Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93235.t1 | AFK33519.1 | 94.4 | 232 | 13 | 0 | 1 | 232 | 1 | 232 | 6.10E-114 | 420.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93235.t1 | I3RZS7 | 94.4 | 232 | 13 | 0 | 1 | 232 | 1 | 232 | 4.4e-114 | 420.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052176 | MS.gene93235 | 0.807734 | 4.37E-50 | -1.69E-46 |
MS.gene054930 | MS.gene93235 | 0.816433 | 5.54E-52 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93235.t1 | MTR_7g045270 | 80.734 | 109 | 18 | 1 | 1 | 106 | 1 | 109 | 1.54e-59 | 183 |
MS.gene93235.t1 | MTR_4g036465 | 30.660 | 212 | 116 | 4 | 46 | 229 | 66 | 274 | 7.34e-23 | 94.0 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene93235.t1 | AT4G25170 | 27.232 | 224 | 119 | 5 | 47 | 226 | 118 | 341 | 2.41e-22 | 94.0 |
MS.gene93235.t1 | AT4G25170 | 25.523 | 239 | 119 | 5 | 47 | 226 | 118 | 356 | 3.55e-20 | 88.2 |
MS.gene93235.t1 | AT5G61490 | 29.897 | 194 | 114 | 5 | 47 | 226 | 70 | 255 | 1.42e-16 | 76.6 |
Find 36 sgRNAs with CRISPR-Local
Find 109 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAGCCATGATTACAATTAAA+AGG | 0.291956 | 7.4:+57648637 | None:intergenic |
CTTCTGGAGTTACCTGATTC+AGG | 0.299425 | 7.4:-57649215 | MS.gene93235:intron |
TGTGTTGCAGCAAAGGCTTC+TGG | 0.299635 | 7.4:-57649231 | MS.gene93235:CDS |
TCTCTTTGCTCTGAACTCTT+AGG | 0.301873 | 7.4:+57648843 | None:intergenic |
TTATCTTCTTGTTGCTGTAA+TGG | 0.335551 | 7.4:-57650606 | MS.gene93235:CDS |
ATCATCTGATGAAGCCATTT+GGG | 0.369589 | 7.4:-57649270 | MS.gene93235:CDS |
GCAAGCTGACCCTGCTGTTA+AGG | 0.376332 | 7.4:-57649709 | MS.gene93235:intron |
TGCAATCTCAAGGATATAAT+AGG | 0.380708 | 7.4:-57649755 | MS.gene93235:CDS |
TATCATCTGATGAAGCCATT+TGG | 0.380798 | 7.4:-57649271 | MS.gene93235:CDS |
ACTCTTATGATTATGATTCA+AGG | 0.400681 | 7.4:-57649782 | MS.gene93235:CDS |
GTAAAATACAGACCTGAATC+AGG | 0.421970 | 7.4:+57649203 | None:intergenic |
TCAGCATAGAAATCTTAAAC+TGG | 0.423620 | 7.4:-57648818 | MS.gene93235:CDS |
ATTGCATCCTCAACTTCCCT+TGG | 0.457281 | 7.4:+57650510 | None:intergenic |
CCTGGGATTGAAAATGCAAC+AGG | 0.471072 | 7.4:-57648717 | MS.gene93235:CDS |
AATGATTTATTCCAGTCCCC+TGG | 0.471686 | 7.4:-57648735 | MS.gene93235:CDS |
ATTACAGCAACAAGAAGATA+AGG | 0.483282 | 7.4:+57650608 | None:intergenic |
AAGAGAGAAACCTTAACAGC+AGG | 0.491696 | 7.4:+57649699 | None:intergenic |
TATCATGAAAGGAAAAGTCT+TGG | 0.499321 | 7.4:-57648787 | MS.gene93235:CDS |
GATGGAACAGTCTCAAATAC+AGG | 0.516407 | 7.4:+57650534 | None:intergenic |
TAAGAAATGTGTTGCAGCAA+AGG | 0.518969 | 7.4:-57649238 | MS.gene93235:CDS |
TCCTCAACTTCCCTTGGAGA+TGG | 0.522681 | 7.4:+57650516 | None:intergenic |
TCTTATGACAGCATCCCAAA+TGG | 0.524517 | 7.4:+57649256 | None:intergenic |
AGAAAACAAGAGATAACATC+AGG | 0.536095 | 7.4:-57650573 | MS.gene93235:CDS |
ATGATTTATTCCAGTCCCCT+GGG | 0.537176 | 7.4:-57648734 | MS.gene93235:CDS |
TGGATATTTCATATCATGAA+AGG | 0.540393 | 7.4:-57648798 | MS.gene93235:CDS |
TTGAGACTGTTCCATCTCCA+AGG | 0.555002 | 7.4:-57650527 | MS.gene93235:CDS |
TGAGACTGTTCCATCTCCAA+GGG | 0.557974 | 7.4:-57650526 | MS.gene93235:CDS |
TCAAGGATTGTGCAATCTCA+AGG | 0.559981 | 7.4:-57649765 | MS.gene93235:CDS |
CATCATTCATCAATGGGAGG+TGG | 0.560723 | 7.4:-57650681 | None:intergenic |
TACAATTAAAAGGATAACAA+TGG | 0.569576 | 7.4:+57648647 | None:intergenic |
TCCATCTCCAAGGGAAGTTG+AGG | 0.581988 | 7.4:-57650517 | MS.gene93235:CDS |
GATCTGTTGATCTATGATTG+TGG | 0.615202 | 7.4:+57649809 | None:intergenic |
AGAGAGAAACCTTAACAGCA+GGG | 0.629886 | 7.4:+57649700 | None:intergenic |
TTATTGGCGTTACTCAACTG+AGG | 0.661229 | 7.4:+57650633 | None:intergenic |
AAACAAGAGATAACATCAGG+TGG | 0.661795 | 7.4:-57650570 | MS.gene93235:CDS |
AATCATCATTCATCAATGGG+AGG | 0.669157 | 7.4:-57650684 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTAAGAAATATAATTAATTT+AGG | - | chr7.4:57648978-57648997 | MS.gene93235:intron | 10.0% |
!! | ACATAATTTAGTGTAATTAT+GGG | - | chr7.4:57650259-57650278 | MS.gene93235:intron | 15.0% |
!! | TCGTAAAATGAAATATATAA+TGG | - | chr7.4:57650345-57650364 | MS.gene93235:intron | 15.0% |
!!! | GTAGTTTTTTTTTTTTTTGA+GGG | - | chr7.4:57649205-57649224 | MS.gene93235:intron | 15.0% |
!!! | TGATTTTATCAAATTATTAG+CGG | + | chr7.4:57650240-57650259 | None:intergenic | 15.0% |
!!! | TGTAGTTTTTTTTTTTTTTG+AGG | - | chr7.4:57649204-57649223 | MS.gene93235:intron | 15.0% |
!! | CACATAATTTAGTGTAATTA+TGG | - | chr7.4:57650258-57650277 | MS.gene93235:intron | 20.0% |
!! | TACAATTAAAAGGATAACAA+TGG | + | chr7.4:57650639-57650658 | None:intergenic | 20.0% |
!! | TTCAAAACACAATCAATAAT+TGG | - | chr7.4:57649649-57649668 | MS.gene93235:intron | 20.0% |
!!! | ACTCAATATAAAAGATTTTG+AGG | + | chr7.4:57649278-57649297 | None:intergenic | 20.0% |
!!! | ACTCTTTTGAGATAAATTAA+AGG | - | chr7.4:57648863-57648882 | MS.gene93235:intron | 20.0% |
!!! | TATCCTTTTAATTGTAATCA+TGG | - | chr7.4:57650643-57650662 | MS.gene93235:CDS | 20.0% |
!!! | TTAGATGAAATTGTTTGTTT+TGG | - | chr7.4:57648907-57648926 | MS.gene93235:intron | 20.0% |
!!! | TTCTTAGTGAATATTTCTTT+TGG | + | chr7.4:57650159-57650178 | None:intergenic | 20.0% |
! | AAATATTCACTAAGAAGAGA+AGG | - | chr7.4:57650163-57650182 | MS.gene93235:intron | 25.0% |
! | AATTTAGTGTAATTATGGGT+TGG | - | chr7.4:57650263-57650282 | MS.gene93235:intron | 25.0% |
! | ACTCTTATGATTATGATTCA+AGG | - | chr7.4:57649501-57649520 | MS.gene93235:intron | 25.0% |
! | AGAAGGAATGATATAAAACA+CGG | - | chr7.4:57650180-57650199 | MS.gene93235:intron | 25.0% |
! | AGATAAATTAAAGGTCTTCT+TGG | - | chr7.4:57648872-57648891 | MS.gene93235:intron | 25.0% |
! | GATAAATTAAAGGTCTTCTT+GGG | - | chr7.4:57648873-57648892 | MS.gene93235:intron | 25.0% |
! | TAGCCATGATTACAATTAAA+AGG | + | chr7.4:57650649-57650668 | None:intergenic | 25.0% |
! | TGGATATTTCATATCATGAA+AGG | - | chr7.4:57650485-57650504 | MS.gene93235:intron | 25.0% |
!! | ATATTTCATTTTACGAAGCA+TGG | + | chr7.4:57650341-57650360 | None:intergenic | 25.0% |
!! | CTTTTTACAAGTTACTACAA+AGG | + | chr7.4:57649356-57649375 | None:intergenic | 25.0% |
!! | GAAAAATAAAAGGGACTTTT+GGG | - | chr7.4:57649050-57649069 | MS.gene93235:intron | 25.0% |
!! | GGAAATAAAGCTGAATATTT+TGG | + | chr7.4:57649335-57649354 | None:intergenic | 25.0% |
!! | TCTTTTATATTGAGTCCTAA+TGG | - | chr7.4:57649283-57649302 | MS.gene93235:CDS | 25.0% |
!! | TTAGTGAATATTTCTTTTGG+TGG | + | chr7.4:57650156-57650175 | None:intergenic | 25.0% |
!!! | AAAAGTTTTTAAGAATCGTG+TGG | - | chr7.4:57649371-57649390 | MS.gene93235:intron | 25.0% |
!!! | ACAAGAAGATAAGGTTTTAT+TGG | + | chr7.4:57648669-57648688 | None:intergenic | 25.0% |
!!! | GTAATTTTTTCGTGACAATA+TGG | - | chr7.4:57649119-57649138 | MS.gene93235:intron | 25.0% |
!!! | TATTTTACTAACTTGTGGTA+TGG | - | chr7.4:57650095-57650114 | MS.gene93235:intron | 25.0% |
AGAAAACAAGAGATAACATC+AGG | - | chr7.4:57648710-57648729 | MS.gene93235:CDS | 30.0% | |
ATTACAGCAACAAGAAGATA+AGG | + | chr7.4:57648678-57648697 | None:intergenic | 30.0% | |
CACAGTTAGATGAAAAAGTT+AGG | - | chr7.4:57650597-57650616 | MS.gene93235:CDS | 30.0% | |
TATCAAATTATTAGCGGTGT+TGG | + | chr7.4:57650234-57650253 | None:intergenic | 30.0% | |
TATCATGAAAGGAAAAGTCT+TGG | - | chr7.4:57650496-57650515 | MS.gene93235:CDS | 30.0% | |
TCAGCATAGAAATCTTAAAC+TGG | - | chr7.4:57650465-57650484 | MS.gene93235:intron | 30.0% | |
TCTGACACAACAATTTGAAA+AGG | + | chr7.4:57649435-57649454 | None:intergenic | 30.0% | |
TGCAATCTCAAGGATATAAT+AGG | - | chr7.4:57649528-57649547 | MS.gene93235:intron | 30.0% | |
TGGAAGAAAACAATGTTAGA+TGG | + | chr7.4:57650401-57650420 | None:intergenic | 30.0% | |
TGTTGCTGCGAAAAATAAAA+GGG | - | chr7.4:57649041-57649060 | MS.gene93235:intron | 30.0% | |
TTATCTTCTTGTTGCTGTAA+TGG | - | chr7.4:57648677-57648696 | MS.gene93235:CDS | 30.0% | |
TTGTTGCTGCGAAAAATAAA+AGG | - | chr7.4:57649040-57649059 | MS.gene93235:intron | 30.0% | |
! | CGAAAAATAAAAGGGACTTT+TGG | - | chr7.4:57649049-57649068 | MS.gene93235:intron | 30.0% |
! | GTCTGTATTTTACTAACTTG+TGG | - | chr7.4:57650090-57650109 | MS.gene93235:intron | 30.0% |
!! | TTATTTTTCGCAGCAACAAA+TGG | + | chr7.4:57649039-57649058 | None:intergenic | 30.0% |
AAACAAGAGATAACATCAGG+TGG | - | chr7.4:57648713-57648732 | MS.gene93235:CDS | 35.0% | |
ATCATCTGATGAAGCCATTT+GGG | - | chr7.4:57650013-57650032 | MS.gene93235:intron | 35.0% | |
ATGTTATGAGTACGACCATT+AGG | + | chr7.4:57649301-57649320 | None:intergenic | 35.0% | |
CGTACATTGGATAAGAAAGT+GGG | - | chr7.4:57649696-57649715 | MS.gene93235:intron | 35.0% | |
CTTTATATTGCTGCGAAATG+CGG | - | chr7.4:57649167-57649186 | MS.gene93235:intron | 35.0% | |
GATCTGTTGATCTATGATTG+TGG | + | chr7.4:57649477-57649496 | None:intergenic | 35.0% | |
GCATTTCGCAGCAATATAAA+GGG | + | chr7.4:57649168-57649187 | None:intergenic | 35.0% | |
GTAAAATACAGACCTGAATC+AGG | + | chr7.4:57650083-57650102 | None:intergenic | 35.0% | |
TAAGAAATGTGTTGCAGCAA+AGG | - | chr7.4:57650045-57650064 | MS.gene93235:intron | 35.0% | |
TATCATCTGATGAAGCCATT+TGG | - | chr7.4:57650012-57650031 | MS.gene93235:intron | 35.0% | |
TCGTACATTGGATAAGAAAG+TGG | - | chr7.4:57649695-57649714 | MS.gene93235:intron | 35.0% | |
TGTCAACGTAGTTGAAATTG+CGG | - | chr7.4:57649232-57649251 | MS.gene93235:CDS | 35.0% | |
TTAATCCTTAAAGCCGTGTT+GGG | + | chr7.4:57649860-57649879 | None:intergenic | 35.0% | |
TTGAGTTATACGTCGTACAT+TGG | - | chr7.4:57649683-57649702 | MS.gene93235:intron | 35.0% | |
! | AACTCATTGCGTTAAGGTTT+TGG | - | chr7.4:57649751-57649770 | MS.gene93235:CDS | 35.0% |
! | TGTGTTGATGAAATGTGTCT+CGG | - | chr7.4:57649959-57649978 | MS.gene93235:intron | 35.0% |
! | TTAGGTCTTTTACCTTTAGC+TGG | + | chr7.4:57650425-57650444 | None:intergenic | 35.0% |
AAGAGAGAAACCTTAACAGC+AGG | + | chr7.4:57649587-57649606 | None:intergenic | 40.0% | |
AATGATTTATTCCAGTCCCC+TGG | - | chr7.4:57650548-57650567 | MS.gene93235:CDS | 40.0% | |
AGAGAGAAACCTTAACAGCA+GGG | + | chr7.4:57649586-57649605 | None:intergenic | 40.0% | |
ATGATTTATTCCAGTCCCCT+GGG | - | chr7.4:57650549-57650568 | MS.gene93235:CDS | 40.0% | |
CACATGAACTCATTGCGTTA+AGG | - | chr7.4:57649745-57649764 | MS.gene93235:CDS | 40.0% | |
CGCATTTCGCAGCAATATAA+AGG | + | chr7.4:57649169-57649188 | None:intergenic | 40.0% | |
CTTAATCCTTAAAGCCGTGT+TGG | + | chr7.4:57649861-57649880 | None:intergenic | 40.0% | |
GATGGAACAGTCTCAAATAC+AGG | + | chr7.4:57648752-57648771 | None:intergenic | 40.0% | |
TCAAGGATTGTGCAATCTCA+AGG | - | chr7.4:57649518-57649537 | MS.gene93235:intron | 40.0% | |
TCTTATGACAGCATCCCAAA+TGG | + | chr7.4:57650030-57650049 | None:intergenic | 40.0% | |
TTATTGGCGTTACTCAACTG+AGG | + | chr7.4:57648653-57648672 | None:intergenic | 40.0% | |
TTGCGGTTATGTTGTCATTG+CGG | - | chr7.4:57649249-57649268 | MS.gene93235:CDS | 40.0% | |
! | CTGTTGCATTTTCAATCCCA+GGG | + | chr7.4:57650568-57650587 | None:intergenic | 40.0% |
! | GATTAAGCGTGTCTTGTTGT+TGG | + | chr7.4:57650308-57650327 | None:intergenic | 40.0% |
! | GTCTTTTACCTTTAGCTGGA+TGG | + | chr7.4:57650421-57650440 | None:intergenic | 40.0% |
! | GTTTTCTTCCATCCAGCTAA+AGG | - | chr7.4:57650410-57650429 | MS.gene93235:intron | 40.0% |
! | TCTCTTTGCTCTGAACTCTT+AGG | + | chr7.4:57650443-57650462 | None:intergenic | 40.0% |
! | TGTTGCATTTTCAATCCCAG+GGG | + | chr7.4:57650567-57650586 | None:intergenic | 40.0% |
!! | GTGTAATTATGGGTTGGTCT+CGG | - | chr7.4:57650269-57650288 | MS.gene93235:intron | 40.0% |
AACAAGACACGCTTAATCCG+AGG | - | chr7.4:57650310-57650329 | MS.gene93235:intron | 45.0% | |
ATTGCATCCTCAACTTCCCT+TGG | + | chr7.4:57648776-57648795 | None:intergenic | 45.0% | |
CCTGGGATTGAAAATGCAAC+AGG | - | chr7.4:57650566-57650585 | MS.gene93235:CDS | 45.0% | |
TGAGACTGTTCCATCTCCAA+GGG | - | chr7.4:57648757-57648776 | MS.gene93235:CDS | 45.0% | |
TTGAGACTGTTCCATCTCCA+AGG | - | chr7.4:57648756-57648775 | MS.gene93235:CDS | 45.0% | |
! | CCTGTTGCATTTTCAATCCC+AGG | + | chr7.4:57650569-57650588 | None:intergenic | 45.0% |
!! | CTTCTGGAGTTACCTGATTC+AGG | - | chr7.4:57650068-57650087 | MS.gene93235:intron | 45.0% |
AAAGCCGTGTTGGGTCATGA+GGG | + | chr7.4:57649851-57649870 | None:intergenic | 50.0% | |
CATGACCCAACACGGCTTTA+AGG | - | chr7.4:57649852-57649871 | MS.gene93235:intron | 50.0% | |
TAAAGCCGTGTTGGGTCATG+AGG | + | chr7.4:57649852-57649871 | None:intergenic | 50.0% | |
TACGAAGCATGGACACTCCT+CGG | + | chr7.4:57650330-57650349 | None:intergenic | 50.0% | |
TCCATCTCCAAGGGAAGTTG+AGG | - | chr7.4:57648766-57648785 | MS.gene93235:CDS | 50.0% | |
TCCTCAACTTCCCTTGGAGA+TGG | + | chr7.4:57648770-57648789 | None:intergenic | 50.0% | |
TCTGCCAGTCTGCTTTGATG+CGG | - | chr7.4:57649810-57649829 | MS.gene93235:CDS | 50.0% | |
TGTGTTGCAGCAAAGGCTTC+TGG | - | chr7.4:57650052-57650071 | MS.gene93235:intron | 50.0% | |
! | CATTTTCAATCCCAGGGGAC+TGG | + | chr7.4:57650562-57650581 | None:intergenic | 50.0% |
!! | TTATGGGTTGGTCTCGGACA+CGG | - | chr7.4:57650275-57650294 | MS.gene93235:intron | 50.0% |
AAGCCGTGTTGGGTCATGAG+GGG | + | chr7.4:57649850-57649869 | None:intergenic | 55.0% | |
ACTCCCCTCATGACCCAACA+CGG | - | chr7.4:57649844-57649863 | MS.gene93235:intron | 55.0% | |
CTGCCAGTCTGCTTTGATGC+GGG | - | chr7.4:57649811-57649830 | MS.gene93235:CDS | 55.0% | |
GCAAGCTGACCCTGCTGTTA+AGG | - | chr7.4:57649574-57649593 | MS.gene93235:intron | 55.0% | |
CCACCCGCATCAAAGCAGAC+TGG | + | chr7.4:57649817-57649836 | None:intergenic | 60.0% | |
CCAGTCTGCTTTGATGCGGG+TGG | - | chr7.4:57649814-57649833 | MS.gene93235:CDS | 60.0% | |
TGGGTCATGAGGGGAGTCCA+GGG | + | chr7.4:57649841-57649860 | None:intergenic | 60.0% | |
TTGGGTCATGAGGGGAGTCC+AGG | + | chr7.4:57649842-57649861 | None:intergenic | 60.0% | |
GCTTTGATGCGGGTGGTCCC+TGG | - | chr7.4:57649821-57649840 | MS.gene93235:CDS | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 57648614 | 57650691 | 57648614 | ID=MS.gene93235 |
chr7.4 | mRNA | 57648614 | 57650691 | 57648614 | ID=MS.gene93235.t1;Parent=MS.gene93235 |
chr7.4 | exon | 57650495 | 57650691 | 57650495 | ID=MS.gene93235.t1.exon1;Parent=MS.gene93235.t1 |
chr7.4 | CDS | 57650495 | 57650691 | 57650495 | ID=cds.MS.gene93235.t1;Parent=MS.gene93235.t1 |
chr7.4 | exon | 57649710 | 57649851 | 57649710 | ID=MS.gene93235.t1.exon2;Parent=MS.gene93235.t1 |
chr7.4 | CDS | 57649710 | 57649851 | 57649710 | ID=cds.MS.gene93235.t1;Parent=MS.gene93235.t1 |
chr7.4 | exon | 57649216 | 57649309 | 57649216 | ID=MS.gene93235.t1.exon3;Parent=MS.gene93235.t1 |
chr7.4 | CDS | 57649216 | 57649309 | 57649216 | ID=cds.MS.gene93235.t1;Parent=MS.gene93235.t1 |
chr7.4 | exon | 57648614 | 57648879 | 57648614 | ID=MS.gene93235.t1.exon4;Parent=MS.gene93235.t1 |
chr7.4 | CDS | 57648614 | 57648879 | 57648614 | ID=cds.MS.gene93235.t1;Parent=MS.gene93235.t1 |
Gene Sequence |
Protein sequence |