AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92957

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92957.t1 MTR_1g108510 94.737 228 12 0 1 228 1 228 6.74e-165 454
MS.gene92957.t1 MTR_3g030770 94.298 228 13 0 1 228 1 228 2.60e-163 450
MS.gene92957.t1 MTR_2g093190 87.281 228 29 0 1 228 1 228 1.27e-149 416
MS.gene92957.t1 MTR_1g108580 83.772 228 37 0 1 228 1 228 3.08e-144 402
MS.gene92957.t1 MTR_1g105920 76.471 221 42 2 1 213 1 219 3.27e-116 331
MS.gene92957.t1 MTR_8g043650 71.861 231 55 2 1 223 1 229 8.87e-113 323
MS.gene92957.t1 MTR_2g030740 72.851 221 50 2 1 213 1 219 4.83e-111 318
MS.gene92957.t1 MTR_1g105910 69.362 235 54 3 1 227 1 225 7.98e-111 318
MS.gene92957.t1 MTR_3g052920 70.588 221 55 2 1 213 1 219 3.10e-108 311
MS.gene92957.t1 MTR_1g012570 71.041 221 54 2 1 213 1 219 7.08e-108 310
MS.gene92957.t1 MTR_0121s0080 65.532 235 63 3 1 227 1 225 1.13e-102 297
MS.gene92957.t1 MTR_1g075600 64.255 235 66 3 1 227 1 225 7.69e-100 290
MS.gene92957.t1 MTR_1g077360 62.553 235 70 3 1 227 1 225 7.32e-99 287
MS.gene92957.t1 MTR_3g052870 67.421 221 43 4 1 213 1 200 1.09e-94 276
MS.gene92957.t1 MTR_5g045560 61.277 235 73 3 1 227 1 225 2.09e-94 276
MS.gene92957.t1 MTR_1g105905 65.138 218 58 3 18 227 1 208 9.50e-94 274
MS.gene92957.t1 MTR_5g053390 61.702 235 72 3 1 227 1 225 1.15e-93 274
MS.gene92957.t1 MTR_1g106070 73.626 182 40 1 1 174 1 182 2.32e-92 269
MS.gene92957.t1 MTR_5g055100 59.149 235 78 3 1 227 1 225 4.56e-90 265
MS.gene92957.t1 MTR_2g085280 59.149 235 78 3 1 227 1 225 6.76e-90 265
MS.gene92957.t1 MTR_2g085250 59.912 227 81 2 1 219 1 225 8.69e-90 264
MS.gene92957.t1 MTR_7g062350 61.538 221 66 4 16 227 27 237 1.12e-83 249
MS.gene92957.t1 MTR_0121s0100 84.848 132 20 0 1 132 1 132 4.15e-77 228
MS.gene92957.t1 MTR_3g030780 70.455 132 39 0 1 132 1 132 7.23e-63 192
MS.gene92957.t1 MTR_3g080940 54.857 175 77 1 9 183 9 181 5.19e-62 192
MS.gene92957.t1 MTR_1g075570 57.303 178 54 2 18 187 1 164 1.54e-52 167
MS.gene92957.t1 MTR_3g067910 64.706 102 36 0 21 122 2 103 1.36e-41 137
MS.gene92957.t1 MTR_8g086290 44.242 165 82 2 5 166 8 165 3.75e-41 139
MS.gene92957.t1 MTR_2g105290 40.606 165 88 2 5 166 8 165 3.39e-37 128
MS.gene92957.t1 MTR_1g108500 55.000 120 31 2 8 125 94 192 1.43e-31 118
MS.gene92957.t1 MTR_7g028448 42.262 168 83 4 5 171 8 162 2.04e-31 113
MS.gene92957.t1 MTR_4g036915 42.262 168 83 4 5 171 8 162 2.04e-31 113
MS.gene92957.t1 MTR_4g127140 38.857 175 87 4 5 166 8 175 3.34e-27 103
MS.gene92957.t1 MTR_3g067875 80.357 56 11 0 18 73 1 56 4.87e-26 96.7
MS.gene92957.t1 MTR_3g067915 51.064 94 46 0 33 126 3 96 1.29e-24 93.6
MS.gene92957.t1 MTR_1g063160 46.429 112 55 3 9 118 2 110 4.02e-24 95.1
MS.gene92957.t1 MTR_8g079502 57.971 69 29 0 9 77 2 70 3.22e-23 92.8
MS.gene92957.t1 MTR_1g054265 53.247 77 36 0 9 85 2 78 3.52e-23 92.0
MS.gene92957.t1 MTR_1g047550 57.971 69 29 0 9 77 2 70 4.84e-23 92.0
MS.gene92957.t1 MTR_4g131030 37.500 136 70 3 9 129 2 137 5.37e-23 92.8
MS.gene92957.t1 MTR_4g094632 41.509 106 60 1 9 114 2 105 6.10e-22 88.6
MS.gene92957.t1 MTR_8g051580 56.522 69 30 0 9 77 2 70 1.16e-21 88.6
MS.gene92957.t1 MTR_3g067870 67.213 61 20 0 16 76 83 143 1.61e-21 87.4
MS.gene92957.t1 MTR_8g046350 38.017 121 70 1 9 129 2 117 5.25e-21 86.3
MS.gene92957.t1 MTR_4g094638 42.453 106 60 1 9 113 2 107 1.09e-20 85.9
MS.gene92957.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.79e-19 84.0
MS.gene92957.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 2.31e-19 83.6
MS.gene92957.t1 MTR_3g102570 45.098 102 53 3 9 109 2 101 4.81e-19 84.3
MS.gene92957.t1 MTR_4g102530 53.731 67 31 0 10 76 3 69 4.95e-19 82.0
MS.gene92957.t1 MTR_1g053070 48.148 81 42 0 9 89 2 82 6.17e-19 82.8
MS.gene92957.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 6.82e-19 82.4
MS.gene92957.t1 MTR_5g032150 32.258 155 74 5 9 156 2 132 1.53e-18 81.3
MS.gene92957.t1 MTR_8g033270 48.101 79 39 1 9 85 2 80 1.82e-18 81.6
MS.gene92957.t1 MTR_5g032520 32.903 155 73 5 9 156 2 132 2.11e-18 80.9
MS.gene92957.t1 MTR_3g452380 45.122 82 45 0 5 86 13 94 3.33e-18 80.9
MS.gene92957.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 4.45e-18 80.5
MS.gene92957.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 5.40e-18 79.0
MS.gene92957.t1 MTR_8g033220 29.464 224 126 8 10 216 3 211 5.87e-18 79.7
MS.gene92957.t1 MTR_8g033220 29.464 224 126 8 10 216 3 211 6.10e-18 79.7
MS.gene92957.t1 MTR_4g109830 49.296 71 33 2 7 76 2 70 9.84e-18 79.3
MS.gene92957.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 1.59e-17 79.7
MS.gene92957.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 2.04e-17 78.6
MS.gene92957.t1 MTR_7g075870 50.746 67 33 0 10 76 3 69 2.04e-17 78.2
MS.gene92957.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 2.17e-17 78.6
MS.gene92957.t1 MTR_2g017865 50.000 68 34 0 9 76 17 84 2.34e-17 79.0
MS.gene92957.t1 MTR_8g022970 32.075 159 93 3 8 159 17 167 3.29e-17 77.0
MS.gene92957.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 5.29e-17 77.4
MS.gene92957.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 5.32e-17 77.0
MS.gene92957.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 2.98e-16 70.9
MS.gene92957.t1 MTR_8g066260 46.377 69 36 1 9 76 2 70 3.10e-16 75.5
MS.gene92957.t1 MTR_7g075870 50.000 68 33 1 10 76 3 70 3.59e-16 74.7
MS.gene92957.t1 MTR_7g016600 49.296 71 33 2 7 76 2 70 3.76e-16 75.5
MS.gene92957.t1 MTR_6g015975 47.826 69 35 1 9 76 2 70 4.44e-16 75.1
MS.gene92957.t1 MTR_4g084740 48.611 72 36 1 9 79 2 73 6.84e-16 75.5
MS.gene92957.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 7.38e-16 71.2
MS.gene92957.t1 MTR_1g038300 48.571 70 34 1 9 76 2 71 8.67e-16 73.9
MS.gene92957.t1 MTR_5g046790 43.478 69 38 1 9 76 2 70 1.71e-15 72.8
MS.gene92957.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 1.92e-15 73.6
MS.gene92957.t1 MTR_3g088615 45.714 70 36 1 9 76 2 71 2.03e-15 72.0
MS.gene92957.t1 MTR_1g029670 45.714 70 36 1 9 76 2 71 4.22e-15 71.2
MS.gene92957.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 6.13e-15 72.0
MS.gene92957.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 8.75e-15 71.6
MS.gene92957.t1 MTR_8g097090 53.571 56 26 0 9 64 2 57 1.09e-14 71.2
MS.gene92957.t1 MTR_7g075850 47.143 70 35 1 9 76 2 71 1.51e-14 70.9
MS.gene92957.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.88e-14 66.2
MS.gene92957.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 2.07e-14 70.1
MS.gene92957.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 2.12e-14 70.1
MS.gene92957.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 2.45e-14 70.1
MS.gene92957.t1 MTR_4g036050 28.000 225 114 9 9 209 2 202 5.61e-14 68.6
MS.gene92957.t1 MTR_4g036050 27.854 219 108 10 9 209 2 188 1.76e-13 67.0
MS.gene92957.t1 MTR_3g437790 31.034 145 79 5 26 159 30 164 1.90e-13 66.6
MS.gene92957.t1 MTR_4g108720 29.762 168 104 6 9 164 2 167 2.00e-13 68.9
MS.gene92957.t1 MTR_3g109930 32.609 138 81 3 27 159 20 150 4.33e-13 65.5
MS.gene92957.t1 MTR_4g036050 30.573 157 76 6 9 156 2 134 9.81e-13 64.7
MS.gene92957.t1 MTR_4g036050 30.573 157 76 6 9 156 2 134 1.28e-12 64.7
MS.gene92957.t1 MTR_1g041615 41.558 77 44 1 20 95 17 93 1.52e-12 63.2
MS.gene92957.t1 MTR_4g051538 29.878 164 98 3 5 166 5 153 1.97e-12 64.7
MS.gene92957.t1 MTR_4g093030 36.364 110 40 3 9 88 2 111 3.51e-12 62.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92957.t1 AT5G60440 54.348 184 78 3 5 182 3 186 6.50e-58 185
MS.gene92957.t1 AT2G24840 43.939 198 84 7 9 184 63 255 2.99e-41 141
MS.gene92957.t1 AT4G36590 42.632 190 89 6 5 179 3 187 5.02e-39 135
MS.gene92957.t1 AT1G65360 41.209 182 100 4 5 181 3 182 1.62e-37 130
MS.gene92957.t1 AT1G01530 42.391 184 98 4 4 183 2 181 1.19e-36 129
MS.gene92957.t1 AT2G34440 37.838 148 90 2 9 156 2 147 1.21e-27 103
MS.gene92957.t1 AT3G04100 30.526 190 120 3 2 183 7 192 2.22e-24 96.3
MS.gene92957.t1 AT3G66656 39.535 129 74 1 9 133 2 130 1.83e-23 93.2
MS.gene92957.t1 AT1G72350 33.526 173 75 5 9 174 43 182 5.30e-22 90.5
MS.gene92957.t1 AT1G28460 29.412 170 117 2 3 169 2 171 5.13e-21 87.0
MS.gene92957.t1 AT4G09960 39.231 130 69 4 9 131 2 128 4.18e-20 85.5
MS.gene92957.t1 AT4G09960 46.512 86 45 1 9 93 2 87 5.25e-20 85.5
MS.gene92957.t1 AT4G09960 46.512 86 45 1 9 93 3 88 5.29e-20 85.5
MS.gene92957.t1 AT4G09960 39.231 130 69 4 9 131 12 138 7.20e-20 85.1
MS.gene92957.t1 AT4G09960 38.235 136 74 4 9 137 28 160 9.56e-20 85.1
MS.gene92957.t1 AT4G24540 35.811 148 78 4 9 156 2 132 9.76e-20 84.3
MS.gene92957.t1 AT2G45660 51.471 68 33 0 10 77 3 70 1.35e-19 82.4
MS.gene92957.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.61e-19 84.7
MS.gene92957.t1 AT1G29962 29.651 172 113 4 5 169 4 174 2.25e-19 82.8
MS.gene92957.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.83e-19 85.1
MS.gene92957.t1 AT2G45660 51.471 68 33 0 10 77 3 70 5.69e-19 82.4
MS.gene92957.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.09e-18 82.0
MS.gene92957.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.09e-18 82.0
MS.gene92957.t1 AT5G13790 43.878 98 46 1 9 106 2 90 1.21e-18 82.4
MS.gene92957.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.50e-18 80.1
MS.gene92957.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.62e-18 79.3
MS.gene92957.t1 AT4G18960 41.346 104 49 2 5 108 16 107 1.91e-18 81.6
MS.gene92957.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.21e-18 80.5
MS.gene92957.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.26e-18 80.9
MS.gene92957.t1 AT5G13790 52.941 68 32 0 9 76 2 69 2.38e-18 81.6
MS.gene92957.t1 AT5G51870 51.389 72 35 0 5 76 21 92 3.12e-18 79.7
MS.gene92957.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.20e-18 80.1
MS.gene92957.t1 AT5G51870 53.731 67 31 0 10 76 13 79 4.97e-18 80.1
MS.gene92957.t1 AT4G22950 52.239 67 32 0 10 76 3 69 5.05e-18 79.0
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.08e-18 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.08e-18 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.08e-18 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.59e-18 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.59e-18 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.59e-18 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.59e-18 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 5.59e-18 78.2
MS.gene92957.t1 AT5G10140 52.174 69 32 1 9 76 2 70 5.63e-18 78.6
MS.gene92957.t1 AT3G57390 50.000 68 34 0 9 76 2 69 5.66e-18 80.5
MS.gene92957.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.63e-18 80.1
MS.gene92957.t1 AT3G57230 47.059 68 36 0 9 76 2 69 6.63e-18 80.1
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.82e-18 76.6
MS.gene92957.t1 AT4G37940 47.059 68 36 0 9 76 2 69 8.60e-18 79.3
MS.gene92957.t1 AT5G10140 52.174 69 32 1 9 76 2 70 9.03e-18 78.2
MS.gene92957.t1 AT4G37940 47.059 68 36 0 9 76 2 69 9.81e-18 79.0
MS.gene92957.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.08e-17 78.6
MS.gene92957.t1 AT5G10140 52.174 69 32 1 9 76 2 70 1.15e-17 78.2
MS.gene92957.t1 AT2G42830 50.000 68 34 0 9 76 17 84 1.38e-17 79.3
MS.gene92957.t1 AT2G42830 50.000 68 34 0 9 76 17 84 1.52e-17 79.0
MS.gene92957.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.56e-17 77.4
MS.gene92957.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.89e-17 78.2
MS.gene92957.t1 AT4G22950 52.239 67 32 0 10 76 3 69 1.89e-17 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.90e-17 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.90e-17 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.90e-17 78.2
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.96e-17 77.8
MS.gene92957.t1 AT5G62165 50.746 67 33 0 10 76 3 69 1.96e-17 77.8
MS.gene92957.t1 AT5G51860 52.239 67 32 0 10 76 3 69 2.09e-17 77.8
MS.gene92957.t1 AT3G58780 50.000 68 34 0 9 76 17 84 2.29e-17 78.6
MS.gene92957.t1 AT3G58780 50.000 68 34 0 9 76 23 90 2.56e-17 78.6
MS.gene92957.t1 AT5G51860 52.239 67 32 0 10 76 3 69 2.77e-17 77.8
MS.gene92957.t1 AT3G58780 49.333 75 36 1 2 76 12 84 4.12e-17 78.6
MS.gene92957.t1 AT1G26310 49.296 71 33 2 7 76 2 70 8.54e-17 77.4
MS.gene92957.t1 AT1G77980 51.389 72 34 1 9 79 2 73 9.82e-17 78.2
MS.gene92957.t1 AT3G61120 48.529 68 35 0 9 76 2 69 1.16e-16 76.6
MS.gene92957.t1 AT1G69120 49.296 71 33 2 7 76 2 70 1.31e-16 76.3
MS.gene92957.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.42e-16 76.6
MS.gene92957.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.42e-16 76.6
MS.gene92957.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.42e-16 76.6
MS.gene92957.t1 AT1G77950 48.611 72 36 1 9 79 2 73 1.42e-16 76.6
MS.gene92957.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.61e-16 76.3
MS.gene92957.t1 AT1G22130 39.785 93 55 1 9 100 2 94 1.63e-16 77.4
MS.gene92957.t1 AT5G60910 47.826 69 35 1 9 76 2 70 2.07e-16 75.9
MS.gene92957.t1 AT3G30260 44.928 69 37 1 9 76 2 70 2.16e-16 75.9
MS.gene92957.t1 AT2G14210 46.377 69 36 1 9 76 2 70 2.22e-16 75.9
MS.gene92957.t1 AT2G22540 57.143 56 24 0 9 64 2 57 2.53e-16 75.5
MS.gene92957.t1 AT4G11880 50.000 68 33 1 10 76 3 70 3.28e-16 73.9
MS.gene92957.t1 AT4G11880 50.000 68 33 1 10 76 3 70 3.28e-16 73.9
MS.gene92957.t1 AT1G28450 28.161 174 117 4 3 169 2 174 3.62e-16 73.9
MS.gene92957.t1 AT1G69120 49.296 71 33 2 7 76 2 70 3.84e-16 75.5
MS.gene92957.t1 AT5G65050 47.826 69 35 1 9 76 2 70 5.73e-16 73.6
MS.gene92957.t1 AT4G11880 50.000 68 33 1 10 76 3 70 6.28e-16 74.3
MS.gene92957.t1 AT4G11880 50.000 68 33 1 10 76 3 70 6.28e-16 74.3
MS.gene92957.t1 AT5G15800 47.826 69 35 1 9 76 2 70 8.82e-16 74.3
MS.gene92957.t1 AT5G20240 50.000 62 31 0 9 70 2 63 9.07e-16 72.0
MS.gene92957.t1 AT5G65060 47.826 69 35 1 9 76 2 70 1.28e-15 72.8
MS.gene92957.t1 AT5G20240 45.205 73 38 1 9 79 2 74 1.29e-15 73.2
MS.gene92957.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.57e-15 73.9
MS.gene92957.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.69e-15 72.4
MS.gene92957.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.80e-15 72.0
MS.gene92957.t1 AT3G58780 50.000 68 27 1 9 76 17 77 1.83e-15 73.2
MS.gene92957.t1 AT5G65050 47.826 69 35 1 9 76 2 70 1.83e-15 72.4
MS.gene92957.t1 AT5G65060 47.826 69 35 1 9 76 2 70 1.93e-15 72.0
MS.gene92957.t1 AT5G65060 47.826 69 35 1 9 76 2 70 2.14e-15 72.4
MS.gene92957.t1 AT3G02310 47.826 69 35 1 9 76 2 70 2.25e-15 72.4
MS.gene92957.t1 AT5G23260 49.333 75 36 1 5 77 14 88 2.53e-15 73.6
MS.gene92957.t1 AT2G03710 55.357 56 25 0 9 64 2 57 2.54e-15 72.0
MS.gene92957.t1 AT5G23260 49.333 75 36 1 5 77 14 88 2.74e-15 73.2
MS.gene92957.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.86e-15 70.9
MS.gene92957.t1 AT3G58780 53.448 58 27 0 9 66 17 74 2.87e-15 73.2
MS.gene92957.t1 AT5G23260 50.704 71 33 1 9 77 2 72 4.92e-15 72.4
MS.gene92957.t1 AT5G23260 50.704 71 33 1 9 77 2 72 5.08e-15 72.0
MS.gene92957.t1 AT5G65070 42.029 69 39 1 9 76 2 70 5.66e-15 71.2
MS.gene92957.t1 AT3G54340 43.836 73 39 1 9 79 2 74 6.37e-15 71.6
MS.gene92957.t1 AT2G22630 44.118 68 38 0 9 76 2 69 6.42e-15 71.6
MS.gene92957.t1 AT2G22630 44.118 68 38 0 9 76 2 69 6.42e-15 71.6
MS.gene92957.t1 AT3G02310 47.826 69 35 1 9 76 2 70 6.81e-15 72.0
MS.gene92957.t1 AT1G24260 53.571 56 26 0 9 64 2 57 7.84e-15 71.6
MS.gene92957.t1 AT1G24260 53.571 56 26 0 9 64 2 57 7.89e-15 71.6
MS.gene92957.t1 AT1G24260 53.571 56 26 0 9 64 2 57 7.94e-15 71.6
MS.gene92957.t1 AT2G03710 55.357 56 25 0 9 64 2 57 1.17e-14 71.2
MS.gene92957.t1 AT2G03710 55.357 56 25 0 9 64 2 57 1.23e-14 71.2
MS.gene92957.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.34e-14 70.9
MS.gene92957.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.66e-14 70.1
MS.gene92957.t1 AT1G17310 50.633 79 37 1 8 86 47 123 2.76e-14 69.7
MS.gene92957.t1 AT1G17310 50.633 79 37 1 8 86 58 134 3.71e-14 69.7
MS.gene92957.t1 AT1G71692 44.928 69 37 1 10 77 3 71 4.30e-14 68.9
MS.gene92957.t1 AT1G18750 41.333 75 42 1 9 81 2 76 5.88e-14 70.5
MS.gene92957.t1 AT1G18750 41.333 75 42 1 9 81 2 76 6.11e-14 70.5
MS.gene92957.t1 AT1G18750 41.333 75 42 1 9 81 2 76 6.63e-14 70.5
MS.gene92957.t1 AT1G47760 41.791 67 39 0 9 75 2 68 9.72e-14 67.4
MS.gene92957.t1 AT5G65070 47.368 57 30 0 9 65 2 58 1.64e-13 67.8
MS.gene92957.t1 AT5G65080 38.961 77 46 1 1 76 1 77 2.31e-13 66.6
MS.gene92957.t1 AT5G65080 43.548 62 35 0 1 62 1 62 1.76e-12 64.7
MS.gene92957.t1 AT4G37435 40.845 71 41 1 9 78 2 72 2.08e-12 63.9
MS.gene92957.t1 AT5G49420 37.234 94 52 2 5 91 3 96 4.15e-12 65.1
MS.gene92957.t1 AT5G49490 38.636 88 47 2 5 85 41 128 8.90e-12 63.5
MS.gene92957.t1 AT1G69540 41.892 74 42 1 9 81 2 75 9.56e-12 63.9
MS.gene92957.t1 AT1G69540 40.789 76 44 1 9 83 2 77 1.28e-11 63.5
MS.gene92957.t1 AT1G77080 49.275 69 34 1 9 76 2 70 2.21e-11 60.8
MS.gene92957.t1 AT1G77080 49.275 69 34 1 9 76 2 70 2.41e-11 60.8
MS.gene92957.t1 AT2G03060 28.824 170 96 8 9 159 2 165 2.82e-11 62.8
MS.gene92957.t1 AT2G03060 28.824 170 96 8 9 159 2 165 2.82e-11 62.8
MS.gene92957.t1 AT2G03060 28.824 170 96 8 9 159 2 165 2.82e-11 62.8
MS.gene92957.t1 AT2G03060 28.824 170 96 8 9 159 2 165 2.88e-11 62.8
MS.gene92957.t1 AT1G77080 49.275 69 34 1 9 76 2 70 5.68e-11 60.1
MS.gene92957.t1 AT1G46408 43.421 76 39 2 7 78 2 77 5.82e-11 61.2

Find 47 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAACTTGAATTATTCAAAA+AGG 0.264625 1.2:+80643250 MS.gene92957:CDS
TTGCAGCCTCATTTGTTTGA+TGG 0.293834 1.2:+80643437 MS.gene92957:CDS
ATTTCAGATTGTTGAGCATT+TGG 0.323276 1.2:-80643377 None:intergenic
TCACCATGGCTTCAATAATA+TGG 0.324358 1.2:+80643472 MS.gene92957:CDS
TGGTGGGCTTGTCCGGTTGA+TGG 0.330339 1.2:+80643215 MS.gene92957:CDS
GCTTTGAGAAAGTCACTTGC+AGG 0.373101 1.2:-80642881 None:intergenic
CTCATCTCCAATCTTCTTCT+CGG 0.375310 1.2:-80643156 None:intergenic
CCTCTATTTCCTTGAGCAAA+TGG 0.378302 1.2:-80643184 None:intergenic
GTTTATGACCGTATCAAGAT+TGG 0.396706 1.2:-80643012 None:intergenic
AGTGAGCTTTGCACCCTTTG+TGG 0.424656 1.2:+80642930 MS.gene92957:CDS
TTTATGACCGTATCAAGATT+GGG 0.425077 1.2:-80643011 None:intergenic
TCCGGTTGATGGGATGAATA+GGG 0.429925 1.2:+80643226 MS.gene92957:CDS
GTCCGGTTGATGGGATGAAT+AGG 0.433236 1.2:+80643225 MS.gene92957:CDS
CTGGATGCCGAGAAGAAGAT+TGG 0.434251 1.2:+80643149 MS.gene92957:CDS
GGTGGGCTTGTCCGGTTGAT+GGG 0.441656 1.2:+80643216 MS.gene92957:CDS
CATAAACCGCTATCTTTCTC+TGG 0.451348 1.2:+80643028 MS.gene92957:CDS
GCCTTTCTTTCCGTTTGACA+TGG 0.453591 1.2:-80642811 None:intergenic
GTTGAGCATTTGGCTGATGA+TGG 0.477675 1.2:-80643367 None:intergenic
TCCCTATTCATCCCATCAAC+CGG 0.481029 1.2:-80643227 None:intergenic
TGAGGCTGCAATTGCAACAT+AGG 0.486801 1.2:-80643425 None:intergenic
GAAGCATTGCCAACAAAAGA+TGG 0.491422 1.2:-80643326 None:intergenic
AGCAGCATCTGCACCACAAA+GGG 0.492573 1.2:-80642943 None:intergenic
CCATTTGCTCAAGGAAATAG+AGG 0.500279 1.2:+80643184 MS.gene92957:CDS
GCCATGTCAAACGGAAAGAA+AGG 0.514600 1.2:+80642810 None:intergenic
CGTTCGTGAACTCAATGCTC+AGG 0.531862 1.2:+80643106 MS.gene92957:CDS
ACACCATATTATTGAAGCCA+TGG 0.549763 1.2:-80643475 None:intergenic
TGTGCGTCAGCCATGTCAAA+CGG 0.552508 1.2:+80642801 None:intergenic
TGGTCACCCCAATCTTGATA+CGG 0.553864 1.2:+80643004 MS.gene92957:CDS
ATTGATCCATCAAACAAATG+AGG 0.563188 1.2:-80643443 None:intergenic
CGGTACCATGCAACTCATTG+AGG 0.575120 1.2:+80643067 MS.gene92957:CDS
CTCGTTGTATTCTCACCTAG+TGG 0.580084 1.2:+80642966 MS.gene92957:CDS
ATCAAGATTGGGGTGACCAA+AGG 0.581678 1.2:-80643000 None:intergenic
TCAAACGGAAAGAAAGGCCG+AGG 0.594649 1.2:+80642816 MS.gene92957:CDS
ATTTCCTTGAGCAAATGGCT+CGG 0.606474 1.2:-80643179 None:intergenic
ATGATGGAGATAAATGTTCG+AGG 0.611297 1.2:-80643351 None:intergenic
TGAGCCGAGCCATTTGCTCA+AGG 0.615211 1.2:+80643175 MS.gene92957:CDS
AGCATTGAGTTCACGAACGT+TGG 0.615294 1.2:-80643102 None:intergenic
TTATGACCGTATCAAGATTG+GGG 0.616290 1.2:-80643010 None:intergenic
ACTTTCTCAAAGCGTCGTAG+CGG 0.625617 1.2:+80642891 MS.gene92957:CDS
TACTCAAATCAACAGCACGC+TGG 0.626519 1.2:+80643130 MS.gene92957:CDS
GAGCAGCATCTGCACCACAA+AGG 0.629318 1.2:-80642944 None:intergenic
GTTCACGAACGTTGGCATTG+CGG 0.638735 1.2:-80643094 None:intergenic
ATATTATTGAAGCCATGGTG+AGG 0.642989 1.2:-80643470 None:intergenic
GTGAGCCTCAATGAGTTGCA+TGG 0.681667 1.2:-80643072 None:intergenic
GTGGTACCAGAGAAAGATAG+CGG 0.703250 1.2:-80643034 None:intergenic
CTGGTACCACCACAAAACAA+CGG 0.726284 1.2:+80643047 MS.gene92957:CDS
GGATCAATGATGCCTCACCA+TGG 0.734402 1.2:+80643458 MS.gene92957:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TCAACTTGAATTATTCAAAA+AGG + chr1.2:80643250-80643269 MS.gene92957:CDS 20.0%
!!! ATAGGATTTTGAAAAAAATG+TGG - chr1.2:80643410-80643429 None:intergenic 20.0%
!! TGAATTATTCAAAAAGGCAT+TGG + chr1.2:80643256-80643275 MS.gene92957:CDS 25.0%
ATTGATCCATCAAACAAATG+AGG - chr1.2:80643446-80643465 None:intergenic 30.0%
ATTTCAGATTGTTGAGCATT+TGG - chr1.2:80643380-80643399 None:intergenic 30.0%
TTTATGACCGTATCAAGATT+GGG - chr1.2:80643014-80643033 None:intergenic 30.0%
! AAGGAAAATACTTTTCCACT+AGG - chr1.2:80642984-80643003 None:intergenic 30.0%
! AGGAAATAGAGGCTAATTTT+TGG + chr1.2:80643195-80643214 MS.gene92957:CDS 30.0%
!! AAATAGAGGCTAATTTTTGG+TGG + chr1.2:80643198-80643217 MS.gene92957:CDS 30.0%
!! ATTATTCAAAAAGGCATTGG+AGG + chr1.2:80643259-80643278 MS.gene92957:CDS 30.0%
!! GGATTTTGAAAAAAATGTGG+TGG - chr1.2:80643407-80643426 None:intergenic 30.0%
!! TCTTTTTCATCTCGATCTTT+TGG - chr1.2:80642845-80642864 None:intergenic 30.0%
!!! AATAGAGGCTAATTTTTGGT+GGG + chr1.2:80643199-80643218 MS.gene92957:CDS 30.0%
!!! AGTGGAAAAGTATTTTCCTT+TGG + chr1.2:80642984-80643003 MS.gene92957:CDS 30.0%
ACACCATATTATTGAAGCCA+TGG - chr1.2:80643478-80643497 None:intergenic 35.0%
ATATTATTGAAGCCATGGTG+AGG - chr1.2:80643473-80643492 None:intergenic 35.0%
GTTTATGACCGTATCAAGAT+TGG - chr1.2:80643015-80643034 None:intergenic 35.0%
TCACCATGGCTTCAATAATA+TGG + chr1.2:80643472-80643491 MS.gene92957:CDS 35.0%
TTATGACCGTATCAAGATTG+GGG - chr1.2:80643013-80643032 None:intergenic 35.0%
! ATGATGGAGATAAATGTTCG+AGG - chr1.2:80643354-80643373 None:intergenic 35.0%
ATTTCCTTGAGCAAATGGCT+CGG - chr1.2:80643182-80643201 None:intergenic 40.0%
CATAAACCGCTATCTTTCTC+TGG + chr1.2:80643028-80643047 MS.gene92957:CDS 40.0%
CCATTTGCTCAAGGAAATAG+AGG + chr1.2:80643184-80643203 MS.gene92957:CDS 40.0%
CCTCTATTTCCTTGAGCAAA+TGG - chr1.2:80643187-80643206 None:intergenic 40.0%
CTCATCTCCAATCTTCTTCT+CGG - chr1.2:80643159-80643178 None:intergenic 40.0%
TTGCAGCCTCATTTGTTTGA+TGG + chr1.2:80643437-80643456 MS.gene92957:CDS 40.0%
! CGAACTCTTCCATCTTTTGT+TGG + chr1.2:80643317-80643336 MS.gene92957:CDS 40.0%
!! GAAGCATTGCCAACAAAAGA+TGG - chr1.2:80643329-80643348 None:intergenic 40.0%
!!! TAATTTTTGGTGGGCTTGTC+CGG + chr1.2:80643208-80643227 MS.gene92957:CDS 40.0%
ATCAAGATTGGGGTGACCAA+AGG - chr1.2:80643003-80643022 None:intergenic 45.0%
CTCGTTGTATTCTCACCTAG+TGG + chr1.2:80642966-80642985 MS.gene92957:CDS 45.0%
CTGGTACCACCACAAAACAA+CGG + chr1.2:80643047-80643066 MS.gene92957:CDS 45.0%
GTGGTACCAGAGAAAGATAG+CGG - chr1.2:80643037-80643056 None:intergenic 45.0%
GTTGAGCATTTGGCTGATGA+TGG - chr1.2:80643370-80643389 None:intergenic 45.0%
TACTCAAATCAACAGCACGC+TGG + chr1.2:80643130-80643149 MS.gene92957:CDS 45.0%
TCCCTATTCATCCCATCAAC+CGG - chr1.2:80643230-80643249 None:intergenic 45.0%
TGAGGCTGCAATTGCAACAT+AGG - chr1.2:80643428-80643447 None:intergenic 45.0%
TGGTCACCCCAATCTTGATA+CGG + chr1.2:80643004-80643023 MS.gene92957:CDS 45.0%
! AGCATTGAGTTCACGAACGT+TGG - chr1.2:80643105-80643124 None:intergenic 45.0%
!! ACTTTCTCAAAGCGTCGTAG+CGG + chr1.2:80642891-80642910 MS.gene92957:CDS 45.0%
!! ATGGTACCGTTGTTTTGTGG+TGG - chr1.2:80643056-80643075 None:intergenic 45.0%
!! GCTTTGAGAAAGTCACTTGC+AGG - chr1.2:80642884-80642903 None:intergenic 45.0%
!! TCCGGTTGATGGGATGAATA+GGG + chr1.2:80643226-80643245 MS.gene92957:CDS 45.0%
!! TGCATGGTACCGTTGTTTTG+TGG - chr1.2:80643059-80643078 None:intergenic 45.0%
AGCAGCATCTGCACCACAAA+GGG - chr1.2:80642946-80642965 None:intergenic 50.0%
AGTGAGCTTTGCACCCTTTG+TGG + chr1.2:80642930-80642949 MS.gene92957:CDS 50.0%
CGGTACCATGCAACTCATTG+AGG + chr1.2:80643067-80643086 MS.gene92957:CDS 50.0%
CGTTCGTGAACTCAATGCTC+AGG + chr1.2:80643106-80643125 MS.gene92957:CDS 50.0%
CTGGATGCCGAGAAGAAGAT+TGG + chr1.2:80643149-80643168 MS.gene92957:CDS 50.0%
GGATCAATGATGCCTCACCA+TGG + chr1.2:80643458-80643477 MS.gene92957:CDS 50.0%
GTGAGCCTCAATGAGTTGCA+TGG - chr1.2:80643075-80643094 None:intergenic 50.0%
GTTCACGAACGTTGGCATTG+CGG - chr1.2:80643097-80643116 None:intergenic 50.0%
TCAAACGGAAAGAAAGGCCG+AGG + chr1.2:80642816-80642835 MS.gene92957:CDS 50.0%
! TCTCGATCTTTTGGCGACCT+CGG - chr1.2:80642836-80642855 None:intergenic 50.0%
!! GTCCGGTTGATGGGATGAAT+AGG + chr1.2:80643225-80643244 MS.gene92957:CDS 50.0%
GAGCAGCATCTGCACCACAA+AGG - chr1.2:80642947-80642966 None:intergenic 55.0%
TGAGCCGAGCCATTTGCTCA+AGG + chr1.2:80643175-80643194 MS.gene92957:CDS 55.0%
! GGTGGGCTTGTCCGGTTGAT+GGG + chr1.2:80643216-80643235 MS.gene92957:CDS 60.0%
!! TGGTGGGCTTGTCCGGTTGA+TGG + chr1.2:80643215-80643234 MS.gene92957:CDS 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 80642813 80643499 80642813 ID=MS.gene92957
chr1.2 mRNA 80642813 80643499 80642813 ID=MS.gene92957.t1;Parent=MS.gene92957
chr1.2 exon 80642813 80643499 80642813 ID=MS.gene92957.t1.exon1;Parent=MS.gene92957.t1
chr1.2 CDS 80642813 80643499 80642813 ID=cds.MS.gene92957.t1;Parent=MS.gene92957.t1
Gene Sequence

>MS.gene92957

ATGTCAAACGGAAAGAAAGGCCGAGGTCGCCAAAAGATCGAGATGAAAAAGATGAGCAACGAGAGCAACCTGCAAGTGACTTTCTCAAAGCGTCGTAGCGGACTCTTCAAGAAAGCTAGTGAGCTTTGCACCCTTTGTGGTGCAGATGCTGCTCTCGTTGTATTCTCACCTAGTGGAAAAGTATTTTCCTTTGGTCACCCCAATCTTGATACGGTCATAAACCGCTATCTTTCTCTGGTACCACCACAAAACAACGGTACCATGCAACTCATTGAGGCTCACCGCAATGCCAACGTTCGTGAACTCAATGCTCAGGTTACTCAAATCAACAGCACGCTGGATGCCGAGAAGAAGATTGGAGATGAGCCGAGCCATTTGCTCAAGGAAATAGAGGCTAATTTTTGGTGGGCTTGTCCGGTTGATGGGATGAATAGGGATCAACTTGAATTATTCAAAAAGGCATTGGAGGAGCTTAAGAAACTTCTAATTCAGCATGCTACAACTCGAACTCTTCCATCTTTTGTTGGCAATGCTTCTTCCTCGAACATTTATCTCCATCATCAGCCAAATGCTCAACAATCTGAAATGTTGCCACCACATTTTTTTCAAAATCCTATGTTGCAATTGCAGCCTCATTTGTTTGATGGATCAATGATGCCTCACCATGGCTTCAATAATATGGTGTAA
Protein sequence

>MS.gene92957.t1

MSNGKKGRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADAALVVFSPSGKVFSFGHPNLDTVINRYLSLVPPQNNGTMQLIEAHRNANVRELNAQVTQINSTLDAEKKIGDEPSHLLKEIEANFWWACPVDGMNRDQLELFKKALEELKKLLIQHATTRTLPSFVGNASSSNIYLHHQPNAQQSEMLPPHFFQNPMLQLQPHLFDGSMMPHHGFNNMV