AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92953

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92953.t1 MTR_1g108510 94.298 228 13 0 1 228 1 228 3.17e-163 450
MS.gene92953.t1 MTR_3g030770 93.860 228 14 0 1 228 1 228 2.34e-161 445
MS.gene92953.t1 MTR_2g093190 86.842 228 30 0 1 228 1 228 8.25e-150 416
MS.gene92953.t1 MTR_1g108580 83.333 228 38 0 1 228 1 228 3.22e-143 399
MS.gene92953.t1 MTR_1g105920 76.471 221 42 2 1 213 1 219 6.75e-117 333
MS.gene92953.t1 MTR_8g043650 74.537 216 47 1 1 208 1 216 3.41e-112 321
MS.gene92953.t1 MTR_1g105910 68.936 235 55 3 1 227 1 225 2.63e-110 316
MS.gene92953.t1 MTR_2g030740 72.398 221 51 2 1 213 1 219 3.50e-110 316
MS.gene92953.t1 MTR_1g012570 71.493 221 53 2 1 213 1 219 5.56e-108 310
MS.gene92953.t1 MTR_3g052920 71.041 221 54 2 1 213 1 219 9.47e-108 310
MS.gene92953.t1 MTR_0121s0080 65.532 235 63 3 1 227 1 225 1.11e-102 297
MS.gene92953.t1 MTR_1g075600 64.255 235 66 3 1 227 1 225 1.77e-99 289
MS.gene92953.t1 MTR_1g077360 62.128 235 71 3 1 227 1 225 3.94e-96 280
MS.gene92953.t1 MTR_5g045560 62.128 235 71 3 1 227 1 225 4.42e-95 278
MS.gene92953.t1 MTR_5g053390 62.128 235 71 3 1 227 1 225 1.50e-94 276
MS.gene92953.t1 MTR_3g052870 66.968 221 44 4 1 213 1 200 5.03e-94 275
MS.gene92953.t1 MTR_1g105905 64.679 218 59 3 18 227 1 208 4.35e-93 272
MS.gene92953.t1 MTR_5g055100 60.426 235 75 3 1 227 1 225 4.33e-92 270
MS.gene92953.t1 MTR_1g106070 73.077 182 41 1 1 174 1 182 6.91e-91 265
MS.gene92953.t1 MTR_2g085280 59.149 235 78 3 1 227 1 225 3.33e-89 263
MS.gene92953.t1 MTR_2g085250 59.912 227 81 2 1 219 1 225 5.94e-89 262
MS.gene92953.t1 MTR_7g062350 61.086 221 67 4 16 227 27 237 3.20e-83 248
MS.gene92953.t1 MTR_0121s0100 83.333 132 22 0 1 132 1 132 7.09e-75 223
MS.gene92953.t1 MTR_3g030780 70.455 132 39 0 1 132 1 132 9.00e-63 192
MS.gene92953.t1 MTR_3g080940 53.714 175 79 1 9 183 9 181 6.01e-61 190
MS.gene92953.t1 MTR_1g075570 56.180 178 56 2 18 187 1 164 5.12e-51 163
MS.gene92953.t1 MTR_8g086290 43.636 165 83 2 5 166 8 165 7.50e-40 135
MS.gene92953.t1 MTR_3g067910 60.194 103 41 0 21 123 2 104 1.56e-37 127
MS.gene92953.t1 MTR_2g105290 40.000 165 89 2 5 166 8 165 1.37e-35 124
MS.gene92953.t1 MTR_7g028448 41.317 167 86 3 5 171 8 162 7.90e-31 112
MS.gene92953.t1 MTR_4g036915 41.317 167 86 3 5 171 8 162 7.90e-31 112
MS.gene92953.t1 MTR_1g108500 55.752 113 27 2 8 118 94 185 1.08e-29 113
MS.gene92953.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 2.64e-26 97.4
MS.gene92953.t1 MTR_4g127140 38.286 175 88 4 5 166 8 175 4.20e-26 100
MS.gene92953.t1 MTR_1g063160 53.247 77 36 0 9 85 2 78 5.47e-24 94.7
MS.gene92953.t1 MTR_1g054265 51.948 77 37 0 9 85 2 78 3.56e-23 92.0
MS.gene92953.t1 MTR_8g079502 56.522 69 30 0 9 77 2 70 3.74e-23 92.4
MS.gene92953.t1 MTR_1g047550 56.522 69 30 0 9 77 2 70 5.32e-23 92.0
MS.gene92953.t1 MTR_8g051580 38.889 126 61 3 9 133 2 112 4.97e-22 89.4
MS.gene92953.t1 MTR_4g131030 35.294 136 73 2 9 129 2 137 1.39e-21 89.4
MS.gene92953.t1 MTR_3g067915 46.809 94 50 0 33 126 3 96 1.58e-21 85.9
MS.gene92953.t1 MTR_3g067870 67.213 61 20 0 16 76 83 143 3.06e-21 86.7
MS.gene92953.t1 MTR_8g046350 38.462 130 72 4 9 135 2 126 6.08e-21 86.3
MS.gene92953.t1 MTR_3g005530 54.412 68 31 0 9 76 2 69 1.69e-20 86.7
MS.gene92953.t1 MTR_4g094638 41.284 109 57 2 9 113 2 107 2.64e-20 84.7
MS.gene92953.t1 MTR_4g102530 55.224 67 30 0 10 76 3 69 1.20e-19 84.0
MS.gene92953.t1 MTR_8g033270 45.556 90 44 2 9 97 2 87 1.22e-19 84.7
MS.gene92953.t1 MTR_4g094632 38.679 106 63 1 9 114 2 105 2.32e-19 82.0
MS.gene92953.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 3.99e-19 83.2
MS.gene92953.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 4.11e-19 82.8
MS.gene92953.t1 MTR_3g452380 48.649 74 38 0 3 76 11 84 7.20e-19 82.4
MS.gene92953.t1 MTR_3g102570 42.157 102 56 2 9 109 2 101 7.42e-19 83.6
MS.gene92953.t1 MTR_1g101970 52.941 68 32 0 9 76 2 69 1.11e-18 80.9
MS.gene92953.t1 MTR_1g053070 52.941 68 32 0 9 76 2 69 1.65e-18 81.6
MS.gene92953.t1 MTR_4g109830 49.275 69 34 1 9 76 2 70 2.61e-18 80.9
MS.gene92953.t1 MTR_0003s0590 52.941 68 32 0 9 76 2 69 2.84e-18 81.3
MS.gene92953.t1 MTR_5g032150 50.000 68 34 0 9 76 2 69 3.18e-18 80.5
MS.gene92953.t1 MTR_5g032520 50.000 68 34 0 9 76 2 69 3.43e-18 80.5
MS.gene92953.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 4.13e-18 80.5
MS.gene92953.t1 MTR_2g009890 50.000 68 34 0 9 76 2 69 4.30e-18 81.3
MS.gene92953.t1 MTR_7g075870 48.148 81 38 1 10 86 3 83 4.56e-18 79.7
MS.gene92953.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 5.68e-18 80.1
MS.gene92953.t1 MTR_8g033220 52.174 69 33 0 10 78 3 71 5.80e-18 79.7
MS.gene92953.t1 MTR_8g033220 52.174 69 33 0 10 78 3 71 6.18e-18 79.7
MS.gene92953.t1 MTR_2g017865 51.471 68 33 0 9 76 17 84 9.74e-18 79.7
MS.gene92953.t1 MTR_8g022970 34.839 155 94 3 8 159 17 167 1.25e-17 77.8
MS.gene92953.t1 MTR_7g016600 52.113 71 31 2 7 76 2 70 3.14e-17 78.2
MS.gene92953.t1 MTR_6g015975 50.725 69 33 1 9 76 2 70 3.43e-17 78.2
MS.gene92953.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 3.89e-17 77.8
MS.gene92953.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 4.16e-17 77.4
MS.gene92953.t1 MTR_8g066260 47.826 69 35 1 9 76 2 70 7.45e-17 77.0
MS.gene92953.t1 MTR_7g075870 47.561 82 38 2 10 86 3 84 8.26e-17 76.3
MS.gene92953.t1 MTR_7g075850 43.182 88 48 1 9 94 2 89 1.14e-16 76.6
MS.gene92953.t1 MTR_5g046870 49.275 69 34 1 9 76 2 70 1.52e-16 73.2
MS.gene92953.t1 MTR_4g084740 49.367 79 38 2 9 86 2 79 1.64e-16 77.4
MS.gene92953.t1 MTR_2g461710 57.143 56 24 0 9 64 2 57 2.02e-16 71.2
MS.gene92953.t1 MTR_3g088615 48.571 70 34 1 9 76 2 71 2.29e-16 74.3
MS.gene92953.t1 MTR_1g038300 50.000 70 33 1 9 76 2 71 4.04e-16 75.1
MS.gene92953.t1 MTR_7g016630 44.928 69 37 1 9 76 2 70 4.14e-16 75.5
MS.gene92953.t1 MTR_5g046790 44.928 69 37 1 9 76 2 70 5.55e-16 74.3
MS.gene92953.t1 MTR_1g029670 47.143 70 35 1 9 76 2 71 1.13e-15 72.8
MS.gene92953.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 1.94e-15 73.2
MS.gene92953.t1 MTR_5g021270 51.429 70 32 1 9 76 2 71 2.04e-15 73.2
MS.gene92953.t1 MTR_3g084980 57.143 56 24 0 9 64 2 57 2.26e-15 73.2
MS.gene92953.t1 MTR_8g097090 47.826 69 35 1 9 76 2 70 2.38e-15 73.2
MS.gene92953.t1 MTR_4g109810 53.571 56 26 0 9 64 2 57 3.75e-15 72.4
MS.gene92953.t1 MTR_3g113030 47.143 70 35 1 9 76 2 71 1.21e-14 70.9
MS.gene92953.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.61e-14 66.2
MS.gene92953.t1 MTR_3g109930 32.847 137 82 2 27 159 20 150 2.70e-14 68.9
MS.gene92953.t1 MTR_3g437790 34.000 150 68 6 26 159 30 164 8.34e-14 67.8
MS.gene92953.t1 MTR_4g108720 30.357 168 103 6 9 164 2 167 8.43e-14 69.7
MS.gene92953.t1 MTR_1g041615 36.449 107 59 2 20 125 17 115 1.65e-13 65.9
MS.gene92953.t1 MTR_4g051538 30.247 162 100 3 5 166 5 153 1.07e-12 65.5
MS.gene92953.t1 MTR_4g093030 40.909 88 36 2 9 80 2 89 1.91e-12 63.5
MS.gene92953.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.24e-12 63.5
MS.gene92953.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.25e-12 63.9
MS.gene92953.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.30e-12 63.9
MS.gene92953.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.44e-12 63.9
MS.gene92953.t1 MTR_5g041650 39.189 74 43 1 9 80 39 112 8.43e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92953.t1 AT5G60440 54.348 184 78 3 5 182 3 186 1.02e-59 190
MS.gene92953.t1 AT2G24840 44.949 198 82 5 9 184 63 255 7.30e-44 148
MS.gene92953.t1 AT4G36590 43.850 187 91 5 5 179 3 187 9.12e-40 137
MS.gene92953.t1 AT1G65360 42.308 182 98 4 5 181 3 182 1.31e-38 134
MS.gene92953.t1 AT1G01530 43.478 184 96 4 4 183 2 181 1.58e-38 134
MS.gene92953.t1 AT2G34440 36.242 149 91 3 9 156 2 147 3.19e-26 100
MS.gene92953.t1 AT3G04100 32.105 190 117 3 2 183 7 192 7.00e-26 100
MS.gene92953.t1 AT3G66656 38.583 127 74 1 9 131 2 128 2.49e-23 92.8
MS.gene92953.t1 AT1G72350 34.104 173 74 5 9 174 43 182 9.82e-23 92.4
MS.gene92953.t1 AT4G09960 38.519 135 75 3 9 137 2 134 3.68e-22 90.9
MS.gene92953.t1 AT4G09960 37.956 137 77 3 9 139 3 137 4.79e-22 90.9
MS.gene92953.t1 AT4G09960 37.956 137 77 3 9 139 2 136 5.22e-22 90.9
MS.gene92953.t1 AT4G09960 38.519 135 75 3 9 137 12 144 5.96e-22 90.9
MS.gene92953.t1 AT4G09960 37.956 137 77 3 9 139 28 162 8.87e-22 90.5
MS.gene92953.t1 AT4G09960 38.636 132 73 3 9 134 97 226 3.94e-21 90.1
MS.gene92953.t1 AT2G45660 35.404 161 86 5 10 160 3 155 1.12e-20 85.5
MS.gene92953.t1 AT2G45650 54.412 68 31 0 9 76 2 69 2.88e-20 86.7
MS.gene92953.t1 AT2G45660 35.404 161 86 5 10 160 3 155 3.37e-20 85.5
MS.gene92953.t1 AT1G28460 30.769 169 112 3 5 169 4 171 5.74e-20 84.3
MS.gene92953.t1 AT4G24540 36.486 148 77 4 9 156 2 132 8.35e-20 84.7
MS.gene92953.t1 AT1G29962 29.825 171 114 2 5 169 4 174 8.49e-20 84.0
MS.gene92953.t1 AT5G51870 56.716 67 29 0 10 76 3 69 1.91e-19 82.4
MS.gene92953.t1 AT5G51870 56.716 67 29 0 10 76 3 69 2.77e-19 82.8
MS.gene92953.t1 AT3G57230 48.529 68 35 0 9 76 2 69 3.82e-19 80.9
MS.gene92953.t1 AT5G51870 54.167 72 33 0 5 76 21 92 4.10e-19 82.4
MS.gene92953.t1 AT2G22540 52.941 68 32 0 9 76 2 69 4.25e-19 83.2
MS.gene92953.t1 AT2G22540 52.941 68 32 0 9 76 2 69 4.25e-19 83.2
MS.gene92953.t1 AT5G51870 56.716 67 29 0 10 76 3 69 5.30e-19 82.4
MS.gene92953.t1 AT5G51870 56.716 67 29 0 10 76 13 79 6.65e-19 82.4
MS.gene92953.t1 AT5G10140 53.623 69 31 1 9 76 2 70 7.87e-19 80.9
MS.gene92953.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.08e-18 82.0
MS.gene92953.t1 AT5G10140 53.623 69 31 1 9 76 2 70 1.10e-18 80.9
MS.gene92953.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.15e-18 81.6
MS.gene92953.t1 AT4G18960 41.000 100 49 1 9 108 18 107 1.38e-18 82.0
MS.gene92953.t1 AT5G13790 54.412 68 31 0 9 76 2 69 1.40e-18 82.4
MS.gene92953.t1 AT5G10140 53.623 69 31 1 9 76 2 70 1.41e-18 80.9
MS.gene92953.t1 AT3G57230 48.529 68 35 0 9 76 2 69 1.45e-18 81.6
MS.gene92953.t1 AT3G57230 48.529 68 35 0 9 76 2 69 1.45e-18 81.6
MS.gene92953.t1 AT5G13790 54.412 68 31 0 9 76 2 69 1.50e-18 82.4
MS.gene92953.t1 AT5G10140 53.623 69 31 1 9 76 2 70 1.51e-18 80.5
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.67e-18 79.7
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.67e-18 79.7
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.67e-18 79.7
MS.gene92953.t1 AT4G37940 50.000 68 34 0 9 76 2 69 1.90e-18 80.1
MS.gene92953.t1 AT3G57390 51.471 68 33 0 9 76 2 69 1.96e-18 81.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.96e-18 79.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.96e-18 79.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.96e-18 79.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.96e-18 79.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 1.96e-18 79.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 2.02e-18 78.2
MS.gene92953.t1 AT2G42830 49.333 75 36 1 2 76 12 84 2.05e-18 81.6
MS.gene92953.t1 AT2G42830 49.333 75 36 1 2 76 12 84 2.05e-18 81.6
MS.gene92953.t1 AT4G22950 45.455 77 42 0 10 86 3 79 2.90e-18 79.3
MS.gene92953.t1 AT3G58780 49.333 75 36 1 2 76 12 84 4.16e-18 80.5
MS.gene92953.t1 AT3G57390 51.471 68 33 0 9 76 2 69 4.34e-18 80.9
MS.gene92953.t1 AT3G58780 49.333 75 36 1 2 76 18 90 5.66e-18 80.5
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.82e-18 79.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 5.82e-18 79.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.89e-18 79.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.89e-18 79.3
MS.gene92953.t1 AT5G62165 52.239 67 32 0 10 76 3 69 6.89e-18 79.3
MS.gene92953.t1 AT3G58780 49.333 75 36 1 2 76 12 84 7.78e-18 80.5
MS.gene92953.t1 AT5G23260 47.312 93 43 2 5 91 14 106 1.13e-17 79.7
MS.gene92953.t1 AT5G23260 47.312 93 43 2 5 91 14 106 1.32e-17 79.7
MS.gene92953.t1 AT4G22950 50.746 67 33 0 10 76 3 69 1.56e-17 78.6
MS.gene92953.t1 AT4G22950 50.746 67 33 0 10 76 3 69 1.56e-17 78.6
MS.gene92953.t1 AT3G61120 45.122 82 44 1 9 89 2 83 1.83e-17 79.0
MS.gene92953.t1 AT3G30260 47.826 69 35 1 9 76 2 70 2.12e-17 79.0
MS.gene92953.t1 AT1G26310 50.704 71 32 2 7 76 2 70 2.21e-17 79.0
MS.gene92953.t1 AT5G51860 52.239 67 32 0 10 76 3 69 2.32e-17 77.8
MS.gene92953.t1 AT5G23260 48.315 89 40 2 9 91 2 90 2.56e-17 78.6
MS.gene92953.t1 AT5G23260 48.315 89 40 2 9 91 2 90 2.92e-17 78.2
MS.gene92953.t1 AT5G51860 52.239 67 32 0 10 76 3 69 3.07e-17 77.4
MS.gene92953.t1 AT2G14210 47.826 69 35 1 9 76 2 70 4.62e-17 77.4
MS.gene92953.t1 AT5G60910 49.275 69 34 1 9 76 2 70 5.51e-17 77.4
MS.gene92953.t1 AT2G14210 47.826 69 35 1 9 76 2 70 5.94e-17 77.4
MS.gene92953.t1 AT5G65050 49.275 69 34 1 9 76 2 70 6.44e-17 75.9
MS.gene92953.t1 AT5G15800 50.725 69 33 1 9 76 2 70 7.51e-17 77.4
MS.gene92953.t1 AT4G11880 51.471 68 32 1 10 76 3 70 7.92e-17 75.9
MS.gene92953.t1 AT4G11880 51.471 68 32 1 10 76 3 70 7.92e-17 75.9
MS.gene92953.t1 AT1G69120 47.887 71 34 2 7 76 2 70 9.35e-17 76.6
MS.gene92953.t1 AT1G77980 51.389 72 34 1 9 79 2 73 1.02e-16 78.2
MS.gene92953.t1 AT2G22540 51.471 68 28 1 9 76 2 64 1.05e-16 76.6
MS.gene92953.t1 AT5G20240 47.945 73 36 1 9 79 2 74 1.23e-16 74.3
MS.gene92953.t1 AT5G15800 50.725 69 33 1 9 76 2 70 1.42e-16 76.6
MS.gene92953.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.46e-16 76.6
MS.gene92953.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.46e-16 76.6
MS.gene92953.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.46e-16 76.6
MS.gene92953.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.46e-16 76.6
MS.gene92953.t1 AT5G20240 47.945 73 36 1 9 79 2 74 1.71e-16 75.5
MS.gene92953.t1 AT4G11880 51.471 68 32 1 10 76 3 70 1.75e-16 75.9
MS.gene92953.t1 AT4G11880 51.471 68 32 1 10 76 3 70 1.75e-16 75.9
MS.gene92953.t1 AT1G22130 48.750 80 39 2 9 87 2 80 1.93e-16 77.4
MS.gene92953.t1 AT5G65050 49.275 69 34 1 9 76 2 70 1.96e-16 75.1
MS.gene92953.t1 AT5G65050 49.275 69 34 1 9 76 2 70 2.07e-16 74.7
MS.gene92953.t1 AT5G65050 49.275 69 34 1 9 76 2 70 2.50e-16 74.3
MS.gene92953.t1 AT1G69120 46.377 69 36 1 9 76 2 70 2.78e-16 75.9
MS.gene92953.t1 AT5G65060 47.826 69 35 1 9 76 2 70 3.99e-16 74.3
MS.gene92953.t1 AT3G02310 49.275 69 34 1 9 76 2 70 4.63e-16 74.3
MS.gene92953.t1 AT5G65070 31.915 141 78 4 9 136 2 137 5.02e-16 72.8
MS.gene92953.t1 AT1G28450 29.651 172 113 5 5 169 4 174 5.36e-16 73.6
MS.gene92953.t1 AT5G65060 47.826 69 35 1 9 76 2 70 5.95e-16 73.6
MS.gene92953.t1 AT5G65060 47.826 69 35 1 9 76 2 70 6.49e-16 73.6
MS.gene92953.t1 AT3G54340 46.575 73 37 1 9 79 2 74 7.64e-16 74.3
MS.gene92953.t1 AT3G58780 52.308 65 29 1 2 66 12 74 9.01e-16 74.3
MS.gene92953.t1 AT2G03710 48.571 70 34 2 9 76 2 71 9.84e-16 73.2
MS.gene92953.t1 AT3G58780 52.308 65 29 1 2 66 12 74 1.33e-15 74.3
MS.gene92953.t1 AT3G02310 49.275 69 34 1 9 76 2 70 1.66e-15 73.6
MS.gene92953.t1 AT5G65070 39.326 89 52 2 9 96 2 89 1.99e-15 72.4
MS.gene92953.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.00e-15 73.2
MS.gene92953.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.00e-15 73.2
MS.gene92953.t1 AT1G24260 47.826 69 35 1 9 76 2 70 2.98e-15 72.8
MS.gene92953.t1 AT1G24260 47.826 69 35 1 9 76 2 70 3.02e-15 72.8
MS.gene92953.t1 AT1G24260 47.826 69 35 1 9 76 2 70 3.24e-15 72.8
MS.gene92953.t1 AT2G03710 48.571 70 34 2 9 76 2 71 3.72e-15 72.8
MS.gene92953.t1 AT2G03710 48.571 70 34 2 9 76 2 71 3.96e-15 72.8
MS.gene92953.t1 AT1G17310 55.405 74 31 1 8 81 47 118 5.22e-15 71.6
MS.gene92953.t1 AT1G17310 55.405 74 31 1 8 81 58 129 7.58e-15 71.2
MS.gene92953.t1 AT5G65070 43.478 69 38 1 9 76 2 70 1.20e-14 70.9
MS.gene92953.t1 AT1G71692 44.928 69 37 1 10 77 3 71 1.23e-14 70.5
MS.gene92953.t1 AT5G65070 43.478 69 38 1 9 76 2 70 1.53e-14 70.1
MS.gene92953.t1 AT1G47760 41.791 67 39 0 9 75 2 68 3.09e-14 68.9
MS.gene92953.t1 AT1G18750 41.333 75 42 1 9 81 2 76 5.82e-14 70.5
MS.gene92953.t1 AT1G18750 41.333 75 42 1 9 81 2 76 6.92e-14 70.5
MS.gene92953.t1 AT1G18750 41.333 75 42 1 9 81 2 76 7.65e-14 70.1
MS.gene92953.t1 AT5G65070 49.123 57 29 0 9 65 2 58 8.69e-14 68.6
MS.gene92953.t1 AT5G65080 42.029 69 39 1 9 76 9 77 3.24e-13 66.2
MS.gene92953.t1 AT4G37435 33.065 124 72 3 9 131 2 115 5.87e-13 65.5
MS.gene92953.t1 AT5G65080 48.148 54 28 0 9 62 9 62 1.61e-12 64.7
MS.gene92953.t1 AT5G49490 38.947 95 50 3 5 92 41 134 1.87e-12 65.5
MS.gene92953.t1 AT5G49420 38.043 92 50 2 5 89 3 94 2.70e-12 65.5
MS.gene92953.t1 AT1G77080 49.275 69 34 1 9 76 2 70 5.86e-12 62.4
MS.gene92953.t1 AT2G03060 27.976 168 100 7 9 159 2 165 6.09e-12 64.7
MS.gene92953.t1 AT2G03060 27.976 168 100 7 9 159 2 165 6.09e-12 64.7
MS.gene92953.t1 AT2G03060 27.976 168 100 7 9 159 2 165 6.09e-12 64.7
MS.gene92953.t1 AT1G77080 49.275 69 34 1 9 76 2 70 6.22e-12 62.4
MS.gene92953.t1 AT2G03060 27.976 168 100 7 9 159 2 165 6.59e-12 64.7
MS.gene92953.t1 AT1G69540 41.892 74 42 1 9 81 2 75 8.53e-12 63.9
MS.gene92953.t1 AT1G69540 40.789 76 44 1 9 83 2 77 1.21e-11 63.5
MS.gene92953.t1 AT1G77080 49.275 69 34 1 9 76 2 70 1.53e-11 61.6
MS.gene92953.t1 AT2G26320 35.106 94 52 2 5 96 14 100 2.23e-11 59.3
MS.gene92953.t1 AT1G46408 44.737 76 38 2 7 78 2 77 2.92e-11 62.0
MS.gene92953.t1 AT1G77080 49.275 69 34 1 9 76 2 70 4.33e-11 60.8

Find 50 sgRNAs with CRISPR-Local

Find 60 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTGAATTATTCAAAA+AGG 0.264625 1.2:+80655461 MS.gene92953:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.317499 1.2:+80655426 MS.gene92953:CDS
ATTTCAGATTGTTGAGCATT+TGG 0.323276 1.2:-80655588 None:intergenic
TCACCATGGCTTCAATAATA+TGG 0.324358 1.2:+80655683 MS.gene92953:CDS
GCTTTGAGAAAGTCACTTGC+AGG 0.373101 1.2:-80655092 None:intergenic
CTCATCGCCAATCTTCTTCT+CGG 0.389656 1.2:-80655367 None:intergenic
AGGAAACGGAGGCTAGGTTT+TGG 0.396742 1.2:+80655406 MS.gene92953:CDS
GTCTATGACCGTATCAAGAT+TGG 0.398383 1.2:-80655223 None:intergenic
CCTCCGTTTCCTTGAGCAAA+TGG 0.401409 1.2:-80655395 None:intergenic
TCCGGTTGATGGGATGAATA+GGG 0.429925 1.2:+80655437 MS.gene92953:CDS
GTCCGGTTGATGGGATGAAT+AGG 0.433236 1.2:+80655436 MS.gene92953:CDS
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 1.2:+80655427 MS.gene92953:CDS
TCTATGACCGTATCAAGATT+GGG 0.446553 1.2:-80655222 None:intergenic
AGTGAACTTTGCACCCTTTG+TGG 0.452717 1.2:+80655141 MS.gene92953:CDS
GCCTTTCTTTCCGCTTGACA+TGG 0.456342 1.2:-80655022 None:intergenic
CATAGACCGCTATCTTTCTC+TGG 0.460785 1.2:+80655239 MS.gene92953:CDS
CTGGATGCCGAGAAGAAGAT+TGG 0.460994 1.2:+80655360 MS.gene92953:CDS
GAGCCATTTGCTCAAGGAAA+CGG 0.461887 1.2:+80655392 MS.gene92953:CDS
TGAGGCTGCAATTGCAACAT+AGG 0.469408 1.2:-80655636 None:intergenic
GTTGAGCATTTGGCTGATGA+TGG 0.477675 1.2:-80655578 None:intergenic
TTGCAGCCTCATTTATCTGA+TGG 0.480486 1.2:+80655648 MS.gene92953:CDS
TCCCTATTCATCCCATCAAC+CGG 0.481029 1.2:-80655438 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.490134 1.2:-80655154 None:intergenic
GAAGCATTGCCAACAAAAGA+TGG 0.491422 1.2:-80655537 None:intergenic
ACAAAGGGTGCAAAGTTCAC+TGG 0.510700 1.2:-80655139 None:intergenic
GCCATGTCAAGCGGAAAGAA+AGG 0.525443 1.2:+80655021 None:intergenic
ACACCATATTATTGAAGCCA+TGG 0.549763 1.2:-80655686 None:intergenic
TGGTCACCCCAATCTTGATA+CGG 0.553864 1.2:+80655215 MS.gene92953:CDS
TGAGTTGAGCCATTTGCTCA+AGG 0.563408 1.2:+80655386 MS.gene92953:CDS
TGGCATTGCAGTGAGCCTCA+TGG 0.565732 1.2:-80655293 None:intergenic
CTCATTGTATTCTCACCTAG+TGG 0.573768 1.2:+80655177 MS.gene92953:CDS
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1.2:-80655211 None:intergenic
TGCTCAAGGAAACGGAGGCT+AGG 0.582635 1.2:+80655400 MS.gene92953:CDS
ATTGATCCATCAGATAAATG+AGG 0.593185 1.2:-80655654 None:intergenic
AGAATTGAGTTCACGAACGT+TGG 0.593330 1.2:-80655313 None:intergenic
TGTATTCTCACCTAGTGGAA+AGG 0.611194 1.2:+80655182 MS.gene92953:CDS
ATGATGGAGATAAATGTTCG+AGG 0.611297 1.2:-80655562 None:intergenic
TCAAGCGGAAAGAAAGGCCG+AGG 0.614100 1.2:+80655027 MS.gene92953:CDS
AAGGAAAATACCTTTCCACT+AGG 0.624124 1.2:-80655192 None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG 0.625617 1.2:+80655102 MS.gene92953:CDS
TGTGCGTCAGCCATGTCAAG+CGG 0.628268 1.2:+80655012 None:intergenic
GTGAGCCTCATGGAGTTGCA+TGG 0.631848 1.2:-80655283 None:intergenic
GAGCAGCATCTGCACCACAA+AGG 0.637538 1.2:-80655155 None:intergenic
CTATGACCGTATCAAGATTG+GGG 0.641126 1.2:-80655221 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 1.2:-80655681 None:intergenic
GACTCAAATCAACAACACGC+TGG 0.644948 1.2:+80655341 MS.gene92953:CDS
CCATTTGCTCAAGGAAACGG+AGG 0.676667 1.2:+80655395 MS.gene92953:CDS
CGACACCATGCAACTCCATG+AGG 0.697844 1.2:+80655278 MS.gene92953:CDS
GTGGTACCAGAGAAAGATAG+CGG 0.703250 1.2:-80655245 None:intergenic
GGATCAATGATGCCTCACCA+TGG 0.734402 1.2:+80655669 MS.gene92953:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTTGAATTATTCAAAA+AGG + chr1.2:80655461-80655480 MS.gene92953:CDS 20.0%
!!! ATAGGATTTTGAAAAAAATG+TGG - chr1.2:80655621-80655640 None:intergenic 20.0%
!! TGAATTATTCAAAAAGGCAT+TGG + chr1.2:80655467-80655486 MS.gene92953:CDS 25.0%
ATTGATCCATCAGATAAATG+AGG - chr1.2:80655657-80655676 None:intergenic 30.0%
ATTTCAGATTGTTGAGCATT+TGG - chr1.2:80655591-80655610 None:intergenic 30.0%
!! ATTATTCAAAAAGGCATTGG+AGG + chr1.2:80655470-80655489 MS.gene92953:CDS 30.0%
!! GGATTTTGAAAAAAATGTGG+TGG - chr1.2:80655618-80655637 None:intergenic 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG - chr1.2:80655056-80655075 None:intergenic 30.0%
AAGGAAAATACCTTTCCACT+AGG - chr1.2:80655195-80655214 None:intergenic 35.0%
ACACCATATTATTGAAGCCA+TGG - chr1.2:80655689-80655708 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG - chr1.2:80655684-80655703 None:intergenic 35.0%
TCACCATGGCTTCAATAATA+TGG + chr1.2:80655683-80655702 MS.gene92953:CDS 35.0%
TCTATGACCGTATCAAGATT+GGG - chr1.2:80655225-80655244 None:intergenic 35.0%
! ATGATGGAGATAAATGTTCG+AGG - chr1.2:80655565-80655584 None:intergenic 35.0%
!!! AGTGGAAAGGTATTTTCCTT+TGG + chr1.2:80655195-80655214 MS.gene92953:CDS 35.0%
AGAATTGAGTTCACGAACGT+TGG - chr1.2:80655316-80655335 None:intergenic 40.0%
CTATGACCGTATCAAGATTG+GGG - chr1.2:80655224-80655243 None:intergenic 40.0%
CTCATTGTATTCTCACCTAG+TGG + chr1.2:80655177-80655196 MS.gene92953:CDS 40.0%
GTCTATGACCGTATCAAGAT+TGG - chr1.2:80655226-80655245 None:intergenic 40.0%
TGTATTCTCACCTAGTGGAA+AGG + chr1.2:80655182-80655201 MS.gene92953:CDS 40.0%
TTGCAGCCTCATTTATCTGA+TGG + chr1.2:80655648-80655667 MS.gene92953:CDS 40.0%
! CGAACTCTTCCATCTTTTGT+TGG + chr1.2:80655528-80655547 MS.gene92953:CDS 40.0%
!! GAAGCATTGCCAACAAAAGA+TGG - chr1.2:80655540-80655559 None:intergenic 40.0%
AGTGAACTTTGCACCCTTTG+TGG + chr1.2:80655141-80655160 MS.gene92953:CDS 45.0%
ATCAAGATTGGGGTGACCAA+AGG - chr1.2:80655214-80655233 None:intergenic 45.0%
CATAGACCGCTATCTTTCTC+TGG + chr1.2:80655239-80655258 MS.gene92953:CDS 45.0%
CTCATCGCCAATCTTCTTCT+CGG - chr1.2:80655370-80655389 None:intergenic 45.0%
GACTCAAATCAACAACACGC+TGG + chr1.2:80655341-80655360 MS.gene92953:CDS 45.0%
GAGCCATTTGCTCAAGGAAA+CGG + chr1.2:80655392-80655411 MS.gene92953:CDS 45.0%
GTGGTACCAGAGAAAGATAG+CGG - chr1.2:80655248-80655267 None:intergenic 45.0%
GTTGAGCATTTGGCTGATGA+TGG - chr1.2:80655581-80655600 None:intergenic 45.0%
TCCCTATTCATCCCATCAAC+CGG - chr1.2:80655441-80655460 None:intergenic 45.0%
TGAGGCTGCAATTGCAACAT+AGG - chr1.2:80655639-80655658 None:intergenic 45.0%
TGGTCACCCCAATCTTGATA+CGG + chr1.2:80655215-80655234 MS.gene92953:CDS 45.0%
! ACAAAGGGTGCAAAGTTCAC+TGG - chr1.2:80655142-80655161 None:intergenic 45.0%
! TGAGTTGAGCCATTTGCTCA+AGG + chr1.2:80655386-80655405 MS.gene92953:CDS 45.0%
!! ACTTTCTCAAAGCGTCGTAG+CGG + chr1.2:80655102-80655121 MS.gene92953:CDS 45.0%
!! GCTTTGAGAAAGTCACTTGC+AGG - chr1.2:80655095-80655114 None:intergenic 45.0%
!! TCCGGTTGATGGGATGAATA+GGG + chr1.2:80655437-80655456 MS.gene92953:CDS 45.0%
!!! ATGGTGTCGTTGTTTTGTGG+TGG - chr1.2:80655267-80655286 None:intergenic 45.0%
!!! TGCATGGTGTCGTTGTTTTG+TGG - chr1.2:80655270-80655289 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG - chr1.2:80655157-80655176 None:intergenic 50.0%
CCATTTGCTCAAGGAAACGG+AGG + chr1.2:80655395-80655414 MS.gene92953:CDS 50.0%
CCTCCGTTTCCTTGAGCAAA+TGG - chr1.2:80655398-80655417 None:intergenic 50.0%
CTGGATGCCGAGAAGAAGAT+TGG + chr1.2:80655360-80655379 MS.gene92953:CDS 50.0%
GGATCAATGATGCCTCACCA+TGG + chr1.2:80655669-80655688 MS.gene92953:CDS 50.0%
! AGGAAACGGAGGCTAGGTTT+TGG + chr1.2:80655406-80655425 MS.gene92953:CDS 50.0%
! TCTCGATCTTTTGGCGACCT+CGG - chr1.2:80655047-80655066 None:intergenic 50.0%
!! AAACGGAGGCTAGGTTTTGG+TGG + chr1.2:80655409-80655428 MS.gene92953:CDS 50.0%
!! AACGGAGGCTAGGTTTTGGT+GGG + chr1.2:80655410-80655429 MS.gene92953:CDS 50.0%
!! GTCCGGTTGATGGGATGAAT+AGG + chr1.2:80655436-80655455 MS.gene92953:CDS 50.0%
!!! TAGGTTTTGGTGGGCTTGTC+CGG + chr1.2:80655419-80655438 MS.gene92953:CDS 50.0%
CGACACCATGCAACTCCATG+AGG + chr1.2:80655278-80655297 MS.gene92953:CDS 55.0%
GAGCAGCATCTGCACCACAA+AGG - chr1.2:80655158-80655177 None:intergenic 55.0%
GTGAGCCTCATGGAGTTGCA+TGG - chr1.2:80655286-80655305 None:intergenic 55.0%
TCAAGCGGAAAGAAAGGCCG+AGG + chr1.2:80655027-80655046 MS.gene92953:CDS 55.0%
TGCTCAAGGAAACGGAGGCT+AGG + chr1.2:80655400-80655419 MS.gene92953:CDS 55.0%
TGGCATTGCAGTGAGCCTCA+TGG - chr1.2:80655296-80655315 None:intergenic 55.0%
! GGTGGGCTTGTCCGGTTGAT+GGG + chr1.2:80655427-80655446 MS.gene92953:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + chr1.2:80655426-80655445 MS.gene92953:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 80655024 80655710 80655024 ID=MS.gene92953
chr1.2 mRNA 80655024 80655710 80655024 ID=MS.gene92953.t1;Parent=MS.gene92953
chr1.2 exon 80655024 80655710 80655024 ID=MS.gene92953.t1.exon1;Parent=MS.gene92953.t1
chr1.2 CDS 80655024 80655710 80655024 ID=cds.MS.gene92953.t1;Parent=MS.gene92953.t1
Gene Sequence

>MS.gene92953

ATGTCAAGCGGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCCAGTGAACTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCATTGTATTCTCACCTAGTGGAAAGGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAGACCGCTATCTTTCTCTGGTACCACCACAAAACAACGACACCATGCAACTCCATGAGGCTCACTGCAATGCCAACGTTCGTGAACTCAATTCTCAGATGACTCAAATCAACAACACGCTGGATGCCGAGAAGAAGATTGGCGATGAGTTGAGCCATTTGCTCAAGGAAACGGAGGCTAGGTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAAAAGGCATTGGAGGAGCTTAAGAAACTTCTAATTCAGCATGCTACAACTCGAACTCTTCCATCTTTTGTTGGCAATGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATGCTCAACAATCTGAAATGTTGCCACCACATTTTTTTCAAAATCCTATGTTGCAATTGCAGCCTCATTTATCTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene92953.t1

MSSGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALIVFSPSGKVFSFGHPNLDTVIDRYLSLVPPQNNDTMQLHEAHCNANVRELNSQMTQINNTLDAEKKIGDELSHLLKETEARFWWACPVDGMNRDQLELFKKALEELKKLLIQHATTRTLPSFVGNASSSNIYLHHQPNAQQSEMLPPHFFQNPMLQLQPHLSDGSMMPHHGFNNMV