Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93115.t1 | XP_013470392.1 | 79.1 | 172 | 36 | 0 | 1 | 172 | 1 | 172 | 2.60E-65 | 258.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93115.t1 | Q9FMW4 | 52.4 | 103 | 49 | 0 | 63 | 165 | 58 | 160 | 2.0e-26 | 120.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93115.t1 | A0A072W2G8 | 79.1 | 172 | 36 | 0 | 1 | 172 | 1 | 172 | 1.9e-65 | 258.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061100 | MS.gene93115 | 0.801467 | 8.88E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93115.t1 | MTR_1g114750 | 88.372 | 172 | 20 | 0 | 1 | 172 | 1 | 172 | 5.34e-106 | 306 |
| MS.gene93115.t1 | MTR_1g114690 | 72.093 | 172 | 45 | 1 | 1 | 172 | 1 | 169 | 2.94e-86 | 256 |
| MS.gene93115.t1 | MTR_1g114690 | 72.093 | 172 | 45 | 1 | 1 | 172 | 1 | 169 | 7.35e-86 | 255 |
| MS.gene93115.t1 | MTR_1g114690 | 75.152 | 165 | 38 | 1 | 1 | 165 | 1 | 162 | 1.92e-85 | 255 |
| MS.gene93115.t1 | MTR_1g114690 | 70.225 | 178 | 50 | 1 | 1 | 178 | 1 | 175 | 8.88e-85 | 251 |
| MS.gene93115.t1 | MTR_1g115130 | 65.698 | 172 | 32 | 2 | 1 | 172 | 1 | 145 | 2.44e-72 | 220 |
| MS.gene93115.t1 | MTR_1g114640 | 51.765 | 170 | 76 | 4 | 1 | 167 | 1 | 167 | 8.94e-52 | 166 |
| MS.gene93115.t1 | MTR_1g114640 | 51.786 | 168 | 75 | 4 | 1 | 165 | 1 | 165 | 4.55e-50 | 164 |
| MS.gene93115.t1 | MTR_1g033750 | 50.292 | 171 | 68 | 3 | 5 | 165 | 4 | 167 | 1.70e-49 | 162 |
| MS.gene93115.t1 | MTR_8g100065 | 50.926 | 108 | 52 | 1 | 59 | 165 | 22 | 129 | 4.94e-31 | 112 |
| MS.gene93115.t1 | MTR_8g100065 | 50.926 | 108 | 52 | 1 | 59 | 165 | 44 | 151 | 6.92e-31 | 112 |
| MS.gene93115.t1 | MTR_8g100065 | 50.926 | 108 | 52 | 1 | 59 | 165 | 22 | 129 | 2.31e-30 | 112 |
| MS.gene93115.t1 | MTR_8g100065 | 50.926 | 108 | 52 | 1 | 59 | 165 | 44 | 151 | 3.86e-30 | 112 |
| MS.gene93115.t1 | MTR_6g077990 | 38.129 | 139 | 81 | 1 | 32 | 165 | 4 | 142 | 2.30e-28 | 105 |
| MS.gene93115.t1 | MTR_6g077990 | 38.129 | 139 | 81 | 1 | 32 | 165 | 4 | 142 | 9.11e-28 | 105 |
| MS.gene93115.t1 | MTR_6g077990 | 43.966 | 116 | 65 | 0 | 50 | 165 | 28 | 143 | 1.17e-27 | 105 |
| MS.gene93115.t1 | MTR_6g077990 | 49.462 | 93 | 47 | 0 | 73 | 165 | 8 | 100 | 6.06e-24 | 94.7 |
| MS.gene93115.t1 | MTR_7g083570 | 30.909 | 110 | 76 | 0 | 56 | 165 | 112 | 221 | 7.50e-17 | 78.6 |
| MS.gene93115.t1 | MTR_3g100750 | 32.407 | 108 | 72 | 1 | 65 | 172 | 103 | 209 | 9.86e-16 | 75.1 |
| MS.gene93115.t1 | MTR_2g076350 | 34.167 | 120 | 78 | 1 | 59 | 177 | 65 | 184 | 4.06e-15 | 72.8 |
| MS.gene93115.t1 | MTR_8g069110 | 29.412 | 119 | 83 | 1 | 59 | 177 | 109 | 226 | 1.31e-14 | 72.0 |
| MS.gene93115.t1 | MTR_1g114680 | 58.182 | 55 | 23 | 0 | 111 | 165 | 53 | 107 | 4.02e-13 | 66.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93115.t1 | AT5G23370 | 43.624 | 149 | 82 | 2 | 19 | 165 | 12 | 160 | 9.06e-38 | 132 |
| MS.gene93115.t1 | AT5G08350 | 44.526 | 137 | 75 | 1 | 30 | 165 | 23 | 159 | 5.11e-35 | 125 |
| MS.gene93115.t1 | AT5G23350 | 50.926 | 108 | 53 | 0 | 58 | 165 | 53 | 160 | 5.58e-35 | 125 |
| MS.gene93115.t1 | AT5G23360 | 45.985 | 137 | 66 | 3 | 30 | 165 | 23 | 152 | 5.28e-33 | 119 |
| MS.gene93115.t1 | AT5G13200 | 35.514 | 107 | 69 | 0 | 59 | 165 | 101 | 207 | 3.65e-19 | 83.6 |
| MS.gene93115.t1 | AT5G13200 | 32.773 | 119 | 80 | 0 | 59 | 177 | 101 | 219 | 4.42e-19 | 84.3 |
| MS.gene93115.t1 | AT4G01600 | 36.111 | 108 | 69 | 0 | 49 | 156 | 15 | 122 | 4.56e-19 | 82.8 |
| MS.gene93115.t1 | AT4G01600 | 36.111 | 108 | 69 | 0 | 49 | 156 | 54 | 161 | 1.07e-18 | 82.8 |
| MS.gene93115.t1 | AT1G28200 | 31.579 | 114 | 77 | 1 | 59 | 172 | 96 | 208 | 1.93e-16 | 77.0 |
| MS.gene93115.t1 | AT1G28200 | 31.579 | 114 | 77 | 1 | 59 | 172 | 96 | 208 | 1.93e-16 | 77.0 |
| MS.gene93115.t1 | AT4G01600 | 36.111 | 108 | 64 | 1 | 49 | 156 | 54 | 156 | 1.95e-15 | 73.6 |
| MS.gene93115.t1 | AT2G22475 | 29.268 | 123 | 86 | 1 | 59 | 181 | 133 | 254 | 9.23e-14 | 70.1 |
| MS.gene93115.t1 | AT2G22475 | 30.631 | 111 | 76 | 1 | 59 | 169 | 133 | 242 | 1.58e-13 | 68.6 |
Find 48 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTTCATGACATAGTTAT+TGG | 0.132924 | 1.1:+80581673 | MS.gene93115:CDS |
| GTCATTAACAGCCACTGCTT+GGG | 0.298535 | 1.1:-80582862 | None:intergenic |
| AAGGGTACTCACCATGTTCT+TGG | 0.303202 | 1.1:-80581956 | None:intergenic |
| AAAACACCTCATCATAGTTT+TGG | 0.309617 | 1.1:+80582745 | MS.gene93115:CDS |
| ACCACATCTGGTCCTCTATC+TGG | 0.375547 | 1.1:+80582232 | MS.gene93115:CDS |
| AGGGGCTCAAATTCTTCAAA+TGG | 0.390450 | 1.1:+80582126 | MS.gene93115:CDS |
| CAACATATTGTTGATAAAGT+TGG | 0.403763 | 1.1:+80582804 | MS.gene93115:CDS |
| TAAAGAGGACATTGAGCTTA+GGG | 0.407061 | 1.1:+80582107 | MS.gene93115:CDS |
| TGTCATTAACAGCCACTGCT+TGG | 0.415690 | 1.1:-80582863 | None:intergenic |
| TGGTAATGCAAGAGATCATT+TGG | 0.432489 | 1.1:+80582824 | MS.gene93115:CDS |
| AATGCGTAGGATCCGCTATA+AGG | 0.432925 | 1.1:+80582330 | MS.gene93115:CDS |
| TGTTATCTCTCCACCACATC+TGG | 0.435363 | 1.1:+80582220 | MS.gene93115:CDS |
| GTTTCTTAATGCAAAAGAAC+TGG | 0.436880 | 1.1:-80583209 | None:intergenic |
| ATGGATACCTTCTACCAGTA+TGG | 0.458340 | 1.1:-80582890 | None:intergenic |
| TATTAGCTCGGATGTAAACT+TGG | 0.464062 | 1.1:+80582777 | MS.gene93115:CDS |
| CCTCTTCATCTCCAATGAAA+AGG | 0.477437 | 1.1:+80582258 | MS.gene93115:CDS |
| ATAAAGAGGACATTGAGCTT+AGG | 0.479333 | 1.1:+80582106 | MS.gene93115:CDS |
| GACTCTTTGTGATAGACTAT+CGG | 0.494520 | 1.1:-80581934 | None:intergenic |
| GGGGCTCAAATTCTTCAAAT+GGG | 0.501460 | 1.1:+80582127 | MS.gene93115:CDS |
| GTTAATGACAAGGACCATAC+TGG | 0.503356 | 1.1:+80582876 | MS.gene93115:CDS |
| TATTGTTCTCTCACTGCAGA+AGG | 0.510226 | 1.1:-80582284 | None:intergenic |
| ACAAGGACCATACTGGTAGA+AGG | 0.513603 | 1.1:+80582883 | MS.gene93115:CDS |
| TGGCTTCATTGATATTAGCT+CGG | 0.520652 | 1.1:+80582765 | MS.gene93115:CDS |
| CTAACCAGGAAAAGCGCAGC+AGG | 0.526826 | 1.1:+80581907 | MS.gene93115:CDS |
| ATGAAGAGGAGACCAGATAG+AGG | 0.541014 | 1.1:-80582244 | None:intergenic |
| TTGATATTGACATTGATTAG+TGG | 0.546039 | 1.1:-80581764 | None:intergenic |
| TCATTAACAGCCACTGCTTG+GGG | 0.554689 | 1.1:-80582861 | None:intergenic |
| ACATATCTAAAACAATAAAG+AGG | 0.563370 | 1.1:+80582092 | MS.gene93115:CDS |
| ATAAAAGTCTTCAATCAGAA+AGG | 0.566655 | 1.1:+80582304 | MS.gene93115:CDS |
| CCAGGAAAAGCGCAGCAGGA+AGG | 0.579541 | 1.1:+80581911 | MS.gene93115:CDS |
| TGAAGATATGCTTTGAAACG+AGG | 0.584188 | 1.1:+80582710 | MS.gene93115:intron |
| AGGTAGAGCAAATTCTAACC+AGG | 0.586749 | 1.1:+80581893 | MS.gene93115:intron |
| TTAGTGTGACAGAAGGGGAA+AGG | 0.588982 | 1.1:+80582179 | MS.gene93115:CDS |
| AATTCTTCAAATGGGTGGAG+TGG | 0.590708 | 1.1:+80582135 | MS.gene93115:CDS |
| ATATGATCAAATTCAACAGT+CGG | 0.601025 | 1.1:+80581717 | MS.gene93115:CDS |
| ATCAGAAAGGTCAAATGCGT+AGG | 0.606952 | 1.1:+80582317 | MS.gene93115:CDS |
| GCTCAAATTCTTCAAATGGG+TGG | 0.612320 | 1.1:+80582130 | MS.gene93115:CDS |
| GAAGATATGCTTTGAAACGA+GGG | 0.618397 | 1.1:+80582711 | MS.gene93115:intron |
| AGATAGAGGACCAGATGTGG+TGG | 0.622202 | 1.1:-80582230 | None:intergenic |
| TCACAAAGAGTCCAAGAACA+TGG | 0.624901 | 1.1:+80581945 | MS.gene93115:CDS |
| ACCAGATAGAGGACCAGATG+TGG | 0.629958 | 1.1:-80582233 | None:intergenic |
| ATATGTTGCTGAGATGATTG+TGG | 0.633252 | 1.1:-80581698 | None:intergenic |
| ATGAAGCCAAAACTATGATG+AGG | 0.642921 | 1.1:-80582751 | None:intergenic |
| CTTTGAAACGAGGGACCTCG+TGG | 0.646477 | 1.1:+80582720 | MS.gene93115:CDS |
| AGCAGTGGCTGTTAATGACA+AGG | 0.648951 | 1.1:+80582866 | MS.gene93115:CDS |
| AAAGAGGACATTGAGCTTAG+GGG | 0.650107 | 1.1:+80582108 | MS.gene93115:CDS |
| TGCTTTGTAACCCCAAGCAG+TGG | 0.654078 | 1.1:+80582851 | MS.gene93115:CDS |
| GTTCACGACTTACCTTATAG+CGG | 0.664347 | 1.1:-80582342 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGAATTTTAAATTCAATGAA+GGG | + | chr1.1:80582930-80582949 | MS.gene93115:intron | 15.0% |
| !! | AATTAGATACAAAAGGAAAA+TGG | - | chr1.1:80582029-80582048 | None:intergenic | 20.0% |
| !! | ACATAACAAATATTGGATTA+GGG | - | chr1.1:80582409-80582428 | None:intergenic | 20.0% |
| !! | ATTATTGTTATGGTTGAAAA+AGG | + | chr1.1:80582955-80582974 | MS.gene93115:intron | 20.0% |
| !! | TAAAGAGAATTAGATACAAA+AGG | - | chr1.1:80582036-80582055 | None:intergenic | 20.0% |
| !! | TAATCGACACAATTATTTAA+AGG | - | chr1.1:80583139-80583158 | None:intergenic | 20.0% |
| !! | TACATAACAAATATTGGATT+AGG | - | chr1.1:80582410-80582429 | None:intergenic | 20.0% |
| !!! | ACATATCTAAAACAATAAAG+AGG | + | chr1.1:80582092-80582111 | MS.gene93115:CDS | 20.0% |
| !!! | ATAAAGTTATACTTTTGCAT+TGG | - | chr1.1:80581798-80581817 | None:intergenic | 20.0% |
| !!! | CTGAATTTTAAATTCAATGA+AGG | + | chr1.1:80582929-80582948 | MS.gene93115:intron | 20.0% |
| !!! | CTTCATTGAATTTAAAATTC+AGG | - | chr1.1:80582931-80582950 | None:intergenic | 20.0% |
| !!! | TGAAAGTTTTCTGATATTTT+AGG | - | chr1.1:80582555-80582574 | None:intergenic | 20.0% |
| ! | AACCTGTACATAACAAATAT+TGG | - | chr1.1:80582416-80582435 | None:intergenic | 25.0% |
| ! | ATAAAAGTCTTCAATCAGAA+AGG | + | chr1.1:80582304-80582323 | MS.gene93115:CDS | 25.0% |
| ! | ATATGATCAAATTCAACAGT+CGG | + | chr1.1:80581717-80581736 | MS.gene93115:CDS | 25.0% |
| ! | ATTCTTTATGTTATGCTCTA+AGG | - | chr1.1:80582633-80582652 | None:intergenic | 25.0% |
| ! | GCTTATTTAAACTAACTGAT+TGG | - | chr1.1:80583117-80583136 | None:intergenic | 25.0% |
| ! | TAAAAAAGTAAGAATCCTTC+AGG | - | chr1.1:80583234-80583253 | None:intergenic | 25.0% |
| ! | TGAAATTAGATTCTTGTAAC+AGG | - | chr1.1:80581824-80581843 | None:intergenic | 25.0% |
| ! | TTCTTTATGTTATGCTCTAA+GGG | - | chr1.1:80582632-80582651 | None:intergenic | 25.0% |
| !! | ATGTTTATGTACTTTTGTGT+TGG | - | chr1.1:80582493-80582512 | None:intergenic | 25.0% |
| !! | CAACATATTGTTGATAAAGT+TGG | + | chr1.1:80582804-80582823 | MS.gene93115:CDS | 25.0% |
| !! | TTGATATTGACATTGATTAG+TGG | - | chr1.1:80581767-80581786 | None:intergenic | 25.0% |
| !!! | AAGGATTCTTACTTTTTTAG+TGG | + | chr1.1:80583235-80583254 | MS.gene93115:CDS | 25.0% |
| !!! | ATCCAATATTTGTTATGTAC+AGG | + | chr1.1:80582411-80582430 | MS.gene93115:intron | 25.0% |
| !!! | TTCATCTAATCAAGTATTGA+TGG | + | chr1.1:80581840-80581859 | MS.gene93115:intron | 25.0% |
| AACTTTCAAATATATCGAGC+AGG | + | chr1.1:80582567-80582586 | MS.gene93115:intron | 30.0% | |
| ATAATGTGCTTCAATGTTTC+AGG | + | chr1.1:80581873-80581892 | MS.gene93115:intron | 30.0% | |
| ATGAAGGGAGATTATTGTTA+TGG | + | chr1.1:80582945-80582964 | MS.gene93115:intron | 30.0% | |
| CTTCTTCATGACATAGTTAT+TGG | + | chr1.1:80581673-80581692 | MS.gene93115:CDS | 30.0% | |
| GTGAAAAATTTCAGTGAGAT+CGG | + | chr1.1:80582063-80582082 | MS.gene93115:intron | 30.0% | |
| GTTTCTTAATGCAAAAGAAC+TGG | - | chr1.1:80583212-80583231 | None:intergenic | 30.0% | |
| TGAAAAATTTCAGTGAGATC+GGG | + | chr1.1:80582064-80582083 | MS.gene93115:intron | 30.0% | |
| TTGTTATGGTTGAAAAAGGA+TGG | + | chr1.1:80582959-80582978 | MS.gene93115:intron | 30.0% | |
| ! | AAAACACCTCATCATAGTTT+TGG | + | chr1.1:80582745-80582764 | MS.gene93115:CDS | 30.0% |
| ! | TTTTGCATTAAGAAACCTGA+AGG | + | chr1.1:80583216-80583235 | MS.gene93115:CDS | 30.0% |
| !! | TATACTTTTGCATTGGTGTT+TGG | - | chr1.1:80581791-80581810 | None:intergenic | 30.0% |
| !!! | AATTTTGACTTCTGGCTTAT+GGG | + | chr1.1:80582526-80582545 | MS.gene93115:intron | 30.0% |
| !!! | AGTATTTTAGTGTGACAGAA+GGG | + | chr1.1:80582173-80582192 | MS.gene93115:CDS | 30.0% |
| !!! | TGTGTCGATTATTTCTTTTG+TGG | + | chr1.1:80583148-80583167 | MS.gene93115:intron | 30.0% |
| ACACACTTGATCTTCTTCAA+TGG | - | chr1.1:80582445-80582464 | None:intergenic | 35.0% | |
| ATAAAGAGGACATTGAGCTT+AGG | + | chr1.1:80582106-80582125 | MS.gene93115:CDS | 35.0% | |
| ATATGTTGCTGAGATGATTG+TGG | - | chr1.1:80581701-80581720 | None:intergenic | 35.0% | |
| ATGAAGCCAAAACTATGATG+AGG | - | chr1.1:80582754-80582773 | None:intergenic | 35.0% | |
| CTTGATCTTCTTCAATGGAA+TGG | - | chr1.1:80582440-80582459 | None:intergenic | 35.0% | |
| GACTCTTTGTGATAGACTAT+CGG | - | chr1.1:80581937-80581956 | None:intergenic | 35.0% | |
| TAAAGAGGACATTGAGCTTA+GGG | + | chr1.1:80582107-80582126 | MS.gene93115:CDS | 35.0% | |
| TATGGTTGAAAAAGGATGGA+AGG | + | chr1.1:80582963-80582982 | MS.gene93115:intron | 35.0% | |
| TATTAGCTCGGATGTAAACT+TGG | + | chr1.1:80582777-80582796 | MS.gene93115:CDS | 35.0% | |
| TGGCTTCATTGATATTAGCT+CGG | + | chr1.1:80582765-80582784 | MS.gene93115:CDS | 35.0% | |
| ! | TGGTAATGCAAGAGATCATT+TGG | + | chr1.1:80582824-80582843 | MS.gene93115:CDS | 35.0% |
| !! | GAAGATATGCTTTGAAACGA+GGG | + | chr1.1:80582711-80582730 | MS.gene93115:intron | 35.0% |
| !! | TGAAGATATGCTTTGAAACG+AGG | + | chr1.1:80582710-80582729 | MS.gene93115:intron | 35.0% |
| !! | TTTATGTTATGCTCTAAGGG+TGG | - | chr1.1:80582629-80582648 | None:intergenic | 35.0% |
| !!! | CAATTTTGACTTCTGGCTTA+TGG | + | chr1.1:80582525-80582544 | MS.gene93115:intron | 35.0% |
| !!! | CAGTATTTTAGTGTGACAGA+AGG | + | chr1.1:80582172-80582191 | MS.gene93115:CDS | 35.0% |
| !!! | GTATTTTAGTGTGACAGAAG+GGG | + | chr1.1:80582174-80582193 | MS.gene93115:CDS | 35.0% |
| AAACCCAACCAAGTCTTACA+AGG | - | chr1.1:80581978-80581997 | None:intergenic | 40.0% | |
| AAAGAGGACATTGAGCTTAG+GGG | + | chr1.1:80582108-80582127 | MS.gene93115:CDS | 40.0% | |
| AACCCAACCAAGTCTTACAA+GGG | - | chr1.1:80581977-80581996 | None:intergenic | 40.0% | |
| AATGCAAAAGAACTGGCTGT+AGG | - | chr1.1:80583205-80583224 | None:intergenic | 40.0% | |
| AATTCTTCAAATGGGTGGAG+TGG | + | chr1.1:80582135-80582154 | MS.gene93115:CDS | 40.0% | |
| AGGGGCTCAAATTCTTCAAA+TGG | + | chr1.1:80582126-80582145 | MS.gene93115:CDS | 40.0% | |
| AGGTAGAGCAAATTCTAACC+AGG | + | chr1.1:80581893-80581912 | MS.gene93115:intron | 40.0% | |
| ATCAGAAAGGTCAAATGCGT+AGG | + | chr1.1:80582317-80582336 | MS.gene93115:CDS | 40.0% | |
| ATGGATACCTTCTACCAGTA+TGG | - | chr1.1:80582893-80582912 | None:intergenic | 40.0% | |
| CCTCTTCATCTCCAATGAAA+AGG | + | chr1.1:80582258-80582277 | MS.gene93115:CDS | 40.0% | |
| GCTCAAATTCTTCAAATGGG+TGG | + | chr1.1:80582130-80582149 | MS.gene93115:CDS | 40.0% | |
| GGGGCTCAAATTCTTCAAAT+GGG | + | chr1.1:80582127-80582146 | MS.gene93115:CDS | 40.0% | |
| GGTTGGGTTTCAAAGAGATA+TGG | + | chr1.1:80581988-80582007 | MS.gene93115:intron | 40.0% | |
| GTTAATGACAAGGACCATAC+TGG | + | chr1.1:80582876-80582895 | MS.gene93115:CDS | 40.0% | |
| GTTCACGACTTACCTTATAG+CGG | - | chr1.1:80582345-80582364 | None:intergenic | 40.0% | |
| TATTGTTCTCTCACTGCAGA+AGG | - | chr1.1:80582287-80582306 | None:intergenic | 40.0% | |
| TCACAAAGAGTCCAAGAACA+TGG | + | chr1.1:80581945-80581964 | MS.gene93115:CDS | 40.0% | |
| TGAAGAAGATCAAGTGTGTG+AGG | + | chr1.1:80582446-80582465 | MS.gene93115:intron | 40.0% | |
| TTAAAATTCAGGCCTCCCTA+TGG | - | chr1.1:80582920-80582939 | None:intergenic | 40.0% | |
| ! | AAGGTATCCATCCATCCATA+GGG | + | chr1.1:80582902-80582921 | MS.gene93115:intron | 40.0% |
| ! | CCTTTTCATTGGAGATGAAG+AGG | - | chr1.1:80582261-80582280 | None:intergenic | 40.0% |
| ! | TACCCTTGTAAGACTTGGTT+GGG | + | chr1.1:80581972-80581991 | MS.gene93115:intron | 40.0% |
| !!! | CAGTCGACAATTTTGACTTC+TGG | + | chr1.1:80582518-80582537 | MS.gene93115:intron | 40.0% |
| AAAGAACTGGCTGTAGGTGA+AGG | - | chr1.1:80583199-80583218 | None:intergenic | 45.0% | |
| AAGAACTGGCTGTAGGTGAA+GGG | - | chr1.1:80583198-80583217 | None:intergenic | 45.0% | |
| AATGCGTAGGATCCGCTATA+AGG | + | chr1.1:80582330-80582349 | MS.gene93115:CDS | 45.0% | |
| ACAAGGACCATACTGGTAGA+AGG | + | chr1.1:80582883-80582902 | MS.gene93115:CDS | 45.0% | |
| AGCAGTGGCTGTTAATGACA+AGG | + | chr1.1:80582866-80582885 | MS.gene93115:CDS | 45.0% | |
| ATGAAGAGGAGACCAGATAG+AGG | - | chr1.1:80582247-80582266 | None:intergenic | 45.0% | |
| GTCATTAACAGCCACTGCTT+GGG | - | chr1.1:80582865-80582884 | None:intergenic | 45.0% | |
| GTGAGTACCCTTGTAAGACT+TGG | + | chr1.1:80581967-80581986 | MS.gene93115:intron | 45.0% | |
| TCATTAACAGCCACTGCTTG+GGG | - | chr1.1:80582864-80582883 | None:intergenic | 45.0% | |
| TGTCATTAACAGCCACTGCT+TGG | - | chr1.1:80582866-80582885 | None:intergenic | 45.0% | |
| TGTTATCTCTCCACCACATC+TGG | + | chr1.1:80582220-80582239 | MS.gene93115:CDS | 45.0% | |
| TTAGTGTGACAGAAGGGGAA+AGG | + | chr1.1:80582179-80582198 | MS.gene93115:CDS | 45.0% | |
| ! | GCAGAAGGCAACCTTTTCAT+TGG | - | chr1.1:80582272-80582291 | None:intergenic | 45.0% |
| ! | GTACCCTTGTAAGACTTGGT+TGG | + | chr1.1:80581971-80581990 | MS.gene93115:intron | 45.0% |
| !! | AAGGGTACTCACCATGTTCT+TGG | - | chr1.1:80581959-80581978 | None:intergenic | 45.0% |
| !! | GAAGGTATCCATCCATCCAT+AGG | + | chr1.1:80582901-80582920 | MS.gene93115:intron | 45.0% |
| !!! | AATTTTATTAAATATTTGAA+TGG | - | chr1.1:80583063-80583082 | None:intergenic | 5.0% |
| AATTCAGGCCTCCCTATGGA+TGG | - | chr1.1:80582916-80582935 | None:intergenic | 50.0% | |
| ACCACATCTGGTCCTCTATC+TGG | + | chr1.1:80582232-80582251 | MS.gene93115:CDS | 50.0% | |
| ACCAGATAGAGGACCAGATG+TGG | - | chr1.1:80582236-80582255 | None:intergenic | 50.0% | |
| AGATAGAGGACCAGATGTGG+TGG | - | chr1.1:80582233-80582252 | None:intergenic | 50.0% | |
| GTATCCATCCATCCATAGGG+AGG | + | chr1.1:80582905-80582924 | MS.gene93115:intron | 50.0% | |
| TGCTTTGTAACCCCAAGCAG+TGG | + | chr1.1:80582851-80582870 | MS.gene93115:CDS | 50.0% | |
| !! | GATGAGGTGTTTTGTCCACG+AGG | - | chr1.1:80582738-80582757 | None:intergenic | 50.0% |
| ! | CTAACCAGGAAAAGCGCAGC+AGG | + | chr1.1:80581907-80581926 | MS.gene93115:CDS | 55.0% |
| !! | CTTTGAAACGAGGGACCTCG+TGG | + | chr1.1:80582720-80582739 | MS.gene93115:CDS | 55.0% |
| CAGGCCTCCCTATGGATGGA+TGG | - | chr1.1:80582912-80582931 | None:intergenic | 60.0% | |
| ! | CCAGGAAAAGCGCAGCAGGA+AGG | + | chr1.1:80581911-80581930 | MS.gene93115:CDS | 60.0% |
| ! | CCTTCCTGCTGCGCTTTTCC+TGG | - | chr1.1:80581914-80581933 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.1 | gene | 80581661 | 80583300 | 80581661 | ID=MS.gene93115 |
| chr1.1 | mRNA | 80581661 | 80583300 | 80581661 | ID=MS.gene93115.t1;Parent=MS.gene93115 |
| chr1.1 | exon | 80581661 | 80581805 | 80581661 | ID=MS.gene93115.t1.exon1;Parent=MS.gene93115.t1 |
| chr1.1 | CDS | 80581661 | 80581805 | 80581661 | ID=cds.MS.gene93115.t1;Parent=MS.gene93115.t1 |
| chr1.1 | exon | 80581895 | 80581966 | 80581895 | ID=MS.gene93115.t1.exon2;Parent=MS.gene93115.t1 |
| chr1.1 | CDS | 80581895 | 80581966 | 80581895 | ID=cds.MS.gene93115.t1;Parent=MS.gene93115.t1 |
| chr1.1 | exon | 80582077 | 80582351 | 80582077 | ID=MS.gene93115.t1.exon3;Parent=MS.gene93115.t1 |
| chr1.1 | CDS | 80582077 | 80582351 | 80582077 | ID=cds.MS.gene93115.t1;Parent=MS.gene93115.t1 |
| chr1.1 | exon | 80582715 | 80582904 | 80582715 | ID=MS.gene93115.t1.exon4;Parent=MS.gene93115.t1 |
| chr1.1 | CDS | 80582715 | 80582904 | 80582715 | ID=cds.MS.gene93115.t1;Parent=MS.gene93115.t1 |
| chr1.1 | exon | 80583209 | 80583300 | 80583209 | ID=MS.gene93115.t1.exon5;Parent=MS.gene93115.t1 |
| chr1.1 | CDS | 80583209 | 80583300 | 80583209 | ID=cds.MS.gene93115.t1;Parent=MS.gene93115.t1 |
| Gene Sequence |
| Protein sequence |
