Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049853.t1 | KEH26597.1 | 72.6 | 124 | 19 | 2 | 1 | 109 | 1 | 124 | 1.00E-42 | 182.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049853.t1 | A0A072UAC5 | 72.6 | 124 | 19 | 2 | 1 | 109 | 1 | 124 | 7.2e-43 | 182.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene054174 | 0.805534 | 1.27E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene054175 | 0.809194 | 2.13E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene055058 | 0.833691 | 4.61E-56 | -1.69E-46 |
| MS.gene049853 | MS.gene059276 | 0.800525 | 1.38E-48 | -1.69E-46 |
| MS.gene049853 | MS.gene063846 | 0.835765 | 1.39E-56 | -1.69E-46 |
| MS.gene049853 | MS.gene064192 | 0.816255 | 6.08E-52 | -1.69E-46 |
| MS.gene049853 | MS.gene064600 | 0.811541 | 6.65E-51 | -1.69E-46 |
| MS.gene049853 | MS.gene064701 | 0.809578 | 1.77E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene06633 | 0.801846 | 7.43E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene066752 | 0.810969 | 8.85E-51 | -1.69E-46 |
| MS.gene049853 | MS.gene068185 | 0.801145 | 1.03E-48 | -1.69E-46 |
| MS.gene049853 | MS.gene068453 | 0.825841 | 3.76E-54 | -1.69E-46 |
| MS.gene049853 | MS.gene068494 | 0.80556 | 1.26E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene069223 | 0.800071 | 1.71E-48 | -1.69E-46 |
| MS.gene049853 | MS.gene069271 | 0.858182 | 9.82E-63 | -1.69E-46 |
| MS.gene049853 | MS.gene069275 | 0.823534 | 1.32E-53 | -1.69E-46 |
| MS.gene049853 | MS.gene071330 | 0.832835 | 7.54E-56 | -1.69E-46 |
| MS.gene049853 | MS.gene071806 | 0.806212 | 9.18E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene073471 | 0.813117 | 3.01E-51 | -1.69E-46 |
| MS.gene049853 | MS.gene09504 | 0.829733 | 4.36E-55 | -1.69E-46 |
| MS.gene049853 | MS.gene20657 | 0.864151 | 1.49E-64 | -1.69E-46 |
| MS.gene049853 | MS.gene24211 | 0.839754 | 1.31E-57 | -1.69E-46 |
| MS.gene049853 | MS.gene25539 | 0.821246 | 4.47E-53 | -1.69E-46 |
| MS.gene049853 | MS.gene26056 | 0.841733 | 3.97E-58 | -1.69E-46 |
| MS.gene049853 | MS.gene27717 | 0.82284 | 1.91E-53 | -1.69E-46 |
| MS.gene049853 | MS.gene27720 | 0.86319 | 2.97E-64 | -1.69E-46 |
| MS.gene049853 | MS.gene28203 | 0.834599 | 2.73E-56 | -1.69E-46 |
| MS.gene049853 | MS.gene29253 | 0.827783 | 1.29E-54 | -1.69E-46 |
| MS.gene049853 | MS.gene29654 | 0.806049 | 9.93E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene30073 | 0.856449 | 3.19E-62 | -1.69E-46 |
| MS.gene049853 | MS.gene30139 | 0.823857 | 1.11E-53 | -1.69E-46 |
| MS.gene049853 | MS.gene30580 | 0.8605 | 1.98E-63 | -1.69E-46 |
| MS.gene049853 | MS.gene34615 | 0.873012 | 2.04E-67 | -1.69E-46 |
| MS.gene049853 | MS.gene34666 | 0.845965 | 2.92E-59 | -1.69E-46 |
| MS.gene049853 | MS.gene38429 | 0.820078 | 8.29E-53 | -1.69E-46 |
| MS.gene049853 | MS.gene38444 | 0.832328 | 1.01E-55 | -1.69E-46 |
| MS.gene049853 | MS.gene38850 | 0.873764 | 1.14E-67 | -1.69E-46 |
| MS.gene049853 | MS.gene41250 | 0.802739 | 4.86E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene41507 | 0.818315 | 2.09E-52 | -1.69E-46 |
| MS.gene049853 | MS.gene41508 | 0.834304 | 3.24E-56 | -1.69E-46 |
| MS.gene049853 | MS.gene41509 | 0.807731 | 4.38E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene42573 | 0.836767 | 7.71E-57 | -1.69E-46 |
| MS.gene049853 | MS.gene42887 | 0.893419 | 6.40E-75 | -1.69E-46 |
| MS.gene049853 | MS.gene42891 | 0.893031 | 9.17E-75 | -1.69E-46 |
| MS.gene049853 | MS.gene44574 | 0.825374 | 4.85E-54 | -1.69E-46 |
| MS.gene049853 | MS.gene44575 | 0.833891 | 4.11E-56 | -1.69E-46 |
| MS.gene049853 | MS.gene44743 | 0.803091 | 4.11E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene45794 | 0.835458 | 1.66E-56 | -1.69E-46 |
| MS.gene049853 | MS.gene47943 | 0.811532 | 6.68E-51 | -1.69E-46 |
| MS.gene049853 | MS.gene48858 | 0.810248 | 1.27E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene50755 | 0.802768 | 4.80E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene51189 | 0.800024 | 1.75E-48 | -1.69E-46 |
| MS.gene049853 | MS.gene51252 | 0.843569 | 1.29E-58 | -1.69E-46 |
| MS.gene049853 | MS.gene54517 | 0.802421 | 5.66E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene54921 | 0.860554 | 1.90E-63 | -1.69E-46 |
| MS.gene049853 | MS.gene56618 | 0.81431 | 1.64E-51 | -1.69E-46 |
| MS.gene049853 | MS.gene57443 | 0.817094 | 3.94E-52 | -1.69E-46 |
| MS.gene049853 | MS.gene59780 | 0.902271 | 1.15E-78 | -1.69E-46 |
| MS.gene049853 | MS.gene60727 | 0.81074 | 9.92E-51 | -1.69E-46 |
| MS.gene049853 | MS.gene61742 | 0.828873 | 7.06E-55 | -1.69E-46 |
| MS.gene049853 | MS.gene61898 | 0.805624 | 1.22E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene62748 | 0.868719 | 5.30E-66 | -1.69E-46 |
| MS.gene049853 | MS.gene63141 | 0.830126 | 3.50E-55 | -1.69E-46 |
| MS.gene049853 | MS.gene63142 | 0.83946 | 1.56E-57 | -1.69E-46 |
| MS.gene049853 | MS.gene65816 | 0.831651 | 1.48E-55 | -1.69E-46 |
| MS.gene049853 | MS.gene66277 | 0.810635 | 1.05E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene67182 | 0.833592 | 4.88E-56 | -1.69E-46 |
| MS.gene049853 | MS.gene69102 | 0.815437 | 9.25E-52 | -1.69E-46 |
| MS.gene049853 | MS.gene69594 | 0.82581 | 3.83E-54 | -1.69E-46 |
| MS.gene049853 | MS.gene72205 | 0.808351 | 3.23E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene73540 | 0.844026 | 9.75E-59 | -1.69E-46 |
| MS.gene049853 | MS.gene76612 | 0.803772 | 2.97E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene78647 | 0.814912 | 1.21E-51 | -1.69E-46 |
| MS.gene049853 | MS.gene79147 | 0.8101 | 1.36E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene79824 | 0.863589 | 2.23E-64 | -1.69E-46 |
| MS.gene049853 | MS.gene81140 | 0.817214 | 3.70E-52 | -1.69E-46 |
| MS.gene049853 | MS.gene81193 | 0.817843 | 2.67E-52 | -1.69E-46 |
| MS.gene049853 | MS.gene82663 | 0.809482 | 1.85E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene82668 | 0.865096 | 7.57E-65 | -1.69E-46 |
| MS.gene049853 | MS.gene82669 | 0.831689 | 1.45E-55 | -1.69E-46 |
| MS.gene049853 | MS.gene82682 | 0.804641 | 1.96E-49 | -1.69E-46 |
| MS.gene049853 | MS.gene82962 | 0.800352 | 1.50E-48 | -1.69E-46 |
| MS.gene049853 | MS.gene83166 | 0.834956 | 2.22E-56 | -1.69E-46 |
| MS.gene049853 | MS.gene84001 | 0.836864 | 7.29E-57 | -1.69E-46 |
| MS.gene049853 | MS.gene84968 | 0.826855 | 2.16E-54 | -1.69E-46 |
| MS.gene049853 | MS.gene85079 | 0.813809 | 2.12E-51 | -1.69E-46 |
| MS.gene049853 | MS.gene85361 | 0.849787 | 2.58E-60 | -1.69E-46 |
| MS.gene049853 | MS.gene85759 | 0.818903 | 1.54E-52 | -1.69E-46 |
| MS.gene049853 | MS.gene86256 | 0.829654 | 4.56E-55 | -1.69E-46 |
| MS.gene049853 | MS.gene88533 | 0.82767 | 1.38E-54 | -1.69E-46 |
| MS.gene049853 | MS.gene88539 | 0.854937 | 8.82E-62 | -1.69E-46 |
| MS.gene049853 | MS.gene88548 | 0.840177 | 1.02E-57 | -1.69E-46 |
| MS.gene049853 | MS.gene91451 | 0.87223 | 3.73E-67 | -1.69E-46 |
| MS.gene049853 | MS.gene92276 | 0.821091 | 4.85E-53 | -1.69E-46 |
| MS.gene049853 | MS.gene92593 | 0.801142 | 1.04E-48 | -1.69E-46 |
| MS.gene049853 | MS.gene93832 | 0.807717 | 4.41E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene95221 | 0.809138 | 2.19E-50 | -1.69E-46 |
| MS.gene049853 | MS.gene98550 | 0.890159 | 1.27E-73 | -1.69E-46 |
| MS.gene049853 | MS.gene98673 | 0.890481 | 9.47E-74 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene049853.t1 | MTR_6g465600 | 72.581 | 124 | 19 | 2 | 1 | 109 | 1 | 124 | 8.16e-57 | 178 |
| MS.gene049853.t1 | MTR_1g052720 | 47.581 | 124 | 47 | 3 | 1 | 109 | 1 | 121 | 1.16e-30 | 110 |
| MS.gene049853.t1 | MTR_7g050355 | 50.000 | 112 | 41 | 2 | 1 | 97 | 1 | 112 | 1.72e-29 | 110 |
| MS.gene049853.t1 | MTR_0246s0040 | 62.319 | 69 | 26 | 0 | 41 | 109 | 82 | 150 | 7.21e-27 | 100 |
| MS.gene049853.t1 | MTR_4g082235 | 55.294 | 85 | 25 | 2 | 1 | 72 | 1 | 85 | 3.72e-22 | 87.0 |
| MS.gene049853.t1 | MTR_0091s0080 | 51.515 | 66 | 32 | 0 | 42 | 107 | 256 | 321 | 3.58e-18 | 78.6 |
| MS.gene049853.t1 | MTR_4g117740 | 47.619 | 63 | 33 | 0 | 45 | 107 | 65 | 127 | 1.84e-16 | 71.6 |
| MS.gene049853.t1 | MTR_5g075200 | 43.478 | 69 | 39 | 0 | 40 | 108 | 62 | 130 | 9.65e-15 | 67.0 |
| MS.gene049853.t1 | MTR_2g038740 | 44.444 | 63 | 35 | 0 | 45 | 107 | 54 | 116 | 7.08e-14 | 66.2 |
| MS.gene049853.t1 | MTR_5g066660 | 40.789 | 76 | 43 | 1 | 36 | 109 | 43 | 118 | 3.12e-13 | 63.9 |
| MS.gene049853.t1 | MTR_2g100360 | 43.077 | 65 | 37 | 0 | 45 | 109 | 54 | 118 | 1.15e-12 | 62.4 |
| MS.gene049853.t1 | MTR_4g062370 | 39.683 | 63 | 38 | 0 | 45 | 107 | 58 | 120 | 2.25e-12 | 62.0 |
| MS.gene049853.t1 | MTR_8g085330 | 40.678 | 59 | 35 | 0 | 50 | 108 | 85 | 143 | 4.21e-12 | 60.8 |
| MS.gene049853.t1 | MTR_1g105765 | 39.683 | 63 | 38 | 0 | 45 | 107 | 55 | 117 | 4.72e-12 | 60.8 |
| MS.gene049853.t1 | MTR_3g070250 | 39.062 | 64 | 39 | 0 | 45 | 108 | 59 | 122 | 8.73e-12 | 60.1 |
| MS.gene049853.t1 | MTR_1g105780 | 38.095 | 63 | 39 | 0 | 45 | 107 | 55 | 117 | 8.81e-12 | 60.1 |
| MS.gene049853.t1 | MTR_8g064930 | 55.814 | 43 | 19 | 0 | 42 | 84 | 8 | 50 | 1.58e-11 | 55.1 |
| MS.gene049853.t1 | MTR_4g032560 | 40.000 | 65 | 39 | 0 | 44 | 108 | 82 | 146 | 2.10e-11 | 58.9 |
| MS.gene049853.t1 | MTR_4g032580 | 40.000 | 65 | 39 | 0 | 44 | 108 | 82 | 146 | 2.28e-11 | 58.9 |
| MS.gene049853.t1 | MTR_1g084880 | 39.062 | 64 | 39 | 0 | 45 | 108 | 54 | 117 | 2.36e-11 | 58.9 |
| MS.gene049853.t1 | MTR_3g048970 | 39.062 | 64 | 39 | 0 | 45 | 108 | 54 | 117 | 3.53e-11 | 58.2 |
| MS.gene049853.t1 | MTR_7g110090 | 40.000 | 65 | 39 | 0 | 44 | 108 | 53 | 117 | 6.15e-11 | 57.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 25 sgRNAs with CRISPR-Local
Find 87 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGTAAGCAATGGAAAATTT+TGG | 0.183630 | 4.4:-43944628 | None:intergenic |
| GCTTGCTTTGCAAGAGGTTT+TGG | 0.191388 | 4.4:-43943200 | MS.gene049853:CDS |
| CAGAGGTGTTAGGAGGGATT+TGG | 0.326630 | 4.4:-43943608 | MS.gene049853:intron |
| TGGCATATTAACTGGTGGTT+GGG | 0.398772 | 4.4:-43943054 | MS.gene049853:CDS |
| GTGGGATTGACAGAGGTGTT+AGG | 0.418369 | 4.4:-43943618 | MS.gene049853:CDS |
| ATGGCATATTAACTGGTGGT+TGG | 0.434678 | 4.4:-43943055 | MS.gene049853:CDS |
| CTGCCTGCTTGCTTTGCAAG+AGG | 0.447643 | 4.4:-43943206 | MS.gene049853:CDS |
| TGATCACGCAGCATGACATA+TGG | 0.478460 | 4.4:+43943164 | None:intergenic |
| ACCAACAGCCTCACGATCCT+TGG | 0.494590 | 4.4:+43944588 | None:intergenic |
| GGATTGACAGAGGTGTTAGG+AGG | 0.526695 | 4.4:-43943615 | MS.gene049853:CDS |
| AAACCTCTTGCAAAGCAAGC+AGG | 0.559763 | 4.4:+43943203 | None:intergenic |
| GATTGACAGAGGTGTTAGGA+GGG | 0.565582 | 4.4:-43943614 | MS.gene049853:CDS |
| TCATAACCACAATGAGATTG+AGG | 0.578617 | 4.4:-43943144 | MS.gene049853:CDS |
| ATTAACTGGTGGTTGGGTCA+CGG | 0.583188 | 4.4:-43943048 | MS.gene049853:CDS |
| GGTGCTATATGTTTGATGAA+AGG | 0.589079 | 4.4:-43944568 | MS.gene049853:intron |
| TCAACAGTTACAGGCACTGA+TGG | 0.591514 | 4.4:-43943640 | MS.gene049853:intron |
| CAGTTACAGGCACTGATGGT+GGG | 0.592227 | 4.4:-43943636 | MS.gene049853:CDS |
| ACAGTTACAGGCACTGATGG+TGG | 0.593464 | 4.4:-43943637 | MS.gene049853:intron |
| TTGATGTTTGTGCAGCGTAA+GGG | 0.593593 | 4.4:-43943233 | MS.gene049853:intron |
| GCCAAGGATCGTGAGGCTGT+TGG | 0.611772 | 4.4:-43944589 | MS.gene049853:CDS |
| GAACTTCACAATGTATGCCA+AGG | 0.644450 | 4.4:-43944605 | MS.gene049853:CDS |
| AATGTATGCCAAGGATCGTG+AGG | 0.653339 | 4.4:-43944596 | MS.gene049853:CDS |
| TGGCAACCTCAATCTCATTG+TGG | 0.670176 | 4.4:+43943138 | None:intergenic |
| TGTTTGTGCAGCGTAAGGGA+AGG | 0.701195 | 4.4:-43943229 | MS.gene049853:intron |
| ACTGATGGTGGGATTGACAG+AGG | 0.753991 | 4.4:-43943625 | MS.gene049853:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGTTTATTCATCTAATATAT+TGG | - | chr4.4:43943675-43943694 | MS.gene049853:intron | 15.0% |
| !! | ATGAAGAATAATAAAAGAAT+AGG | - | chr4.4:43944228-43944247 | MS.gene049853:intron | 15.0% |
| !!! | TCATTTTTGAAAAACTTTTA+TGG | - | chr4.4:43944576-43944595 | MS.gene049853:CDS | 15.0% |
| !! | AAGGTATATGTTATTATGTT+AGG | + | chr4.4:43943919-43943938 | None:intergenic | 20.0% |
| !! | AATAATAAAAGAATAGGTCT+GGG | - | chr4.4:43944234-43944253 | MS.gene049853:intron | 20.0% |
| !! | AATCTTAGTTTCTTATCTAT+TGG | - | chr4.4:43944285-43944304 | MS.gene049853:intron | 20.0% |
| !! | ATTCATCTAATATATTGGAA+AGG | - | chr4.4:43943680-43943699 | MS.gene049853:intron | 20.0% |
| !! | ATTGTTGAATATTCTATGTA+GGG | + | chr4.4:43943338-43943357 | None:intergenic | 20.0% |
| !! | TAATACGTAATTATGATGAA+AGG | - | chr4.4:43943377-43943396 | MS.gene049853:intron | 20.0% |
| !! | TTCAACAAATAAAGTTCTTA+AGG | + | chr4.4:43943112-43943131 | None:intergenic | 20.0% |
| !!! | GTTTTATTACAGAGTTATTT+TGG | + | chr4.4:43943805-43943824 | None:intergenic | 20.0% |
| ! | ACACTAACAGCAATAAATAA+AGG | + | chr4.4:43943963-43943982 | None:intergenic | 25.0% |
| ! | ATAGCTTCACAATTACAAAT+AGG | + | chr4.4:43943177-43943196 | None:intergenic | 25.0% |
| ! | CATGATTATTCTTTAAACCA+TGG | - | chr4.4:43944372-43944391 | MS.gene049853:intron | 25.0% |
| ! | CATTGTTGAATATTCTATGT+AGG | + | chr4.4:43943339-43943358 | None:intergenic | 25.0% |
| ! | GAATAATAAAAGAATAGGTC+TGG | - | chr4.4:43944233-43944252 | MS.gene049853:intron | 25.0% |
| ! | GCTTGAAAATGAAATTACAT+AGG | - | chr4.4:43943727-43943746 | MS.gene049853:intron | 25.0% |
| ! | TTGATGTCTTTATCATAACT+GGG | - | chr4.4:43943431-43943450 | MS.gene049853:intron | 25.0% |
| ! | TTTGATGTCTTTATCATAAC+TGG | - | chr4.4:43943430-43943449 | MS.gene049853:intron | 25.0% |
| !! | AACTTTTATGGCATATTAAC+TGG | - | chr4.4:43944588-43944607 | MS.gene049853:CDS | 25.0% |
| !! | GTAATTATGATGAAAGGTAT+TGG | - | chr4.4:43943383-43943402 | MS.gene049853:intron | 25.0% |
| !! | TGCTATTTACATTTGAACTA+TGG | - | chr4.4:43943463-43943482 | MS.gene049853:intron | 25.0% |
| AACAATGATATCATAACCCT+CGG | - | chr4.4:43943352-43943371 | MS.gene049853:intron | 30.0% | |
| ATAATTACGTATTAAGCCGA+GGG | + | chr4.4:43943371-43943390 | None:intergenic | 30.0% | |
| ATACAAACACACAACACTTA+AGG | + | chr4.4:43943938-43943957 | None:intergenic | 30.0% | |
| ATTATTCTTTAAACCATGGC+AGG | - | chr4.4:43944376-43944395 | MS.gene049853:intron | 30.0% | |
| CATGTAAAGACTTTAACATC+TGG | - | chr4.4:43944330-43944349 | MS.gene049853:intron | 30.0% | |
| GAAAATGAAATTACATAGGC+TGG | - | chr4.4:43943731-43943750 | MS.gene049853:intron | 30.0% | |
| GTTGCCATTGAAAAAAAGAA+CGG | - | chr4.4:43944528-43944547 | MS.gene049853:intron | 30.0% | |
| TAAAGACTTTAACATCTGGT+TGG | - | chr4.4:43944334-43944353 | MS.gene049853:intron | 30.0% | |
| TGATGTCTTTATCATAACTG+GGG | - | chr4.4:43943432-43943451 | MS.gene049853:intron | 30.0% | |
| TTATGAGCACATTAAAATCC+CGG | + | chr4.4:43943624-43943643 | None:intergenic | 30.0% | |
| TTGCCATTGAAAAAAAGAAC+GGG | - | chr4.4:43944529-43944548 | MS.gene049853:intron | 30.0% | |
| ! | TTTTATGGCATATTAACTGG+TGG | - | chr4.4:43944591-43944610 | MS.gene049853:CDS | 30.0% |
| !! | ATGTTTTCTATAGTTCTACC+GGG | - | chr4.4:43943603-43943622 | MS.gene049853:intron | 30.0% |
| !! | GATGTTTTCTATAGTTCTAC+CGG | - | chr4.4:43943602-43943621 | MS.gene049853:intron | 30.0% |
| !!! | TTTCCCGTTCTTTTTTTCAA+TGG | + | chr4.4:43944535-43944554 | None:intergenic | 30.0% |
| CATAATTACGTATTAAGCCG+AGG | + | chr4.4:43943372-43943391 | None:intergenic | 35.0% | |
| CATGAATTAATTTCCTGCCA+TGG | + | chr4.4:43944392-43944411 | None:intergenic | 35.0% | |
| CTATACAGTTAGAAGTCAAC+TGG | + | chr4.4:43943882-43943901 | None:intergenic | 35.0% | |
| GTAGCAAGTAAATCAACTCA+CGG | + | chr4.4:43944107-43944126 | None:intergenic | 35.0% | |
| GTGTTTCTTTATCCCATCAA+AGG | - | chr4.4:43943245-43943264 | MS.gene049853:intron | 35.0% | |
| TCACAATTACAAATAGGTGC+AGG | + | chr4.4:43943171-43943190 | None:intergenic | 35.0% | |
| TCATAACCACAATGAGATTG+AGG | - | chr4.4:43944506-43944525 | MS.gene049853:intron | 35.0% | |
| TGTTTGCTTGACATCATGTT+TGG | - | chr4.4:43944187-43944206 | MS.gene049853:intron | 35.0% | |
| ! | AAGTCTATTTTGCTGATGGA+TGG | - | chr4.4:43944553-43944572 | MS.gene049853:intron | 35.0% |
| ! | GGTGCTATATGTTTGATGAA+AGG | - | chr4.4:43943082-43943101 | MS.gene049853:CDS | 35.0% |
| ! | TTTTTCCTGTCAACAGTTAC+AGG | - | chr4.4:43944001-43944020 | MS.gene049853:intron | 35.0% |
| !! | AGCATAAGTCTTATTCCATG+TGG | + | chr4.4:43944084-43944103 | None:intergenic | 35.0% |
| !! | ATGCTGCTTTGTTTAGTGTT+TGG | - | chr4.4:43943501-43943520 | MS.gene049853:intron | 35.0% |
| !! | GGTTTGTGTTTGTTGTTCTT+TGG | - | chr4.4:43943296-43943315 | MS.gene049853:intron | 35.0% |
| ATGGCATATTAACTGGTGGT+TGG | - | chr4.4:43944595-43944614 | MS.gene049853:CDS | 40.0% | |
| GAACTTCACAATGTATGCCA+AGG | - | chr4.4:43943045-43943064 | MS.gene049853:CDS | 40.0% | |
| GTGAATGCAGAATCTCAAAC+AGG | - | chr4.4:43943269-43943288 | MS.gene049853:intron | 40.0% | |
| TCTGCATTCACACCTTTGAT+GGG | + | chr4.4:43943260-43943279 | None:intergenic | 40.0% | |
| TGGCATATTAACTGGTGGTT+GGG | - | chr4.4:43944596-43944615 | MS.gene049853:CDS | 40.0% | |
| TTCTGCATTCACACCTTTGA+TGG | + | chr4.4:43943261-43943280 | None:intergenic | 40.0% | |
| TTGATGTTTGTGCAGCGTAA+GGG | - | chr4.4:43944417-43944436 | MS.gene049853:intron | 40.0% | |
| TTTGATGTTTGTGCAGCGTA+AGG | - | chr4.4:43944416-43944435 | MS.gene049853:intron | 40.0% | |
| ! | AATAGGTCTGGGATACTACA+TGG | - | chr4.4:43944245-43944264 | MS.gene049853:intron | 40.0% |
| ! | GGGAAAGTCTATTTTGCTGA+TGG | - | chr4.4:43944549-43944568 | MS.gene049853:intron | 40.0% |
| !!! | AGAGGTTTTGGTTTGCAAGT+TGG | - | chr4.4:43944462-43944481 | MS.gene049853:intron | 40.0% |
| AAACCTCTTGCAAAGCAAGC+AGG | + | chr4.4:43944450-43944469 | None:intergenic | 45.0% | |
| AATGTATGCCAAGGATCGTG+AGG | - | chr4.4:43943054-43943073 | MS.gene049853:CDS | 45.0% | |
| ACATCTGGTTGGAGTAGTCA+TGG | - | chr4.4:43944345-43944364 | MS.gene049853:intron | 45.0% | |
| ATTAACTGGTGGTTGGGTCA+CGG | - | chr4.4:43944602-43944621 | MS.gene049853:CDS | 45.0% | |
| CATCTGGTTGGAGTAGTCAT+GGG | - | chr4.4:43944346-43944365 | MS.gene049853:intron | 45.0% | |
| GCAGAATCTCAAACAGGAAG+TGG | - | chr4.4:43943275-43943294 | MS.gene049853:intron | 45.0% | |
| GGTGCAGGTTAAGAAAACTC+AGG | + | chr4.4:43943156-43943175 | None:intergenic | 45.0% | |
| TGATCACGCAGCATGACATA+TGG | + | chr4.4:43944489-43944508 | None:intergenic | 45.0% | |
| TGGCAACCTCAATCTCATTG+TGG | + | chr4.4:43944515-43944534 | None:intergenic | 45.0% | |
| ! | GCTTGCTTTGCAAGAGGTTT+TGG | - | chr4.4:43944450-43944469 | MS.gene049853:intron | 45.0% |
| !! | ATTCCATGTGGAAAGTGCTG+AGG | + | chr4.4:43944072-43944091 | None:intergenic | 45.0% |
| !! | GATTGACAGAGGTGTTAGGA+GGG | - | chr4.4:43944036-43944055 | MS.gene049853:intron | 45.0% |
| !! | TCAACAGTTACAGGCACTGA+TGG | - | chr4.4:43944010-43944029 | MS.gene049853:intron | 45.0% |
| CAGTGCCTGTAACTGTTGAC+AGG | + | chr4.4:43944009-43944028 | None:intergenic | 50.0% | |
| TAGCCTCAGCACTTTCCACA+TGG | - | chr4.4:43944066-43944085 | MS.gene049853:intron | 50.0% | |
| TGTTTGTGCAGCGTAAGGGA+AGG | - | chr4.4:43944421-43944440 | MS.gene049853:intron | 50.0% | |
| !! | ACAGTTACAGGCACTGATGG+TGG | - | chr4.4:43944013-43944032 | MS.gene049853:intron | 50.0% |
| !! | ACTGATGGTGGGATTGACAG+AGG | - | chr4.4:43944025-43944044 | MS.gene049853:intron | 50.0% |
| !! | CAGAGGTGTTAGGAGGGATT+TGG | - | chr4.4:43944042-43944061 | MS.gene049853:intron | 50.0% |
| !! | CAGTTACAGGCACTGATGGT+GGG | - | chr4.4:43944014-43944033 | MS.gene049853:intron | 50.0% |
| !! | GGATTGACAGAGGTGTTAGG+AGG | - | chr4.4:43944035-43944054 | MS.gene049853:intron | 50.0% |
| !! | GTGGGATTGACAGAGGTGTT+AGG | - | chr4.4:43944032-43944051 | MS.gene049853:intron | 50.0% |
| ACCAACAGCCTCACGATCCT+TGG | + | chr4.4:43943065-43943084 | None:intergenic | 55.0% | |
| CTGCCTGCTTGCTTTGCAAG+AGG | - | chr4.4:43944444-43944463 | MS.gene049853:intron | 55.0% | |
| GCCAAGGATCGTGAGGCTGT+TGG | - | chr4.4:43943061-43943080 | MS.gene049853:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.4 | gene | 43943031 | 43944641 | 43943031 | ID=MS.gene049853 |
| chr4.4 | mRNA | 43943031 | 43944641 | 43943031 | ID=MS.gene049853.t1;Parent=MS.gene049853 |
| chr4.4 | exon | 43944569 | 43944641 | 43944569 | ID=MS.gene049853.t1.exon1;Parent=MS.gene049853.t1 |
| chr4.4 | CDS | 43944569 | 43944641 | 43944569 | ID=cds.MS.gene049853.t1;Parent=MS.gene049853.t1 |
| chr4.4 | exon | 43943609 | 43943655 | 43943609 | ID=MS.gene049853.t1.exon2;Parent=MS.gene049853.t1 |
| chr4.4 | CDS | 43943609 | 43943655 | 43943609 | ID=cds.MS.gene049853.t1;Parent=MS.gene049853.t1 |
| chr4.4 | exon | 43943031 | 43943240 | 43943031 | ID=MS.gene049853.t1.exon3;Parent=MS.gene049853.t1 |
| chr4.4 | CDS | 43943031 | 43943240 | 43943031 | ID=cds.MS.gene049853.t1;Parent=MS.gene049853.t1 |
| Gene Sequence |
| Protein sequence |
