AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene92963

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92963.t1 MTR_1g108490 95.489 266 12 0 1 266 1 266 0.0 531
MS.gene92963.t1 MTR_1g108490 96.135 207 8 0 1 207 1 207 7.18e-151 419
MS.gene92963.t1 MTR_7g082950 46.602 206 97 5 57 258 14 210 5.97e-66 204
MS.gene92963.t1 MTR_8g467220 39.919 248 138 3 1 238 1 247 1.54e-55 180
MS.gene92963.t1 MTR_7g082950 53.548 155 59 5 57 207 14 159 2.16e-52 168
MS.gene92963.t1 MTR_5g040650 44.920 187 99 3 55 238 66 251 1.65e-48 162
MS.gene92963.t1 MTR_5g040650 43.784 185 101 2 55 236 66 250 2.47e-48 161
MS.gene92963.t1 MTR_7g109460 35.874 223 130 4 45 264 6 218 1.91e-47 157
MS.gene92963.t1 MTR_7g109460 41.566 166 87 3 45 207 6 164 8.46e-40 136
MS.gene92963.t1 MTR_1g087150 38.636 220 125 4 45 255 6 224 9.36e-38 133
MS.gene92963.t1 MTR_1g087150 37.563 197 118 2 45 236 6 202 9.71e-35 124
MS.gene92963.t1 MTR_7g010610 55.224 67 28 1 54 118 30 96 4.43e-20 85.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene92963.t1 AT2G01275 58.120 234 92 2 1 234 1 228 7.41e-96 282
MS.gene92963.t1 AT2G01275 58.120 234 92 2 1 234 1 228 7.41e-96 282
MS.gene92963.t1 AT2G01275 58.120 234 92 2 1 234 1 228 7.41e-96 282
MS.gene92963.t1 AT2G01275 58.120 234 92 2 1 234 27 254 9.03e-96 283
MS.gene92963.t1 AT2G01275 58.120 234 92 2 1 234 27 254 9.03e-96 283
MS.gene92963.t1 AT5G38070 41.897 253 129 4 1 250 1 238 1.87e-59 189
MS.gene92963.t1 AT2G02960 45.109 184 98 2 57 238 41 223 6.46e-51 168
MS.gene92963.t1 AT2G02960 45.109 184 98 2 57 238 41 223 6.46e-51 168
MS.gene92963.t1 AT2G02960 45.109 184 98 2 57 238 41 223 6.46e-51 168
MS.gene92963.t1 AT2G02960 45.109 184 98 2 57 238 41 223 6.46e-51 168
MS.gene92963.t1 AT2G02960 45.109 184 98 2 57 238 41 223 6.46e-51 168
MS.gene92963.t1 AT3G47550 41.200 250 133 6 1 238 1 248 1.45e-47 160
MS.gene92963.t1 AT3G47550 41.200 250 133 6 1 238 1 248 1.45e-47 160
MS.gene92963.t1 AT1G14260 43.455 191 104 2 57 245 55 243 5.26e-46 155
MS.gene92963.t1 AT1G14260 43.455 191 104 2 57 245 55 243 5.26e-46 155
MS.gene92963.t1 AT1G14260 43.455 191 104 2 57 245 55 243 5.26e-46 155
MS.gene92963.t1 AT3G47550 40.249 241 131 5 1 229 1 240 6.26e-45 152
MS.gene92963.t1 AT2G02960 50.000 134 67 0 57 190 41 174 1.15e-39 139
MS.gene92963.t1 AT5G62460 44.809 183 96 3 58 236 90 271 2.71e-39 139
MS.gene92963.t1 AT5G62460 44.809 183 96 3 58 236 77 258 2.95e-39 139
MS.gene92963.t1 AT5G62460 44.809 183 96 3 58 236 77 258 2.95e-39 139
MS.gene92963.t1 AT1G02610 35.122 205 128 3 59 262 20 220 2.54e-38 134
MS.gene92963.t1 AT4G02075 37.811 201 114 3 42 242 3 192 2.84e-38 134
MS.gene92963.t1 AT3G47550 40.860 186 98 4 1 175 1 185 2.93e-38 134
MS.gene92963.t1 AT1G02610 36.932 176 107 2 59 234 20 191 1.12e-37 132
MS.gene92963.t1 AT4G02075 38.191 199 112 3 42 240 3 190 1.17e-37 132
MS.gene92963.t1 AT4G02075 40.588 170 89 4 42 210 3 161 7.45e-29 108

Find 61 sgRNAs with CRISPR-Local

Find 156 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GACGTATTCCAATGAGTTTC+AGG 0.200352 1.2:+80560239 MS.gene92963:CDS
CTGTTTATATCAGGGGAAAT+TGG 0.204539 1.2:+80560355 MS.gene92963:intron
TTTGATAGGTGTTATTATTT+CGG 0.280078 1.2:+80560766 MS.gene92963:intron
AAGATGGATATTAAATGTTC+CGG 0.324167 1.2:+80559089 MS.gene92963:CDS
CCTGCATTCTGCCAGCTTCC+CGG 0.354273 1.2:-80559108 None:intergenic
TCAATATTCAACCTCTTCTT+CGG 0.364674 1.2:+80560461 MS.gene92963:CDS
CGATCATTATTTGTTGAAGA+TGG 0.367463 1.2:+80559073 MS.gene92963:CDS
AGACTTAAACAGTACTCATT+TGG 0.373861 1.2:+80560392 MS.gene92963:CDS
CAATATTCAACCTCTTCTTC+GGG 0.377237 1.2:+80560462 MS.gene92963:CDS
GGAACAAGGTGTCTCCATAT+TGG 0.390442 1.2:-80559156 None:intergenic
TACACTAAATGCATGATATG+AGG 0.394900 1.2:-80561052 None:intergenic
TGATGATGATCATTCCAATA+TGG 0.416015 1.2:+80559142 MS.gene92963:CDS
GCTCTAATCATGAAGTATAT+AGG 0.421934 1.2:-80560807 None:intergenic
GGAGGAGGAGCTGTGTAATC+AGG 0.426781 1.2:-80560202 None:intergenic
TTCCTGTTGTGGTAGTTTGA+AGG 0.427356 1.2:+80559175 MS.gene92963:CDS
GATCATAGTTAGAATTGATA+AGG 0.427640 1.2:-80560440 None:intergenic
TGTTTATATCAGGGGAAATT+GGG 0.428437 1.2:+80560356 MS.gene92963:intron
AACCTTCAAACTACCACAAC+AGG 0.428625 1.2:-80559177 None:intergenic
ACTCTTCCCCTCGTAATTAG+TGG 0.433107 1.2:+80560635 MS.gene92963:CDS
AGATGGATATTAAATGTTCC+GGG 0.433971 1.2:+80559090 MS.gene92963:CDS
TATTAAATGTTCCGGGAAGC+TGG 0.437118 1.2:+80559097 MS.gene92963:CDS
TGCGATGCAGGCTGCATCCT+CGG 0.439651 1.2:+80559031 MS.gene92963:CDS
AAGCAGAAAGCGTGCGATGC+AGG 0.450034 1.2:+80559019 MS.gene92963:CDS
GGAAGTTACCTGAAACTCAT+TGG 0.451447 1.2:-80560247 None:intergenic
GATGTTGTCTCCGATGTCGC+TGG 0.455481 1.2:-80560842 None:intergenic
GTGTTATTATTTCGGAGTGC+TGG 0.469107 1.2:+80560774 MS.gene92963:CDS
TGCAGAACATACCATGAAAA+GGG 0.471798 1.2:-80560678 None:intergenic
ATGCAGAACATACCATGAAA+AGG 0.472006 1.2:-80560679 None:intergenic
CAGTACTCATTTGGTTAGCA+TGG 0.474734 1.2:+80560401 MS.gene92963:CDS
TTCATCTGATGATGAAATAG+AGG 0.487470 1.2:+80561009 MS.gene92963:CDS
ACCGCTGTATACATCTTCTG+TGG 0.517155 1.2:-80559993 None:intergenic
GCTGTGTAATCAGGCTTGAA+TGG 0.517289 1.2:-80560193 None:intergenic
ACTTTGATTTACTCGTTGAT+CGG 0.526546 1.2:+80558961 MS.gene92963:CDS
AGTTAGAATTGATAAGGCTC+TGG 0.529910 1.2:-80560434 None:intergenic
TTGATAAGGCTCTGGTCAGT+GGG 0.533518 1.2:-80560426 None:intergenic
CCGGGAAGCTGGCAGAATGC+AGG 0.535324 1.2:+80559108 MS.gene92963:CDS
TTAGGAGCATCCTAGTGCCT+TGG 0.550967 1.2:+80560982 MS.gene92963:intron
CACATGTGAGATATGCCATC+AGG 0.551600 1.2:+80560038 MS.gene92963:CDS
ATTGATAAGGCTCTGGTCAG+TGG 0.565136 1.2:-80560427 None:intergenic
ACAGCGGTGGTGTAATGAGA+AGG 0.570745 1.2:+80560008 MS.gene92963:CDS
GAGACACCTTGTTCCTGTTG+TGG 0.577363 1.2:+80559164 MS.gene92963:CDS
CTTTATTTCCACTAATTACG+AGG 0.578088 1.2:-80560643 None:intergenic
TATCAAACTTCCCGAAGAAG+AGG 0.579750 1.2:-80560472 None:intergenic
TTTATTTCCACTAATTACGA+GGG 0.580239 1.2:-80560642 None:intergenic
TGGCACTAATCCAGCGACAT+CGG 0.586438 1.2:+80560832 MS.gene92963:CDS
GATGAACTGACCAAGGCACT+AGG 0.595162 1.2:-80560992 None:intergenic
ATGTCGCTGGATTAGTGCCA+CGG 0.608894 1.2:-80560829 None:intergenic
CCGCTGTATACATCTTCTGT+GGG 0.610748 1.2:-80559992 None:intergenic
ATACTTCATGATTAGAGCCG+TGG 0.621777 1.2:+80560812 MS.gene92963:CDS
CAGCGGTGGTGTAATGAGAA+GGG 0.623007 1.2:+80560009 MS.gene92963:CDS
GCAGAACATACCATGAAAAG+GGG 0.623505 1.2:-80560677 None:intergenic
ATATGAGGTTGCGACTGCAA+AGG 0.641191 1.2:-80561037 None:intergenic
AAACTACCACAACAGGAACA+AGG 0.641634 1.2:-80559170 None:intergenic
ATCATCAGATGAACTGACCA+AGG 0.647819 1.2:-80560999 None:intergenic
CAGAACATACCATGAAAAGG+GGG 0.660863 1.2:-80560676 None:intergenic
ACAGAAGATGTATACAGCGG+TGG 0.682707 1.2:+80559995 MS.gene92963:CDS
GATGCAGGCTGCATCCTCGG+AGG 0.685852 1.2:+80559034 MS.gene92963:CDS
TTATTTCCACTAATTACGAG+GGG 0.695633 1.2:-80560641 None:intergenic
CTGATGGCATATCTCACATG+TGG 0.721386 1.2:-80560037 None:intergenic
TTCTGTGCTAGTCACCTCCG+AGG 0.721922 1.2:-80559048 None:intergenic
CCCACAGAAGATGTATACAG+CGG 0.758174 1.2:+80559992 MS.gene92963:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATCATCAATTATAACATAAT+AGG - chr1.2:80560147-80560166 None:intergenic 15.0%
!! ATTTGCATGTTAAAATTTAT+TGG + chr1.2:80559306-80559325 MS.gene92963:intron 15.0%
!! TCATCAATTATAACATAATA+GGG - chr1.2:80560146-80560165 None:intergenic 15.0%
!! AAAAATGAAAATATTGTGCA+TGG - chr1.2:80560271-80560290 None:intergenic 20.0%
!! ATCAATTATAACATAATAGG+GGG - chr1.2:80560144-80560163 None:intergenic 20.0%
!! CATCAATTATAACATAATAG+GGG - chr1.2:80560145-80560164 None:intergenic 20.0%
!! TAAAATAAACCAGTAAGATT+TGG - chr1.2:80559389-80559408 None:intergenic 20.0%
!! TAGTCACATATAAAAAGATT+TGG + chr1.2:80559473-80559492 MS.gene92963:intron 20.0%
!! TTGCATTATTTATAATCCAT+GGG - chr1.2:80559840-80559859 None:intergenic 20.0%
!!! AAAGATTTGGTTAAAATGAT+AGG + chr1.2:80559486-80559505 MS.gene92963:intron 20.0%
!!! AAATCTTTTTATATGTGACT+AGG - chr1.2:80559474-80559493 None:intergenic 20.0%
!!! ACACAATGATATTTTATTTG+TGG + chr1.2:80560113-80560132 MS.gene92963:intron 20.0%
!!! AGTAATCACATGTTTTAATA+TGG + chr1.2:80559226-80559245 MS.gene92963:intron 20.0%
!!! GTAATCACATGTTTTAATAT+GGG + chr1.2:80559227-80559246 MS.gene92963:intron 20.0%
!!! TTTATTTTATTTCTGTTGGT+GGG + chr1.2:80559400-80559419 MS.gene92963:intron 20.0%
!!! TTTGATAGGTGTTATTATTT+CGG + chr1.2:80560766-80560785 MS.gene92963:intron 20.0%
! AAATTCATTTCTGTTGTGTA+AGG - chr1.2:80559732-80559751 None:intergenic 25.0%
! AAGATGGATATTAAATGTTC+CGG + chr1.2:80559089-80559108 MS.gene92963:CDS 25.0%
! ATAAAATAGCCAAATCTTAC+TGG + chr1.2:80559377-80559396 MS.gene92963:intron 25.0%
! ATAACATACAATTTCAGTGA+TGG + chr1.2:80560700-80560719 MS.gene92963:intron 25.0%
! ATAATGCAAGTAGTTGTAAA+CGG + chr1.2:80559851-80559870 MS.gene92963:intron 25.0%
! ATACAAAACTGTAATTGCAA+AGG - chr1.2:80559809-80559828 None:intergenic 25.0%
! CTTGCATTATTTATAATCCA+TGG - chr1.2:80559841-80559860 None:intergenic 25.0%
! GATCATAGTTAGAATTGATA+AGG - chr1.2:80560443-80560462 None:intergenic 25.0%
! TACACAACAGAAATGAATTT+GGG + chr1.2:80559732-80559751 MS.gene92963:intron 25.0%
! TTACACAACAGAAATGAATT+TGG + chr1.2:80559731-80559750 MS.gene92963:intron 25.0%
! TTTATTTCCACTAATTACGA+GGG - chr1.2:80560645-80560664 None:intergenic 25.0%
!! ATGGATTATACACTGAATAA+AGG - chr1.2:80559447-80559466 None:intergenic 25.0%
!! TTTTGATCATTTTCTTACCA+AGG + chr1.2:80560723-80560742 MS.gene92963:intron 25.0%
!!! AATTACAGTTTTGTATGTGA+TGG + chr1.2:80559813-80559832 MS.gene92963:intron 25.0%
!!! CTGGTTTATTTTATTTCTGT+TGG + chr1.2:80559396-80559415 MS.gene92963:intron 25.0%
!!! GTTTATTTTATTTCTGTTGG+TGG + chr1.2:80559399-80559418 MS.gene92963:intron 25.0%
AAAGTTTCTCAGCTGATATT+TGG + chr1.2:80559904-80559923 MS.gene92963:intron 30.0%
ACACAACAGAAATGAATTTG+GGG + chr1.2:80559733-80559752 MS.gene92963:intron 30.0%
ACTTACAAGATGTGATTAAC+TGG + chr1.2:80559599-80559618 MS.gene92963:intron 30.0%
AGACTTAAACAGTACTCATT+TGG + chr1.2:80560392-80560411 MS.gene92963:CDS 30.0%
AGATGGATATTAAATGTTCC+GGG + chr1.2:80559090-80559109 MS.gene92963:CDS 30.0%
AGGGTTCACATATTAACTTA+CGG - chr1.2:80560300-80560319 None:intergenic 30.0%
CATGAATCTTCATATACTCA+CGG + chr1.2:80560919-80560938 MS.gene92963:intron 30.0%
CTAATAGTAACAAATGACCA+AGG - chr1.2:80560966-80560985 None:intergenic 30.0%
GCTCTAATCATGAAGTATAT+AGG - chr1.2:80560810-80560829 None:intergenic 30.0%
TACACTAAATGCATGATATG+AGG - chr1.2:80561055-80561074 None:intergenic 30.0%
TATCTCTATCTGACTATTTC+TGG + chr1.2:80559515-80559534 MS.gene92963:intron 30.0%
TCAATATTCAACCTCTTCTT+CGG + chr1.2:80560461-80560480 MS.gene92963:CDS 30.0%
TGTTAGGAACAAATATAAGC+TGG - chr1.2:80559767-80559786 None:intergenic 30.0%
TGTTTATATCAGGGGAAATT+GGG + chr1.2:80560356-80560375 MS.gene92963:intron 30.0%
TTATATGTGACTAGGTAAGA+TGG - chr1.2:80559466-80559485 None:intergenic 30.0%
TTATTTCCACTAATTACGAG+GGG - chr1.2:80560644-80560663 None:intergenic 30.0%
TTGTGTACAAGTTTGTAGAA+AGG - chr1.2:80560099-80560118 None:intergenic 30.0%
! AAAATGGCATCGAAAAAACA+GGG - chr1.2:80560319-80560338 None:intergenic 30.0%
! AAAGGCATACATTCTTTAGA+AGG - chr1.2:80560538-80560557 None:intergenic 30.0%
! AAGGCATACATTCTTTAGAA+GGG - chr1.2:80560537-80560556 None:intergenic 30.0%
! ACACTGAATAAAGGTTTTCA+GGG - chr1.2:80559438-80559457 None:intergenic 30.0%
! ACTTTGATTTACTCGTTGAT+CGG + chr1.2:80558961-80558980 MS.gene92963:CDS 30.0%
! CGATCATTATTTGTTGAAGA+TGG + chr1.2:80559073-80559092 MS.gene92963:CDS 30.0%
! CTTGGTCATTTGTTACTATT+AGG + chr1.2:80560964-80560983 MS.gene92963:intron 30.0%
! CTTTATTTCCACTAATTACG+AGG - chr1.2:80560646-80560665 None:intergenic 30.0%
! GAACAATTTAAGTTACCTGA+TGG - chr1.2:80560056-80560075 None:intergenic 30.0%
! GTGATTTGTAAGAATTTGTG+AGG + chr1.2:80559271-80559290 MS.gene92963:intron 30.0%
! TACACTGAATAAAGGTTTTC+AGG - chr1.2:80559439-80559458 None:intergenic 30.0%
! TGATGATGATCATTCCAATA+TGG + chr1.2:80559142-80559161 MS.gene92963:CDS 30.0%
! TTCATCTGATGATGAAATAG+AGG + chr1.2:80561009-80561028 MS.gene92963:CDS 30.0%
!! CAATTTGATGGAGTTTTGAT+AGG + chr1.2:80560752-80560771 MS.gene92963:intron 30.0%
AGGAACAAATATAAGCTGGT+TGG - chr1.2:80559763-80559782 None:intergenic 35.0%
AGTTAGAATTGATAAGGCTC+TGG - chr1.2:80560437-80560456 None:intergenic 35.0%
ATACGTCCAAACTGAAAAAG+TGG - chr1.2:80560226-80560245 None:intergenic 35.0%
ATCGAGTGAGTTTCTATCAT+AGG + chr1.2:80560862-80560881 MS.gene92963:intron 35.0%
ATGAAGATTCATGTGCACAA+TGG - chr1.2:80560912-80560931 None:intergenic 35.0%
ATGCAGAACATACCATGAAA+AGG - chr1.2:80560682-80560701 None:intergenic 35.0%
CAATATTCAACCTCTTCTTC+GGG + chr1.2:80560462-80560481 MS.gene92963:CDS 35.0%
CCATCAAATTGAGAAAACCT+TGG - chr1.2:80560743-80560762 None:intergenic 35.0%
CTGTTTATATCAGGGGAAAT+TGG + chr1.2:80560355-80560374 MS.gene92963:intron 35.0%
GCAAACCAAATATGTTGTGA+TGG + chr1.2:80559328-80559347 MS.gene92963:intron 35.0%
GTTCACATATTAACTTACGG+AGG - chr1.2:80560297-80560316 None:intergenic 35.0%
TATACTCACGGTAAATTCTC+TGG + chr1.2:80560931-80560950 MS.gene92963:intron 35.0%
TGCAGAACATACCATGAAAA+GGG - chr1.2:80560681-80560700 None:intergenic 35.0%
! ATTCCCATGCTGTTTATATC+AGG + chr1.2:80560346-80560365 MS.gene92963:intron 35.0%
! CACTGAATAAAGGTTTTCAG+GGG - chr1.2:80559437-80559456 None:intergenic 35.0%
! CCAAGGTTTTCTCAATTTGA+TGG + chr1.2:80560740-80560759 MS.gene92963:intron 35.0%
! GAAAATGGCATCGAAAAAAC+AGG - chr1.2:80560320-80560339 None:intergenic 35.0%
! TTCCCATGCTGTTTATATCA+GGG + chr1.2:80560347-80560366 MS.gene92963:intron 35.0%
!! ATTTCTGGCAAAGGTTAGAT+AGG + chr1.2:80559530-80559549 MS.gene92963:intron 35.0%
!! CAAATATGTTGTGATGGACA+CGG + chr1.2:80559334-80559353 MS.gene92963:intron 35.0%
!! TATCTGACTATTTCTGGCAA+AGG + chr1.2:80559521-80559540 MS.gene92963:intron 35.0%
!!! TTCTCTGGTGTTTTTTTCCT+TGG + chr1.2:80560946-80560965 MS.gene92963:intron 35.0%
AAACTACCACAACAGGAACA+AGG - chr1.2:80559173-80559192 None:intergenic 40.0%
AACCTTCAAACTACCACAAC+AGG - chr1.2:80559180-80559199 None:intergenic 40.0%
ATACTTCATGATTAGAGCCG+TGG + chr1.2:80560812-80560831 MS.gene92963:CDS 40.0%
ATCATCAGATGAACTGACCA+AGG - chr1.2:80561002-80561021 None:intergenic 40.0%
ATGTATGCCTTTACACGTTC+TGG + chr1.2:80560546-80560565 MS.gene92963:intron 40.0%
CAGAACATACCATGAAAAGG+GGG - chr1.2:80560679-80560698 None:intergenic 40.0%
CAGTACTCATTTGGTTAGCA+TGG + chr1.2:80560401-80560420 MS.gene92963:CDS 40.0%
CATGGGAATGCATTGGAAAA+TGG - chr1.2:80560335-80560354 None:intergenic 40.0%
CGTGTCCATCACAACATATT+TGG - chr1.2:80559336-80559355 None:intergenic 40.0%
GACGTATTCCAATGAGTTTC+AGG + chr1.2:80560239-80560258 MS.gene92963:CDS 40.0%
GCAGAACATACCATGAAAAG+GGG - chr1.2:80560680-80560699 None:intergenic 40.0%
GCATAGAAAGCAGGAAACTT+AGG - chr1.2:80559878-80559897 None:intergenic 40.0%
GGAAGTTACCTGAAACTCAT+TGG - chr1.2:80560250-80560269 None:intergenic 40.0%
GTAGAAAGGAGATGCAAATC+AGG - chr1.2:80560085-80560104 None:intergenic 40.0%
GTTCCTAACATGCATTGCAT+TGG + chr1.2:80559777-80559796 MS.gene92963:intron 40.0%
TAAACAGCATGGGAATGCAT+TGG - chr1.2:80560342-80560361 None:intergenic 40.0%
TATCAAACTTCCCGAAGAAG+AGG - chr1.2:80560475-80560494 None:intergenic 40.0%
TATTAAATGTTCCGGGAAGC+TGG + chr1.2:80559097-80559116 MS.gene92963:CDS 40.0%
TCAAGGGTCTAATGGAGAAA+AGG - chr1.2:80559557-80559576 None:intergenic 40.0%
TCACCAATGCAATGCATGTT+AGG - chr1.2:80559783-80559802 None:intergenic 40.0%
TCCCCTGATATAAACAGCAT+GGG - chr1.2:80560352-80560371 None:intergenic 40.0%
TGGCGAGGAGACAAAAAAAA+AGG - chr1.2:80560892-80560911 None:intergenic 40.0%
TTCCCCTGATATAAACAGCA+TGG - chr1.2:80560353-80560372 None:intergenic 40.0%
TTCCTGTTGTGGTAGTTTGA+AGG + chr1.2:80559175-80559194 MS.gene92963:CDS 40.0%
TTCTTCTCATGTGCAGTTCA+TGG + chr1.2:80560592-80560611 MS.gene92963:intron 40.0%
! AACATGCATTGCATTGGTGA+AGG + chr1.2:80559783-80559802 MS.gene92963:intron 40.0%
! CTATTCTTTCCCCCTTTTCA+TGG + chr1.2:80560667-80560686 MS.gene92963:CDS 40.0%
! GTGTTATTATTTCGGAGTGC+TGG + chr1.2:80560774-80560793 MS.gene92963:CDS 40.0%
! TCCCATGCTGTTTATATCAG+GGG + chr1.2:80560348-80560367 MS.gene92963:intron 40.0%
! TCTGTTGTGTAAGGTGTCTA+AGG - chr1.2:80559723-80559742 None:intergenic 40.0%
! TTTTGTATGTGATGGTCCCA+TGG + chr1.2:80559821-80559840 MS.gene92963:intron 40.0%
ACAGAAGATGTATACAGCGG+TGG + chr1.2:80559995-80560014 MS.gene92963:CDS 45.0%
ACCGCTGTATACATCTTCTG+TGG - chr1.2:80559996-80560015 None:intergenic 45.0%
ACTCTTCCCCTCGTAATTAG+TGG + chr1.2:80560635-80560654 MS.gene92963:CDS 45.0%
ATATGAGGTTGCGACTGCAA+AGG - chr1.2:80561040-80561059 None:intergenic 45.0%
CACATGTGAGATATGCCATC+AGG + chr1.2:80560038-80560057 MS.gene92963:CDS 45.0%
CCAAACTGAAAAAGTGGAGG+AGG - chr1.2:80560220-80560239 None:intergenic 45.0%
CCCACAGAAGATGTATACAG+CGG + chr1.2:80559992-80560011 MS.gene92963:CDS 45.0%
CCGCTGTATACATCTTCTGT+GGG - chr1.2:80559995-80560014 None:intergenic 45.0%
CGTCCAAACTGAAAAAGTGG+AGG - chr1.2:80560223-80560242 None:intergenic 45.0%
CTGATGGCATATCTCACATG+TGG - chr1.2:80560040-80560059 None:intergenic 45.0%
GCTGTGTAATCAGGCTTGAA+TGG - chr1.2:80560196-80560215 None:intergenic 45.0%
GGAGATGCAAATCAGGAACT+TGG - chr1.2:80560078-80560097 None:intergenic 45.0%
GTCGTAACCAGAACGTGTAA+AGG - chr1.2:80560556-80560575 None:intergenic 45.0%
TCAGCTGAGAAACTTTCGTC+AGG - chr1.2:80559900-80559919 None:intergenic 45.0%
TTCTGCTGTCAAGGGTCTAA+TGG - chr1.2:80559565-80559584 None:intergenic 45.0%
TTTCGTCAGGCATAGAAAGC+AGG - chr1.2:80559887-80559906 None:intergenic 45.0%
! ATTGATAAGGCTCTGGTCAG+TGG - chr1.2:80560430-80560449 None:intergenic 45.0%
! GGAACAAGGTGTCTCCATAT+TGG - chr1.2:80559159-80559178 None:intergenic 45.0%
! TTGATAAGGCTCTGGTCAGT+GGG - chr1.2:80560429-80560448 None:intergenic 45.0%
!!! CCTCCTCCACTTTTTCAGTT+TGG + chr1.2:80560217-80560236 MS.gene92963:CDS 45.0%
ACAGCGGTGGTGTAATGAGA+AGG + chr1.2:80560008-80560027 MS.gene92963:CDS 50.0%
CAGCGGTGGTGTAATGAGAA+GGG + chr1.2:80560009-80560028 MS.gene92963:CDS 50.0%
GAGACACCTTGTTCCTGTTG+TGG + chr1.2:80559164-80559183 MS.gene92963:CDS 50.0%
GATTCATGTGCACAATGGCG+AGG - chr1.2:80560907-80560926 None:intergenic 50.0%
TGGCACTAATCCAGCGACAT+CGG + chr1.2:80560832-80560851 MS.gene92963:CDS 50.0%
! GATGAACTGACCAAGGCACT+AGG - chr1.2:80560995-80561014 None:intergenic 50.0%
!! ATGTCGCTGGATTAGTGCCA+CGG - chr1.2:80560832-80560851 None:intergenic 50.0%
!! TTAGGAGCATCCTAGTGCCT+TGG + chr1.2:80560982-80561001 MS.gene92963:intron 50.0%
ACCACCTCGTTCTGCTGTCA+AGG - chr1.2:80559574-80559593 None:intergenic 55.0%
AGACCCTTGACAGCAGAACG+AGG + chr1.2:80559567-80559586 MS.gene92963:intron 55.0%
CCACCTCGTTCTGCTGTCAA+GGG - chr1.2:80559573-80559592 None:intergenic 55.0%
GATGTTGTCTCCGATGTCGC+TGG - chr1.2:80560845-80560864 None:intergenic 55.0%
GGAGGAGGAGCTGTGTAATC+AGG - chr1.2:80560205-80560224 None:intergenic 55.0%
TTCTGTGCTAGTCACCTCCG+AGG - chr1.2:80559051-80559070 None:intergenic 55.0%
! AAGCAGAAAGCGTGCGATGC+AGG + chr1.2:80559019-80559038 MS.gene92963:CDS 55.0%
CCCTTGACAGCAGAACGAGG+TGG + chr1.2:80559570-80559589 MS.gene92963:intron 60.0%
CCTGCATTCTGCCAGCTTCC+CGG - chr1.2:80559111-80559130 None:intergenic 60.0%
TGCGATGCAGGCTGCATCCT+CGG + chr1.2:80559031-80559050 MS.gene92963:CDS 60.0%
CCGGGAAGCTGGCAGAATGC+AGG + chr1.2:80559108-80559127 MS.gene92963:CDS 65.0%
GATGCAGGCTGCATCCTCGG+AGG + chr1.2:80559034-80559053 MS.gene92963:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 80558951 80561075 80558951 ID=MS.gene92963
chr1.2 mRNA 80558951 80561075 80558951 ID=MS.gene92963.t1;Parent=MS.gene92963
chr1.2 exon 80558951 80559196 80558951 ID=MS.gene92963.t1.exon1;Parent=MS.gene92963.t1
chr1.2 CDS 80558951 80559196 80558951 ID=cds.MS.gene92963.t1;Parent=MS.gene92963.t1
chr1.2 exon 80559988 80560059 80559988 ID=MS.gene92963.t1.exon2;Parent=MS.gene92963.t1
chr1.2 CDS 80559988 80560059 80559988 ID=cds.MS.gene92963.t1;Parent=MS.gene92963.t1
chr1.2 exon 80560193 80560260 80560193 ID=MS.gene92963.t1.exon3;Parent=MS.gene92963.t1
chr1.2 CDS 80560193 80560260 80560193 ID=cds.MS.gene92963.t1;Parent=MS.gene92963.t1
chr1.2 exon 80560368 80560518 80560368 ID=MS.gene92963.t1.exon4;Parent=MS.gene92963.t1
chr1.2 CDS 80560368 80560518 80560368 ID=cds.MS.gene92963.t1;Parent=MS.gene92963.t1
chr1.2 exon 80560608 80560688 80560608 ID=MS.gene92963.t1.exon5;Parent=MS.gene92963.t1
chr1.2 CDS 80560608 80560688 80560608 ID=cds.MS.gene92963.t1;Parent=MS.gene92963.t1
chr1.2 exon 80560774 80560866 80560774 ID=MS.gene92963.t1.exon6;Parent=MS.gene92963.t1
chr1.2 CDS 80560774 80560866 80560774 ID=cds.MS.gene92963.t1;Parent=MS.gene92963.t1
chr1.2 exon 80560986 80561075 80560986 ID=MS.gene92963.t1.exon7;Parent=MS.gene92963.t1
chr1.2 CDS 80560986 80561075 80560986 ID=cds.MS.gene92963.t1;Parent=MS.gene92963.t1
Gene Sequence

>MS.gene92963

ATGGGGGATCACTTTGATTTACTCGTTGATCGGTTGCTCACTGAATCGACATTAGAAGCTGCGATTGAAAGCAGAAAGCGTGCGATGCAGGCTGCATCCTCGGAGGTGACTAGCACAGAAGTCGATCATTATTTGTTGAAGATGGATATTAAATGTTCCGGGAAGCTGGCAGAATGCAGGATATGTCATGATGATGATGATCATTCCAATATGGAGACACCTTGTTCCTGTTGTGGTAGTTTGAAGGTTAGCTCTACACTAGTATGTTTGCAATCAGTAATCACATGTTTTAATATGGGAAATGATTAAGCATTTATATTGTGATTTGTAAGAATTTGTGAGGCATGTTGATGAAATTTGCATGTTAAAATTTATTGGCAAACCAAATATGTTGTGATGGACACGGTTTCGTGAAGAACTTCAAATATAAAATAGCCAAATCTTACTGGTTTATTTTATTTCTGTTGGTGGGATAACTTTTAACCCCTGAAAACCTTTATTCAGTGTATAATCCATCTTACCTAGTCACATATAAAAAGATTTGGTTAAAATGATAGGAACAAATATCTCTATCTGACTATTTCTGGCAAAGGTTAGATAGGACCTTTTCTCCATTAGACCCTTGACAGCAGAACGAGGTGGTAAAGAACTTACAAGATGTGATTAACTGGAAGCATTCTTATTTTGCACGAAATTTTGAAGAAATGTGTGAACTATGCATTATAGAAGCTTCTGTCACTATTTGTTTGACATGCTATCATTAAGTAGACCTTAGACACCTTACACAACAGAAATGAATTTGGGGAATACCAACCAGCTTATATTTGTTCCTAACATGCATTGCATTGGTGAAGGCCTTTGCAATTACAGTTTTGTATGTGATGGTCCCATGGATTATAAATAATGCAAGTAGTTGTAAACGGTCCTAAGTTTCCTGCTTTCTATGCCTGACGAAAGTTTCTCAGCTGATATTTGGTTTATTTTGTTTTTTCTCTAAAAAAGTTGTTGATAGCTTAAACTCTAATTGATTTTTGCAGTACGCCCACAGAAGATGTATACAGCGGTGGTGTAATGAGAAGGGCGACACCACATGTGAGATATGCCATCAGGTAACTTAAATTGTTCCAAGTTCCTGATTTGCATCTCCTTTCTACAAACTTGTACACAATGATATTTTATTTGTGGTTTTTCCCCCTATTATGTTATAATTGATGATTTTTTTTCTTATACTGTAAATTTCAGCCATTCAAGCCTGATTACACAGCTCCTCCTCCACTTTTTCAGTTTGGACGTATTCCAATGAGTTTCAGGTAACTTCCATGCACAATATTTTCATTTTTTTTCCTCCGTAAGTTAATATGTGAACCCTGTTTTTTCGATGCCATTTTCCAATGCATTCCCATGCTGTTTATATCAGGGGAAATTGGGAAATTTCGCGAAGAGACTTAAACAGTACTCATTTGGTTAGCATGGTTCCCACTGACCAGAGCCTTATCAATTCTAACTATGATCAATATTCAACCTCTTCTTCGGGAAGTTTGATATGCTGTCGTTCAGCTGCTGTCATTGTAATTTCTCTCACTCCCTTCTAAAGAATGTATGCCTTTACACGTTCTGGTTACGACATTTCTCAATCTTCATTTCTTCTCATGTGCAGTTCATGGTTCTGCTGATTTTAAGACATACTCTTCCCCTCGTAATTAGTGGAAATAAAGACTATTCTTTCCCCCTTTTCATGGTATGTTCTGCATAACATACAATTTCAGTGATGGTTTTGATCATTTTCTTACCAAGGTTTTCTCAATTTGATGGAGTTTTGATAGGTGTTATTATTTCGGAGTGCTGGTTTCGTTGTACCTATATACTTCATGATTAGAGCCGTGGCACTAATCCAGCGACATCGGAGACAACATCGAGTGAGTTTCTATCATAGGTTAACCTTTTTTTTTGTCTCCTCGCCATTGTGCACATGAATCTTCATATACTCACGGTAAATTCTCTGGTGTTTTTTTCCTTGGTCATTTGTTACTATTAGGAGCATCCTAGTGCCTTGGTCAGTTCATCTGATGATGAAATAGAGGAAGCTCCTTTGCAGTCGCAACCTCATATCATGCATTTAGTGTAA
Protein sequence

>MS.gene92963.t1

MGDHFDLLVDRLLTESTLEAAIESRKRAMQAASSEVTSTEVDHYLLKMDIKCSGKLAECRICHDDDDHSNMETPCSCCGSLKYAHRRCIQRWCNEKGDTTCEICHQPFKPDYTAPPPLFQFGRIPMSFRGNWEISRRDLNSTHLVSMVPTDQSLINSNYDQYSTSSSGSLICCRSAAVIFMVLLILRHTLPLVISGNKDYSFPLFMVLLFRSAGFVVPIYFMIRAVALIQRHRRQHREHPSALVSSSDDEIEEAPLQSQPHIMHLV