AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92952

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92952.t1 MTR_1g108510 90.351 228 22 0 1 228 1 228 4.79e-158 437
MS.gene92952.t1 MTR_3g030770 89.035 228 25 0 1 228 1 228 1.53e-155 430
MS.gene92952.t1 MTR_2g093190 86.842 228 30 0 1 228 1 228 8.81e-150 416
MS.gene92952.t1 MTR_1g108580 86.842 228 30 0 1 228 1 228 1.78e-149 415
MS.gene92952.t1 MTR_1g105920 75.113 221 45 2 1 213 1 219 1.91e-115 329
MS.gene92952.t1 MTR_1g105910 69.362 235 54 3 1 227 1 225 5.71e-112 320
MS.gene92952.t1 MTR_8g043650 70.996 231 57 2 1 223 1 229 1.39e-111 320
MS.gene92952.t1 MTR_2g030740 71.493 221 53 2 1 213 1 219 1.88e-110 317
MS.gene92952.t1 MTR_3g052920 71.041 221 54 2 1 213 1 219 8.74e-110 315
MS.gene92952.t1 MTR_1g012570 70.136 221 56 2 1 213 1 219 1.51e-107 309
MS.gene92952.t1 MTR_0121s0080 66.383 235 61 3 1 227 1 225 9.75e-104 300
MS.gene92952.t1 MTR_1g077360 62.553 235 70 3 1 227 1 225 9.89e-100 290
MS.gene92952.t1 MTR_1g075600 63.404 235 68 3 1 227 1 225 6.35e-99 288
MS.gene92952.t1 MTR_5g045560 62.128 235 71 3 1 227 1 225 4.14e-95 278
MS.gene92952.t1 MTR_1g105905 64.679 218 59 3 18 227 1 208 5.71e-95 277
MS.gene92952.t1 MTR_5g053390 61.702 235 72 3 1 227 1 225 6.37e-94 275
MS.gene92952.t1 MTR_3g052870 66.968 221 44 5 1 213 1 200 4.06e-93 272
MS.gene92952.t1 MTR_2g085280 61.277 235 73 3 1 227 1 225 9.17e-93 272
MS.gene92952.t1 MTR_2g085250 62.115 227 76 2 1 219 1 225 1.47e-92 271
MS.gene92952.t1 MTR_5g055100 59.574 235 77 3 1 227 1 225 1.65e-90 266
MS.gene92952.t1 MTR_1g106070 71.978 182 43 1 1 174 1 182 1.20e-89 262
MS.gene92952.t1 MTR_7g062350 61.538 221 66 4 16 227 27 237 1.12e-83 249
MS.gene92952.t1 MTR_0121s0100 87.121 132 17 0 1 132 1 132 1.80e-79 234
MS.gene92952.t1 MTR_3g030780 69.697 132 40 0 1 132 1 132 1.31e-61 189
MS.gene92952.t1 MTR_3g080940 55.921 152 67 0 9 160 9 160 7.38e-59 185
MS.gene92952.t1 MTR_1g075570 58.989 178 51 2 18 187 1 164 1.04e-57 180
MS.gene92952.t1 MTR_3g067910 65.049 103 36 0 21 123 2 104 1.12e-41 137
MS.gene92952.t1 MTR_8g086290 41.818 165 86 2 5 166 8 165 1.45e-38 132
MS.gene92952.t1 MTR_2g105290 38.182 165 92 2 5 166 8 165 1.81e-34 121
MS.gene92952.t1 MTR_7g028448 41.176 170 88 2 5 174 8 165 6.16e-33 117
MS.gene92952.t1 MTR_4g036915 41.176 170 88 2 5 174 8 165 6.16e-33 117
MS.gene92952.t1 MTR_1g108500 60.825 97 17 1 22 118 110 185 1.85e-29 112
MS.gene92952.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 1.48e-26 97.8
MS.gene92952.t1 MTR_4g127140 36.571 175 91 4 5 166 8 175 1.65e-24 96.3
MS.gene92952.t1 MTR_3g067915 50.526 95 47 0 32 126 2 96 5.30e-24 92.0
MS.gene92952.t1 MTR_1g063160 46.667 105 54 2 9 111 2 106 1.91e-23 93.2
MS.gene92952.t1 MTR_4g131030 40.517 116 54 3 9 109 2 117 1.27e-21 89.4
MS.gene92952.t1 MTR_8g079502 55.072 69 31 0 9 77 2 70 1.52e-21 88.2
MS.gene92952.t1 MTR_1g047550 55.072 69 31 0 9 77 2 70 1.61e-21 88.2
MS.gene92952.t1 MTR_1g054265 52.055 73 35 0 9 81 2 74 4.51e-21 86.7
MS.gene92952.t1 MTR_8g046350 36.154 130 75 2 9 135 2 126 2.83e-20 84.3
MS.gene92952.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 2.96e-20 84.7
MS.gene92952.t1 MTR_3g067870 63.934 61 22 0 16 76 83 143 5.58e-20 83.6
MS.gene92952.t1 MTR_8g051580 53.623 69 32 0 9 77 2 70 6.75e-20 84.0
MS.gene92952.t1 MTR_4g094632 38.182 110 66 1 9 118 2 109 7.52e-20 83.2
MS.gene92952.t1 MTR_3g005530 51.429 70 32 1 7 76 2 69 5.87e-19 82.4
MS.gene92952.t1 MTR_5g066180 31.928 166 88 4 9 171 2 145 6.96e-19 82.4
MS.gene92952.t1 MTR_4g102530 52.308 65 31 0 12 76 5 69 3.18e-18 80.1
MS.gene92952.t1 MTR_3g452380 49.333 75 36 1 2 76 12 84 1.04e-17 79.3
MS.gene92952.t1 MTR_8g087860 37.903 124 73 3 4 126 15 135 1.10e-17 79.3
MS.gene92952.t1 MTR_8g033220 30.357 224 120 10 12 216 5 211 1.33e-17 79.0
MS.gene92952.t1 MTR_3g102570 43.137 102 55 3 9 109 2 101 1.36e-17 80.1
MS.gene92952.t1 MTR_4g093970 54.545 66 30 0 10 75 29 94 1.37e-17 79.0
MS.gene92952.t1 MTR_8g033220 30.357 224 120 10 12 216 5 211 1.51e-17 78.6
MS.gene92952.t1 MTR_2g017865 37.398 123 73 3 5 126 15 134 2.64e-17 78.6
MS.gene92952.t1 MTR_8g033270 50.000 70 33 1 7 76 2 69 2.72e-17 78.6
MS.gene92952.t1 MTR_0003s0590 42.857 84 46 1 7 90 2 83 3.45e-17 78.2
MS.gene92952.t1 MTR_1g101970 50.000 70 33 1 7 76 2 69 5.35e-17 76.3
MS.gene92952.t1 MTR_1g053070 50.000 70 33 1 7 76 2 69 7.55e-17 77.0
MS.gene92952.t1 MTR_4g109830 46.479 71 35 2 7 76 2 70 9.19e-17 76.6
MS.gene92952.t1 MTR_7g075870 49.231 65 33 0 12 76 5 69 1.43e-16 75.9
MS.gene92952.t1 MTR_2g009890 47.143 70 35 1 7 76 2 69 1.55e-16 76.6
MS.gene92952.t1 MTR_5g032150 45.588 68 37 0 9 76 2 69 2.35e-16 75.5
MS.gene92952.t1 MTR_5g032520 45.588 68 37 0 9 76 2 69 2.38e-16 75.5
MS.gene92952.t1 MTR_6g464720 47.887 71 34 2 7 76 2 70 2.75e-16 75.9
MS.gene92952.t1 MTR_5g031000 47.143 70 35 1 7 76 2 69 4.87e-16 74.7
MS.gene92952.t1 MTR_5g031000 47.143 70 35 1 7 76 2 69 5.06e-16 74.7
MS.gene92952.t1 MTR_8g022970 31.646 158 95 3 8 159 17 167 9.13e-16 73.2
MS.gene92952.t1 MTR_7g016600 47.887 71 34 2 7 76 2 70 1.28e-15 73.9
MS.gene92952.t1 MTR_6g015975 47.887 71 34 2 7 76 2 70 1.42e-15 73.6
MS.gene92952.t1 MTR_7g075870 48.485 66 33 1 12 76 5 70 2.51e-15 72.4
MS.gene92952.t1 MTR_8g066260 45.070 71 36 2 7 76 2 70 4.03e-15 72.4
MS.gene92952.t1 MTR_3g088615 47.222 72 34 2 7 76 2 71 4.21e-15 71.2
MS.gene92952.t1 MTR_5g046870 46.479 71 35 2 7 76 2 70 8.43e-15 68.6
MS.gene92952.t1 MTR_1g038300 47.222 72 34 2 7 76 2 71 8.94e-15 71.2
MS.gene92952.t1 MTR_5g046790 42.029 69 39 1 9 76 2 70 1.30e-14 70.5
MS.gene92952.t1 MTR_2g461710 53.448 58 25 1 7 64 2 57 1.39e-14 66.6
MS.gene92952.t1 MTR_1g029670 45.833 72 35 2 7 76 2 71 1.41e-14 69.7
MS.gene92952.t1 MTR_4g084740 46.250 80 41 2 9 87 2 80 1.49e-14 72.0
MS.gene92952.t1 MTR_7g016630 42.254 71 38 2 7 76 2 70 1.75e-14 70.9
MS.gene92952.t1 MTR_3g084980 35.455 110 65 3 7 112 2 109 1.09e-13 68.6
MS.gene92952.t1 MTR_8g097090 45.070 71 36 2 7 76 2 70 1.25e-13 68.2
MS.gene92952.t1 MTR_5g021270 48.611 72 33 2 7 76 2 71 1.29e-13 68.2
MS.gene92952.t1 MTR_5g021270 48.611 72 33 2 7 76 2 71 1.29e-13 68.2
MS.gene92952.t1 MTR_7g075850 45.833 72 35 2 7 76 2 71 1.31e-13 68.2
MS.gene92952.t1 MTR_4g109810 50.000 58 27 1 7 64 2 57 2.76e-13 67.4
MS.gene92952.t1 MTR_3g113030 46.667 60 32 0 12 71 5 64 4.09e-13 66.6
MS.gene92952.t1 MTR_3g109930 29.927 137 86 2 27 159 20 150 5.36e-13 65.5
MS.gene92952.t1 MTR_5g066960 45.763 59 30 1 7 65 2 58 8.04e-13 61.6
MS.gene92952.t1 MTR_3g437790 30.216 139 88 4 26 159 30 164 4.29e-12 63.2
MS.gene92952.t1 MTR_1g041615 37.143 105 57 2 20 123 17 113 4.69e-12 61.6
MS.gene92952.t1 MTR_4g108720 38.636 88 51 2 9 93 2 89 8.48e-12 63.9
MS.gene92952.t1 MTR_4g036050 27.473 182 109 5 12 186 5 170 1.64e-11 61.6
MS.gene92952.t1 MTR_4g036050 40.299 67 39 1 12 77 5 71 2.94e-11 60.8
MS.gene92952.t1 MTR_4g036050 40.299 67 39 1 12 77 5 71 2.99e-11 60.5
MS.gene92952.t1 MTR_4g036050 40.299 67 39 1 12 77 5 71 3.60e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92952.t1 AT5G60440 55.738 183 74 4 5 180 3 185 1.02e-59 190
MS.gene92952.t1 AT2G24840 47.904 167 74 3 9 168 63 223 8.04e-44 148
MS.gene92952.t1 AT1G01530 43.407 182 97 3 4 181 2 181 4.49e-41 140
MS.gene92952.t1 AT4G36590 42.941 170 89 3 5 167 3 171 5.79e-37 130
MS.gene92952.t1 AT1G65360 39.894 188 90 5 5 179 3 180 1.15e-36 129
MS.gene92952.t1 AT2G34440 37.838 148 90 2 9 156 2 147 2.92e-27 102
MS.gene92952.t1 AT3G04100 31.383 188 121 4 2 183 7 192 1.74e-23 94.0
MS.gene92952.t1 AT3G66656 40.336 119 67 1 9 123 2 120 1.97e-23 93.2
MS.gene92952.t1 AT4G09960 39.837 123 66 4 7 126 2 119 6.02e-20 85.1
MS.gene92952.t1 AT4G09960 39.837 123 66 4 7 126 2 119 6.73e-20 85.1
MS.gene92952.t1 AT4G09960 39.837 123 66 4 7 126 3 120 6.86e-20 85.1
MS.gene92952.t1 AT4G09960 39.837 123 66 4 7 126 12 129 9.14e-20 85.1
MS.gene92952.t1 AT4G09960 39.837 123 66 4 7 126 28 145 9.76e-20 85.1
MS.gene92952.t1 AT1G72350 32.370 173 77 5 9 174 43 182 1.34e-19 84.3
MS.gene92952.t1 AT2G45660 41.176 102 51 2 12 104 5 106 1.89e-19 82.0
MS.gene92952.t1 AT4G09960 39.837 123 66 4 7 126 97 214 2.08e-19 85.5
MS.gene92952.t1 AT1G28460 29.762 168 115 1 5 169 4 171 1.06e-18 80.9
MS.gene92952.t1 AT2G45660 41.176 102 51 2 12 104 5 106 1.16e-18 81.6
MS.gene92952.t1 AT4G24540 33.108 148 82 3 9 156 2 132 1.19e-18 81.6
MS.gene92952.t1 AT2G45650 51.429 70 32 1 7 76 2 69 1.71e-18 81.6
MS.gene92952.t1 AT5G51870 53.846 65 30 0 12 76 5 69 6.77e-18 78.6
MS.gene92952.t1 AT5G13790 43.000 100 46 2 7 106 2 90 7.39e-18 80.5
MS.gene92952.t1 AT2G42830 49.333 75 36 1 2 76 12 84 8.59e-18 79.7
MS.gene92952.t1 AT5G51870 53.846 65 30 0 12 76 5 69 8.60e-18 79.0
MS.gene92952.t1 AT3G58780 38.168 131 67 4 2 126 12 134 8.78e-18 79.7
MS.gene92952.t1 AT2G42830 49.333 75 36 1 2 76 12 84 8.96e-18 79.7
MS.gene92952.t1 AT3G58780 38.168 131 67 4 2 126 18 140 1.07e-17 79.7
MS.gene92952.t1 AT5G51870 53.846 65 30 0 12 76 5 69 1.28e-17 79.0
MS.gene92952.t1 AT3G58780 38.168 131 67 4 2 126 12 134 1.29e-17 79.7
MS.gene92952.t1 AT3G57230 35.385 130 69 4 7 130 2 122 1.33e-17 77.0
MS.gene92952.t1 AT4G18960 44.444 90 47 2 5 93 16 103 1.39e-17 79.3
MS.gene92952.t1 AT5G51870 51.351 74 34 1 3 76 8 79 1.48e-17 79.0
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 1.57e-17 75.5
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 1.76e-17 77.0
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 1.76e-17 77.0
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 1.76e-17 77.0
MS.gene92952.t1 AT5G51870 53.846 65 30 0 12 76 28 92 1.88e-17 77.8
MS.gene92952.t1 AT2G22540 30.769 169 90 4 9 172 2 148 2.11e-17 78.6
MS.gene92952.t1 AT2G22540 30.769 169 90 4 9 172 2 148 2.11e-17 78.6
MS.gene92952.t1 AT4G22950 47.887 71 37 0 12 82 5 75 2.15e-17 77.0
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 2.83e-17 76.3
MS.gene92952.t1 AT4G37940 47.143 70 35 1 7 76 2 69 3.55e-17 77.8
MS.gene92952.t1 AT4G37940 47.143 70 35 1 7 76 2 69 4.51e-17 77.0
MS.gene92952.t1 AT1G29962 30.508 177 105 5 5 169 4 174 5.39e-17 76.3
MS.gene92952.t1 AT3G57230 35.385 130 69 4 7 130 2 122 5.92e-17 77.4
MS.gene92952.t1 AT3G57230 35.385 130 69 4 7 130 2 122 5.92e-17 77.4
MS.gene92952.t1 AT5G13790 51.429 70 32 1 7 76 2 69 6.47e-17 77.8
MS.gene92952.t1 AT5G10140 50.725 69 33 1 9 76 2 70 6.88e-17 75.5
MS.gene92952.t1 AT4G37940 47.143 70 35 1 7 76 2 69 6.99e-17 75.9
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.11e-17 76.3
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.11e-17 76.3
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.11e-17 76.3
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.51e-17 76.3
MS.gene92952.t1 AT5G62165 43.421 76 43 0 12 87 5 80 8.51e-17 76.3
MS.gene92952.t1 AT3G57390 48.571 70 34 1 7 76 2 69 9.24e-17 76.6
MS.gene92952.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.06e-16 75.5
MS.gene92952.t1 AT4G22950 50.769 65 32 0 12 76 5 69 1.13e-16 76.3
MS.gene92952.t1 AT4G22950 50.769 65 32 0 12 76 5 69 1.13e-16 76.3
MS.gene92952.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.29e-16 75.1
MS.gene92952.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.52e-16 75.5
MS.gene92952.t1 AT1G22130 35.593 118 74 2 9 125 2 118 2.07e-16 77.0
MS.gene92952.t1 AT3G57390 48.571 70 34 1 7 76 2 69 2.11e-16 76.3
MS.gene92952.t1 AT1G69120 40.816 98 47 4 7 95 2 97 2.93e-16 75.5
MS.gene92952.t1 AT5G51860 50.769 65 32 0 12 76 5 69 4.85e-16 74.3
MS.gene92952.t1 AT3G61120 48.571 70 34 1 7 76 2 69 5.17e-16 74.7
MS.gene92952.t1 AT1G26310 41.758 91 43 3 7 89 2 90 6.81e-16 74.7
MS.gene92952.t1 AT5G51860 50.769 65 32 0 12 76 5 69 7.14e-16 73.9
MS.gene92952.t1 AT1G77950 46.250 80 41 2 9 87 2 80 9.60e-16 74.3
MS.gene92952.t1 AT1G77950 46.250 80 41 2 9 87 2 80 9.60e-16 74.3
MS.gene92952.t1 AT1G77950 46.250 80 41 2 9 87 2 80 9.60e-16 74.3
MS.gene92952.t1 AT1G77950 46.250 80 41 2 9 87 2 80 9.60e-16 74.3
MS.gene92952.t1 AT1G69120 40.816 98 47 4 7 95 2 97 1.02e-15 74.3
MS.gene92952.t1 AT3G30260 45.070 71 36 2 7 76 2 70 1.09e-15 73.9
MS.gene92952.t1 AT2G14210 45.070 71 36 2 7 76 2 70 1.64e-15 73.2
MS.gene92952.t1 AT2G14210 45.070 71 36 2 7 76 2 70 2.16e-15 73.2
MS.gene92952.t1 AT4G11880 48.485 66 33 1 12 76 5 70 2.26e-15 72.0
MS.gene92952.t1 AT4G11880 48.485 66 33 1 12 76 5 70 2.26e-15 72.0
MS.gene92952.t1 AT5G60910 46.479 71 35 2 7 76 2 70 2.30e-15 73.2
MS.gene92952.t1 AT1G77980 42.045 88 50 1 9 95 2 89 3.33e-15 73.9
MS.gene92952.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.91e-15 71.2
MS.gene92952.t1 AT3G58780 52.308 65 29 1 2 66 12 74 4.11e-15 72.4
MS.gene92952.t1 AT5G15800 47.887 71 34 2 7 76 2 70 4.26e-15 72.4
MS.gene92952.t1 AT3G54340 29.747 158 85 5 7 162 2 135 4.47e-15 72.0
MS.gene92952.t1 AT4G11880 48.485 66 33 1 12 76 5 70 4.54e-15 72.0
MS.gene92952.t1 AT4G11880 48.485 66 33 1 12 76 5 70 4.54e-15 72.0
MS.gene92952.t1 AT3G58780 52.308 65 29 1 2 66 12 74 5.28e-15 72.4
MS.gene92952.t1 AT2G22540 32.026 153 72 5 9 156 2 127 5.95e-15 72.0
MS.gene92952.t1 AT5G20240 45.333 75 37 2 7 79 2 74 6.56e-15 71.2
MS.gene92952.t1 AT5G15800 47.887 71 34 2 7 76 2 70 7.08e-15 72.0
MS.gene92952.t1 AT5G20240 45.333 75 37 2 7 79 2 74 8.37e-15 69.7
MS.gene92952.t1 AT5G65050 46.377 69 36 1 9 76 2 70 8.74e-15 70.5
MS.gene92952.t1 AT5G65050 46.377 69 36 1 9 76 2 70 9.65e-15 70.5
MS.gene92952.t1 AT2G03710 41.111 90 44 4 7 89 2 89 1.02e-14 70.1
MS.gene92952.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.03e-14 70.1
MS.gene92952.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.06e-14 70.5
MS.gene92952.t1 AT1G28450 27.485 171 118 2 5 169 4 174 1.42e-14 69.7
MS.gene92952.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.43e-14 69.7
MS.gene92952.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.54e-14 70.1
MS.gene92952.t1 AT3G02310 46.479 71 35 2 7 76 2 70 1.66e-14 70.1
MS.gene92952.t1 AT5G23260 50.685 73 32 2 7 77 2 72 2.40e-14 70.5
MS.gene92952.t1 AT5G23260 50.685 73 32 2 7 77 18 88 2.49e-14 70.5
MS.gene92952.t1 AT5G23260 50.685 73 32 2 7 77 2 72 2.58e-14 70.1
MS.gene92952.t1 AT5G23260 50.685 73 32 2 7 77 18 88 2.58e-14 70.5
MS.gene92952.t1 AT2G03710 41.111 90 44 4 7 89 2 89 7.65e-14 68.9
MS.gene92952.t1 AT2G22630 42.857 70 38 1 7 76 2 69 7.71e-14 68.6
MS.gene92952.t1 AT2G22630 42.857 70 38 1 7 76 2 69 7.71e-14 68.6
MS.gene92952.t1 AT2G03710 41.111 90 44 4 7 89 2 89 8.05e-14 68.9
MS.gene92952.t1 AT3G02310 46.479 71 35 2 7 76 2 70 1.04e-13 68.6
MS.gene92952.t1 AT1G24260 45.070 71 36 2 7 76 2 70 1.06e-13 68.6
MS.gene92952.t1 AT1G24260 45.070 71 36 2 7 76 2 70 1.07e-13 68.6
MS.gene92952.t1 AT1G24260 45.070 71 36 2 7 76 2 70 1.24e-13 68.2
MS.gene92952.t1 AT5G65070 39.130 69 41 1 9 76 2 70 1.30e-13 66.2
MS.gene92952.t1 AT1G71692 44.776 67 36 1 12 77 5 71 1.76e-13 67.4
MS.gene92952.t1 AT1G17310 49.367 79 38 1 8 86 47 123 1.87e-13 67.4
MS.gene92952.t1 AT1G17310 49.367 79 38 1 8 86 58 134 2.44e-13 67.4
MS.gene92952.t1 AT5G65070 39.130 69 41 1 9 76 2 70 2.80e-13 66.6
MS.gene92952.t1 AT5G65070 39.130 69 41 1 9 76 2 70 5.77e-13 66.2
MS.gene92952.t1 AT5G65070 39.130 69 41 1 9 76 2 70 7.64e-13 65.5
MS.gene92952.t1 AT1G47760 38.806 67 41 0 9 75 2 68 1.13e-12 64.7
MS.gene92952.t1 AT1G18750 37.975 79 47 1 9 85 2 80 1.38e-12 66.6
MS.gene92952.t1 AT1G18750 37.975 79 47 1 9 85 2 80 1.45e-12 66.6
MS.gene92952.t1 AT1G18750 37.975 79 47 1 9 85 2 80 1.51e-12 66.2
MS.gene92952.t1 AT5G65070 43.860 57 32 0 9 65 2 58 3.81e-12 63.9
MS.gene92952.t1 AT5G65080 39.130 69 41 1 9 76 9 77 1.13e-11 62.0
MS.gene92952.t1 AT4G37435 39.437 71 42 1 9 78 2 72 2.47e-11 60.8
MS.gene92952.t1 AT5G65080 44.444 54 30 0 9 62 9 62 5.21e-11 60.5

Find 50 sgRNAs with CRISPR-Local

Find 61 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATATTGCCGCTGTTT+TGG 0.292316 1.2:-80659005 None:intergenic
TTGCAGCCTCATTTGTTTGA+TGG 0.293834 1.2:+80659384 MS.gene92952:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.317499 1.2:+80659162 MS.gene92952:CDS
TCACCATGGCTTCAATAATA+TGG 0.324358 1.2:+80659419 MS.gene92952:CDS
ATTTCAGCTTGTTGAGCATT+TGG 0.333852 1.2:-80659324 None:intergenic
TGAATTATTCAAGAAGGCTT+TGG 0.346261 1.2:+80659203 MS.gene92952:CDS
TTCATCACCAATCTTCTTCT+CGG 0.352424 1.2:-80659103 None:intergenic
AGCGAGCTTTGCACCCTTTG+TGG 0.373521 1.2:+80658877 MS.gene92952:CDS
GTCTATGACCGTATCTAGAT+TGG 0.408746 1.2:-80658959 None:intergenic
TCCGGTTGATGGGATGAATA+GGG 0.429925 1.2:+80659173 MS.gene92952:CDS
GTCCGGTTGATGGGATGAAT+AGG 0.433236 1.2:+80659172 MS.gene92952:CDS
TCTATGACCGTATCTAGATT+GGG 0.437088 1.2:-80658958 None:intergenic
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 1.2:+80659163 MS.gene92952:CDS
AGGAAGCGAAGGCTAAGTTT+TGG 0.466330 1.2:+80659142 MS.gene92952:CDS
GTTGAGCATTTGGCTGATGA+TGG 0.467757 1.2:-80659314 None:intergenic
TCCCTATTCATCCCATCAAC+CGG 0.481029 1.2:-80659174 None:intergenic
ATGGATTCCGAGAAGAAGAT+TGG 0.482353 1.2:+80659096 MS.gene92952:CDS
TCAACTTGAATTATTCAAGA+AGG 0.483881 1.2:+80659197 MS.gene92952:CDS
TGAGGCTGCAATTGCAACAT+AGG 0.486430 1.2:-80659372 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.492573 1.2:-80658890 None:intergenic
CTTTCTTGAAGAGCCCGCTA+TGG 0.502837 1.2:-80658852 None:intergenic
CTTTCTCAAAGCGCCATAGC+GGG 0.513783 1.2:+80658839 MS.gene92952:CDS
ATTATTCAAGAAGGCTTTGG+AGG 0.515397 1.2:+80659206 MS.gene92952:CDS
GCCTTTCTTTCCGCTCGACA+TGG 0.518203 1.2:-80658758 None:intergenic
ACAAAGGGTGCAAAGCTCGC+TGG 0.525634 1.2:-80658875 None:intergenic
GCCATGTCGAGCGGAAAGAA+AGG 0.533373 1.2:+80658757 None:intergenic
ATGATGGAGATAAATGTTCA+AGG 0.538047 1.2:-80659298 None:intergenic
ACACCATATTATTGAAGCCA+TGG 0.549763 1.2:-80659422 None:intergenic
ATCTAGATTGGGGTGACCAA+AGG 0.558412 1.2:-80658947 None:intergenic
CAATTTGCGCAAGGAAGCGA+AGG 0.560140 1.2:+80659131 MS.gene92952:CDS
ATTGATCCATCAAACAAATG+AGG 0.563188 1.2:-80659390 None:intergenic
GAGGCTGCAATTGCAACATA+GGG 0.578323 1.2:-80659371 None:intergenic
CTCGTTGTATTCTCACCTAG+TGG 0.580084 1.2:+80658913 MS.gene92952:CDS
GTGGGATGAGAGAAAGATAA+CGG 0.595828 1.2:-80658981 None:intergenic
TGGTCACCCCAATCTAGATA+CGG 0.596673 1.2:+80658951 MS.gene92952:CDS
TCGAGCGGAAAGAAAGGCCG+AGG 0.597603 1.2:+80658763 MS.gene92952:CDS
TGTATTCTCACCTAGTGGAA+AGG 0.611194 1.2:+80658918 MS.gene92952:CDS
CGGCAATATGCAATTCATTG+AGG 0.615197 1.2:+80659014 MS.gene92952:CDS
AAGGAAAATACCTTTCCACT+AGG 0.624124 1.2:-80658928 None:intergenic
GTTCACGCACGTTGGCATTG+CGG 0.624339 1.2:-80659041 None:intergenic
CTATGACCGTATCTAGATTG+GGG 0.625840 1.2:-80658957 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.629318 1.2:-80658891 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 1.2:-80659417 None:intergenic
TGAACTGAGCAATTTGCGCA+AGG 0.650320 1.2:+80659122 MS.gene92952:CDS
CTCATCCCACCCCAAAACAG+CGG 0.653894 1.2:+80658994 MS.gene92952:CDS
TGTGCTTTAGCCATGTCGAG+CGG 0.654169 1.2:+80658748 None:intergenic
GACTCAAATCAACAACACAA+TGG 0.654879 1.2:+80659077 MS.gene92952:CDS
AGCATTGAGTTCACGCACGT+TGG 0.662077 1.2:-80659049 None:intergenic
ACTTTCTCAAAGCGCCATAG+CGG 0.689169 1.2:+80658838 MS.gene92952:CDS
GGATCAATGATGCCTCACCA+TGG 0.734402 1.2:+80659405 MS.gene92952:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TCAACTTGAATTATTCAAGA+AGG + chr1.2:80659197-80659216 MS.gene92952:CDS 25.0%
!!! ATAGGGTTTTGAAAAAAATG+TGG - chr1.2:80659357-80659376 None:intergenic 25.0%
ATTGATCCATCAAACAAATG+AGG - chr1.2:80659393-80659412 None:intergenic 30.0%
TGAATTATTCAAGAAGGCTT+TGG + chr1.2:80659203-80659222 MS.gene92952:CDS 30.0%
! ATGATGGAGATAAATGTTCA+AGG - chr1.2:80659301-80659320 None:intergenic 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG - chr1.2:80658792-80658811 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG - chr1.2:80658931-80658950 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG - chr1.2:80659425-80659444 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG - chr1.2:80659420-80659439 None:intergenic 35.0%
GACTCAAATCAACAACACAA+TGG + chr1.2:80659077-80659096 MS.gene92952:CDS 35.0%
TCACCATGGCTTCAATAATA+TGG + chr1.2:80659419-80659438 MS.gene92952:CDS 35.0%
TCTATGACCGTATCTAGATT+GGG - chr1.2:80658961-80658980 None:intergenic 35.0%
TTCATCACCAATCTTCTTCT+CGG - chr1.2:80659106-80659125 None:intergenic 35.0%
! ATTATTCAAGAAGGCTTTGG+AGG + chr1.2:80659206-80659225 MS.gene92952:CDS 35.0%
!! ATTTCAGCTTGTTGAGCATT+TGG - chr1.2:80659327-80659346 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG + chr1.2:80658931-80658950 MS.gene92952:CDS 35.0%
!!! CGAACACTTCCATTTTTTGT+TGG + chr1.2:80659264-80659283 MS.gene92952:CDS 35.0%
!!! GGGTTTTGAAAAAAATGTGG+TGG - chr1.2:80659354-80659373 None:intergenic 35.0%
ATGGATTCCGAGAAGAAGAT+TGG + chr1.2:80659096-80659115 MS.gene92952:CDS 40.0%
CGGCAATATGCAATTCATTG+AGG + chr1.2:80659014-80659033 MS.gene92952:CDS 40.0%
CTATGACCGTATCTAGATTG+GGG - chr1.2:80658960-80658979 None:intergenic 40.0%
GTCTATGACCGTATCTAGAT+TGG - chr1.2:80658962-80658981 None:intergenic 40.0%
GTGGGATGAGAGAAAGATAA+CGG - chr1.2:80658984-80659003 None:intergenic 40.0%
TGTATTCTCACCTAGTGGAA+AGG + chr1.2:80658918-80658937 MS.gene92952:CDS 40.0%
TTGCAGCCTCATTTGTTTGA+TGG + chr1.2:80659384-80659403 MS.gene92952:CDS 40.0%
! ATTGCATATTGCCGCTGTTT+TGG - chr1.2:80659008-80659027 None:intergenic 40.0%
!! GAAGCGTTGCCAACAAAAAA+TGG - chr1.2:80659276-80659295 None:intergenic 40.0%
!! TTGCATATTGCCGCTGTTTT+GGG - chr1.2:80659007-80659026 None:intergenic 40.0%
ATCTAGATTGGGGTGACCAA+AGG - chr1.2:80658950-80658969 None:intergenic 45.0%
CTCGTTGTATTCTCACCTAG+TGG + chr1.2:80658913-80658932 MS.gene92952:CDS 45.0%
GAGGCTGCAATTGCAACATA+GGG - chr1.2:80659374-80659393 None:intergenic 45.0%
GTTGAGCATTTGGCTGATGA+TGG - chr1.2:80659317-80659336 None:intergenic 45.0%
TCCCTATTCATCCCATCAAC+CGG - chr1.2:80659177-80659196 None:intergenic 45.0%
TGAACTGAGCAATTTGCGCA+AGG + chr1.2:80659122-80659141 MS.gene92952:CDS 45.0%
TGAGGCTGCAATTGCAACAT+AGG - chr1.2:80659375-80659394 None:intergenic 45.0%
TGGTCACCCCAATCTAGATA+CGG + chr1.2:80658951-80658970 MS.gene92952:CDS 45.0%
! ACTTTCTCAAAGCGCCATAG+CGG + chr1.2:80658838-80658857 MS.gene92952:CDS 45.0%
! AGGAAGCGAAGGCTAAGTTT+TGG + chr1.2:80659142-80659161 MS.gene92952:CDS 45.0%
!! AAGCGAAGGCTAAGTTTTGG+TGG + chr1.2:80659145-80659164 MS.gene92952:CDS 45.0%
!! AGCGAAGGCTAAGTTTTGGT+GGG + chr1.2:80659146-80659165 MS.gene92952:CDS 45.0%
!! TCCGGTTGATGGGATGAATA+GGG + chr1.2:80659173-80659192 MS.gene92952:CDS 45.0%
!! TCTCGATCTTTTGGTGACCT+CGG - chr1.2:80658783-80658802 None:intergenic 45.0%
!! TGCATATTGCCGCTGTTTTG+GGG - chr1.2:80659006-80659025 None:intergenic 45.0%
!!! TAAGTTTTGGTGGGCTTGTC+CGG + chr1.2:80659155-80659174 MS.gene92952:CDS 45.0%
AGCAGCATCTGCACCACAAA+GGG - chr1.2:80658893-80658912 None:intergenic 50.0%
CAATTTGCGCAAGGAAGCGA+AGG + chr1.2:80659131-80659150 MS.gene92952:CDS 50.0%
CTTTCTTGAAGAGCCCGCTA+TGG - chr1.2:80658855-80658874 None:intergenic 50.0%
GGATCAATGATGCCTCACCA+TGG + chr1.2:80659405-80659424 MS.gene92952:CDS 50.0%
! AGCATTGAGTTCACGCACGT+TGG - chr1.2:80659052-80659071 None:intergenic 50.0%
! CTTTCTCAAAGCGCCATAGC+GGG + chr1.2:80658839-80658858 MS.gene92952:CDS 50.0%
!! GTCCGGTTGATGGGATGAAT+AGG + chr1.2:80659172-80659191 MS.gene92952:CDS 50.0%
!!! ATATTGCCGCTGTTTTGGGG+TGG - chr1.2:80659003-80659022 None:intergenic 50.0%
!!! TATTGCCGCTGTTTTGGGGT+GGG - chr1.2:80659002-80659021 None:intergenic 50.0%
AGCGAGCTTTGCACCCTTTG+TGG + chr1.2:80658877-80658896 MS.gene92952:CDS 55.0%
CTCATCCCACCCCAAAACAG+CGG + chr1.2:80658994-80659013 MS.gene92952:CDS 55.0%
GAGCAGCATCTGCACCACAA+AGG - chr1.2:80658894-80658913 None:intergenic 55.0%
GTTCACGCACGTTGGCATTG+CGG - chr1.2:80659044-80659063 None:intergenic 55.0%
! ACAAAGGGTGCAAAGCTCGC+TGG - chr1.2:80658878-80658897 None:intergenic 55.0%
TCGAGCGGAAAGAAAGGCCG+AGG + chr1.2:80658763-80658782 MS.gene92952:CDS 60.0%
! GGTGGGCTTGTCCGGTTGAT+GGG + chr1.2:80659163-80659182 MS.gene92952:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + chr1.2:80659162-80659181 MS.gene92952:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 80658760 80659446 80658760 ID=MS.gene92952
chr1.2 mRNA 80658760 80659446 80658760 ID=MS.gene92952.t1;Parent=MS.gene92952
chr1.2 exon 80658760 80659446 80658760 ID=MS.gene92952.t1.exon1;Parent=MS.gene92952.t1
chr1.2 CDS 80658760 80659446 80658760 ID=cds.MS.gene92952.t1;Parent=MS.gene92952.t1
Gene Sequence

>MS.gene92952

ATGTCGAGCGGAAAGAAAGGCCGAGGTCACCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACTTGCAAGTTACTTTCTCAAAGCGCCATAGCGGGCTCTTCAAGAAAGCCAGCGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTAGATACGGTCATAGACCGTTATCTTTCTCTCATCCCACCCCAAAACAGCGGCAATATGCAATTCATTGAGGCTAACCGCAATGCCAACGTGCGTGAACTCAATGCTCAGCTGACTCAAATCAACAACACAATGGATTCCGAGAAGAAGATTGGTGATGAACTGAGCAATTTGCGCAAGGAAGCGAAGGCTAAGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAGAAGGCTTTGGAGGAGCTTAAGAAACTTGTAATTCAGCATGCTGCAACTCGAACACTTCCATTTTTTGTTGGCAACGCTTCTTCCTTGAACATTTATCTCCATCATCAGCCAAATGCTCAACAAGCTGAAATGTTGCCACCACATTTTTTTCAAAACCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene92952.t1

MSSGKKGRGHQKIEMKKMSNESNLQVTFSKRHSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVIDRYLSLIPPQNSGNMQFIEANRNANVRELNAQLTQINNTMDSEKKIGDELSNLRKEAKAKFWWACPVDGMNRDQLELFKKALEELKKLVIQHAATRTLPFFVGNASSLNIYLHHQPNAQQAEMLPPHFFQNPMLQLQPHLFDGSMMPHHGFNNMV