic |
| GAGAGACTTCCAGAAATTCA+AGG | 0.502668 | 5.1:-149168 | MS.gene92377:CDS |
| TCCCATTCCTGGATTTCTCA+AGG | 0.503476 | 5.1:-152860 | MS.gene92377:CDS |
| CTTAGAAGTTAGATATCAGC+AGG | 0.504295 | 5.1:-152584 | MS.gene92377:intron |
| TAAGTAGATGCACAGCTATC+CGG | 0.504455 | 5.1:+150904 | None:intergenic |
| GGCTTCAAACCTTATGCTGA+AGG | 0.505421 | 5.1:+147662 | None:intergenic |
| GAGATGAAGGAAAGTGGTGT+TGG | 0.507244 | 5.1:+153755 | None:intergenic |
| AATCATGTGAACCGTATTGT+GGG | 0.507781 | 5.1:-153140 | MS.gene92377:CDS |
| ACTAATTATCAATGTGCTTG+AGG | 0.508863 | 5.1:-149429 | MS.gene92377:CDS |
| CCTAAGTCGCATGTTAAAGC+TGG | 0.512283 | 5.1:-153036 | MS.gene92377:CDS |
| GAAACAATCAAGAGGTTTGG+AGG | 0.512842 | 5.1:+153506 | None:intergenic |
| GTCTGATGAAACAAAGGCAG+TGG | 0.518745 | 5.1:-145723 | MS.gene92377:CDS |
| CACAATTATCACACGTGTCA+TGG | 0.518950 | 5.1:-147702 | MS.gene92377:CDS |
| TTGTCCATATAAACCTTACA+AGG | 0.519142 | 5.1:+150970 | None:intergenic |
| GGAAGACGAGATGTCTCTGC+TGG | 0.521174 | 5.1:-151691 | MS.gene92377:CDS |
| TATCACACGTGTCATGGTGC+AGG | 0.521265 | 5.1:-147696 | MS.gene92377:CDS |
| TTGAATTTCTGGAAGTCTCT+CGG | 0.521336 | 5.1:+149170 | None:intergenic |
| TCCTGTCATCATGAAAATCC+AGG | 0.523728 | 5.1:-151504 | MS.gene92377:CDS |
| AGCAAGACACTAATAAGAAT+AGG | 0.532277 | 5.1:-149110 | MS.gene92377:CDS |
| AACAGGTTGGTCCTCACTCA+AGG | 0.534971 | 5.1:+151173 | None:intergenic |
| ATTGGCTGTGGTAATGAAGA+TGG | 0.535024 | 5.1:-150853 | MS.gene92377:CDS |
| TATTATTCAAATGTCAACAA+TGG | 0.536777 | 5.1:-145069 | MS.gene92377:CDS |
| AAGGAAAACGAGAGAAGCAG+TGG | 0.536915 | 5.1:+153677 | None:intergenic |
| GTATATGTAACCTACAAAAG+TGG | 0.537483 | 5.1:-153398 | MS.gene92377:CDS |
| TAGGTTACATATACTGGCAA+GGG | 0.538830 | 5.1:+153407 | None:intergenic |
| GTAGGTTACATATACTGGCA+AGG | 0.540278 | 5.1:+153406 | None:intergenic |
| TGATGCTTCACTGGATGTGG+TGG | 0.541227 | 5.1:-150803 | MS.gene92377:CDS |
| GATCTAATAAACCCACAATA+CGG | 0.541700 | 5.1:+153129 | None:intergenic |
| CCGATAGCAGATGCTGAAAG+AGG | 0.543282 | 5.1:+149054 | None:intergenic |
| TCAACAATAAACTCCTGGTA+GGG | 0.545809 | 5.1:+153078 | None:intergenic |
| GATATTTGAGAAAGAGTGAG+TGG | 0.546501 | 5.1:+153716 | None:intergenic |
| GTCCTTGAGAAATCCAGGAA+TGG | 0.547420 | 5.1:+152858 | None:intergenic |
| AGGTTGTTTGTGTACATGAA+AGG | 0.550535 | 5.1:-149090 | MS.gene92377:CDS |
| ATACTAAAGGGATTAATGCT+AGG | 0.551971 | 5.1:+151084 | None:intergenic |
| TCTTAATGTCAGTTGCGAGA+TGG | 0.552190 | 5.1:-152886 | MS.gene92377:intron |
| TACATCTGGTGGGAGCAGCT+GGG | 0.552361 | 5.1:-150755 | MS.gene92377:CDS |
| TTCTACAATCAATATATCCC+AGG | 0.552523 | 5.1:-145609 | MS.gene92377:intron |
| TAAGATGCCCTGCCCCAGGC+TGG | 0.554845 | 5.1:+148032 | None:intergenic |
| ATATTAAGATGCCCTGCCCC+AGG | 0.556018 | 5.1:+148028 | None:intergenic |
| GAGAGAAGCAGTGGAAGCAA+TGG | 0.557632 | 5.1:+153686 | None:intergenic |
| ATTTGAGAAAGAGTGAGTGG+TGG | 0.559427 | 5.1:+153719 | None:intergenic |
| AGTCTGATCAGCTTAGTGGC+TGG | 0.559492 | 5.1:-151611 | MS.gene92377:CDS |
| TTGGCTGTGGTAATGAAGAT+GGG | 0.563722 | 5.1:-150852 | MS.gene92377:CDS |
| AGATGAAGGAAAGTGGTGTT+GGG | 0.565163 | 5.1:+153756 | None:intergenic |
| CTGTGGTAATGAAGATGGGT+TGG | 0.566586 | 5.1:-150848 | MS.gene92377:CDS |
| ACATCTGGTGGGAGCAGCTG+GGG | 0.568808 | 5.1:-150754 | MS.gene92377:CDS |
| AAGCACGATTCCAGAGATGA+AGG | 0.574962 | 5.1:+153742 | None:intergenic |
| TGTTGCCGTTGGAAATGTCT+TGG | 0.575558 | 5.1:-153586 | MS.gene92377:CDS |
| TTCAACAATAAACTCCTGGT+AGG | 0.577628 | 5.1:+153077 | None:intergenic |
| GTATCTTTGTTGAAAGTCAG+TGG | 0.578801 | 5.1:+152682 | None:intergenic |
| CCGGCGTATTATTAACAGGT+TGG | 0.579081 | 5.1:+151160 | None:intergenic |
| GCCGTTGGAAATGTCTTGGA+AGG | 0.581630 | 5.1:-153582 | MS.gene92377:CDS |
| TGTGTTTGTACAGATTGAAT+CGG | 0.582351 | 5.1:+150939 | None:intergenic |
| GATCAACGAAGTGACGGAGA+AGG | 0.582631 | 5.1:+153658 | None:intergenic |
| TGCTAGGTAGATTACACTGA+TGG | 0.582733 | 5.1:+151100 | None:intergenic |
| GTTCGTCTTCTGACATGAGC+TGG | 0.582946 | 5.1:+151966 | None:intergenic |
| TCTCTGCTGGAAGATATGTA+TGG | 0.583056 | 5.1:-151678 | MS.gene92377:CDS |
| TATATGTAACCTACAAAAGT+GGG | 0.583341 | 5.1:-153397 | MS.gene92377:CDS |
| CGTCCCATCTGCAAGTATCA+GGG | 0.583813 | 5.1:-153001 | MS.gene92377:intron |
| CTCCTATTGTAAGACAAGAC+CGG | 0.583862 | 5.1:+145660 | None:intergenic |
| GACTTTCTACCCTGCTGGAG+CGG | 0.584490 | 5.1:-152736 | MS.gene92377:CDS |
| GCACAATCTGCTGTTTGTTG+AGG | 0.586706 | 5.1:+151033 | None:intergenic |
| AAACACATATTCATTTCCAC+CGG | 0.587649 | 5.1:-150923 | MS.gene92377:CDS |
| GGATGATAAGAAGAAAAGAA+GGG | 0.587713 | 5.1:+153777 | None:intergenic |
| ATGTCAACAATGGGATGATG+AGG | 0.587896 | 5.1:-145059 | MS.gene92377:CDS |
| AACAAGAGTACAGGGAGGGA+GGG | 0.589418 | 5.1:+153623 | None:intergenic |
| GCTTCAAACCTTATGCTGAA+GGG | 0.590254 | 5.1:+147663 | None:intergenic |
| TTGCTGACTTCTACAGAGGA+GGG | 0.593010 | 5.1:-153326 | MS.gene92377:CDS |
| GAAGAAACTGGAGCATGCAT+AGG | 0.594407 | 5.1:+152025 | None:intergenic |
| AATCACACCAGCCTGGGGCA+GGG | 0.596002 | 5.1:-148039 | MS.gene92377:CDS |
| CATTGACAGTCATTCAGCAA+TGG | 0.597321 | 5.1:-151325 | MS.gene92377:CDS |
| TGAAATCCATGATCCCTACC+AGG | 0.597660 | 5.1:-153091 | MS.gene92377:CDS |
| TAACAAGAGTACAGGGAGGG+AGG | 0.597701 | 5.1:+153622 | None:intergenic |
| TTTGCTGACTTCTACAGAGG+AGG | 0.598072 | 5.1:-153327 | MS.gene92377:CDS |
| TGCTGACCAGCTCTAACAAG+TGG | 0.601124 | 5.1:+152826 | None:intergenic |
| ATTTCCAACGGCAACAGCAA+AGG | 0.602720 | 5.1:+153593 | None:intergenic |
| GGAATCGGATGTCTCAAGTA+CGG | 0.604609 | 5.1:-151712 | MS.gene92377:CDS |
| TTGTCAATTATAATATCAAG+TGG | 0.604760 | 5.1:+150652 | None:intergenic |
| AGCCCAAAATTCACATGCCT+AGG | 0.605045 | 5.1:+145126 | None:intergenic |
| ATTCCAGAGATGAAGGAAAG+TGG | 0.605425 | 5.1:+153749 | None:intergenic |
| CTTAGGACTGGGTTACCATG+TGG | 0.605914 | 5.1:-148847 | MS.gene92377:CDS |
| GTGGGGACTCTAGACAAACT+AGG | 0.606813 | 5.1:-151989 | MS.gene92377:CDS |
| TGAAATGATCAACGAAGTGA+CGG | 0.608813 | 5.1:+153652 | None:intergenic |
| GTTACCCTGATACTTGCAGA+TGG | 0.613096 | 5.1:+152997 | None:intergenic |
| TTAATATATTGATGAAGATG+AGG | 0.613751 | 5.1:-148012 | MS.gene92377:intron |
| TCTGGATTGACAGTTCAAGT+AGG | 0.618169 | 5.1:+149145 | None:intergenic |
| ACAGTGTTGAAACAATCAAG+AGG | 0.621578 | 5.1:+153498 | None:intergenic |
| TCTGCTATGTCAAGGAACCT+AGG | 0.621862 | 5.1:-145143 | MS.gene92377:CDS |
| ACCTTCCAAGACATTTCCAA+CGG | 0.622034 | 5.1:+153581 | None:intergenic |
| TTTGTGTACATGAAAGGACA+TGG | 0.624900 | 5.1:-149084 | MS.gene92377:CDS |
| CTTGAAAAGCCGCTCCAGCA+GGG | 0.624998 | 5.1:+152727 | None:intergenic |
| TCTGATGAAACAAAGGCAGT+GGG | 0.626342 | 5.1:-145722 | MS.gene92377:CDS |
| TGTTAGTGATTCTTTGAGTG+TGG | 0.628800 | 5.1:-151199 | MS.gene92377:CDS |
| GATTATGGAGAAATTGGCTG+TGG | 0.635510 | 5.1:-150865 | MS.gene92377:CDS |
| TACAGAGTGGCCAATCCACA+TGG | 0.637678 | 5.1:+148832 | None:intergenic |
| AATTATCAATGTGCTTGAGG+AGG | 0.642244 | 5.1:-149426 | MS.gene92377:CDS |
| GCTTGATTAACAAGAGTACA+GGG | 0.645927 | 5.1:+153615 | None:intergenic |
| TTACCCTGATACTTGCAGAT+GGG | 0.651039 | 5.1:+152998 | None:intergenic |
| ATTGCACGTCTGCTATGTCA+AGG | 0.656079 | 5.1:-145151 | MS.gene92377:CDS |
| GTCTGAGAATGAGAGAAGCG+TGG | 0.661132 | 5.1:+153535 | None:intergenic |
| GTAGATGCACAGCTATCCGG+TGG | 0.668645 | 5.1:+150907 | None:intergenic |
| TGCTGAATCACACCAGCCTG+GGG | 0.674390 | 5.1:-148044 | MS.gene92377:CDS |
| TTCATCCTTAAACAGCTCTG+AGG | 0.675574 | 5.1:-151643 | MS.gene92377:CDS |
| GATTAACAAGAGTACAGGGA+GGG | 0.678234 | 5.1:+153619 | None:intergenic |
| TTGATTGTGATGCTACTCAA+AGG | 0.694455 | 5.1:-150702 | MS.gene92377:CDS |
| CCAACCTGTTAATAATACGC+CGG | 0.697464 | 5.1:-151160 | MS.gene92377:CDS |
| GAGTGTGGAAACCTTGAGTG+AGG | 0.699788 | 5.1:-151184 | MS.gene92377:CDS |
| CTTACAATAGGAGCTTGTCG+GGG | 0.705265 | 5.1:-145650 | MS.gene92377:CDS |
| TGTCCATATAAACCTTACAA+GGG | 0.706395 | 5.1:+150971 | None:intergenic |
| GGTGTCAAAATAATACAGAG+TGG | 0.715615 | 5.1:+148819 | None:intergenic |
| AAATTCAGTATTGAACAGAG+AGG | 0.745412 | 5.1:-151354 | MS.gene92377:CDS |
| TGATTAACAAGAGTACAGGG+AGG | 0.760574 | 5.1:+153618 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 145044 | 154239 | 145044 | ID=MS.gene92377 |
| chr5.1 | mRNA | 145044 | 154239 | 145044 | ID=MS.gene92377.t1;Parent=MS.gene92377 |
| chr5.1 | exon | 154237 | 154239 | 154237 | ID=MS.gene92377.t1.exon1;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 154237 | 154239 | 154237 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 153293 | 153877 | 153293 | ID=MS.gene92377.t1.exon2;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 153293 | 153877 | 153293 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 153002 | 153208 | 153002 | ID=MS.gene92377.t1.exon3;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 153002 | 153208 | 153002 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 152585 | 152896 | 152585 | ID=MS.gene92377.t1.exon4;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 152585 | 152896 | 152585 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 151926 | 152050 | 151926 | ID=MS.gene92377.t1.exon5;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 151926 | 152050 | 151926 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 150625 | 151749 | 150625 | ID=MS.gene92377.t1.exon6;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 150625 | 151749 | 150625 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 149328 | 149469 | 149328 | ID=MS.gene92377.t1.exon7;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 149328 | 149469 | 149328 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 149055 | 149214 | 149055 | ID=MS.gene92377.t1.exon8;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 149055 | 149214 | 149055 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 148725 | 148888 | 148725 | ID=MS.gene92377.t1.exon9;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 148725 | 148888 | 148725 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 148013 | 148098 | 148013 | ID=MS.gene92377.t1.exon10;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 148013 | 148098 | 148013 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 147672 | 147771 | 147672 | ID=MS.gene92377.t1.exon11;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 147672 | 147771 | 147672 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 146566 | 146627 | 146566 | ID=MS.gene92377.t1.exon12;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 146566 | 146627 | 146566 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 145610 | 145754 | 145610 | ID=MS.gene92377.t1.exon13;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 145610 | 145754 | 145610 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| chr5.1 | exon | 145044 | 145214 | 145044 | ID=MS.gene92377.t1.exon14;Parent=MS.gene92377.t1 |
| chr5.1 | CDS | 145044 | 145214 | 145044 | ID=cds.MS.gene92377.t1;Parent=MS.gene92377.t1 |
| Gene Sequence |
| Protein sequence |
