AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92722

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92722.t1 MTR_3g030770 94.273 227 13 0 1 227 1 227 1.41e-161 446
MS.gene92722.t1 MTR_1g108510 92.952 227 16 0 1 227 1 227 7.81e-160 441
MS.gene92722.t1 MTR_2g093190 83.700 227 37 0 1 227 1 227 2.39e-142 397
MS.gene92722.t1 MTR_1g108580 81.057 227 43 0 1 227 1 227 6.76e-138 386
MS.gene92722.t1 MTR_1g105920 74.661 221 46 2 1 213 1 219 7.41e-115 328
MS.gene92722.t1 MTR_8g043650 70.130 231 59 2 1 223 1 229 1.52e-110 317
MS.gene92722.t1 MTR_1g105910 67.234 235 59 3 1 227 1 225 1.40e-108 312
MS.gene92722.t1 MTR_1g012570 69.683 221 57 2 1 213 1 219 4.18e-108 311
MS.gene92722.t1 MTR_2g030740 70.136 221 56 2 1 213 1 219 4.66e-108 311
MS.gene92722.t1 MTR_3g052920 69.231 221 58 2 1 213 1 219 3.24e-106 306
MS.gene92722.t1 MTR_1g075600 63.404 235 68 3 1 227 1 225 4.70e-99 288
MS.gene92722.t1 MTR_0121s0080 62.979 235 69 3 1 227 1 225 2.93e-97 283
MS.gene92722.t1 MTR_1g077360 61.277 235 73 3 1 227 1 225 3.29e-96 281
MS.gene92722.t1 MTR_5g053390 61.702 235 72 3 1 227 1 225 2.80e-95 278
MS.gene92722.t1 MTR_5g045560 60.851 235 74 3 1 227 1 225 1.34e-94 277
MS.gene92722.t1 MTR_1g105905 64.679 218 59 3 18 227 1 208 1.83e-94 276
MS.gene92722.t1 MTR_3g052870 67.136 213 57 3 1 213 1 200 3.29e-94 275
MS.gene92722.t1 MTR_5g055100 60.000 235 76 3 1 227 1 225 7.37e-91 267
MS.gene92722.t1 MTR_2g085280 59.149 235 78 3 1 227 1 225 4.82e-90 265
MS.gene92722.t1 MTR_2g085250 59.912 227 81 2 1 219 1 225 8.24e-90 265
MS.gene92722.t1 MTR_1g106070 70.879 182 45 1 1 174 1 182 1.99e-89 262
MS.gene92722.t1 MTR_0121s0100 86.364 132 18 0 1 132 1 132 1.45e-78 232
MS.gene92722.t1 MTR_7g062350 59.276 221 71 4 16 227 27 237 2.03e-78 236
MS.gene92722.t1 MTR_3g030780 69.697 132 40 0 1 132 1 132 2.72e-62 191
MS.gene92722.t1 MTR_3g080940 54.717 159 72 0 9 167 9 167 5.83e-59 185
MS.gene92722.t1 MTR_1g075570 55.618 178 57 2 18 187 1 164 3.91e-52 166
MS.gene92722.t1 MTR_3g067910 61.165 103 40 0 21 123 2 104 2.53e-39 132
MS.gene92722.t1 MTR_8g086290 41.212 165 87 2 5 166 8 165 7.28e-38 130
MS.gene92722.t1 MTR_2g105290 38.182 165 92 2 5 166 8 165 6.53e-35 123
MS.gene92722.t1 MTR_1g108500 54.867 113 28 2 8 118 94 185 1.36e-29 113
MS.gene92722.t1 MTR_7g028448 39.412 170 91 3 5 174 8 165 1.07e-28 106
MS.gene92722.t1 MTR_4g036915 39.412 170 91 3 5 174 8 165 1.07e-28 106
MS.gene92722.t1 MTR_4g127140 36.571 175 91 4 5 166 8 175 2.69e-26 100
MS.gene92722.t1 MTR_3g067875 80.357 56 11 0 18 73 1 56 1.51e-25 95.5
MS.gene92722.t1 MTR_1g063160 44.643 112 57 3 9 118 2 110 2.63e-23 93.2
MS.gene92722.t1 MTR_3g067915 47.872 94 49 0 33 126 3 96 4.47e-23 90.1
MS.gene92722.t1 MTR_4g131030 40.476 126 59 4 9 118 2 127 7.31e-23 92.8
MS.gene92722.t1 MTR_8g079502 56.522 69 30 0 9 77 2 70 5.63e-22 89.7
MS.gene92722.t1 MTR_1g054265 51.948 77 37 0 9 85 2 78 7.79e-22 89.0
MS.gene92722.t1 MTR_1g047550 56.522 69 30 0 9 77 2 70 8.18e-22 89.0
MS.gene92722.t1 MTR_4g094638 44.000 100 55 1 9 107 2 101 4.35e-21 87.0
MS.gene92722.t1 MTR_4g094632 41.584 101 57 1 9 109 2 100 6.95e-21 85.9
MS.gene92722.t1 MTR_3g067870 65.574 61 21 0 16 76 83 143 1.66e-20 85.1
MS.gene92722.t1 MTR_8g051580 55.072 69 31 0 9 77 2 70 2.50e-20 85.1
MS.gene92722.t1 MTR_8g046350 40.650 123 64 4 9 129 2 117 4.55e-20 84.0
MS.gene92722.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 1.05e-19 84.7
MS.gene92722.t1 MTR_4g093970 32.544 169 82 3 10 160 29 183 2.05e-19 84.0
MS.gene92722.t1 MTR_3g452380 38.760 129 76 3 3 129 11 138 8.32e-19 82.4
MS.gene92722.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 1.19e-18 81.6
MS.gene92722.t1 MTR_4g102530 52.239 67 32 0 10 76 3 69 1.31e-18 81.3
MS.gene92722.t1 MTR_3g102570 44.118 102 54 3 9 109 2 101 3.90e-18 82.0
MS.gene92722.t1 MTR_8g033270 46.835 79 40 1 9 85 2 80 3.95e-18 80.9
MS.gene92722.t1 MTR_1g053070 46.914 81 43 0 9 89 2 82 8.93e-18 79.7
MS.gene92722.t1 MTR_2g017865 36.134 119 74 2 9 126 17 134 9.05e-18 80.1
MS.gene92722.t1 MTR_8g022970 33.537 164 84 4 8 159 17 167 9.67e-18 78.6
MS.gene92722.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 9.98e-18 78.6
MS.gene92722.t1 MTR_5g032150 33.333 156 73 7 9 157 2 133 1.51e-17 79.0
MS.gene92722.t1 MTR_5g032520 40.187 107 52 4 9 108 2 103 2.00e-17 78.6
MS.gene92722.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 2.80e-17 78.2
MS.gene92722.t1 MTR_0003s0590 50.000 68 34 0 9 76 2 69 2.92e-17 78.6
MS.gene92722.t1 MTR_8g033220 49.275 69 35 0 10 78 3 71 3.14e-17 78.2
MS.gene92722.t1 MTR_4g109830 47.887 71 34 2 7 76 2 70 3.59e-17 77.8
MS.gene92722.t1 MTR_7g075870 49.254 67 34 0 10 76 3 69 3.83e-17 77.4
MS.gene92722.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 3.98e-17 78.6
MS.gene92722.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 4.14e-17 78.2
MS.gene92722.t1 MTR_6g464720 47.826 69 35 1 9 76 2 70 1.18e-16 77.0
MS.gene92722.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 1.20e-16 76.3
MS.gene92722.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 1.21e-16 76.6
MS.gene92722.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 2.07e-16 71.6
MS.gene92722.t1 MTR_6g015975 47.826 69 35 1 9 76 2 70 2.37e-16 75.9
MS.gene92722.t1 MTR_7g016600 49.296 71 33 2 7 76 2 70 2.66e-16 75.9
MS.gene92722.t1 MTR_7g075870 48.529 68 34 1 10 76 3 70 7.23e-16 73.9
MS.gene92722.t1 MTR_1g029670 48.485 66 33 1 9 74 2 66 1.83e-15 72.4
MS.gene92722.t1 MTR_5g046870 46.377 69 36 1 9 76 2 70 1.84e-15 70.5
MS.gene92722.t1 MTR_8g066260 44.928 69 37 1 9 76 2 70 1.94e-15 73.6
MS.gene92722.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 2.22e-15 72.0
MS.gene92722.t1 MTR_5g046790 50.877 57 28 0 9 65 2 58 2.63e-15 72.4
MS.gene92722.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 6.87e-15 72.0
MS.gene92722.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 8.42e-15 71.6
MS.gene92722.t1 MTR_7g016630 42.029 69 39 1 9 76 2 70 8.61e-15 72.0
MS.gene92722.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 1.15e-14 71.2
MS.gene92722.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 1.16e-14 71.2
MS.gene92722.t1 MTR_4g084740 47.222 72 37 1 9 79 2 73 1.17e-14 72.4
MS.gene92722.t1 MTR_8g097090 53.571 56 26 0 9 64 2 57 1.31e-14 71.2
MS.gene92722.t1 MTR_3g113030 45.714 70 36 1 9 76 2 71 1.98e-14 70.5
MS.gene92722.t1 MTR_1g041615 37.383 107 58 2 20 125 17 115 2.04e-14 68.2
MS.gene92722.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 2.11e-14 66.2
MS.gene92722.t1 MTR_7g075850 54.386 57 26 0 9 65 2 58 3.05e-14 70.1
MS.gene92722.t1 MTR_1g038300 45.714 70 36 1 9 76 2 71 3.74e-14 69.7
MS.gene92722.t1 MTR_4g036050 30.667 150 87 6 9 157 2 135 3.02e-13 66.2
MS.gene92722.t1 MTR_4g036050 30.667 150 87 6 9 157 2 135 3.89e-13 66.2
MS.gene92722.t1 MTR_4g036050 30.667 150 87 6 9 157 2 135 4.43e-13 65.9
MS.gene92722.t1 MTR_4g036050 30.667 150 87 6 9 157 2 135 4.80e-13 66.2
MS.gene92722.t1 MTR_4g093030 29.299 157 76 4 9 135 2 153 1.37e-12 63.9
MS.gene92722.t1 MTR_4g108720 31.008 129 84 4 9 134 2 128 1.73e-12 66.2
MS.gene92722.t1 MTR_3g109930 29.878 164 99 3 27 183 20 174 4.22e-12 63.2
MS.gene92722.t1 MTR_4g051538 30.435 161 95 4 5 163 5 150 1.42e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92722.t1 AT5G60440 54.396 182 76 4 5 179 3 184 5.60e-56 181
MS.gene92722.t1 AT1G01530 43.333 180 96 3 4 179 2 179 4.54e-40 138
MS.gene92722.t1 AT2G24840 47.826 161 73 4 9 163 63 218 6.73e-40 138
MS.gene92722.t1 AT4G36590 45.614 171 83 4 5 167 3 171 2.68e-38 134
MS.gene92722.t1 AT1G65360 41.989 181 96 4 5 179 3 180 6.17e-37 129
MS.gene92722.t1 AT2G34440 36.000 150 94 2 9 158 2 149 2.17e-26 100
MS.gene92722.t1 AT3G66656 38.760 129 75 1 9 133 2 130 2.57e-23 93.2
MS.gene92722.t1 AT1G72350 36.774 155 65 4 9 163 43 164 3.12e-23 94.0
MS.gene92722.t1 AT3G04100 32.911 158 90 4 2 149 7 158 3.88e-23 93.2
MS.gene92722.t1 AT4G09960 39.231 130 69 5 9 131 2 128 1.53e-20 86.7
MS.gene92722.t1 AT4G09960 38.235 136 74 5 9 137 2 134 2.21e-20 86.7
MS.gene92722.t1 AT4G09960 38.235 136 74 5 9 137 3 135 2.55e-20 86.3
MS.gene92722.t1 AT4G09960 38.235 136 74 5 9 137 12 144 2.92e-20 86.7
MS.gene92722.t1 AT4G09960 38.235 136 74 5 9 137 28 160 3.51e-20 86.7
MS.gene92722.t1 AT2G45660 51.471 68 33 0 10 77 3 70 8.28e-20 83.2
MS.gene92722.t1 AT4G09960 39.669 121 67 4 9 126 97 214 9.22e-20 86.7
MS.gene92722.t1 AT2G45660 51.471 68 33 0 10 77 3 70 3.96e-19 82.8
MS.gene92722.t1 AT2G45650 51.471 68 33 0 9 76 2 69 6.46e-19 83.2
MS.gene92722.t1 AT1G28460 30.994 171 109 5 5 169 4 171 7.35e-19 81.3
MS.gene92722.t1 AT4G24540 50.000 68 34 0 9 76 2 69 1.14e-18 81.6
MS.gene92722.t1 AT2G22540 50.000 68 34 0 9 76 2 69 2.88e-18 81.3
MS.gene92722.t1 AT2G22540 50.000 68 34 0 9 76 2 69 2.88e-18 81.3
MS.gene92722.t1 AT3G57230 45.588 68 37 0 9 76 2 69 2.94e-18 79.0
MS.gene92722.t1 AT4G18960 40.385 104 50 2 5 108 16 107 3.60e-18 81.3
MS.gene92722.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.66e-18 79.3
MS.gene92722.t1 AT2G42830 49.333 75 36 1 2 76 12 84 4.88e-18 80.5
MS.gene92722.t1 AT5G10140 52.174 69 32 1 9 76 2 70 5.12e-18 79.0
MS.gene92722.t1 AT2G42830 49.333 75 36 1 2 76 12 84 5.42e-18 80.5
MS.gene92722.t1 AT5G51870 53.731 67 31 0 10 76 3 69 6.01e-18 79.7
MS.gene92722.t1 AT4G22950 50.746 67 33 0 10 76 3 69 6.91e-18 78.6
MS.gene92722.t1 AT4G37940 47.059 68 36 0 9 76 2 69 7.26e-18 79.7
MS.gene92722.t1 AT3G58780 37.405 131 68 4 2 126 12 134 7.59e-18 80.1
MS.gene92722.t1 AT5G51870 51.389 72 35 0 5 76 21 92 7.80e-18 79.0
MS.gene92722.t1 AT5G51870 53.731 67 31 0 10 76 3 69 8.00e-18 79.3
MS.gene92722.t1 AT5G10140 52.174 69 32 1 9 76 2 70 8.58e-18 78.6
MS.gene92722.t1 AT3G58780 37.405 131 68 4 2 126 18 140 8.67e-18 80.1
MS.gene92722.t1 AT4G37940 47.059 68 36 0 9 76 2 69 8.90e-18 78.2
MS.gene92722.t1 AT5G51870 53.731 67 31 0 10 76 13 79 9.07e-18 79.7
MS.gene92722.t1 AT4G37940 47.059 68 36 0 9 76 2 69 9.16e-18 79.3
MS.gene92722.t1 AT5G10140 52.174 69 32 1 9 76 2 70 9.52e-18 78.6
MS.gene92722.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.02e-17 78.6
MS.gene92722.t1 AT3G58780 37.405 131 68 4 2 126 12 134 1.32e-17 80.1
MS.gene92722.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.40e-17 79.7
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.44e-17 77.4
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.44e-17 77.4
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.44e-17 77.4
MS.gene92722.t1 AT5G13790 51.471 68 33 0 9 76 2 69 1.45e-17 79.7
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.57e-17 75.9
MS.gene92722.t1 AT3G57230 45.588 68 37 0 9 76 2 69 2.16e-17 78.6
MS.gene92722.t1 AT3G57230 45.588 68 37 0 9 76 2 69 2.16e-17 78.6
MS.gene92722.t1 AT4G22950 50.746 67 33 0 10 76 3 69 2.66e-17 78.2
MS.gene92722.t1 AT4G22950 50.746 67 33 0 10 76 3 69 2.66e-17 78.2
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.85e-17 76.3
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.85e-17 76.3
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.85e-17 76.3
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.85e-17 76.3
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.85e-17 76.3
MS.gene92722.t1 AT3G57390 48.529 68 35 0 9 76 2 69 3.68e-17 77.8
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.43e-17 77.0
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.43e-17 77.0
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.56e-17 77.4
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.56e-17 77.4
MS.gene92722.t1 AT5G62165 49.254 67 34 0 10 76 3 69 4.56e-17 77.4
MS.gene92722.t1 AT1G29962 26.901 171 119 2 5 169 4 174 7.33e-17 76.3
MS.gene92722.t1 AT5G51860 50.746 67 33 0 10 76 3 69 7.90e-17 76.6
MS.gene92722.t1 AT3G57390 48.529 68 35 0 9 76 2 69 8.18e-17 77.4
MS.gene92722.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.16e-16 76.3
MS.gene92722.t1 AT2G22540 57.143 56 24 0 9 64 2 57 2.21e-16 75.9
MS.gene92722.t1 AT3G30260 44.928 69 37 1 9 76 2 70 2.70e-16 75.9
MS.gene92722.t1 AT2G14210 44.928 69 37 1 9 76 2 70 3.24e-16 75.5
MS.gene92722.t1 AT3G61120 47.059 68 36 0 9 76 2 69 3.59e-16 75.5
MS.gene92722.t1 AT5G65050 47.826 69 35 1 9 76 2 70 3.92e-16 73.9
MS.gene92722.t1 AT2G14210 44.928 69 37 1 9 76 2 70 4.20e-16 75.1
MS.gene92722.t1 AT1G26310 47.887 71 34 2 7 76 2 70 5.13e-16 75.1
MS.gene92722.t1 AT3G58780 37.302 126 68 4 2 126 12 127 5.25e-16 75.1
MS.gene92722.t1 AT5G15800 47.826 69 35 1 9 76 2 70 6.44e-16 75.1
MS.gene92722.t1 AT4G11880 57.143 56 24 0 10 65 3 58 7.99e-16 73.2
MS.gene92722.t1 AT4G11880 57.143 56 24 0 10 65 3 58 7.99e-16 73.2
MS.gene92722.t1 AT5G65060 47.826 69 35 1 9 76 2 70 8.48e-16 73.6
MS.gene92722.t1 AT1G69120 47.887 71 34 2 7 76 2 70 8.68e-16 74.3
MS.gene92722.t1 AT5G60910 46.377 69 36 1 9 76 2 70 9.49e-16 74.3
MS.gene92722.t1 AT3G58780 53.846 65 28 1 2 66 12 74 1.00e-15 74.7
MS.gene92722.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.05e-15 73.2
MS.gene92722.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.08e-15 73.2
MS.gene92722.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.08e-15 74.3
MS.gene92722.t1 AT5G20240 46.575 73 37 1 9 79 2 74 1.17e-15 73.6
MS.gene92722.t1 AT5G20240 46.575 73 37 1 9 79 2 74 1.20e-15 72.0
MS.gene92722.t1 AT5G65060 47.826 69 35 1 9 76 2 70 1.24e-15 72.8
MS.gene92722.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.27e-15 72.8
MS.gene92722.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.31e-15 73.9
MS.gene92722.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.31e-15 73.9
MS.gene92722.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.31e-15 73.9
MS.gene92722.t1 AT1G77950 47.222 72 37 1 9 79 2 73 1.31e-15 73.9
MS.gene92722.t1 AT4G11880 57.143 56 24 0 10 65 3 58 1.41e-15 73.6
MS.gene92722.t1 AT4G11880 57.143 56 24 0 10 65 3 58 1.41e-15 73.6
MS.gene92722.t1 AT5G65060 47.826 69 35 1 9 76 2 70 1.45e-15 72.8
MS.gene92722.t1 AT1G77980 50.000 72 35 1 9 79 2 73 1.57e-15 74.7
MS.gene92722.t1 AT2G03710 48.571 70 34 2 9 76 2 71 2.17e-15 72.4
MS.gene92722.t1 AT1G69120 46.377 69 36 1 9 76 2 70 2.22e-15 73.6
MS.gene92722.t1 AT1G22130 38.710 93 56 1 9 100 2 94 2.31e-15 74.3
MS.gene92722.t1 AT3G54340 45.205 73 38 1 9 79 2 74 2.44e-15 73.2
MS.gene92722.t1 AT3G02310 46.377 69 36 1 9 76 2 70 3.19e-15 72.0
MS.gene92722.t1 AT5G23260 49.333 75 36 1 5 77 14 88 5.33e-15 72.8
MS.gene92722.t1 AT5G23260 49.333 75 36 1 5 77 14 88 6.02e-15 72.4
MS.gene92722.t1 AT1G24260 53.571 56 26 0 9 64 2 57 7.67e-15 71.6
MS.gene92722.t1 AT1G24260 53.571 56 26 0 9 64 2 57 8.21e-15 72.0
MS.gene92722.t1 AT1G24260 53.571 56 26 0 9 64 2 57 8.36e-15 72.0
MS.gene92722.t1 AT5G23260 50.704 71 33 1 9 77 2 72 9.67e-15 71.6
MS.gene92722.t1 AT5G23260 50.704 71 33 1 9 77 2 72 1.13e-14 71.2
MS.gene92722.t1 AT2G03710 48.571 70 34 2 9 76 2 71 1.23e-14 71.6
MS.gene92722.t1 AT2G03710 48.571 70 34 2 9 76 2 71 1.30e-14 71.2
MS.gene92722.t1 AT5G65070 40.580 69 40 1 9 76 2 70 1.41e-14 68.9
MS.gene92722.t1 AT3G02310 53.571 56 26 0 9 64 2 57 1.60e-14 71.2
MS.gene92722.t1 AT2G22630 42.647 68 39 0 9 76 2 69 1.78e-14 70.5
MS.gene92722.t1 AT2G22630 42.647 68 39 0 9 76 2 69 1.78e-14 70.5
MS.gene92722.t1 AT1G71692 45.714 70 37 1 9 77 2 71 2.55e-14 69.7
MS.gene92722.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.58e-14 69.7
MS.gene92722.t1 AT5G65070 40.580 69 40 1 9 76 2 70 6.45e-14 68.9
MS.gene92722.t1 AT1G17310 50.633 79 37 1 8 86 47 123 6.97e-14 68.9
MS.gene92722.t1 AT5G65070 40.580 69 40 1 9 76 2 70 8.82e-14 68.2
MS.gene92722.t1 AT1G17310 50.633 79 37 1 8 86 58 134 9.52e-14 68.6
MS.gene92722.t1 AT1G28450 28.834 163 107 5 5 161 4 163 1.01e-13 67.8
MS.gene92722.t1 AT5G65070 47.368 57 30 0 9 65 2 58 1.29e-13 68.2
MS.gene92722.t1 AT1G47760 40.299 67 40 0 9 75 2 68 2.43e-13 66.6
MS.gene92722.t1 AT1G18750 41.333 75 42 1 9 81 2 76 3.48e-13 68.6
MS.gene92722.t1 AT1G18750 41.333 75 42 1 9 81 2 76 3.96e-13 68.6
MS.gene92722.t1 AT1G18750 41.333 75 42 1 9 81 2 76 4.07e-13 68.2
MS.gene92722.t1 AT5G65080 40.580 69 40 1 9 76 9 77 1.13e-12 65.1
MS.gene92722.t1 AT5G65080 48.148 54 28 0 9 62 9 62 2.08e-12 64.3
MS.gene92722.t1 AT4G37435 48.214 56 29 0 9 64 2 57 4.32e-12 63.2
MS.gene92722.t1 AT1G77080 49.275 69 34 1 9 76 2 70 1.50e-11 61.6
MS.gene92722.t1 AT1G77080 49.275 69 34 1 9 76 2 70 1.92e-11 61.2
MS.gene92722.t1 AT2G26320 37.662 77 46 1 5 79 14 90 2.17e-11 59.3
MS.gene92722.t1 AT5G49420 36.170 94 53 2 5 91 3 96 2.29e-11 62.8
MS.gene92722.t1 AT1G69540 41.892 74 42 1 9 81 2 75 3.40e-11 62.4
MS.gene92722.t1 AT1G77080 49.275 69 34 1 9 76 2 70 3.64e-11 60.8
MS.gene92722.t1 AT1G69540 40.789 76 44 1 9 83 2 77 4.53e-11 62.0

Find 45 sgRNAs with CRISPR-Local

Find 56 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTCAGATTGTTGAGTATT+TGG 0.166839 3.1:+22792938 None:intergenic
TGGTGGGCTTGTCCGGTTAA+TGG 0.250384 3.1:-22793100 MS.gene92722:CDS
TTGCAGCCTCATTTGCTTGA+TGG 0.267791 3.1:-22792878 MS.gene92722:CDS
TCAACTTGAATTATTCAAAA+AGG 0.268977 3.1:-22793065 MS.gene92722:CDS
TCCGGTTAATGGAATGAATA+AGG 0.314669 3.1:-22793089 MS.gene92722:CDS
TCACCATGGCTTCAATAATA+TGG 0.324358 3.1:-22792843 MS.gene92722:intron
GAATATATTGCCAGAGACTA+TGG 0.341664 3.1:-22792800 MS.gene92722:CDS
GCTTTGAGAAAGTCACTTGC+AGG 0.373101 3.1:+22793434 None:intergenic
CTCATCGCCAATCTTCTTCT+CGG 0.375394 3.1:+22793159 None:intergenic
TCCTTATTCATTCCATTAAC+CGG 0.377037 3.1:+22793088 None:intergenic
CCTCCGTTTCCTTGAGCAAA+TGG 0.380041 3.1:+22793131 None:intergenic
GTCTATGACCGTATGAAGAT+TGG 0.395944 3.1:+22793303 None:intergenic
GACTCAAATCAACAACATAA+TGG 0.407196 3.1:-22793185 MS.gene92722:CDS
CTTATTTATTCCATAGTCTC+TGG 0.411128 3.1:+22792790 None:intergenic
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 3.1:-22793385 MS.gene92722:CDS
GCCTTTCTTTCCACTCGACA+TGG 0.467815 3.1:+22793504 None:intergenic
TCTATGACCGTATGAAGATT+GGG 0.472924 3.1:+22793304 None:intergenic
GTTGAGTATTTGGCTGATGA+TGG 0.473248 3.1:+22792948 None:intergenic
ATGGATGCCGAGAAGAAGAT+TGG 0.480508 3.1:-22793166 MS.gene92722:CDS
TGAGGCTGCAATTGCAACAT+AGG 0.486801 3.1:+22792890 None:intergenic
GAACCATTTGCTCAAGGAAA+CGG 0.490715 3.1:-22793134 MS.gene92722:CDS
AGCAGCATCTGCACCACAAA+GGG 0.492573 3.1:+22793372 None:intergenic
ACACCATATTATTGAAGCCA+TGG 0.549763 3.1:+22792840 None:intergenic
ATTGATCCATCAAGCAAATG+AGG 0.560013 3.1:+22792872 None:intergenic
TGGTCACCCCAATCTTCATA+CGG 0.566894 3.1:-22793311 MS.gene92722:CDS
GCCATGTCGAGTGGAAAGAA+AGG 0.571063 3.1:-22793505 MS.gene92722:CDS
CTCGTTGTATTCTCACCTAG+TGG 0.580084 3.1:-22793349 MS.gene92722:CDS
TCGAGTGGAAAGAAAGGCCG+AGG 0.584906 3.1:-22793499 MS.gene92722:CDS
CGGCACCATGCAACTCATTG+AGG 0.589770 3.1:-22793248 MS.gene92722:CDS
ATGAAGATTGGGGTGACCAA+AGG 0.594093 3.1:+22793315 None:intergenic
AGCATTGAGTTCACGAACGT+TGG 0.603238 3.1:+22793213 None:intergenic
TGTATTCTCACCTAGTGGAA+AGG 0.611194 3.1:-22793344 MS.gene92722:CDS
GTGGTACAAGAGAAAGATAG+TGG 0.616578 3.1:+22793281 None:intergenic
TGAGCTGAACCATTTGCTCA+AGG 0.619764 3.1:-22793140 MS.gene92722:CDS
AAGGAAAATACCTTTCCACT+AGG 0.624124 3.1:+22793334 None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG 0.625617 3.1:-22793424 MS.gene92722:CDS
GAGCAGCATCTGCACCACAA+AGG 0.629318 3.1:+22793371 None:intergenic
GTTCACGAACGTTGGCATTG+CGG 0.638735 3.1:+22793221 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 3.1:+22792845 None:intergenic
GTGAGCCTCAATGAGTTGCA+TGG 0.660003 3.1:+22793243 None:intergenic
CCATTTGCTCAAGGAAACGG+AGG 0.672367 3.1:-22793131 MS.gene92722:CDS
TGTGTGTCAGCCATGTCGAG+TGG 0.672629 3.1:-22793514 None:intergenic
CTATGACCGTATGAAGATTG+GGG 0.706113 3.1:+22793305 None:intergenic
CTTGTACCACCACAAAACAA+CGG 0.721002 3.1:-22793268 MS.gene92722:CDS
GGATCAATGATGCCTCACCA+TGG 0.734402 3.1:-22792857 MS.gene92722:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTTGAATTATTCAAAA+AGG - chr3.1:22793232-22793251 MS.gene92722:CDS 20.0%
! ATTTCAGATTGTTGAGTATT+TGG + chr3.1:22793362-22793381 None:intergenic 25.0%
! TGAATTATTCAAAAAGGCTT+TGG - chr3.1:22793238-22793257 MS.gene92722:CDS 25.0%
!!! GGATTTTGAAAAAAATGTGA+TGG + chr3.1:22793389-22793408 None:intergenic 25.0%
GACTCAAATCAACAACATAA+TGG - chr3.1:22793112-22793131 MS.gene92722:CDS 30.0%
TCCTTATTCATTCCATTAAC+CGG + chr3.1:22793212-22793231 None:intergenic 30.0%
! ATTATTCAAAAAGGCTTTGG+AGG - chr3.1:22793241-22793260 MS.gene92722:CDS 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG + chr3.1:22792827-22792846 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG + chr3.1:22792966-22792985 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG + chr3.1:22793460-22793479 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG + chr3.1:22793455-22793474 None:intergenic 35.0%
ATTGATCCATCAAGCAAATG+AGG + chr3.1:22793428-22793447 None:intergenic 35.0%
GAATATATTGCCAGAGACTA+TGG - chr3.1:22793497-22793516 MS.gene92722:CDS 35.0%
TCACCATGGCTTCAATAATA+TGG - chr3.1:22793454-22793473 MS.gene92722:CDS 35.0%
TCCGGTTAATGGAATGAATA+AGG - chr3.1:22793208-22793227 MS.gene92722:CDS 35.0%
TCTATGACCGTATGAAGATT+GGG + chr3.1:22792996-22793015 None:intergenic 35.0%
TTGCCAACAAAAAATGGAAG+AGG + chr3.1:22793305-22793324 None:intergenic 35.0%
!! GAAGCATTGCCAACAAAAAA+TGG + chr3.1:22793311-22793330 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG - chr3.1:22792966-22792985 MS.gene92722:CDS 35.0%
CTATGACCGTATGAAGATTG+GGG + chr3.1:22792995-22793014 None:intergenic 40.0%
CTTGTACCACCACAAAACAA+CGG - chr3.1:22793029-22793048 MS.gene92722:CDS 40.0%
GAACCATTTGCTCAAGGAAA+CGG - chr3.1:22793163-22793182 MS.gene92722:CDS 40.0%
GTCTATGACCGTATGAAGAT+TGG + chr3.1:22792997-22793016 None:intergenic 40.0%
GTGGTACAAGAGAAAGATAG+TGG + chr3.1:22793019-22793038 None:intergenic 40.0%
GTTGAGTATTTGGCTGATGA+TGG + chr3.1:22793352-22793371 None:intergenic 40.0%
TGTATTCTCACCTAGTGGAA+AGG - chr3.1:22792953-22792972 MS.gene92722:CDS 40.0%
! AGGAAACGGAGGCTAATTTT+TGG - chr3.1:22793177-22793196 MS.gene92722:CDS 40.0%
!! AAACGGAGGCTAATTTTTGG+TGG - chr3.1:22793180-22793199 MS.gene92722:CDS 40.0%
!!! AACGGAGGCTAATTTTTGGT+GGG - chr3.1:22793181-22793200 MS.gene92722:CDS 40.0%
!!! CGACCTCTTCCATTTTTTGT+TGG - chr3.1:22793299-22793318 MS.gene92722:CDS 40.0%
!!! TAATTTTTGGTGGGCTTGTC+CGG - chr3.1:22793190-22793209 MS.gene92722:CDS 40.0%
ATGAAGATTGGGGTGACCAA+AGG + chr3.1:22792985-22793004 None:intergenic 45.0%
ATGGATGCCGAGAAGAAGAT+TGG - chr3.1:22793131-22793150 MS.gene92722:CDS 45.0%
CTCATCGCCAATCTTCTTCT+CGG + chr3.1:22793141-22793160 None:intergenic 45.0%
CTCGTTGTATTCTCACCTAG+TGG - chr3.1:22792948-22792967 MS.gene92722:CDS 45.0%
TGAGCTGAACCATTTGCTCA+AGG - chr3.1:22793157-22793176 MS.gene92722:CDS 45.0%
TGAGGCTGCAATTGCAACAT+AGG + chr3.1:22793410-22793429 None:intergenic 45.0%
TGGTCACCCCAATCTTCATA+CGG - chr3.1:22792986-22793005 MS.gene92722:CDS 45.0%
TTGCAGCCTCATTTGCTTGA+TGG - chr3.1:22793419-22793438 MS.gene92722:CDS 45.0%
! AGCATTGAGTTCACGAACGT+TGG + chr3.1:22793087-22793106 None:intergenic 45.0%
!! ACTTTCTCAAAGCGTCGTAG+CGG - chr3.1:22792873-22792892 MS.gene92722:CDS 45.0%
!! GCTTTGAGAAAGTCACTTGC+AGG + chr3.1:22792866-22792885 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG + chr3.1:22792928-22792947 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG - chr3.1:22792912-22792931 MS.gene92722:CDS 50.0%
CCATTTGCTCAAGGAAACGG+AGG - chr3.1:22793166-22793185 MS.gene92722:CDS 50.0%
CCTCCGTTTCCTTGAGCAAA+TGG + chr3.1:22793169-22793188 None:intergenic 50.0%
GGATCAATGATGCCTCACCA+TGG - chr3.1:22793440-22793459 MS.gene92722:CDS 50.0%
GTGAGCCTCAATGAGTTGCA+TGG + chr3.1:22793057-22793076 None:intergenic 50.0%
GTTCACGAACGTTGGCATTG+CGG + chr3.1:22793079-22793098 None:intergenic 50.0%
! TCTCGATCTTTTGGCGACCT+CGG + chr3.1:22792818-22792837 None:intergenic 50.0%
!!! ATGGTGCCGTTGTTTTGTGG+TGG + chr3.1:22793038-22793057 None:intergenic 50.0%
!!! TGCATGGTGCCGTTGTTTTG+TGG + chr3.1:22793041-22793060 None:intergenic 50.0%
CGGCACCATGCAACTCATTG+AGG - chr3.1:22793049-22793068 MS.gene92722:CDS 55.0%
GAGCAGCATCTGCACCACAA+AGG + chr3.1:22792929-22792948 None:intergenic 55.0%
TCGAGTGGAAAGAAAGGCCG+AGG - chr3.1:22792798-22792817 MS.gene92722:CDS 55.0%
!! TGGTGGGCTTGTCCGGTTAA+TGG - chr3.1:22793197-22793216 MS.gene92722:CDS 55.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 22792795 22793524 22792795 ID=MS.gene92722
chr3.1 mRNA 22792795 22793524 22792795 ID=MS.gene92722.t1;Parent=MS.gene92722
chr3.1 exon 22792844 22793524 22792844 ID=MS.gene92722.t1.exon1;Parent=MS.gene92722.t1
chr3.1 CDS 22792844 22793524 22792844 ID=cds.MS.gene92722.t1;Parent=MS.gene92722.t1
chr3.1 exon 22792795 22792821 22792795 ID=MS.gene92722.t1.exon2;Parent=MS.gene92722.t1
chr3.1 CDS 22792795 22792821 22792795 ID=cds.MS.gene92722.t1;Parent=MS.gene92722.t1
Gene Sequence

>MS.gene92722

ATGTCGAGTGGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTCATACGGTCATAGACCACTATCTTTCTCTTGTACCACCACAAAACAACGGCACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGATGACTCAAATCAACAACATAATGGATGCCGAGAAGAAGATTGGCGATGAGCTGAACCATTTGCTCAAGGAAACGGAGGCTAATTTTTGGTGGGCTTGTCCGGTTAATGGAATGAATAAGGATCAACTTGAATTATTCAAAAAGGCTTTGGAGGTGCTTAAGAAACTTCTAATTCAACATGCTACAACTCGACCTCTTCCATTTTTTGTTGGCAATGCTTCTTTCTCGAACATTTATCTCCATCATCAGCCAAATACTCAACAATCTGAAATGTTGCCATCACATTTTTTTCAAAATCCTATGTTGCAATTGCAGCCTCATTTGCTTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAATAATAATGTTCTGTAGAATATATTGCCAGAGACTATGGAATAA
Protein sequence

>MS.gene92722.t1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLHTVIDHYLSLVPPQNNGTMQLIEAHRNANVRELNAQMTQINNIMDAEKKIGDELNHLLKETEANFWWACPVNGMNKDQLELFKKALEVLKKLLIQHATTRPLPFFVGNASFSNIYLHHQPNTQQSEMLPSHFFQNPMLQLQPHLLDGSMMPHHGFNNMNILPETME