AlfalfaGEDB | MS.gene93246

M. sativa cultivar XinJiangDaYe / MS.gene93246

KEGG: -
GO: GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0097159 GO:0110165 GO:1901363
PFAM: PF03110.17

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93246.t1	XP_013448322.1	84.5	317	46	1	1	317	1	314	2.00E-144	521.9

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93246.t1	Q01JD1	55.9	161	48	4	149	286	105	265	4.4e-39	163.3

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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93246.t1	A0A072TXZ6	84.5	317	46	1	1	317	1	314	1.5e-144	521.9

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TFs/TRs:

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Gene ID	Type	Classification
MS.gene93246.t1	TF	SBP

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene050584	MS.gene93246	0.804244	2.37E-49	-1.69E-46
MS.gene051789	MS.gene93246	0.82005	8.42E-53	-1.69E-46
MS.gene05456	MS.gene93246	0.812693	3.73E-51	-1.69E-46
MS.gene059006	MS.gene93246	0.836274	1.03E-56	-1.69E-46

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PPI:

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93246.t1	MTR_7g444860	95.268	317	12	3	1	317	1	314	0.0	619
MS.gene93246.t1	MTR_3g085180	53.957	139	60	2	98	236	115	249	2.40e-41	149
MS.gene93246.t1	MTR_4g088555	72.840	81	22	0	152	232	63	143	1.38e-36	128
MS.gene93246.t1	MTR_1g053715	53.846	130	57	1	104	230	23	152	2.15e-36	134
MS.gene93246.t1	MTR_7g092930	51.145	131	61	1	104	231	17	147	5.14e-36	132
MS.gene93246.t1	MTR_2g014200	67.778	90	28	1	138	227	51	139	4.43e-35	124
MS.gene93246.t1	MTR_2g078770	58.182	110	45	1	129	238	36	144	9.35e-35	124
MS.gene93246.t1	MTR_8g463140	68.235	85	27	0	152	236	65	149	9.86e-35	125
MS.gene93246.t1	MTR_5g046670	51.111	135	60	2	98	229	190	321	2.13e-34	131
MS.gene93246.t1	MTR_8g005960	67.857	84	27	0	145	228	180	263	3.30e-34	127

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene93246.t1	AT1G27370	54.839	124	55	1	103	225	126	249	5.84e-38	138
MS.gene93246.t1	AT1G27370	54.839	124	55	1	103	225	126	249	1.97e-37	137
MS.gene93246.t1	AT1G27370	54.839	124	55	1	103	225	126	249	1.97e-37	137
MS.gene93246.t1	AT1G27370	54.839	124	55	1	103	225	126	249	1.97e-37	137
MS.gene93246.t1	AT1G27370	54.839	124	55	1	103	225	126	249	1.97e-37	137
MS.gene93246.t1	AT1G27370	54.839	124	55	1	103	225	126	249	1.97e-37	137
MS.gene93246.t1	AT1G27370	54.839	124	55	1	103	225	126	249	1.97e-37	137
MS.gene93246.t1	AT1G27360	55.285	123	55	0	103	225	126	248	3.94e-37	137
MS.gene93246.t1	AT1G27360	55.285	123	55	0	103	225	126	248	3.94e-37	137
MS.gene93246.t1	AT1G27360	55.285	123	55	0	103	225	126	248	3.94e-37	137

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Find 103 sgRNAs with CRISPR-Local

Find 249 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTGTGGTGTTGGGTT+TGG	0.400118	7.4:+57990541	MS.gene93246:CDS
AAACAAACATGGACTTTGGA+GGG	0.586271	7.4:+57989991	None:intergenic
AAACATGTGAGGTGTGGATC+AGG	0.445259	7.4:-57990287	None:intergenic
AAACCCAACACCACAACTTT+TGG	0.295801	7.4:-57990539	None:intergenic
AAAGGAGGATATTGTGGTGG+TGG	0.543034	7.4:+57990383	MS.gene93246:CDS
AAAGGGAAAGGAGGATATTG+TGG	0.551862	7.4:+57990377	MS.gene93246:CDS
AACCATCACTAATGTGTCTG+CGG	0.630280	7.4:-57993955	None:intergenic
AACTTCAAACATGTGAGGTG+TGG	0.592893	7.4:-57990293	None:intergenic
AAGAAGTTGTAGAAGGAGAC+TGG	0.506657	7.4:+57992685	MS.gene93246:CDS
AAGACGGCGGCGGTGGTGGG+TGG	0.396016	7.4:+57990410	MS.gene93246:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AACGTCCATTTATTTACGTT+TGG	+	chr7.4:57991184-57991203	MS.gene93246:intron	30.0%
AAGGACTATAGTTACTCTAT+CGG	-	chr7.4:57992996-57993015	None:intergenic	30.0%
AATATGAAAAATGTGGTGGT+GGG	+	chr7.4:57992615-57992634	MS.gene93246:intron	30.0%
AGTACTATAGATGTGGATAT+TGG	-	chr7.4:57992164-57992183	None:intergenic	30.0%
CAAACATCAGATACATTTGT+TGG	-	chr7.4:57991247-57991266	None:intergenic	30.0%
CAAATGTATCTGATGTTTGT+TGG	+	chr7.4:57991248-57991267	MS.gene93246:intron	30.0%
CAACACCAAACGTAAATAAA+TGG	-	chr7.4:57991192-57991211	None:intergenic	30.0%
CAAGCATAGATCAAATGAAT+TGG	-	chr7.4:57991006-57991025	None:intergenic	30.0%
CATAGTAGACAATATGTTGA+TGG	+	chr7.4:57993677-57993696	MS.gene93246:intron	30.0%
CATATGTTGTGGGAAATAAT+TGG	-	chr7.4:57993932-57993951	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7.4	gene	57989999	57993969	57989999	ID=MS.gene93246
chr7.4	mRNA	57989999	57993969	57989999	ID=MS.gene93246.t1;Parent=MS.gene93246
chr7.4	exon	57989999	57990591	57989999	ID=MS.gene93246.t1.exon1;Parent=MS.gene93246.t1
chr7.4	CDS	57989999	57990591	57989999	ID=cds.MS.gene93246.t1;Parent=MS.gene93246.t1
chr7.4	exon	57992652	57992770	57992652	ID=MS.gene93246.t1.exon2;Parent=MS.gene93246.t1
chr7.4	CDS	57992652	57992770	57992652	ID=cds.MS.gene93246.t1;Parent=MS.gene93246.t1
chr7.4	exon	57993728	57993969	57993728	ID=MS.gene93246.t1.exon3;Parent=MS.gene93246.t1
chr7.4	CDS	57993728	57993969	57993728	ID=cds.MS.gene93246.t1;Parent=MS.gene93246.t1

Gene Sequence

>MS.gene93246

ATGGACTTTGGAGGGAACATGTTCTGTCTCAACAACAGAGACCAAAGTAATACTAGCAATAACGGTAACAGTAACGGTTTTACTTGGTGTAGTAGTGGTAGTACTACTACTGGTACTGCATGGAACATGAATACTTTTAATGTTAATGCCGAAAACAATTCAGTCTCCGCCGCCAACCGTAATGAAGCAGGTCTAGCTAACACGCTTATGTACCTGCCTCAGAACGAAGGCGACGGACGACAGTATCGGAGTGCATACGGTGGAGGTGTGTCTCGGGGTCACATGATGCCTGATCCACACCTCACATGTTTGAAGTTGGGGAAGAGGCATTATTTTGAGGATGTGAGTGGTGGTGGTGGGGGGCTGGCTGGGGAGAAGAAAGGGAAAGGAGGATATTGTGGTGGTGGTGGGAAGACGGCGGCGGTGGTGGGTGGTTATACGGCGGTGACAAGGTGTCAGGTGGATGGGTGTAACGTGGCATTGATGAATGCTAAGGAGTATCATAGGAGACATAAGGTTTGTGAGATGCATTCAAAGGCACCAAAAGTTGTGGTGTTGGGTTTGGAGCAAAGATTCTGTCAACAGTGTAGCAGGTTAGTGTGTTACTCTGTCGTTATCTCATAATACTACACTATATTTTTTAATTTTTTTTTAATAAATGAGGTGTCTGAGGATCAAATTTCAATTCGTACATATAATTGTTGTTATGTTCACAGGACTTATTTATTTGTTACAAATAATGTAGTATGTATATTTGAGTATATTTTTTAGTATGAACAAAAAATAAATCCATATTTACTAGTAGAAAATAGTCCTTTAAAAAACGATTGGTACTTTTACTCAATCCAAATTTAGCAGTAAATATTATCTCATAATTCTATTAATTTTTTAGTATAATAAAAAATAAATTGATTAGCACTTTTACTAGTAATTTATAACTTATCATGCATTTGTAATTAATATTAATTCCTTAAAATGATCGTCGTTGTAACTATCAAGTACGTCCAATTCATTTGATCTATGCTTGATTGTTGGGGTTTGAGTTTGAAATATGTGATTCTCTATTTCTTCACACTTAATATAATAATATTTGCTTGCTATTTGACAAAAAAAAAAAATGATTGGTTTGACTGTTTCAATTTTCATTTTCATCGTTTTATTTATGTATTCTTCGGACCTGCAGAAAACGTCCATTTATTTACGTTTGGTGTTGGATGTGGTAGATGATTTTTACCCTCTTTAAAGCCAACAAATGTATCTGATGTTTGTTGGAATAATAATGGTTTAGACGACAAAAGTGGAGATTCAAAGATAACTACGGTTCTGATTTTTTCTGAAACATTTTAGTATATTTTCATGTGTGACTATGTTATATTTATGAAAAATAAAACTCTTTTCTGACAGTAATAACCTCATACTATTTTATCAATAAAAATATTTCATTATAACAGTGCATAGATCATAAAAATAGATATTAGCAAAAGTGTCCTCGTTAACTCAGTTGACAAGCACAATGCATAATATATACAAGGTTTAGGGTTCGAATCTCGGTCACCACCACTAAAAAAGATATTAGCAATAGTGACACCTGTGAGCAGCCTCGTTAACCGATCTCTAAGAAACTCAAATAGATCCAACTACACATTAGATAAACAATTTGTGAATCGATCTCAAAATTTGCGTAGTGTTCTTTTTTTTTGTCCTCCCAAGAGAATTCAAAATCCCAAAAGATTCACCTTCAATCTCGAATTAGACCATAAAGAACAAGCTCGAATAACAAATCCACTATTGGATAAAAGTCAAGTTACACAGACACAATTTTTTTAAGGTTAATTAAGTAAATGGTCCCCATAAATATTCATGTAAGTAAATGGTCCCCATAAATATTCATGTAAGTAAATGGTCCCCATAAATATTCAGAATTTTGTTTTTAGTCCCTACAAAATAAATGTTATAGGGACTAAAAAGTGTGATTTTATTTTGTAGGGACTAAAAACAAAATTTTGAATATTTATAGGGACCATTTACTTAATTAACCATTTTTTATACAATCGGGTTATAAGATGAGACTTGACTCATCCTTAAAATGAGAAGTGCATTTTTTTTATTTTATAAATTCTTATCAAGAATTATATTTATCTAATGCAGGACTTGAGATTTTTCCAATATCCACATCTATAGTACTAGTGGATCCAAGATTATTCACACAATCTGGATCTTAATCTTAGTGAATGTTTCTTCTATAGAGACAAAATGAATGAAAATCTAAGCTCCAAAAAGAAACCTATACAACTAGAAAGTATTACATTTATTACCAGAAAATTTCAAACATACAAAGATTATCTTTGAGTAGCTTTGAGGTTCAGATTTTTAGTAAAAAAAATGAATTTATAATAATCACAATAACAAATGGAGAATAAATATAATATTTATTAAAAATGAACTCATATTCTAGAGTTCATTATTTCATTAAGTTATATAATTTTTTTTAAAAAATGAATTGATTTTAGAGGCCTCGGTCAAAGGTGTAAAAATTATGTGGGAATATATTTCTCATCTTTGTATTATTTTTTATTTATGTTTTAGGGATTTGTTCATTGGTTAATTGAGATAATTAATATGAAAAATGTGGTGGTGGGGAGTGGTTCTTTAGGTTCCATGTTGTGTCAGAATTTGATGATTCAAAAAGAAGTTGTAGAAGGAGACTGGCAGGGCACAATGAGAGAAGAAGAAAGAGCTCCCATGATTCTGTTGGGAGGAATTCCTCACAGGGTAAGATTGTTGCAACTTGACTCATACTTATTGCAAAATCTACAATCAATTATTTACCATGATATTTACTTTTTTTGAACAATTTTTTACCATGATATTGAATGCAATTGTATCTCATCTTCAGTACTTTATACTGCAATTTGATTCTTGCTTAGAAAATACTAATACCTAATGCATTGAAAATATATAAGAGTACACAATTTTTTTGGTCATTAAATGTATCCGATAGAGTAACTATAGTCCTTGACTGTCTCAAATTTACATAACATCATTGAATGTATCTTCCGTTCGTAATTTGATGGACCAAAATAACAACCAGAAGATACTTTAAAGATAGATGGTGATTATATATAAAATGTTAGATTTGCAATCTTATTATTCATGTGTTCTTCATGCATTTTATCAAGCCTACGTTTTCAATATTTTTTTGAAGGCTTAATTGCATGTTTGATCCCTTATGTTTATTTTAGTTTTCATGTTGGTCCCTTATGTTTTAAAAGTTTCAAGTTGGTCCATTACGTTTTAAAAGTTTCAAGTTGGTTCAAAATGTTACCCACGTTAGAATAAGTTAGTCCTTTCCATCACTTAACGTTTAAAGATTTGGGATGACAATATGTGTGATAGAACTTAACTTATATAGAAAATCAGTTTAAAACCTTTTTTTAATTTTTTTGGTTTTATTAAACTCAATATCATGTCGTGAAAGAGACTAACTTATTCCAAAGTGAGTAACGTTTTGGACCAACTTGAAACTTTTAAAACGTAAGCGACCAACTTGAAAACTAAAATAAACATAAGGGATCAAATATGCAATTAAACCTTTTTTTTATCTGCTTAGTAAAGTAACTGCATGTGTTACTCCTTTTACAGAGAGAAGAAAATAATGTTTAGACATGTAATTTTCTTCATAGTAGACAATATGTTGATGGTTGGTGGTTTTTTGTTTCTTGTAATCAGGTGGGTGTGCTTTCTCTCTTCTGTCATCTCGGACTGATTCATGGCTTTCACCGGCTGACCTCTCCGTAAGATGCAGTGCTGCATTAAGCGAATTGATAGCAGAAAACCGAGCATCGATAATGGCTAGGCAATACGTCTTAGACAGAGACTGGCATTTGCAGCACCATGCCGTGGAAGATTACAAGGAGATCCATTCCGAGTCCAATTATTTCCCACAACATATGTTTCCGCAGACACATTAG

Protein sequence

>MS.gene93246.t1

MDFGGNMFCLNNRDQSNTSNNGNSNGFTWCSSGSTTTGTAWNMNTFNVNAENNSVSAANRNEAGLANTLMYLPQNEGDGRQYRSAYGGGVSRGHMMPDPHLTCLKLGKRHYFEDVSGGGGGLAGEKKGKGGYCGGGGKTAAVVGGYTAVTRCQVDGCNVALMNAKEYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHDSVGRNSSQGGCAFSLLSSRTDSWLSPADLSVRCSAALSELIAENRASIMARQYVLDRDWHLQHHAVEDYKEIHSESNYFPQHMFPQTH