AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92508

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92508.t1 MTR_4g021260 96.660 479 16 0 1 479 1 479 0.0 967
MS.gene92508.t1 MTR_7g063040 47.579 475 223 8 17 478 23 484 3.68e-140 412
MS.gene92508.t1 MTR_0318s0020 29.289 478 271 9 19 479 128 555 9.47e-57 198
MS.gene92508.t1 MTR_6g461910 29.899 495 298 12 10 479 27 497 4.97e-53 187
MS.gene92508.t1 MTR_1g073890 43.458 214 112 2 17 230 44 248 4.66e-46 169
MS.gene92508.t1 MTR_1g073890 41.096 146 81 2 330 475 405 545 1.03e-29 122
MS.gene92508.t1 MTR_1g044135 40.187 214 118 1 17 230 41 244 7.33e-46 169
MS.gene92508.t1 MTR_1g044135 45.205 146 75 3 330 475 435 575 9.66e-33 131
MS.gene92508.t1 MTR_3g091180 42.254 142 82 0 331 472 422 563 4.30e-31 126
MS.gene92508.t1 MTR_3g091180 28.571 294 177 6 8 287 15 289 1.28e-25 110
MS.gene92508.t1 MTR_1g092540 42.857 147 80 3 328 473 427 570 5.84e-30 123
MS.gene92508.t1 MTR_1g092540 30.045 223 148 1 8 230 15 229 2.49e-29 121
MS.gene92508.t1 MTR_7g103490 39.726 146 87 1 334 479 395 539 1.13e-26 113
MS.gene92508.t1 MTR_7g103490 25.843 267 178 5 9 267 19 273 1.15e-15 79.7
MS.gene92508.t1 MTR_1g061540 38.514 148 79 4 328 472 379 517 5.90e-23 102
MS.gene92508.t1 MTR_1g061540 27.897 233 158 2 15 244 25 250 1.49e-19 91.7
MS.gene92508.t1 MTR_1g096970 25.000 232 168 2 19 250 51 276 3.39e-14 75.1
MS.gene92508.t1 MTR_1g096970 28.571 147 88 3 333 469 269 408 3.26e-11 65.9
MS.gene92508.t1 MTR_3g114010 24.766 214 155 2 19 232 122 329 3.30e-12 69.3
MS.gene92508.t1 MTR_1g025340 24.775 222 153 3 13 230 121 332 2.44e-11 66.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92508.t1 AT3G23160 40.807 223 122 2 9 231 34 246 1.21e-47 172
MS.gene92508.t1 AT3G23160 39.744 156 88 4 321 475 347 497 4.05e-29 120
MS.gene92508.t1 AT5G51670 36.413 184 107 3 300 479 281 458 1.40e-29 121
MS.gene92508.t1 AT5G51670 28.085 235 158 3 7 231 20 253 2.35e-19 90.9
MS.gene92508.t1 AT5G51670 36.413 184 107 3 300 479 281 458 1.40e-29 121
MS.gene92508.t1 AT5G51670 28.085 235 158 3 7 231 20 253 2.35e-19 90.9
MS.gene92508.t1 AT5G04550 29.412 221 147 1 19 239 26 237 1.67e-26 113
MS.gene92508.t1 AT5G04550 37.255 153 96 0 327 479 425 577 6.07e-26 111
MS.gene92508.t1 AT5G04550 29.412 221 147 1 19 239 26 237 1.67e-26 113
MS.gene92508.t1 AT5G04550 37.255 153 96 0 327 479 425 577 6.07e-26 111
MS.gene92508.t1 AT1G34320 25.229 218 159 2 19 236 155 368 1.15e-13 73.9
MS.gene92508.t1 AT1G34320 25.229 218 159 2 19 236 155 368 1.15e-13 73.9

Find 162 sgRNAs with CRISPR-Local

Find 170 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTCCATGCTCTTTGGTTT+TGG 0.148875 4.2:-81370250 MS.gene92508:CDS
GACAACAACAACAACGTTAT+TGG 0.208028 4.2:-81370492 MS.gene92508:CDS
GCGAGGATGCCGAGGGTTTC+GGG 0.218886 4.2:+81370928 None:intergenic
CTGACTTCACCACGCGCTTC+TGG 0.227279 4.2:+81370143 None:intergenic
AGCCAAGATCACAACATTTC+TGG 0.242412 4.2:+81370698 None:intergenic
GACATTGCATTACTCTGATT+TGG 0.257344 4.2:-81369630 MS.gene92508:CDS
CACAACATTTCTGGCCTATA+CGG 0.259057 4.2:+81370707 None:intergenic
TTAGTTGCTACTTTGGAAAT+AGG 0.267306 4.2:+81370118 None:intergenic
GGCGAGGATGCCGAGGGTTT+CGG 0.276811 4.2:+81370927 None:intergenic
ATTTCAAGGAAACATCATTA+TGG 0.291243 4.2:-81370387 MS.gene92508:CDS
GTTTGACCATTGTTGCCTTC+TGG 0.297365 4.2:-81370227 MS.gene92508:CDS
TTGAGAAACCTTATCACATT+AGG 0.320704 4.2:+81370094 None:intergenic
TTGGGTTGAGTTGTGTATAT+TGG 0.321774 4.2:-81369574 MS.gene92508:CDS
CGAAGGATGGCGGGAGGCGG+TGG 0.324835 4.2:-81369765 MS.gene92508:CDS
TCCCGGTAGCATCTCGTATA+AGG 0.330031 4.2:+81369871 None:intergenic
AACAACAATTCCATGCTCTT+TGG 0.331838 4.2:-81370256 MS.gene92508:CDS
TTCGGGCTCCGGCATCGTCT+TGG 0.333568 4.2:+81370945 None:intergenic
GGCCAGAAATGTTGTGATCT+TGG 0.339336 4.2:-81370700 MS.gene92508:CDS
ACCTTCATCCTCAATCTTCC+CGG 0.355259 4.2:+81369854 None:intergenic
TCATTGAAATATTCCATGTT+TGG 0.355934 4.2:+81370442 None:intergenic
CAGAAGCGCGTGGTGAAGTC+AGG 0.356121 4.2:-81370142 MS.gene92508:CDS
GTGGAGTTGGGCTTGCTTTG+AGG 0.358617 4.2:-81369967 MS.gene92508:CDS
ATTCAAATACATTACACCTT+TGG 0.360304 4.2:+81370810 None:intergenic
ATTAGGTTTAGTTGCTACTT+TGG 0.363302 4.2:+81370111 None:intergenic
GTGGCATGGGGAAAGGCATT+TGG 0.376216 4.2:-81369696 MS.gene92508:CDS
TACAACCTCATGGAGGAGTT+TGG 0.377411 4.2:+81370837 None:intergenic
CATGACACGGTCCGGTGGCA+TGG 0.385994 4.2:-81369710 MS.gene92508:CDS
AGGATGGCGGGAGGCGGTGG+AGG 0.392441 4.2:-81369762 MS.gene92508:CDS
TCGGGCTCCGGCATCGTCTT+GGG 0.396084 4.2:+81370946 None:intergenic
GGAATACATGGCAGAATTAG+AGG 0.396823 4.2:-81370530 MS.gene92508:CDS
ATGCCGAGGGTTTCGGGCTC+CGG 0.397498 4.2:+81370934 None:intergenic
TCCATGTTTGGCTTGAGACT+TGG 0.400728 4.2:+81370454 None:intergenic
CCAACTCCACCCACTGTTGA+TGG 0.409492 4.2:+81369980 None:intergenic
GAGAGTTGTATGGCAGCTTT+CGG 0.410983 4.2:+81370623 None:intergenic
ATGACACGGTCCGGTGGCAT+GGG 0.413503 4.2:-81369709 MS.gene92508:CDS
GGAGGCGGTGGAGGAGCTAA+TGG 0.417577 4.2:-81369753 MS.gene92508:CDS
TGACAAAACGGTTGGGATCA+TGG 0.418669 4.2:-81370353 MS.gene92508:CDS
CTCCTCGAGGCGTTCGGCAG+CGG 0.422247 4.2:+81370756 None:intergenic
GAGGCGACACATGGTCTTAC+CGG 0.422452 4.2:+81370897 None:intergenic
CCCAACCAACACTTCCACTA+TGG 0.427548 4.2:+81369592 None:intergenic
TTGAATTATGATACAATTCA+CGG 0.431061 4.2:+81370200 None:intergenic
CATCAACAGTGGGTGGAGTT+GGG 0.434715 4.2:-81369979 MS.gene92508:CDS
GTCGAGCTCCTCGAGGCGTT+CGG 0.435485 4.2:+81370750 None:intergenic
AAAGCAAGTGCAAAATTTCA+AGG 0.441316 4.2:-81370401 MS.gene92508:CDS
GGAGACAACGCTCCGCCAAT+AGG 0.441418 4.2:+81369930 None:intergenic
GTTCGGCAGCGGCAAGGGTG+AGG 0.443089 4.2:+81370767 None:intergenic
GGCCGAAGGATGGCGGGAGG+CGG 0.443863 4.2:-81369768 MS.gene92508:CDS
CAAACATTTGACAAAACGGT+TGG 0.446907 4.2:-81370361 MS.gene92508:CDS
AAACTCATCTCCGCGACCTC+TGG 0.454046 4.2:-81370568 MS.gene92508:CDS
GCCATAGTGGAAGTGTTGGT+TGG 0.454513 4.2:-81369593 MS.gene92508:CDS
TTCGCTGGCCGAAGGATGGC+GGG 0.455116 4.2:-81369774 MS.gene92508:CDS
CCATCAACAGTGGGTGGAGT+TGG 0.455394 4.2:-81369980 MS.gene92508:CDS
CGGTCCGGTGGCATGGGGAA+AGG 0.456055 4.2:-81369703 MS.gene92508:CDS
ATTAATGTATGCTCCGAAAA+CGG 0.456639 4.2:+81370294 None:intergenic
CGAGGCGTTCGGCAGCGGCA+AGG 0.456954 4.2:+81370761 None:intergenic
CACCGCCTCCCGCCATCCTT+CGG 0.458454 4.2:+81369766 None:intergenic
CAAATAACGGTGTTTCAGAA+TGG 0.463707 4.2:-81370180 MS.gene92508:CDS
CTATTCTGCCATGGAATACA+TGG 0.470183 4.2:-81370542 MS.gene92508:CDS
GATGAATGGTAATAATGATA+AGG 0.470751 4.2:-81370020 MS.gene92508:CDS
ACTCCACCCACTGTTGATGG+TGG 0.471222 4.2:+81369983 None:intergenic
ATTCGCTGGCCGAAGGATGG+CGG 0.476327 4.2:-81369775 MS.gene92508:CDS
CTCCAACTGTCGCGGGCGCG+TGG 0.476734 4.2:+81369909 None:intergenic
GAAACAAACATTTGACAAAA+CGG 0.478541 4.2:-81370365 MS.gene92508:CDS
CAACTAAACCTAATGTGATA+AGG 0.478852 4.2:-81370102 MS.gene92508:CDS
GGCATCCTCGCCTTTGACGC+CGG 0.480797 4.2:-81370916 MS.gene92508:CDS
AATTACACCTTGTTTAAGAT+CGG 0.483559 4.2:+81370651 None:intergenic
TTGTATCATAATTCAAATAA+CGG 0.485006 4.2:-81370193 MS.gene92508:CDS
CTCCACCCACTGTTGATGGT+GGG 0.486986 4.2:+81369984 None:intergenic
CCATAGTGGAAGTGTTGGTT+GGG 0.488653 4.2:-81369592 MS.gene92508:CDS
CTCCACGCGCCCGCGACAGT+TGG 0.489465 4.2:-81369911 MS.gene92508:CDS
GAGGCGTTCGGCAGCGGCAA+GGG 0.492378 4.2:+81370762 None:intergenic
GGCATTCGCTGGCCGAAGGA+TGG 0.496251 4.2:-81369778 MS.gene92508:CDS
GGTGATTTCTTCGTCGGAGA+GGG 0.496674 4.2:+81370858 None:intergenic
GAGTTTGGTGATTTCTTCGT+CGG 0.499213 4.2:+81370852 None:intergenic
GCTGTTACTGTCTCCCGTAT+AGG 0.500085 4.2:-81370721 MS.gene92508:CDS
AGGACATGACGGGCATTCGC+TGG 0.501959 4.2:-81369789 MS.gene92508:CDS
AGAATAGAGACCAGAGGTCG+CGG 0.502333 4.2:+81370558 None:intergenic
AAACATTTGACAAAACGGTT+GGG 0.503683 4.2:-81370360 MS.gene92508:CDS
ATAGAGCTCCGAGAGTTGTA+TGG 0.505072 4.2:+81370613 None:intergenic
GCCTTATACGAGATGCTACC+GGG 0.508415 4.2:-81369872 MS.gene92508:CDS
CATGGTCTTACCGGCGTCAA+AGG 0.512290 4.2:+81370906 None:intergenic
GTATGCTAATGTGATCCTAT+TGG 0.512424 4.2:-81369945 MS.gene92508:CDS
GAAGGCAGAGACTGCCATAG+TGG 0.513473 4.2:-81369606 MS.gene92508:CDS
GGGAGTTGTAGAGGGAGATG+AGG 0.514614 4.2:+81370878 None:intergenic
AAGGTAAAGGCGAAGCTAAA+GGG 0.517234 4.2:-81369836 MS.gene92508:CDS
GCGTCCTCTCCAACTGTCGC+GGG 0.517317 4.2:+81369902 None:intergenic
GCTAATGGAATGGCTGTCTC+CGG 0.521472 4.2:-81369738 MS.gene92508:CDS
TGCGTCCTCTCCAACTGTCG+CGG 0.521818 4.2:+81369901 None:intergenic
AAAGGGACGGTGGGCGAAAG+AGG 0.522218 4.2:-81369819 MS.gene92508:CDS
AATGCCTTTCCCCATGCCAC+CGG 0.525405 4.2:+81369699 None:intergenic
GGCCTTATACGAGATGCTAC+CGG 0.527085 4.2:-81369873 MS.gene92508:CDS
ATGCCGGAGCCCGAAACCCT+CGG 0.527389 4.2:-81370937 MS.gene92508:CDS
GAAGGTAAAGGCGAAGCTAA+AGG 0.529142 4.2:-81369837 MS.gene92508:CDS
CGGTGGCACATGACACGGTC+CGG 0.530182 4.2:-81369718 MS.gene92508:CDS
CTCTGGTCTCTATTCTGCCA+TGG 0.533506 4.2:-81370551 MS.gene92508:CDS
AGATGCTACCGGGAAGATTG+AGG 0.533778 4.2:-81369862 MS.gene92508:CDS
TCCACCCACTGTTGATGGTG+GGG 0.537885 4.2:+81369985 None:intergenic
CGTCGGAGAGGGAGTTGTAG+AGG 0.538811 4.2:+81370869 None:intergenic
GACGGGCATTCGCTGGCCGA+AGG 0.539920 4.2:-81369782 MS.gene92508:CDS
CGTCTTGGGACGCCGTGACA+TGG 0.547021 4.2:+81370960 None:intergenic
ACAACATTTCTGGCCTATAC+GGG 0.547369 4.2:+81370708 None:intergenic
TCTCAACAATCCTATGCCAA+TGG 0.552517 4.2:-81370077 MS.gene92508:CDS
TGCTAATGTGATCCTATTGG+CGG 0.555981 4.2:-81369942 MS.gene92508:CDS
GTCGGAGAGGGAGTTGTAGA+GGG 0.558708 4.2:+81370870 None:intergenic
CATGGCAGAATTAGAGGCCG+CGG 0.559813 4.2:-81370524 MS.gene92508:CDS
ACGGCGTCCCAAGACGATGC+CGG 0.560395 4.2:-81370953 MS.gene92508:CDS
GAAAGCTGCCATACAACTCT+CGG 0.563189 4.2:-81370621 MS.gene92508:CDS
TAATTCTGCCATGTATTCCA+TGG 0.568001 4.2:+81370534 None:intergenic
GCATTACTCTGATTTGGAGA+AGG 0.568074 4.2:-81369624 MS.gene92508:CDS
AAGATTGAGGATGAAGGTAA+AGG 0.568089 4.2:-81369849 MS.gene92508:CDS
ACCAAGTCTCAAGCCAAACA+TGG 0.570002 4.2:-81370455 MS.gene92508:CDS
CGACCAGAAGCAAAATCCAT+TGG 0.571431 4.2:+81370061 None:intergenic
TGCCGCTGCCGAACGCCTCG+AGG 0.573095 4.2:-81370758 MS.gene92508:CDS
GGCGAAGCTAAAGGGACGGT+GGG 0.578940 4.2:-81369828 MS.gene92508:CDS
GTCTCCGGTGGCACATGACA+CGG 0.580006 4.2:-81369723 MS.gene92508:CDS
GAGGAAGACGAAGGACATGA+CGG 0.581220 4.2:-81369800 MS.gene92508:CDS
GAAGCAAAATCCATTGGCAT+AGG 0.584255 4.2:+81370067 None:intergenic
TATCAAGATCATTGAGAAAG+CGG 0.584982 4.2:-81370593 MS.gene92508:CDS
GGAACTGAGAAAATGATGAA+TGG 0.585061 4.2:-81370034 MS.gene92508:CDS
CGTCAAAGGCGAGGATGCCG+AGG 0.586508 4.2:+81370920 None:intergenic
CGGCAGCGGCAAGGGTGAGG+AGG 0.587173 4.2:+81370770 None:intergenic
AAACCCAAAACCAAAGAGCA+TGG 0.593286 4.2:+81370246 None:intergenic
AGAAGCGCGTGGTGAAGTCA+GGG 0.594116 4.2:-81370141 MS.gene92508:CDS
ACCGGGAAGATTGAGGATGA+AGG 0.596287 4.2:-81369855 MS.gene92508:CDS
TGACACGGTCCGGTGGCATG+GGG 0.596448 4.2:-81369708 MS.gene92508:CDS
CTCGCCCCACCATCAACAGT+GGG 0.598648 4.2:-81369989 MS.gene92508:CDS
TGGTGATTTCTTCGTCGGAG+AGG 0.599109 4.2:+81370857 None:intergenic
AGGAAGACGAAGGACATGAC+GGG 0.601959 4.2:-81369799 MS.gene92508:CDS
CGCGCCCGCGACAGTTGGAG+AGG 0.602717 4.2:-81369906 MS.gene92508:CDS
GTGTATATTGGTGTGAGAGA+AGG 0.603744 4.2:-81369562 MS.gene92508:CDS
GACTGCCATAGTGGAAGTGT+TGG 0.604067 4.2:-81369597 MS.gene92508:CDS
GCCCCACCATCAACAGTGGG+TGG 0.608490 4.2:-81369986 MS.gene92508:CDS
CATGAGGTTGTAAAATCCAA+AGG 0.609869 4.2:-81370826 MS.gene92508:CDS
TGGCACATGACACGGTCCGG+TGG 0.613665 4.2:-81369715 MS.gene92508:CDS
GTTGTGATCTTGGCTTAGCG+AGG 0.614453 4.2:-81370690 MS.gene92508:CDS
GTTTAAGATCGGCATAGACA+AGG 0.614473 4.2:+81370662 None:intergenic
CGGACCGTGTCATGTGCCAC+CGG 0.615297 4.2:+81369719 None:intergenic
GCTGGCCGAAGGATGGCGGG+AGG 0.618111 4.2:-81369771 MS.gene92508:CDS
GAGGGAGATGAGGCGACACA+TGG 0.620252 4.2:+81370888 None:intergenic
GGTGTTCCAGAAGGCAACAA+TGG 0.622560 4.2:+81370221 None:intergenic
AAACGGTTGGGATCATGGCA+AGG 0.623863 4.2:-81370348 MS.gene92508:CDS
CGGTGGAGGAGCTAATGGAA+TGG 0.624107 4.2:-81369748 MS.gene92508:CDS
ACAATTCACGGTGTTCCAGA+AGG 0.624994 4.2:+81370212 None:intergenic
AATGGAATGGCTGTCTCCGG+TGG 0.627441 4.2:-81369735 MS.gene92508:CDS
AGTTGGAGAGGACGCACGTG+AGG 0.630790 4.2:-81369894 MS.gene92508:CDS
GTCTATGCCGATCTTAAACA+AGG 0.634585 4.2:-81370658 MS.gene92508:CDS
GTCAAAGGCGAGGATGCCGA+GGG 0.638397 4.2:+81370921 None:intergenic
GGAGTTGATTGTGATGGTCG+TGG 0.639920 4.2:-81370986 None:intergenic
GCTCGCCCCACCATCAACAG+TGG 0.641823 4.2:-81369990 MS.gene92508:CDS
TGGTCGTGGCTACCATGTCA+CGG 0.644384 4.2:-81370972 MS.gene92508:CDS
AGGCGAAGCTAAAGGGACGG+TGG 0.650016 4.2:-81369829 MS.gene92508:CDS
TCTTACCGGCGTCAAAGGCG+AGG 0.655393 4.2:+81370911 None:intergenic
AAGATTCGAGACAAAGCCTA+CGG 0.662914 4.2:-81369666 MS.gene92508:CDS
GTCTGCAGAAGCATCGCCGT+AGG 0.681125 4.2:+81369650 None:intergenic
CGGTGTTGTCGAGCTCCTCG+AGG 0.682713 4.2:+81370743 None:intergenic
TAAAGGCGAAGCTAAAGGGA+CGG 0.687543 4.2:-81369832 MS.gene92508:CDS
GGAAGCACTCCAGAAGCGCG+TGG 0.689025 4.2:-81370152 MS.gene92508:CDS
CGGTGTTTCAGAATGGTACG+AGG 0.698741 4.2:-81370173 MS.gene92508:CDS
TGGGCGAAAGAGGAAGACGA+AGG 0.704118 4.2:-81369809 MS.gene92508:CDS
CATGGCAGAATAGAGACCAG+AGG 0.725746 4.2:+81370552 None:intergenic
AATCACCAAACTCCTCCATG+AGG 0.743168 4.2:-81370842 MS.gene92508:CDS
TATACGGGAGACAGTAACAG+CGG 0.780862 4.2:+81370723 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTGTATCATAATTCAAATAA+CGG - chr4.2:81370336-81370355 MS.gene92508:CDS 15.0%
!! TTGAATTATGATACAATTCA+CGG + chr4.2:81370332-81370351 None:intergenic 20.0%
! ATTCAAATACATTACACCTT+TGG + chr4.2:81369722-81369741 None:intergenic 25.0%
! ATTTCAAGGAAACATCATTA+TGG - chr4.2:81370142-81370161 MS.gene92508:CDS 25.0%
! GAAACAAACATTTGACAAAA+CGG - chr4.2:81370164-81370183 MS.gene92508:CDS 25.0%
! GATGAATGGTAATAATGATA+AGG - chr4.2:81370509-81370528 MS.gene92508:CDS 25.0%
! TCATTGAAATATTCCATGTT+TGG + chr4.2:81370090-81370109 None:intergenic 25.0%
!! AATTACACCTTGTTTAAGAT+CGG + chr4.2:81369881-81369900 None:intergenic 25.0%
AAACATTTGACAAAACGGTT+GGG - chr4.2:81370169-81370188 MS.gene92508:CDS 30.0%
AAAGCAAGTGCAAAATTTCA+AGG - chr4.2:81370128-81370147 MS.gene92508:CDS 30.0%
ATTAATGTATGCTCCGAAAA+CGG + chr4.2:81370238-81370257 None:intergenic 30.0%
CAACTAAACCTAATGTGATA+AGG - chr4.2:81370427-81370446 MS.gene92508:CDS 30.0%
TATCAAGATCATTGAGAAAG+CGG - chr4.2:81369936-81369955 MS.gene92508:CDS 30.0%
TTGAGAAACCTTATCACATT+AGG + chr4.2:81370438-81370457 None:intergenic 30.0%
! ATTAGGTTTAGTTGCTACTT+TGG + chr4.2:81370421-81370440 None:intergenic 30.0%
!! TTAGTTGCTACTTTGGAAAT+AGG + chr4.2:81370414-81370433 None:intergenic 30.0%
AACAACAATTCCATGCTCTT+TGG - chr4.2:81370273-81370292 MS.gene92508:CDS 35.0%
AAGATTGAGGATGAAGGTAA+AGG - chr4.2:81370680-81370699 MS.gene92508:CDS 35.0%
CAAACATTTGACAAAACGGT+TGG - chr4.2:81370168-81370187 MS.gene92508:CDS 35.0%
CAAATAACGGTGTTTCAGAA+TGG - chr4.2:81370349-81370368 MS.gene92508:CDS 35.0%
CATGAGGTTGTAAAATCCAA+AGG - chr4.2:81369703-81369722 MS.gene92508:CDS 35.0%
GACAACAACAACAACGTTAT+TGG - chr4.2:81370037-81370056 MS.gene92508:CDS 35.0%
GACATTGCATTACTCTGATT+TGG - chr4.2:81370899-81370918 MS.gene92508:CDS 35.0%
GGAACTGAGAAAATGATGAA+TGG - chr4.2:81370495-81370514 MS.gene92508:CDS 35.0%
GTATGCTAATGTGATCCTAT+TGG - chr4.2:81370584-81370603 MS.gene92508:CDS 35.0%
TAATTCTGCCATGTATTCCA+TGG + chr4.2:81369998-81370017 None:intergenic 35.0%
! CTTTGGATTTTACAACCTCA+TGG + chr4.2:81369705-81369724 None:intergenic 35.0%
!! AATTCCATGCTCTTTGGTTT+TGG - chr4.2:81370279-81370298 MS.gene92508:CDS 35.0%
!! TTGGGTTGAGTTGTGTATAT+TGG - chr4.2:81370955-81370974 MS.gene92508:CDS 35.0%
!!! ATTCCATGCTCTTTGGTTTT+GGG - chr4.2:81370280-81370299 MS.gene92508:CDS 35.0%
!!! TTGTTGTCTTTTTTTCTCCG+CGG + chr4.2:81370025-81370044 None:intergenic 35.0%
AAACCCAAAACCAAAGAGCA+TGG + chr4.2:81370286-81370305 None:intergenic 40.0%
AAGATTCGAGACAAAGCCTA+CGG - chr4.2:81370863-81370882 MS.gene92508:CDS 40.0%
AAGGTAAAGGCGAAGCTAAA+GGG - chr4.2:81370693-81370712 MS.gene92508:CDS 40.0%
AGCCAAGATCACAACATTTC+TGG + chr4.2:81369834-81369853 None:intergenic 40.0%
CTATTCTGCCATGGAATACA+TGG - chr4.2:81369987-81370006 MS.gene92508:CDS 40.0%
GAAGCAAAATCCATTGGCAT+AGG + chr4.2:81370465-81370484 None:intergenic 40.0%
GGAATACATGGCAGAATTAG+AGG - chr4.2:81369999-81370018 MS.gene92508:CDS 40.0%
GTCTATGCCGATCTTAAACA+AGG - chr4.2:81369871-81369890 MS.gene92508:CDS 40.0%
GTGTATATTGGTGTGAGAGA+AGG - chr4.2:81370967-81370986 MS.gene92508:CDS 40.0%
TCTCAACAATCCTATGCCAA+TGG - chr4.2:81370452-81370471 MS.gene92508:CDS 40.0%
TGCTAATGTGATCCTATTGG+CGG - chr4.2:81370587-81370606 MS.gene92508:CDS 40.0%
! GAGTTTGGTGATTTCTTCGT+CGG + chr4.2:81369680-81369699 None:intergenic 40.0%
! GCAAGAATATGCTCCGTTTT+CGG - chr4.2:81370222-81370241 MS.gene92508:CDS 40.0%
! GTTTAAGATCGGCATAGACA+AGG + chr4.2:81369870-81369889 None:intergenic 40.0%
! TGGATTTTACAACCTCATGG+AGG + chr4.2:81369702-81369721 None:intergenic 40.0%
!! ACAACATTTCTGGCCTATAC+GGG + chr4.2:81369824-81369843 None:intergenic 40.0%
!! ATGCCAATGGATTTTGCTTC+TGG - chr4.2:81370465-81370484 MS.gene92508:CDS 40.0%
!! CACAACATTTCTGGCCTATA+CGG + chr4.2:81369825-81369844 None:intergenic 40.0%
!! GCATTACTCTGATTTGGAGA+AGG - chr4.2:81370905-81370924 MS.gene92508:CDS 40.0%
AATCACCAAACTCCTCCATG+AGG - chr4.2:81369687-81369706 MS.gene92508:CDS 45.0%
ACAATTCACGGTGTTCCAGA+AGG + chr4.2:81370320-81370339 None:intergenic 45.0%
ACCAAGTCTCAAGCCAAACA+TGG - chr4.2:81370074-81370093 MS.gene92508:CDS 45.0%
ACCTTCATCCTCAATCTTCC+CGG + chr4.2:81370678-81370697 None:intergenic 45.0%
ATAGAGCTCCGAGAGTTGTA+TGG + chr4.2:81369919-81369938 None:intergenic 45.0%
CGACCAGAAGCAAAATCCAT+TGG + chr4.2:81370471-81370490 None:intergenic 45.0%
GAAAGCTGCCATACAACTCT+CGG - chr4.2:81369908-81369927 MS.gene92508:CDS 45.0%
GAAGGTAAAGGCGAAGCTAA+AGG - chr4.2:81370692-81370711 MS.gene92508:CDS 45.0%
GAGAGTTGTATGGCAGCTTT+CGG + chr4.2:81369909-81369928 None:intergenic 45.0%
GGCCAGAAATGTTGTGATCT+TGG - chr4.2:81369829-81369848 MS.gene92508:CDS 45.0%
GTTTGACCATTGTTGCCTTC+TGG - chr4.2:81370302-81370321 MS.gene92508:CDS 45.0%
TAAAGGCGAAGCTAAAGGGA+CGG - chr4.2:81370697-81370716 MS.gene92508:CDS 45.0%
TACAACCTCATGGAGGAGTT+TGG + chr4.2:81369695-81369714 None:intergenic 45.0%
TATACGGGAGACAGTAACAG+CGG + chr4.2:81369809-81369828 None:intergenic 45.0%
TGACAAAACGGTTGGGATCA+TGG - chr4.2:81370176-81370195 MS.gene92508:CDS 45.0%
! GAGGAGGAAGTTTTCTTGGT+TGG + chr4.2:81369746-81369765 None:intergenic 45.0%
! GATTTTGCTTCTGGTCGTGA+TGG - chr4.2:81370474-81370493 MS.gene92508:CDS 45.0%
!! CCATAGTGGAAGTGTTGGTT+GGG - chr4.2:81370937-81370956 MS.gene92508:CDS 45.0%
!! TCCATGTTTGGCTTGAGACT+TGG + chr4.2:81370078-81370097 None:intergenic 45.0%
AAACGGTTGGGATCATGGCA+AGG - chr4.2:81370181-81370200 MS.gene92508:CDS 50.0%
ACCGGGAAGATTGAGGATGA+AGG - chr4.2:81370674-81370693 MS.gene92508:CDS 50.0%
AGAATAGAGACCAGAGGTCG+CGG + chr4.2:81369974-81369993 None:intergenic 50.0%
AGATGCTACCGGGAAGATTG+AGG - chr4.2:81370667-81370686 MS.gene92508:CDS 50.0%
AGGAAGACGAAGGACATGAC+GGG - chr4.2:81370730-81370749 MS.gene92508:CDS 50.0%
CATCAACAGTGGGTGGAGTT+GGG - chr4.2:81370550-81370569 MS.gene92508:CDS 50.0%
CATGGCAGAATAGAGACCAG+AGG + chr4.2:81369980-81369999 None:intergenic 50.0%
CCCAACCAACACTTCCACTA+TGG + chr4.2:81370940-81370959 None:intergenic 50.0%
CGGTGTTTCAGAATGGTACG+AGG - chr4.2:81370356-81370375 MS.gene92508:CDS 50.0%
CTCTGGTCTCTATTCTGCCA+TGG - chr4.2:81369978-81369997 MS.gene92508:CDS 50.0%
GAGGAAGACGAAGGACATGA+CGG - chr4.2:81370729-81370748 MS.gene92508:CDS 50.0%
GCCTTATACGAGATGCTACC+GGG - chr4.2:81370657-81370676 MS.gene92508:CDS 50.0%
GCTAATGGAATGGCTGTCTC+CGG - chr4.2:81370791-81370810 MS.gene92508:CDS 50.0%
GCTGTTACTGTCTCCCGTAT+AGG - chr4.2:81369808-81369827 MS.gene92508:CDS 50.0%
GGTGATTTCTTCGTCGGAGA+GGG + chr4.2:81369674-81369693 None:intergenic 50.0%
GGTGTTCCAGAAGGCAACAA+TGG + chr4.2:81370311-81370330 None:intergenic 50.0%
GTTGTGATCTTGGCTTAGCG+AGG - chr4.2:81369839-81369858 MS.gene92508:CDS 50.0%
TCCCGGTAGCATCTCGTATA+AGG + chr4.2:81370661-81370680 None:intergenic 50.0%
TGGTGATTTCTTCGTCGGAG+AGG + chr4.2:81369675-81369694 None:intergenic 50.0%
! GACTGCCATAGTGGAAGTGT+TGG - chr4.2:81370932-81370951 MS.gene92508:CDS 50.0%
! GGCCTTATACGAGATGCTAC+CGG - chr4.2:81370656-81370675 MS.gene92508:CDS 50.0%
! GGGTGAGGAGGAAGTTTTCT+TGG + chr4.2:81369750-81369769 None:intergenic 50.0%
!! GCCATAGTGGAAGTGTTGGT+TGG - chr4.2:81370936-81370955 MS.gene92508:CDS 50.0%
AAACTCATCTCCGCGACCTC+TGG - chr4.2:81369961-81369980 MS.gene92508:CDS 55.0%
AATGCCTTTCCCCATGCCAC+CGG + chr4.2:81370833-81370852 None:intergenic 55.0%
AATGGAATGGCTGTCTCCGG+TGG - chr4.2:81370794-81370813 MS.gene92508:CDS 55.0%
CATGGCAGAATTAGAGGCCG+CGG - chr4.2:81370005-81370024 MS.gene92508:CDS 55.0%
CCAACTCCACCCACTGTTGA+TGG + chr4.2:81370552-81370571 None:intergenic 55.0%
CCATCAACAGTGGGTGGAGT+TGG - chr4.2:81370549-81370568 MS.gene92508:CDS 55.0%
CGGTGGAGGAGCTAATGGAA+TGG - chr4.2:81370781-81370800 MS.gene92508:CDS 55.0%
GAAGGCAGAGACTGCCATAG+TGG - chr4.2:81370923-81370942 MS.gene92508:CDS 55.0%
GGGAGTTGTAGAGGGAGATG+AGG + chr4.2:81369654-81369673 None:intergenic 55.0%
GTCGGAGAGGGAGTTGTAGA+GGG + chr4.2:81369662-81369681 None:intergenic 55.0%
TGGGCGAAAGAGGAAGACGA+AGG - chr4.2:81370720-81370739 MS.gene92508:CDS 55.0%
TGGTCGTGGCTACCATGTCA+CGG - chr4.2:81369557-81369576 MS.gene92508:CDS 55.0%
! ACTCCACCCACTGTTGATGG+TGG + chr4.2:81370549-81370568 None:intergenic 55.0%
! AGAAGCGCGTGGTGAAGTCA+GGG - chr4.2:81370388-81370407 MS.gene92508:CDS 55.0%
! CATGGTCTTACCGGCGTCAA+AGG + chr4.2:81369626-81369645 None:intergenic 55.0%
! GAGGCGACACATGGTCTTAC+CGG + chr4.2:81369635-81369654 None:intergenic 55.0%
! GTGGAGTTGGGCTTGCTTTG+AGG - chr4.2:81370562-81370581 MS.gene92508:CDS 55.0%
!! CTCCACCCACTGTTGATGGT+GGG + chr4.2:81370548-81370567 None:intergenic 55.0%
!! GTGGCATGGGGAAAGGCATT+TGG - chr4.2:81370833-81370852 MS.gene92508:CDS 55.0%
!! TCCACCCACTGTTGATGGTG+GGG + chr4.2:81370547-81370566 None:intergenic 55.0%
AAAGGGACGGTGGGCGAAAG+AGG - chr4.2:81370710-81370729 MS.gene92508:CDS 60.0%
AGGCGAAGCTAAAGGGACGG+TGG - chr4.2:81370700-81370719 MS.gene92508:CDS 60.0%
AGTTGGAGAGGACGCACGTG+AGG - chr4.2:81370635-81370654 MS.gene92508:CDS 60.0%
ATGACACGGTCCGGTGGCAT+GGG - chr4.2:81370820-81370839 MS.gene92508:CDS 60.0%
ATTCGCTGGCCGAAGGATGG+CGG - chr4.2:81370754-81370773 MS.gene92508:CDS 60.0%
CGTCGGAGAGGGAGTTGTAG+AGG + chr4.2:81369663-81369682 None:intergenic 60.0%
CTCGCCCCACCATCAACAGT+GGG - chr4.2:81370540-81370559 MS.gene92508:CDS 60.0%
CTGACTTCACCACGCGCTTC+TGG + chr4.2:81370389-81370408 None:intergenic 60.0%
GAGGGAGATGAGGCGACACA+TGG + chr4.2:81369644-81369663 None:intergenic 60.0%
GGAGACAACGCTCCGCCAAT+AGG + chr4.2:81370602-81370621 None:intergenic 60.0%
GGCGAAGCTAAAGGGACGGT+GGG - chr4.2:81370701-81370720 MS.gene92508:CDS 60.0%
GTCAAAGGCGAGGATGCCGA+GGG + chr4.2:81369611-81369630 None:intergenic 60.0%
GTCTCCGGTGGCACATGACA+CGG - chr4.2:81370806-81370825 MS.gene92508:CDS 60.0%
TCTTACCGGCGTCAAAGGCG+AGG + chr4.2:81369621-81369640 None:intergenic 60.0%
TGCGTCCTCTCCAACTGTCG+CGG + chr4.2:81370631-81370650 None:intergenic 60.0%
! CAGAAGCGCGTGGTGAAGTC+AGG - chr4.2:81370387-81370406 MS.gene92508:CDS 60.0%
!! AGGACATGACGGGCATTCGC+TGG - chr4.2:81370740-81370759 MS.gene92508:CDS 60.0%
!! GTCTGCAGAAGCATCGCCGT+AGG + chr4.2:81370882-81370901 None:intergenic 60.0%
ACGGCGTCCCAAGACGATGC+CGG - chr4.2:81369576-81369595 MS.gene92508:CDS 65.0%
ATGCCGAGGGTTTCGGGCTC+CGG + chr4.2:81369598-81369617 None:intergenic 65.0%
ATGCCGGAGCCCGAAACCCT+CGG - chr4.2:81369592-81369611 MS.gene92508:CDS 65.0%
CATGACACGGTCCGGTGGCA+TGG - chr4.2:81370819-81370838 MS.gene92508:CDS 65.0%
CGGACCGTGTCATGTGCCAC+CGG + chr4.2:81370813-81370832 None:intergenic 65.0%
CGGTGGCACATGACACGGTC+CGG - chr4.2:81370811-81370830 MS.gene92508:CDS 65.0%
CGTCAAAGGCGAGGATGCCG+AGG + chr4.2:81369612-81369631 None:intergenic 65.0%
CGTCTTGGGACGCCGTGACA+TGG + chr4.2:81369572-81369591 None:intergenic 65.0%
GCCCCACCATCAACAGTGGG+TGG - chr4.2:81370543-81370562 MS.gene92508:CDS 65.0%
GCGAGGATGCCGAGGGTTTC+GGG + chr4.2:81369604-81369623 None:intergenic 65.0%
GCGTCCTCTCCAACTGTCGC+GGG + chr4.2:81370630-81370649 None:intergenic 65.0%
GCTCGCCCCACCATCAACAG+TGG - chr4.2:81370539-81370558 MS.gene92508:CDS 65.0%
GGAGGCGGTGGAGGAGCTAA+TGG - chr4.2:81370776-81370795 MS.gene92508:CDS 65.0%
GGCATCCTCGCCTTTGACGC+CGG - chr4.2:81369613-81369632 MS.gene92508:CDS 65.0%
GGCATTCGCTGGCCGAAGGA+TGG - chr4.2:81370751-81370770 MS.gene92508:CDS 65.0%
GGCGAGGATGCCGAGGGTTT+CGG + chr4.2:81369605-81369624 None:intergenic 65.0%
TCGGGCTCCGGCATCGTCTT+GGG + chr4.2:81369586-81369605 None:intergenic 65.0%
TGACACGGTCCGGTGGCATG+GGG - chr4.2:81370821-81370840 MS.gene92508:CDS 65.0%
TGGCACATGACACGGTCCGG+TGG - chr4.2:81370814-81370833 MS.gene92508:CDS 65.0%
TTCGCTGGCCGAAGGATGGC+GGG - chr4.2:81370755-81370774 MS.gene92508:CDS 65.0%
TTCGGGCTCCGGCATCGTCT+TGG + chr4.2:81369587-81369606 None:intergenic 65.0%
! GTCGAGCTCCTCGAGGCGTT+CGG + chr4.2:81369782-81369801 None:intergenic 65.0%
!! CGGTGTTGTCGAGCTCCTCG+AGG + chr4.2:81369789-81369808 None:intergenic 65.0%
!! GGAAGCACTCCAGAAGCGCG+TGG - chr4.2:81370377-81370396 MS.gene92508:CDS 65.0%
CACCGCCTCCCGCCATCCTT+CGG + chr4.2:81370766-81370785 None:intergenic 70.0%
CGGTCCGGTGGCATGGGGAA+AGG - chr4.2:81370826-81370845 MS.gene92508:CDS 70.0%
GACGGGCATTCGCTGGCCGA+AGG - chr4.2:81370747-81370766 MS.gene92508:CDS 70.0%
GTTCGGCAGCGGCAAGGGTG+AGG + chr4.2:81369765-81369784 None:intergenic 70.0%
! CTCCTCGAGGCGTTCGGCAG+CGG + chr4.2:81369776-81369795 None:intergenic 70.0%
! GAGGCGTTCGGCAGCGGCAA+GGG + chr4.2:81369770-81369789 None:intergenic 70.0%
CGCGCCCGCGACAGTTGGAG+AGG - chr4.2:81370623-81370642 MS.gene92508:CDS 75.0%
CGGCAGCGGCAAGGGTGAGG+AGG + chr4.2:81369762-81369781 None:intergenic 75.0%
CTCCAACTGTCGCGGGCGCG+TGG + chr4.2:81370623-81370642 None:intergenic 75.0%
CTCCACGCGCCCGCGACAGT+TGG - chr4.2:81370618-81370637 MS.gene92508:CDS 75.0%
TGCCGCTGCCGAACGCCTCG+AGG - chr4.2:81369771-81369790 MS.gene92508:CDS 75.0%
! CGAGGCGTTCGGCAGCGGCA+AGG + chr4.2:81369771-81369790 None:intergenic 75.0%
!! AGGATGGCGGGAGGCGGTGG+AGG - chr4.2:81370767-81370786 MS.gene92508:CDS 75.0%
!! CGAAGGATGGCGGGAGGCGG+TGG - chr4.2:81370764-81370783 MS.gene92508:CDS 75.0%
!! GCTGGCCGAAGGATGGCGGG+AGG - chr4.2:81370758-81370777 MS.gene92508:CDS 75.0%
!! GGCCGAAGGATGGCGGGAGG+CGG - chr4.2:81370761-81370780 MS.gene92508:CDS 75.0%


Chromosome Type Strat End Strand Name
chr4.2 gene 81369556 81370995 81369556 ID=MS.gene92508
chr4.2 mRNA 81369556 81370995 81369556 ID=MS.gene92508.t1;Parent=MS.gene92508
chr4.2 exon 81369556 81370995 81369556 ID=MS.gene92508.t1.exon1;Parent=MS.gene92508.t1
chr4.2 CDS 81369556 81370995 81369556 ID=cds.MS.gene92508.t1;Parent=MS.gene92508.t1
Gene Sequence

>MS.gene92508

ATGGTCGTGGCTACCATGTCACGGCGTCCCAAGACGATGCCGGAGCCCGAAACCCTCGGCATCCTCGCCTTTGACGCCGGTAAGACCATGTGTCGCCTCATCTCCCTCTACAACTCCCTCTCCGACGAAGAAATCACCAAACTCCTCCATGAGGTTGTAAAATCCAAAGGTGTAATGTATTTGAATTCCAACCAAGAAAACTTCCTCCTCACCCTTGCCGCTGCCGAACGCCTCGAGGAGCTCGACAACACCGCTGTTACTGTCTCCCGTATAGGCCAGAAATGTTGTGATCTTGGCTTAGCGAGGTTTGACCTTGTCTATGCCGATCTTAAACAAGGTGTAATTGATCTCCGAAAGCTGCCATACAACTCTCGGAGCTCTATCAAGATCATTGAGAAAGCGGAGAAACTCATCTCCGCGACCTCTGGTCTCTATTCTGCCATGGAATACATGGCAGAATTAGAGGCCGCGGAGAAAAAAAGACAACAACAACAACGTTATTGGAACACAACAACAAAACCAAGTCTCAAGCCAAACATGGAATATTTCAATGAGAAATTAGTGTTTCAAAGAAAGCAAGTGCAAAATTTCAAGGAAACATCATTATGGAAACAAACATTTGACAAAACGGTTGGGATCATGGCAAGGCTTGTGTGCATTGTGTACGCAAGAATATGCTCCGTTTTCGGAGCATACATTAATGACGAACACGATGACAACAACAATTCCATGCTCTTTGGTTTTGGGTTTGACCATTGTTGCCTTCTGGAACACCGTGAATTGTATCATAATTCAAATAACGGTGTTTCAGAATGGTACGAGGAAGCACTCCAGAAGCGCGTGGTGAAGTCAGGGCCTATTTCCAAAGTAGCAACTAAACCTAATGTGATAAGGTTTCTCAACAATCCTATGCCAATGGATTTTGCTTCTGGTCGTGATGGAACTGAGAAAATGATGAATGGTAATAATGATAAGGTTTTAAAGCTCGCCCCACCATCAACAGTGGGTGGAGTTGGGCTTGCTTTGAGGTATGCTAATGTGATCCTATTGGCGGAGCGTTGTCTCCACGCGCCCGCGACAGTTGGAGAGGACGCACGTGAGGCCTTATACGAGATGCTACCGGGAAGATTGAGGATGAAGGTAAAGGCGAAGCTAAAGGGACGGTGGGCGAAAGAGGAAGACGAAGGACATGACGGGCATTCGCTGGCCGAAGGATGGCGGGAGGCGGTGGAGGAGCTAATGGAATGGCTGTCTCCGGTGGCACATGACACGGTCCGGTGGCATGGGGAAAGGCATTTGGAGAAGACAAGATTCGAGACAAAGCCTACGGCGATGCTTCTGCAGACATTGCATTACTCTGATTTGGAGAAGGCAGAGACTGCCATAGTGGAAGTGTTGGTTGGGTTGAGTTGTGTATATTGGTGTGAGAGAAGGTTATAG
Protein sequence

>MS.gene92508.t1

MVVATMSRRPKTMPEPETLGILAFDAGKTMCRLISLYNSLSDEEITKLLHEVVKSKGVMYLNSNQENFLLTLAAAERLEELDNTAVTVSRIGQKCCDLGLARFDLVYADLKQGVIDLRKLPYNSRSSIKIIEKAEKLISATSGLYSAMEYMAELEAAEKKRQQQQRYWNTTTKPSLKPNMEYFNEKLVFQRKQVQNFKETSLWKQTFDKTVGIMARLVCIVYARICSVFGAYINDEHDDNNNSMLFGFGFDHCCLLEHRELYHNSNNGVSEWYEEALQKRVVKSGPISKVATKPNVIRFLNNPMPMDFASGRDGTEKMMNGNNDKVLKLAPPSTVGGVGLALRYANVILLAERCLHAPATVGEDAREALYEMLPGRLRMKVKAKLKGRWAKEEDEGHDGHSLAEGWREAVEELMEWLSPVAHDTVRWHGERHLEKTRFETKPTAMLLQTLHYSDLEKAETAIVEVLVGLSCVYWCERRL