Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92593.t1 | RHN58994.1 | 72.4 | 243 | 62 | 2 | 13 | 253 | 40 | 279 | 1.00E-88 | 336.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92593.t1 | A0A396I454 | 72.4 | 243 | 62 | 2 | 13 | 253 | 40 | 279 | 7.4e-89 | 336.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene92593 | 0.801142 | 1.04E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92593.t1 | MTR_4g019310 | 50.160 | 313 | 87 | 5 | 9 | 255 | 158 | 467 | 7.48e-87 | 267 |
| MS.gene92593.t1 | MTR_4g019330 | 71.250 | 160 | 41 | 2 | 96 | 253 | 1 | 157 | 1.22e-66 | 206 |
| MS.gene92593.t1 | MTR_4g019340 | 32.817 | 323 | 143 | 12 | 14 | 271 | 192 | 505 | 1.17e-35 | 133 |
| MS.gene92593.t1 | MTR_7g066350 | 33.094 | 278 | 147 | 7 | 16 | 258 | 158 | 431 | 1.68e-34 | 129 |
| MS.gene92593.t1 | MTR_7g066480 | 37.959 | 245 | 130 | 7 | 18 | 250 | 160 | 394 | 1.51e-33 | 126 |
| MS.gene92593.t1 | MTR_7g066260 | 33.704 | 270 | 140 | 8 | 18 | 250 | 168 | 435 | 1.25e-31 | 122 |
| MS.gene92593.t1 | MTR_4g017610 | 32.362 | 309 | 148 | 9 | 3 | 255 | 154 | 457 | 3.24e-31 | 120 |
| MS.gene92593.t1 | MTR_7g066340 | 32.103 | 271 | 151 | 5 | 16 | 254 | 161 | 430 | 4.55e-30 | 117 |
| MS.gene92593.t1 | MTR_1g041315 | 30.928 | 291 | 154 | 8 | 13 | 258 | 161 | 449 | 5.79e-29 | 115 |
| MS.gene92593.t1 | MTR_4g017550 | 30.931 | 333 | 141 | 12 | 3 | 255 | 128 | 451 | 6.19e-29 | 114 |
| MS.gene92593.t1 | MTR_4g017410 | 30.696 | 316 | 151 | 9 | 3 | 255 | 152 | 462 | 1.35e-28 | 114 |
| MS.gene92593.t1 | MTR_4g017830 | 36.757 | 185 | 104 | 4 | 3 | 178 | 151 | 331 | 3.85e-28 | 112 |
| MS.gene92593.t1 | MTR_4g017440 | 37.791 | 172 | 94 | 2 | 15 | 178 | 172 | 338 | 1.00e-27 | 111 |
| MS.gene92593.t1 | MTR_7g063670 | 33.455 | 275 | 135 | 8 | 18 | 250 | 156 | 424 | 1.05e-27 | 111 |
| MS.gene92593.t1 | MTR_7g066490 | 36.179 | 246 | 120 | 10 | 18 | 250 | 159 | 380 | 1.32e-27 | 110 |
| MS.gene92593.t1 | MTR_7g066400 | 29.054 | 296 | 154 | 7 | 6 | 250 | 120 | 410 | 1.06e-26 | 108 |
| MS.gene92593.t1 | MTR_4g017470 | 36.842 | 190 | 98 | 4 | 2 | 178 | 118 | 298 | 2.54e-26 | 107 |
| MS.gene92593.t1 | MTR_3g007740 | 31.618 | 272 | 147 | 4 | 18 | 250 | 144 | 415 | 1.71e-25 | 104 |
| MS.gene92593.t1 | MTR_7g058700 | 30.970 | 268 | 136 | 8 | 17 | 258 | 659 | 903 | 3.02e-25 | 105 |
| MS.gene92593.t1 | MTR_7g058710 | 36.364 | 176 | 92 | 3 | 17 | 181 | 154 | 320 | 2.45e-24 | 102 |
| MS.gene92593.t1 | MTR_7g066290 | 32.653 | 245 | 147 | 6 | 18 | 250 | 168 | 406 | 6.01e-23 | 97.4 |
| MS.gene92593.t1 | MTR_7g063920 | 29.310 | 290 | 143 | 8 | 16 | 250 | 121 | 403 | 1.54e-22 | 96.3 |
| MS.gene92593.t1 | MTR_7g063920 | 30.058 | 173 | 91 | 5 | 115 | 263 | 12 | 178 | 5.12e-11 | 62.8 |
| MS.gene92593.t1 | MTR_7g066570 | 36.257 | 171 | 95 | 3 | 16 | 181 | 163 | 324 | 1.81e-22 | 97.1 |
| MS.gene92593.t1 | MTR_7g066360 | 33.840 | 263 | 140 | 10 | 18 | 250 | 164 | 422 | 5.15e-22 | 95.1 |
| MS.gene92593.t1 | MTR_7g063900 | 36.095 | 169 | 96 | 3 | 18 | 181 | 158 | 319 | 2.46e-21 | 93.2 |
| MS.gene92593.t1 | MTR_7g012680 | 30.070 | 286 | 120 | 8 | 16 | 250 | 162 | 418 | 3.86e-21 | 92.4 |
| MS.gene92593.t1 | MTR_7g063880 | 28.720 | 289 | 139 | 8 | 18 | 250 | 158 | 435 | 4.52e-20 | 89.7 |
| MS.gene92593.t1 | MTR_7g062300 | 28.028 | 289 | 148 | 7 | 18 | 250 | 162 | 446 | 1.03e-19 | 88.6 |
| MS.gene92593.t1 | MTR_7g063890 | 35.928 | 167 | 98 | 3 | 18 | 181 | 175 | 335 | 3.19e-19 | 87.4 |
| MS.gene92593.t1 | MTR_7g063830 | 35.632 | 174 | 92 | 5 | 9 | 176 | 157 | 316 | 5.31e-19 | 86.3 |
| MS.gene92593.t1 | MTR_7g066680 | 37.879 | 132 | 75 | 3 | 61 | 186 | 30 | 160 | 5.99e-19 | 85.5 |
| MS.gene92593.t1 | MTR_7g063660 | 33.679 | 193 | 116 | 4 | 9 | 200 | 153 | 334 | 1.67e-18 | 85.1 |
| MS.gene92593.t1 | MTR_7g066310 | 33.333 | 168 | 83 | 3 | 115 | 254 | 194 | 360 | 4.78e-18 | 83.6 |
| MS.gene92593.t1 | MTR_7g062280 | 31.395 | 172 | 114 | 2 | 18 | 188 | 172 | 340 | 9.51e-18 | 82.8 |
| MS.gene92593.t1 | MTR_7g066430 | 34.783 | 184 | 102 | 5 | 15 | 186 | 154 | 331 | 1.57e-17 | 82.4 |
| MS.gene92593.t1 | MTR_7g063820 | 36.810 | 163 | 92 | 4 | 18 | 176 | 161 | 316 | 4.42e-17 | 80.9 |
| MS.gene92593.t1 | MTR_7g063840 | 30.952 | 168 | 105 | 4 | 18 | 181 | 157 | 317 | 5.56e-16 | 77.8 |
| MS.gene92593.t1 | MTR_7g066580 | 35.065 | 154 | 70 | 4 | 39 | 176 | 138 | 277 | 1.50e-15 | 76.3 |
| MS.gene92593.t1 | MTR_7g066280 | 29.586 | 169 | 97 | 3 | 16 | 182 | 70 | 218 | 2.20e-14 | 72.8 |
| MS.gene92593.t1 | MTR_7g066410 | 24.412 | 340 | 166 | 8 | 18 | 267 | 165 | 503 | 3.25e-14 | 72.4 |
| MS.gene92593.t1 | MTR_7g063690 | 32.886 | 149 | 84 | 5 | 2 | 141 | 81 | 222 | 7.50e-12 | 63.9 |
| MS.gene92593.t1 | MTR_8g023240 | 27.619 | 210 | 144 | 4 | 18 | 220 | 171 | 379 | 8.97e-12 | 65.5 |
| MS.gene92593.t1 | MTR_2g029400 | 28.395 | 162 | 84 | 5 | 27 | 182 | 125 | 260 | 3.42e-11 | 63.2 |
| MS.gene92593.t1 | MTR_3g065200 | 23.929 | 280 | 140 | 6 | 18 | 250 | 141 | 394 | 9.13e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene92593.t1 | AT5G01130 | 32.090 | 268 | 145 | 7 | 25 | 258 | 161 | 425 | 2.98e-24 | 101 |
| MS.gene92593.t1 | AT5G01140 | 27.431 | 288 | 153 | 5 | 16 | 250 | 140 | 424 | 1.07e-22 | 97.1 |
| MS.gene92593.t1 | AT3G09110 | 37.580 | 157 | 92 | 2 | 24 | 176 | 165 | 319 | 2.04e-22 | 95.1 |
| MS.gene92593.t1 | AT3G09140 | 29.032 | 310 | 157 | 8 | 2 | 250 | 159 | 466 | 8.63e-21 | 92.0 |
| MS.gene92593.t1 | AT5G01120 | 34.807 | 181 | 112 | 2 | 1 | 175 | 148 | 328 | 3.51e-20 | 90.1 |
| MS.gene92593.t1 | AT3G09120 | 34.641 | 153 | 95 | 2 | 19 | 168 | 163 | 313 | 2.27e-17 | 80.9 |
| MS.gene92593.t1 | AT3G09140 | 26.866 | 335 | 154 | 10 | 5 | 250 | 162 | 494 | 1.26e-15 | 76.6 |
| MS.gene92593.t1 | AT5G01150 | 30.055 | 183 | 120 | 4 | 2 | 176 | 143 | 325 | 5.26e-15 | 75.1 |
Find 43 sgRNAs with CRISPR-Local
Find 131 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCCTCTGAGTGATGTATTCT+TGG | 0.245988 | 4.2:+82993155 | MS.gene92593:CDS |
| CAACATACCATTGGATGATT+TGG | 0.277345 | 4.2:+82993620 | MS.gene92593:CDS |
| AAAGTGCTTCAAAGCTTTCC+TGG | 0.336987 | 4.2:+82991862 | MS.gene92593:CDS |
| TTGTGAGAAATTTATGGTTC+AGG | 0.367812 | 4.2:+82991753 | None:intergenic |
| ATAATAATGTGGAGGTCTTA+AGG | 0.398414 | 4.2:-82993211 | None:intergenic |
| AATGTGCATCATAGAGGTTT+TGG | 0.399001 | 4.2:+82991781 | MS.gene92593:CDS |
| TTAAGGAGAAAGGGTACAAT+AGG | 0.401192 | 4.2:-82993194 | None:intergenic |
| ATTTACTTACTGTTACCTTA+AGG | 0.401448 | 4.2:-82993260 | None:intergenic |
| TCAATCCTTCATGTTTCATA+AGG | 0.411494 | 4.2:+82993436 | MS.gene92593:CDS |
| TTTGAGGCAAAATCTCCATA+TGG | 0.437503 | 4.2:+82993480 | MS.gene92593:CDS |
| TACATCACTCAGAGGAAACT+TGG | 0.450504 | 4.2:-82993148 | None:intergenic |
| TGTTTCTGTAACCAAGTTGT+TGG | 0.453923 | 4.2:-82991903 | None:intergenic |
| TGCTCTAGAACTGATCCAAC+AGG | 0.472921 | 4.2:-82993354 | None:intergenic |
| TAAATTTAGCGGAGAGAGGA+TGG | 0.474728 | 4.2:-82993679 | None:intergenic |
| TACTACTATTATGAACCTTA+AGG | 0.477721 | 4.2:+82993245 | MS.gene92593:CDS |
| CATACCATTGGATGATTTGG+AGG | 0.484516 | 4.2:+82993623 | MS.gene92593:CDS |
| CTTCAGCAACTCCAACAACT+TGG | 0.486952 | 4.2:+82991892 | MS.gene92593:CDS |
| TGTGGAGGTCTTAAGGAGAA+AGG | 0.491558 | 4.2:-82993204 | None:intergenic |
| AAGTGCTTCAAAGCTTTCCT+GGG | 0.495084 | 4.2:+82991863 | MS.gene92593:CDS |
| GCAAAAGCTCAACATACCAT+TGG | 0.500905 | 4.2:+82993611 | MS.gene92593:CDS |
| AAAGGCCTTATGAAACATGA+AGG | 0.503766 | 4.2:-82993441 | None:intergenic |
| GTGGAGGTCTTAAGGAGAAA+GGG | 0.503814 | 4.2:-82993203 | None:intergenic |
| GCCATCACAATTTGTTGTGT+GGG | 0.513624 | 4.2:+82993536 | MS.gene92593:CDS |
| GGCCATCACAATTTGTTGTG+TGG | 0.538348 | 4.2:+82993535 | MS.gene92593:CDS |
| AGTGATGTATTCTTGGCAAA+CGG | 0.542421 | 4.2:+82993162 | MS.gene92593:CDS |
| GCAGCACAAGATAAATTTAG+CGG | 0.542871 | 4.2:-82993690 | None:intergenic |
| TAATCTTCAAGTGACACCAT+TGG | 0.576349 | 4.2:+82993560 | MS.gene92593:CDS |
| TCAGTTCTAGAGCAATTGAA+TGG | 0.578611 | 4.2:+82993363 | MS.gene92593:CDS |
| CTACTCTAGGCATTGTGAAG+AGG | 0.587210 | 4.2:+82993514 | MS.gene92593:CDS |
| AGTTGCTGAAGAGTGTTCCC+AGG | 0.589986 | 4.2:-82991880 | None:intergenic |
| ATAGAAATGCATGTCACTGT+TGG | 0.599207 | 4.2:+82991937 | MS.gene92593:CDS |
| ATCACTCAGAGGAAACTTGG+AGG | 0.601649 | 4.2:-82993145 | None:intergenic |
| CTAGAAATATTATCATCCAA+TGG | 0.607733 | 4.2:-82993576 | None:intergenic |
| TCCCACACAACAAATTGTGA+TGG | 0.608209 | 4.2:-82993537 | None:intergenic |
| AAGATAAATTTAGCGGAGAG+AGG | 0.609320 | 4.2:-82993683 | None:intergenic |
| TGTCACTGTTGGTTTGAAAG+AGG | 0.609598 | 4.2:+82991948 | MS.gene92593:CDS |
| TGCTCCTCCAAATCATCCAA+TGG | 0.610653 | 4.2:-82993627 | None:intergenic |
| GCAGTAGCATCATAATAATG+TGG | 0.620233 | 4.2:-82993222 | None:intergenic |
| GTAGAGAATGTGCATCATAG+AGG | 0.634323 | 4.2:+82991775 | MS.gene92593:CDS |
| GGTGAGCATTAGAGAGACAC+AGG | 0.648194 | 4.2:+82993653 | MS.gene92593:CDS |
| GGATGATTTGGAGGAGCATG+TGG | 0.648328 | 4.2:+82993632 | MS.gene92593:CDS |
| GTAGCATCATAATAATGTGG+AGG | 0.668124 | 4.2:-82993219 | None:intergenic |
| GCCAAGAATACATCACTCAG+AGG | 0.691650 | 4.2:-82993156 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GAATTGTTATAATTAAATTA+AGG | - | chr4.2:82993036-82993055 | None:intergenic | 10.0% |
| !!! | CTGTTTATATTTTTAGATTT+TGG | + | chr4.2:82993101-82993120 | MS.gene92593:intron | 15.0% |
| !! | AGATATTTCAAAAATCCTTT+AGG | - | chr4.2:82992351-82992370 | None:intergenic | 20.0% |
| !! | ATTACATCCAATAAAAAAGT+GGG | + | chr4.2:82992726-82992745 | MS.gene92593:intron | 20.0% |
| !! | CACTTATAAATCGATAAATA+TGG | - | chr4.2:82992567-82992586 | None:intergenic | 20.0% |
| !! | TAATTAAATTAAGGTGCAAA+AGG | - | chr4.2:82993027-82993046 | None:intergenic | 20.0% |
| !!! | AAAAGATTCATGTCTTTTAA+AGG | - | chr4.2:82993462-82993481 | None:intergenic | 20.0% |
| !!! | AAAGAAAACAAGTTTTGAAA+TGG | + | chr4.2:82992064-82992083 | MS.gene92593:intron | 20.0% |
| !!! | ATCTTTGAAATATATATGCA+TGG | + | chr4.2:82992014-82992033 | MS.gene92593:intron | 20.0% |
| !!! | GAAAAGTATTTGAAACTTTT+AGG | + | chr4.2:82992086-82992105 | MS.gene92593:intron | 20.0% |
| ! | ATATTGCATGTTATATGCAT+GGG | - | chr4.2:82992897-82992916 | None:intergenic | 25.0% |
| ! | ATTTACTTACTGTTACCTTA+AGG | - | chr4.2:82993263-82993282 | None:intergenic | 25.0% |
| ! | CTAGAAATATTATCATCCAA+TGG | - | chr4.2:82993579-82993598 | None:intergenic | 25.0% |
| ! | GATTACATCCAATAAAAAAG+TGG | + | chr4.2:82992725-82992744 | MS.gene92593:intron | 25.0% |
| ! | TACTACTATTATGAACCTTA+AGG | + | chr4.2:82993245-82993264 | MS.gene92593:CDS | 25.0% |
| ! | TTAAAATACAATCACGATTG+TGG | - | chr4.2:82992431-82992450 | None:intergenic | 25.0% |
| ! | TTGAAATATATATGCATGGT+GGG | + | chr4.2:82992018-82992037 | MS.gene92593:intron | 25.0% |
| !! | AAAAGACATGAATCTTTTTG+AGG | + | chr4.2:82993464-82993483 | MS.gene92593:CDS | 25.0% |
| !! | TTTGAAATATATATGCATGG+TGG | + | chr4.2:82992017-82992036 | MS.gene92593:intron | 25.0% |
| !!! | GTAGATTCTATTTTTCCATA+TGG | - | chr4.2:82993498-82993517 | None:intergenic | 25.0% |
| !!! | TTGAATGGCATTTTTTCTTT+TGG | + | chr4.2:82993378-82993397 | MS.gene92593:CDS | 25.0% |
| !!! | TTTAACACCCACTTTTTTAT+TGG | - | chr4.2:82992736-82992755 | None:intergenic | 25.0% |
| AAAAACCATTTATGTTCCAC+CGG | - | chr4.2:82992236-82992255 | None:intergenic | 30.0% | |
| AAAGTGGGTGTTAAAAAAAG+AGG | + | chr4.2:82992741-82992760 | MS.gene92593:intron | 30.0% | |
| AAGTGGGTGTTAAAAAAAGA+GGG | + | chr4.2:82992742-82992761 | MS.gene92593:intron | 30.0% | |
| ACAATTAAATGTGGAGAAGT+GGG | + | chr4.2:82992849-82992868 | MS.gene92593:intron | 30.0% | |
| ACATTTCTTAATTGCAGTTG+TGG | + | chr4.2:82992117-82992136 | MS.gene92593:intron | 30.0% | |
| ATAATAATGTGGAGGTCTTA+AGG | - | chr4.2:82993214-82993233 | None:intergenic | 30.0% | |
| ATGTAGGCAAATACAATTGA+TGG | - | chr4.2:82992298-82992317 | None:intergenic | 30.0% | |
| CTATAGCTCACAATTAAATG+TGG | + | chr4.2:82992840-82992859 | MS.gene92593:intron | 30.0% | |
| GATATTGCATGTTATATGCA+TGG | - | chr4.2:82992898-82992917 | None:intergenic | 30.0% | |
| GGAAAAATAGAATCTACTCT+AGG | + | chr4.2:82993501-82993520 | MS.gene92593:CDS | 30.0% | |
| TAAATTAAGGTGCAAAAGGA+AGG | - | chr4.2:82993023-82993042 | None:intergenic | 30.0% | |
| TCAATCCTTCATGTTTCATA+AGG | + | chr4.2:82993436-82993455 | MS.gene92593:CDS | 30.0% | |
| ! | AGCTTTTATAATACCATTGC+GGG | - | chr4.2:82992170-82992189 | None:intergenic | 30.0% |
| ! | CAGCTTTTATAATACCATTG+CGG | - | chr4.2:82992171-82992190 | None:intergenic | 30.0% |
| ! | TAGACAGTCTTATAATACTC+CGG | - | chr4.2:82992783-82992802 | None:intergenic | 30.0% |
| ! | TCAAAAATCCTTTAGGTTCT+GGG | - | chr4.2:82992344-82992363 | None:intergenic | 30.0% |
| ! | TTCAAAAATCCTTTAGGTTC+TGG | - | chr4.2:82992345-82992364 | None:intergenic | 30.0% |
| ! | TTTGAAATCTATGCAAGCAA+TGG | + | chr4.2:82992253-82992272 | MS.gene92593:intron | 30.0% |
| !! | CATTACTATTGTTTTGCCTA+TGG | - | chr4.2:82992467-82992486 | None:intergenic | 30.0% |
| !!! | AGAGAATTAGTTTTAGAGAG+TGG | - | chr4.2:82992636-82992655 | None:intergenic | 30.0% |
| !!! | TTTTTTTTTGTCAAGTAGCC+TGG | + | chr4.2:82992814-82992833 | MS.gene92593:intron | 30.0% |
| AAGATAAATTTAGCGGAGAG+AGG | - | chr4.2:82993686-82993705 | None:intergenic | 35.0% | |
| ACAAACTGAGTTAAGCTCAT+GGG | + | chr4.2:82992921-82992940 | MS.gene92593:intron | 35.0% | |
| AGGGTTCTTATTATTGTGAC+CGG | + | chr4.2:82992761-82992780 | MS.gene92593:intron | 35.0% | |
| AGTGATGTATTCTTGGCAAA+CGG | + | chr4.2:82993162-82993181 | MS.gene92593:CDS | 35.0% | |
| ATAGAAATGCATGTCACTGT+TGG | + | chr4.2:82991937-82991956 | MS.gene92593:CDS | 35.0% | |
| CAACATACCATTGGATGATT+TGG | + | chr4.2:82993620-82993639 | MS.gene92593:CDS | 35.0% | |
| CAATTAAATGTGGAGAAGTG+GGG | + | chr4.2:82992850-82992869 | MS.gene92593:intron | 35.0% | |
| CACAATTAAATGTGGAGAAG+TGG | + | chr4.2:82992848-82992867 | MS.gene92593:intron | 35.0% | |
| CACGATTGTGGTTAATATGA+AGG | - | chr4.2:82992419-82992438 | None:intergenic | 35.0% | |
| CAGTACAAGAGTCAATGAAA+CGG | + | chr4.2:82992609-82992628 | MS.gene92593:intron | 35.0% | |
| GCAGCACAAGATAAATTTAG+CGG | - | chr4.2:82993693-82993712 | None:intergenic | 35.0% | |
| GCAGTAGCATCATAATAATG+TGG | - | chr4.2:82993225-82993244 | None:intergenic | 35.0% | |
| GTAGCATCATAATAATGTGG+AGG | - | chr4.2:82993222-82993241 | None:intergenic | 35.0% | |
| TAATCTTCAAGTGACACCAT+TGG | + | chr4.2:82993560-82993579 | MS.gene92593:CDS | 35.0% | |
| TACAAACTGAGTTAAGCTCA+TGG | + | chr4.2:82992920-82992939 | MS.gene92593:intron | 35.0% | |
| TGACATTACAATCGCAATTG+CGG | + | chr4.2:82992375-82992394 | MS.gene92593:intron | 35.0% | |
| TGTGCAAGAGAAATGTAACT+TGG | + | chr4.2:82992494-82992513 | MS.gene92593:intron | 35.0% | |
| ! | AAAGGCCTTATGAAACATGA+AGG | - | chr4.2:82993444-82993463 | None:intergenic | 35.0% |
| ! | AATGTGCATCATAGAGGTTT+TGG | + | chr4.2:82991781-82991800 | MS.gene92593:CDS | 35.0% |
| ! | GCTTTTATAATACCATTGCG+GGG | - | chr4.2:82992169-82992188 | None:intergenic | 35.0% |
| ! | TGTATTCGCTTGCATTTTGA+CGG | + | chr4.2:82992198-82992217 | MS.gene92593:intron | 35.0% |
| ! | TGTTTCTGTAACCAAGTTGT+TGG | - | chr4.2:82991906-82991925 | None:intergenic | 35.0% |
| ! | TTAAGGAGAAAGGGTACAAT+AGG | - | chr4.2:82993197-82993216 | None:intergenic | 35.0% |
| ! | TTTGAGGCAAAATCTCCATA+TGG | + | chr4.2:82993480-82993499 | MS.gene92593:CDS | 35.0% |
| !! | CATGGTGGGTTTATTCAAAT+TGG | + | chr4.2:82992032-82992051 | MS.gene92593:intron | 35.0% |
| !! | TCAGTTCTAGAGCAATTGAA+TGG | + | chr4.2:82993363-82993382 | MS.gene92593:CDS | 35.0% |
| !!! | GAAGCTGGTTTTGTTAAGAA+GGG | + | chr4.2:82991811-82991830 | MS.gene92593:CDS | 35.0% |
| !!! | TGAAGCTGGTTTTGTTAAGA+AGG | + | chr4.2:82991810-82991829 | MS.gene92593:CDS | 35.0% |
| AAGTGCTTCAAAGCTTTCCT+GGG | + | chr4.2:82991863-82991882 | MS.gene92593:CDS | 40.0% | |
| AATTGCCGGTGGAACATAAA+TGG | + | chr4.2:82992228-82992247 | MS.gene92593:intron | 40.0% | |
| AATTGTGAGCTATAGCAACC+AGG | - | chr4.2:82992835-82992854 | None:intergenic | 40.0% | |
| AATTGTGTCCCAGAACCTAA+AGG | + | chr4.2:82992333-82992352 | MS.gene92593:intron | 40.0% | |
| ATTTCCAAAGTGTGAGAGCT+AGG | - | chr4.2:82992675-82992694 | None:intergenic | 40.0% | |
| CAAACTGAGTTAAGCTCATG+GGG | + | chr4.2:82992922-82992941 | MS.gene92593:intron | 40.0% | |
| CAATGGCATTGCAACAATTG+CGG | + | chr4.2:82992270-82992289 | MS.gene92593:intron | 40.0% | |
| GACATTACAATCGCAATTGC+GGG | + | chr4.2:82992376-82992395 | MS.gene92593:intron | 40.0% | |
| GCAAAAGCTCAACATACCAT+TGG | + | chr4.2:82993611-82993630 | MS.gene92593:CDS | 40.0% | |
| GTAGAGAATGTGCATCATAG+AGG | + | chr4.2:82991775-82991794 | MS.gene92593:CDS | 40.0% | |
| TAAATTTAGCGGAGAGAGGA+TGG | - | chr4.2:82993682-82993701 | None:intergenic | 40.0% | |
| TAATCGCAACATGAGACCAT+AGG | + | chr4.2:82992448-82992467 | MS.gene92593:intron | 40.0% | |
| TACATCACTCAGAGGAAACT+TGG | - | chr4.2:82993151-82993170 | None:intergenic | 40.0% | |
| TATGGATGCAGTTGTAGACT+TGG | - | chr4.2:82992549-82992568 | None:intergenic | 40.0% | |
| TCCCACACAACAAATTGTGA+TGG | - | chr4.2:82993540-82993559 | None:intergenic | 40.0% | |
| TCCTCTGAGTGATGTATTCT+TGG | + | chr4.2:82993155-82993174 | MS.gene92593:CDS | 40.0% | |
| TGCATGTTATATGCATGGGT+CGG | - | chr4.2:82992893-82992912 | None:intergenic | 40.0% | |
| ! | AAAGTGCTTCAAAGCTTTCC+TGG | + | chr4.2:82991862-82991881 | MS.gene92593:CDS | 40.0% |
| ! | AGTTTTCTCACAACTCCTGT+TGG | + | chr4.2:82993339-82993358 | MS.gene92593:CDS | 40.0% |
| ! | CATACCATTGGATGATTTGG+AGG | + | chr4.2:82993623-82993642 | MS.gene92593:CDS | 40.0% |
| ! | TAGCTCTCACACTTTGGAAA+TGG | + | chr4.2:82992674-82992693 | MS.gene92593:intron | 40.0% |
| ! | TTAACCTAGCTCTCACACTT+TGG | + | chr4.2:82992668-82992687 | MS.gene92593:intron | 40.0% |
| !! | GCCATCACAATTTGTTGTGT+GGG | + | chr4.2:82993536-82993555 | MS.gene92593:CDS | 40.0% |
| !! | TGCAAAAACCCTTTAGGTTG+CGG | - | chr4.2:82992144-82992163 | None:intergenic | 40.0% |
| !! | TGTCACTGTTGGTTTGAAAG+AGG | + | chr4.2:82991948-82991967 | MS.gene92593:CDS | 40.0% |
| AATGGATCCCACAAAAGTGG+TGG | + | chr4.2:82992692-82992711 | MS.gene92593:intron | 45.0% | |
| ATCACTCAGAGGAAACTTGG+AGG | - | chr4.2:82993148-82993167 | None:intergenic | 45.0% | |
| ATGGATCCCACAAAAGTGGT+GGG | + | chr4.2:82992693-82992712 | MS.gene92593:intron | 45.0% | |
| CATGTTATATGCATGGGTCG+GGG | - | chr4.2:82992891-82992910 | None:intergenic | 45.0% | |
| CTTCAGCAACTCCAACAACT+TGG | + | chr4.2:82991892-82991911 | MS.gene92593:CDS | 45.0% | |
| GCATGTTATATGCATGGGTC+GGG | - | chr4.2:82992892-82992911 | None:intergenic | 45.0% | |
| GCCAAGAATACATCACTCAG+AGG | - | chr4.2:82993159-82993178 | None:intergenic | 45.0% | |
| GGAAATGGATCCCACAAAAG+TGG | + | chr4.2:82992689-82992708 | MS.gene92593:intron | 45.0% | |
| GGGGATTGCAAAAACCCTTT+AGG | - | chr4.2:82992150-82992169 | None:intergenic | 45.0% | |
| GTGGAGGTCTTAAGGAGAAA+GGG | - | chr4.2:82993206-82993225 | None:intergenic | 45.0% | |
| TGCGGTTGCGATCAAAATGT+AGG | - | chr4.2:82992314-82992333 | None:intergenic | 45.0% | |
| TGCTCCTCCAAATCATCCAA+TGG | - | chr4.2:82993630-82993649 | None:intergenic | 45.0% | |
| TGTGGAGGTCTTAAGGAGAA+AGG | - | chr4.2:82993207-82993226 | None:intergenic | 45.0% | |
| ! | CTACTCTAGGCATTGTGAAG+AGG | + | chr4.2:82993514-82993533 | MS.gene92593:CDS | 45.0% |
| !! | ATATGCCCCACCACTTTTGT+GGG | - | chr4.2:82992702-82992721 | None:intergenic | 45.0% |
| !! | GGCCATCACAATTTGTTGTG+TGG | + | chr4.2:82993535-82993554 | MS.gene92593:CDS | 45.0% |
| !! | GGTTTTGGTGGAAATGAAGC+TGG | + | chr4.2:82991796-82991815 | MS.gene92593:CDS | 45.0% |
| !! | GTGCATCATAGAGGTTTTGG+TGG | + | chr4.2:82991784-82991803 | MS.gene92593:CDS | 45.0% |
| !! | TAGGTTCTGGGACACAATTG+CGG | - | chr4.2:82992332-82992351 | None:intergenic | 45.0% |
| !! | TATATGCCCCACCACTTTTG+TGG | - | chr4.2:82992703-82992722 | None:intergenic | 45.0% |
| !! | TGCTCTAGAACTGATCCAAC+AGG | - | chr4.2:82993357-82993376 | None:intergenic | 45.0% |
| !!! | TAATTTTAATTAATTTTACT+TGG | + | chr4.2:82991983-82992002 | MS.gene92593:intron | 5.0% |
| AGTTGTGGACCGCAACCTAA+AGG | + | chr4.2:82992132-82992151 | MS.gene92593:intron | 50.0% | |
| GGTGAGCATTAGAGAGACAC+AGG | + | chr4.2:82993653-82993672 | MS.gene92593:CDS | 50.0% | |
| GTTGTGGACCGCAACCTAAA+GGG | + | chr4.2:82992133-82992152 | MS.gene92593:intron | 50.0% | |
| TGGATCCCACAAAAGTGGTG+GGG | + | chr4.2:82992694-82992713 | MS.gene92593:intron | 50.0% | |
| TTGACGGCAACTGCAATTGC+CGG | + | chr4.2:82992214-82992233 | MS.gene92593:intron | 50.0% | |
| ! | GGATGATTTGGAGGAGCATG+TGG | + | chr4.2:82993632-82993651 | MS.gene92593:CDS | 50.0% |
| ! | GGTTTTTGCAATCCCCGCAA+TGG | + | chr4.2:82992154-82992173 | MS.gene92593:intron | 50.0% |
| !! | AGTTGCTGAAGAGTGTTCCC+AGG | - | chr4.2:82991883-82991902 | None:intergenic | 50.0% |
| ! | ATGTGGAGAAGTGGGGTGTC+CGG | + | chr4.2:82992857-82992876 | MS.gene92593:intron | 55.0% |
| ACGGCAACTGCAATTGCCGG+TGG | + | chr4.2:82992217-82992236 | MS.gene92593:intron | 60.0% | |
| ATGGGTCGGGGTTCAAACCC+CGG | - | chr4.2:82992879-82992898 | None:intergenic | 60.0% | |
| ! | TGTGGAGAAGTGGGGTGTCC+GGG | + | chr4.2:82992858-82992877 | MS.gene92593:intron | 60.0% |
| ! | GTGGAGAAGTGGGGTGTCCG+GGG | + | chr4.2:82992859-82992878 | MS.gene92593:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 82991766 | 82993728 | 82991766 | ID=MS.gene92593 |
| chr4.2 | mRNA | 82991766 | 82993728 | 82991766 | ID=MS.gene92593.t1;Parent=MS.gene92593 |
| chr4.2 | exon | 82991766 | 82991969 | 82991766 | ID=MS.gene92593.t1.exon1;Parent=MS.gene92593.t1 |
| chr4.2 | CDS | 82991766 | 82991969 | 82991766 | ID=cds.MS.gene92593.t1;Parent=MS.gene92593.t1 |
| chr4.2 | exon | 82993117 | 82993728 | 82993117 | ID=MS.gene92593.t1.exon2;Parent=MS.gene92593.t1 |
| chr4.2 | CDS | 82993117 | 82993728 | 82993117 | ID=cds.MS.gene92593.t1;Parent=MS.gene92593.t1 |
| Gene Sequence |
| Protein sequence |
