AlfalfaGEDB | MS.gene92998

M. sativa cultivar XinJiangDaYe / MS.gene92998

KEGG: -
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004672 GO:0005488 GO:0005515 GO:0005524 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0008144 GO:0008150 GO:0008152 GO:0009987 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017076 GO:0019538 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0035639 GO:0036094 GO:0036211 GO:0043167 GO:0043168 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0071704 GO:0097159 GO:0097367 GO:0140096 GO:1901265 GO:1901363 GO:1901564
PFAM: PF00069.28 PF08263.15 PF12799.10 PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92998.t1	KEH44107.1	90.7	775	64	6	1	774	1	768	7.30E-305	1056.2

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92998.t1	Q94C77	51.8	793	308	16	4	768	7	753	4.5e-138	493.4

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92998.t1	A0A072VQM8	90.7	775	64	6	1	774	1	768	5.3e-305	1056.2

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
No data available in table

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PPI:

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Gene1	Gene2	Type
MS.gene68882	MS.gene92998	PPI
MS.gene92998	MS.gene00340	PPI
MS.gene92998	MS.gene073393	PPI
MS.gene92998	MS.gene58620	PPI
MS.gene92998	MS.gene004601	PPI

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92998.t1	MTR_1g107460	93.161	775	45	6	1	774	1	768	0.0	1403
MS.gene92998.t1	MTR_4g094958	49.740	770	339	11	22	769	22	765	0.0	695
MS.gene92998.t1	MTR_4g014350	34.275	779	395	18	27	768	23	721	7.94e-130	403
MS.gene92998.t1	MTR_7g070200	34.961	778	398	20	23	768	20	721	1.50e-127	397
MS.gene92998.t1	MTR_1g109580	35.209	764	394	23	23	768	24	704	2.54e-118	373
MS.gene92998.t1	MTR_1g110280	29.215	777	370	25	14	768	19	637	3.26e-76	260
MS.gene92998.t1	MTR_5g083480	29.948	768	413	23	39	768	89	769	3.86e-72	251
MS.gene92998.t1	MTR_5g083480	29.948	768	413	23	39	768	86	766	4.82e-72	251
MS.gene92998.t1	MTR_5g078080	28.480	783	370	21	1	768	3	610	1.06e-65	230
MS.gene92998.t1	MTR_3g093710	27.671	777	375	24	6	768	11	614	6.55e-64	225

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene92998.t1	AT4G34220	51.584	789	316	15	4	768	7	753	0.0	739
MS.gene92998.t1	AT4G37250	50.460	761	355	9	12	768	10	752	0.0	694
MS.gene92998.t1	AT2G15300	50.519	770	307	16	23	768	23	742	0.0	676
MS.gene92998.t1	AT5G67280	47.013	770	367	10	6	770	13	746	0.0	647
MS.gene92998.t1	AT2G23300	50.785	764	326	16	23	770	30	759	0.0	624
MS.gene92998.t1	AT2G01210	35.379	766	409	18	23	772	20	715	5.37e-136	419
MS.gene92998.t1	AT1G25320	36.607	784	390	22	7	768	1	699	7.42e-131	405
MS.gene92998.t1	AT1G67510	34.106	777	406	19	21	768	20	719	2.25e-118	373
MS.gene92998.t1	AT1G66830	34.275	779	401	21	3	768	1	681	2.93e-117	369
MS.gene92998.t1	AT3G57830	30.401	773	372	19	24	768	25	659	1.42e-91	301

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Find 154 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGCCATTGATTCAGGTAT+TGG	0.397525	1.2:-80213222	None:intergenic
AAATGAATACACATCCCATT+TGG	0.344918	1.2:-80215105	None:intergenic
AAATGGGATGTGTATTCATT+TGG	0.349081	1.2:+80215107	MS.gene92998:CDS
AACAGTATCGTTGTGGACAA+CGG	0.557104	1.2:+80213747	MS.gene92998:CDS
AACGATTCTGGTGCTTGATA+TGG	0.355284	1.2:-80215062	None:intergenic
AACGGGAAGCTTCCGAAAGA+AGG	0.506208	1.2:+80213765	MS.gene92998:CDS
AAGATTCGTGGGTTCTGTTG+GGG	0.529754	1.2:+80214014	MS.gene92998:CDS
AAGGCTTCAGCTTATATACT+CGG	0.564628	1.2:+80213840	MS.gene92998:CDS
AAGTTTCAAAGACTGATAAA+GGG	0.480474	1.2:-80212579	None:intergenic
AATATCAACCATAGAGGAAA+TGG	0.385557	1.2:+80214918	MS.gene92998:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAATGAATACACATCCCATT+TGG	-	chr1.2:80215108-80215127	None:intergenic	30.0%
AAATGGGATGTGTATTCATT+TGG	+	chr1.2:80215107-80215126	MS.gene92998:CDS	30.0%
AAGTCTCAAAGTGTATATGT+TGG	+	chr1.2:80214347-80214366	MS.gene92998:intron	30.0%
AATATCAACCATAGAGGAAA+TGG	+	chr1.2:80214918-80214937	MS.gene92998:CDS	30.0%
AATGAATACACATCCCATTT+GGG	-	chr1.2:80215107-80215126	None:intergenic	30.0%
ACTAGTGATTCTTCTCAAAA+TGG	+	chr1.2:80213441-80213460	MS.gene92998:CDS	30.0%
AGAACAATTAATTCAACACC+AGG	+	chr1.2:80213393-80213412	MS.gene92998:CDS	30.0%
AGAACCATTGAACAAATTTG+AGG	-	chr1.2:80213061-80213080	None:intergenic	30.0%
ATACCAGATGAACTAAATTG+AGG	+	chr1.2:80214621-80214640	MS.gene92998:intron	30.0%
CAAGTTTCAAAGACTGATAA+AGG	-	chr1.2:80212583-80212602	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr1.2	gene	80212457	80215400	80212457	ID=MS.gene92998
chr1.2	mRNA	80212457	80215400	80212457	ID=MS.gene92998.t1;Parent=MS.gene92998
chr1.2	exon	80212457	80214101	80212457	ID=MS.gene92998.t1.exon1;Parent=MS.gene92998.t1
chr1.2	CDS	80212457	80214101	80212457	ID=cds.MS.gene92998.t1;Parent=MS.gene92998.t1
chr1.2	exon	80214721	80215400	80214721	ID=MS.gene92998.t1.exon2;Parent=MS.gene92998.t1
chr1.2	CDS	80214721	80215400	80214721	ID=cds.MS.gene92998.t1;Parent=MS.gene92998.t1

Gene Sequence

>MS.gene92998

ATGAAGCTTAACACACTCTTGAGAGTTTCATCTTTTCTTTTTCTTCTACTGCTTCAATATTCATATGCACTTAACTCTGATGGAATTTTCTTGCTTAAATTCAGATACTCCATCCTCAGTGACCCTTTATCAGTCTTTGAAACTTGGAACTATGATGATGCAACTCCATGTTCATGGCATGGAGTTGCATGCAGTGAATTAGGATCTCCTGATACTCCTGATTTTCTTAGAGTAACTAGCTTAATCCTTCCAAATAACCAACTTCTTGGTTCCATTGCAGAAGAATTAGGCCTAATCCAAAACCTTCATCACATTGATCTCTCAGACAATTTCCTCAATGGTTCATTACCAAACTCCATCTTCAACTCTTCTCAACTACAATTCCTTTCACTCTCCAATAATAAAATCTCAGGTAAACTACCTGAGTTGATTGGTTTATCCACAAACCTTCAAAGTCTAAACCTTTCTGACAATGCATTTGCTGGGTCAATCCCAAAAAACCTCACTTCTCTACAGAATCTAACCGTTGTTTCTTTAAAAAGTAACTATTTTTCTGGTGAAATTCCAAATGTGTTGAACTCTGTTCAGATTCTAGATCTGTCCTCAAATTTGTTCAATGGTTCTCTTCCAAGTAGCTTCAATGGTGAAAATCTCCAATACTTGAATCTCTCTTATAATAAAATCTCAGGAGCAATTCCAAAAACATTTGCTAAGCACATTCCTGAAAACTCAACAATTGATCTCTCATTCAACAATCTAACAGGACCAATACCTGAATCAATGGCTTTGCTCAATCAAAAAGCAGAATCACTCTCTGGAAACTCTGATCTATGTGGAAAACCTTTGAAGAATCTTTGTATAATCCCCTCTAGTATCTCTACTCCTCCAGAGAACATCAACAACACATCATCTTCACCAGCAATTGCAGCAATACCAAGAACAATTAATTCAACACCAGGAACAAACACAAACTCAACAACATCAACTAGTGATTCTTCTCAAAATGGTCTAAAACCTACTACAATAGCAGCCATTGTTGTAGGTGACATAGCAGGCATGGGAATTTTAGCTCTTATCATTCTTTGTGTATATCAACAAAGAAAGAAAAGATATCCAAAACCAAACACTGTACTTCAAGAGAAGAAAGTGTTGGAAACTGTAGTGAAACAAGACCAAGAAGCTGTGAAAACACAAACACATTCACTTCAATGTTCTCCATGCTGTTTAACGATTAAACAACAAGACGAGACTTCAGAAGATCCAAGCTCTGAGGAGAGTGACCGCGACATTAACAGTATCGTTGTGGACAACGGGAAGCTTCCGAAAGAAGGCACATTGGTAACGGTGGACGGTGAGACGAAGCTGGATTTGGAAACATTGTTGAAGGCTTCAGCTTATATACTCGGAACAAGCCGTGCGAGTATTGTGTATAAAGCAGTTTTACAGGATGGAAGAGTTTTTGCTGTTAGAAGGATTGGTGAGTGTGGTGTTGAAAGAATGAAGGAGTTTGAGAATCAAGTGAGAGCTATTGCTAAGGTTAAGCATCCTAATTTGGTTAAGATTCGTGGGTTCTGTTGGGGTGAAGATGAGAAGCTTGTTATTTCTGATTATGTTCCTAATGGCAGCCTCTCCAGTATTGCTTACAGTAAGTTCACAATATTTTCCTCTGCATTTTGCACAAATTTGTTCAATTATAACAATGCTGATTATGAAGTTAGGGATTAACTTAACATATTAGGGAATAGGGACTATTTATAATATGTTAGGTTGTGTTTGGATAAACATTTTAATTAAACATTTACAGTACAAACACTTATTACTCATAAGTTGTTTCCATAAGCTAAGAGCTTATGAAAATAAGCTGAAAATAACTTATGGGCCTATCACAAAAAGTCTCAAAGTGTATATGTTGGTTGATAAAGTCAAATATGTCAATTCAAATAGATTTACTTTCATATTTGTTAGGAATCAAGCAAGTAGAAGAGGTAGGTGTTTATATTTGATGCGGTTAGCAATCCACGGATTCATGTAGTTATGAATGTCGATGGTTGTTTGGTCGAAATCAGACGATCTAATATTTCAAGCTTAAAATTTAAGTTATAAAAATCAAAATATACATAAAAATTTGAATCGTTCTATCTCGATCCAAATCAAAGAGTTGTTGATACCAGATGAACTAAATTGAGGTTTTTTTAAACCATTTTTTCTGACTAATTTCTTTAGGTTCATGAAAGTTAATAATTGCTTGTGTTAATGATGTTTAGGAAGAGGAGGATCATCCCCTATGAACTTATCCTTGGAAGTGCGGTTGAAGATAGCAAAAGGAGTTGCAAGAGGACTAGCTTATCTTCACGAGAAGAAACACGTGCATGGCAATGTTAAACCAAGCAGCATCTTATTAAATTCAGAAATGGAACCCATCATAAGTGATTTTGGAATTGACTTGCTTCTCTTGAATGATAATATCAACCATAGAGGAAATGGTTCATTTAGACAGTTAGTGAACCAGAGAACCCTACAACCACAACAAGACATTCTCACTGGTTCAACTCCTAGCCCCTATGGGACAATGGGGCCATCATCATCTACTAGTGGGGGTCAAGTGCCATATCAAGCACCAGAATCGTTTCAAAACATAAAACCAAACCCCAAATGGGATGTGTATTCATTTGGAGTTATTTTGTTGGAGGTTTTTAGTGGGAGGGTTTTCTCGGACCGGGAGTTGGACCAGTGGTCTATTCCCGGTTCAGTTGAAGAGGAGAAAAACCGGGTTTTGAGAATGGTTGATGTGGCAATTAAGCATGAGATTGAAGGTAGAGAAAATGTGGTGCTCACGTGTTTTAAGTTGGGGTTAAATTGTGTTTCTCTTGTCCCACAAAAGAGACCGTCCATGAAAGAAGCACTACAAATCTTAGAGAAGATGCCTATGTTTGGTATTAATTAA

Protein sequence

>MS.gene92998.t1

MKLNTLLRVSSFLFLLLLQYSYALNSDGIFLLKFRYSILSDPLSVFETWNYDDATPCSWHGVACSELGSPDTPDFLRVTSLILPNNQLLGSIAEELGLIQNLHHIDLSDNFLNGSLPNSIFNSSQLQFLSLSNNKISGKLPELIGLSTNLQSLNLSDNAFAGSIPKNLTSLQNLTVVSLKSNYFSGEIPNVLNSVQILDLSSNLFNGSLPSSFNGENLQYLNLSYNKISGAIPKTFAKHIPENSTIDLSFNNLTGPIPESMALLNQKAESLSGNSDLCGKPLKNLCIIPSSISTPPENINNTSSSPAIAAIPRTINSTPGTNTNSTTSTSDSSQNGLKPTTIAAIVVGDIAGMGILALIILCVYQQRKKRYPKPNTVLQEKKVLETVVKQDQEAVKTQTHSLQCSPCCLTIKQQDETSEDPSSEESDRDINSIVVDNGKLPKEGTLVTVDGETKLDLETLLKASAYILGTSRASIVYKAVLQDGRVFAVRRIGECGVERMKEFENQVRAIAKVKHPNLVKIRGFCWGEDEKLVISDYVPNGSLSSIAYRRGGSSPMNLSLEVRLKIAKGVARGLAYLHEKKHVHGNVKPSSILLNSEMEPIISDFGIDLLLLNDNINHRGNGSFRQLVNQRTLQPQQDILTGSTPSPYGTMGPSSSTSGGQVPYQAPESFQNIKPNPKWDVYSFGVILLEVFSGRVFSDRELDQWSIPGSVEEEKNRVLRMVDVAIKHEIEGRENVVLTCFKLGLNCVSLVPQKRPSMKEALQILEKMPMFGIN