Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93336.t1 | KEH41483.1 | 90.5 | 410 | 21 | 1 | 5 | 414 | 132 | 523 | 4.60E-213 | 750.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93336.t1 | F4J2K2 | 55.6 | 412 | 148 | 7 | 5 | 414 | 247 | 625 | 2.4e-117 | 423.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93336.t1 | A0A072VHI5 | 90.5 | 410 | 21 | 1 | 5 | 414 | 229 | 620 | 3.3e-213 | 750.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053201 | MS.gene93336 | 0.807304 | 5.40E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93336.t1 | MTR_1g051385 | 90.488 | 410 | 21 | 1 | 5 | 414 | 229 | 620 | 0.0 | 758 |
| MS.gene93336.t1 | MTR_1g051385 | 90.488 | 410 | 21 | 1 | 5 | 414 | 132 | 523 | 0.0 | 757 |
| MS.gene93336.t1 | MTR_5g081250 | 44.310 | 413 | 178 | 8 | 5 | 414 | 180 | 543 | 2.78e-106 | 324 |
| MS.gene93336.t1 | MTR_3g069160 | 45.122 | 410 | 173 | 8 | 5 | 414 | 40 | 397 | 7.95e-103 | 311 |
| MS.gene93336.t1 | MTR_3g069160 | 45.874 | 412 | 184 | 9 | 5 | 414 | 226 | 600 | 1.74e-102 | 316 |
| MS.gene93336.t1 | MTR_3g069160 | 45.122 | 410 | 173 | 8 | 5 | 414 | 176 | 533 | 1.66e-100 | 309 |
| MS.gene93336.t1 | MTR_3g069180 | 45.343 | 408 | 171 | 8 | 5 | 412 | 226 | 581 | 1.29e-98 | 307 |
| MS.gene93336.t1 | MTR_5g081250 | 42.278 | 395 | 176 | 8 | 5 | 396 | 180 | 525 | 1.97e-94 | 293 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene93336.t1 | AT3G10160 | 55.583 | 412 | 148 | 7 | 5 | 414 | 247 | 625 | 2.05e-147 | 432 |
| MS.gene93336.t1 | AT5G05980 | 45.499 | 411 | 156 | 9 | 5 | 414 | 170 | 513 | 1.92e-104 | 319 |
| MS.gene93336.t1 | AT5G05980 | 45.499 | 411 | 156 | 9 | 5 | 414 | 228 | 571 | 1.00e-103 | 318 |
| MS.gene93336.t1 | AT3G55630 | 40.633 | 411 | 151 | 10 | 5 | 414 | 40 | 358 | 1.01e-85 | 265 |
| MS.gene93336.t1 | AT3G55630 | 40.633 | 411 | 151 | 10 | 5 | 414 | 152 | 470 | 1.93e-84 | 266 |
| MS.gene93336.t1 | AT3G55630 | 40.633 | 411 | 151 | 10 | 5 | 414 | 117 | 435 | 2.64e-84 | 264 |
| MS.gene93336.t1 | AT3G55630 | 40.633 | 411 | 151 | 10 | 5 | 414 | 117 | 435 | 2.64e-84 | 264 |
| MS.gene93336.t1 | AT3G55630 | 40.633 | 411 | 151 | 10 | 5 | 414 | 117 | 435 | 2.64e-84 | 264 |
| MS.gene93336.t1 | AT3G55630 | 40.633 | 411 | 151 | 10 | 5 | 414 | 173 | 491 | 4.71e-84 | 265 |
| MS.gene93336.t1 | AT3G55630 | 40.633 | 411 | 151 | 10 | 5 | 414 | 174 | 492 | 5.56e-84 | 265 |
Find 95 sgRNAs with CRISPR-Local
Find 298 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AATTTAACCTTCAAAGAATA+TGG | 0.205054 | 1.3:+33291155 | MS.gene93336:CDS |
| AATGATTACCATGAGTTCTT+TGG | 0.243001 | 1.3:-33288504 | None:intergenic |
| CATTGCCATTGACAATAAAA+TGG | 0.243374 | 1.3:+33291728 | MS.gene93336:CDS |
| GGCTTCAGAGAACAGGAAAT+TGG | 0.275782 | 1.3:+33289157 | MS.gene93336:CDS |
| GGATTAAAGTTCTGTTTATC+TGG | 0.315591 | 1.3:+33289084 | MS.gene93336:CDS |
| GTCTGCGGCATTACTTCATT+GGG | 0.334439 | 1.3:+33287969 | MS.gene93336:CDS |
| ATGGATCATACTGAGATATT+AGG | 0.343396 | 1.3:+33287993 | MS.gene93336:CDS |
| TGTCACTGGATCTCTGCATT+TGG | 0.350679 | 1.3:+33292491 | MS.gene93336:CDS |
| ATCCATTGCTTCAGGAAGTT+GGG | 0.351894 | 1.3:-33288465 | None:intergenic |
| TTGCCAGATGAATTTATTAG+AGG | 0.366395 | 1.3:+33289620 | MS.gene93336:CDS |
| TGTCTGCGGCATTACTTCAT+TGG | 0.371600 | 1.3:+33287968 | MS.gene93336:CDS |
| AGGATAACATCCATTGCTTC+AGG | 0.379619 | 1.3:-33288473 | None:intergenic |
| TTCATTTGTTTACAATCTAA+AGG | 0.385976 | 1.3:-33289060 | None:intergenic |
| TCTACATGAGAGCAAGGCCT+TGG | 0.387852 | 1.3:+33289892 | MS.gene93336:CDS |
| TCTTCTCCCATATTCTTTGA+AGG | 0.391099 | 1.3:-33291162 | None:intergenic |
| GCAGAGGAATCATCAGAAAA+TGG | 0.394869 | 1.3:+33289863 | MS.gene93336:CDS |
| ACTGTGAAGGCAGGAACTTT+AGG | 0.398825 | 1.3:-33288440 | None:intergenic |
| TTTATTGTCAATGGCAATGA+AGG | 0.404522 | 1.3:-33291724 | None:intergenic |
| GAAGGTTAAATTGCCATGAT+AGG | 0.406871 | 1.3:-33291144 | None:intergenic |
| CTACATGAGAGCAAGGCCTT+GGG | 0.408374 | 1.3:+33289893 | MS.gene93336:CDS |
| TATCGATCGCACTTGTCTAT+TGG | 0.409058 | 1.3:+33289830 | MS.gene93336:CDS |
| TTTAGATTGTAAACAAATGA+AGG | 0.411217 | 1.3:+33289062 | MS.gene93336:CDS |
| CATCCATTGCTTCAGGAAGT+TGG | 0.413740 | 1.3:-33288466 | None:intergenic |
| CTCACCTGAAGTCTTGTTGA+TGG | 0.424925 | 1.3:-33291775 | None:intergenic |
| ACACCCATCAACAAGACTTC+AGG | 0.427459 | 1.3:+33291771 | MS.gene93336:CDS |
| GCACATGCATCCATGCTCTC+TGG | 0.438292 | 1.3:-33289773 | None:intergenic |
| AAGTACACTAAGGTTACTTC+TGG | 0.439062 | 1.3:+33291085 | MS.gene93336:CDS |
| ATTTAACCTTCAAAGAATAT+GGG | 0.448933 | 1.3:+33291156 | MS.gene93336:CDS |
| AGACCTCTAATAAATTCATC+TGG | 0.451955 | 1.3:-33289623 | None:intergenic |
| GCTTCAGAGAACAGGAAATT+GGG | 0.459715 | 1.3:+33289158 | MS.gene93336:CDS |
| AGATGCTGGCTTCAGAGAAC+AGG | 0.463002 | 1.3:+33289150 | MS.gene93336:CDS |
| TTTATATGATAATGCTTCAA+AGG | 0.463285 | 1.3:+33291660 | MS.gene93336:CDS |
| ATGGTGTAGGTTCTTGTCAC+TGG | 0.464433 | 1.3:+33292477 | MS.gene93336:intron |
| AACCGTGGAAGCAAAATGTT+AGG | 0.465270 | 1.3:-33290248 | None:intergenic |
| CGGCATTACTTCATTGGGGA+TGG | 0.465489 | 1.3:+33287974 | MS.gene93336:CDS |
| CAAGAGCAGCATTATATAGT+TGG | 0.469646 | 1.3:-33289113 | None:intergenic |
| TCGATATTTATATCCCTTTG+CGG | 0.471960 | 1.3:-33289813 | None:intergenic |
| GTTAGAAAATTCTTGTAGGC+AGG | 0.472392 | 1.3:+33289919 | MS.gene93336:CDS |
| CATTGACAATAAAATGGTTG+AGG | 0.476572 | 1.3:+33291734 | MS.gene93336:CDS |
| ACTGGATCTCTGCATTTGGT+TGG | 0.477769 | 1.3:+33292495 | MS.gene93336:CDS |
| GGCTGTTAGAAAATTCTTGT+AGG | 0.480109 | 1.3:+33289915 | MS.gene93336:CDS |
| TTATATGATAATGCTTCAAA+GGG | 0.491518 | 1.3:+33291661 | MS.gene93336:CDS |
| GGCCTTGCTCTCATGTAGAA+AGG | 0.494564 | 1.3:-33289888 | None:intergenic |
| GTGAATGCATGTGCTTCGTC+AGG | 0.496330 | 1.3:+33290272 | MS.gene93336:CDS |
| GCCTTGCTCTCATGTAGAAA+GGG | 0.496507 | 1.3:-33289887 | None:intergenic |
| AATGTATTGAAGCGTTGCTT+AGG | 0.498364 | 1.3:+33291022 | MS.gene93336:CDS |
| CAGTCTCAATCTCTAGATGC+TGG | 0.502398 | 1.3:+33289136 | MS.gene93336:CDS |
| TAAATGGCTGCAGGTTCCAC+TGG | 0.503014 | 1.3:+33289026 | MS.gene93336:intron |
| GGAGAAGATTATGCATGGGA+AGG | 0.527269 | 1.3:+33291177 | MS.gene93336:CDS |
| TCACCTGAAGTCTTGTTGAT+GGG | 0.531972 | 1.3:-33291774 | None:intergenic |
| TGGTTCTCTAATGCCGCAAA+GGG | 0.533237 | 1.3:+33289800 | MS.gene93336:CDS |
| ATTGACAATAAAATGGTTGA+GGG | 0.534001 | 1.3:+33291735 | MS.gene93336:CDS |
| CAGATAGCATCACACAAGAC+AGG | 0.536110 | 1.3:+33288240 | MS.gene93336:CDS |
| AGCTCATAGTCCAGAGAGCA+TGG | 0.536118 | 1.3:+33289763 | MS.gene93336:CDS |
| ACCCCAACTTCCTGAAGCAA+TGG | 0.540551 | 1.3:+33288463 | MS.gene93336:CDS |
| TGAGTTCTTTGGCCCTCTCA+AGG | 0.545094 | 1.3:-33288493 | None:intergenic |
| GAAGTAATGCCGCAGACAGT+AGG | 0.547867 | 1.3:-33287963 | None:intergenic |
| TCAGTGGGATAGACCTATCA+TGG | 0.551648 | 1.3:+33291131 | MS.gene93336:CDS |
| TTAGATTGTAAACAAATGAA+GGG | 0.552350 | 1.3:+33289063 | MS.gene93336:CDS |
| GTGGTTCTCTAATGCCGCAA+AGG | 0.557622 | 1.3:+33289799 | MS.gene93336:CDS |
| AATGACCACTTTGCTTGACA+AGG | 0.564323 | 1.3:+33291594 | MS.gene93336:CDS |
| TATTCCTACTTCAATTAACC+TGG | 0.565796 | 1.3:+33290295 | MS.gene93336:CDS |
| AGTACCAGGTTAATTGAAGT+AGG | 0.570906 | 1.3:-33290299 | None:intergenic |
| GAAGGTATTACTGCACTGCA+TGG | 0.571747 | 1.3:-33291706 | None:intergenic |
| TTATTCCTTCTGATCTCAGT+GGG | 0.572044 | 1.3:+33291116 | MS.gene93336:CDS |
| CAAATCCTTGTCAAGCAAAG+TGG | 0.575079 | 1.3:-33291599 | None:intergenic |
| GAGAGTATGTCTGAAAATTG+TGG | 0.575351 | 1.3:+33289713 | MS.gene93336:CDS |
| TCCATTGCTTCAGGAAGTTG+GGG | 0.576427 | 1.3:-33288464 | None:intergenic |
| TCTATCCCACTGAGATCAGA+AGG | 0.577065 | 1.3:-33291121 | None:intergenic |
| TGAGAGGGCCAAAGAACTCA+TGG | 0.578802 | 1.3:+33288496 | MS.gene93336:CDS |
| TATGATAATGCTTCAAAGGG+AGG | 0.580173 | 1.3:+33291664 | MS.gene93336:CDS |
| CAATGGATGTTATCCTTGAG+AGG | 0.580647 | 1.3:+33288480 | MS.gene93336:CDS |
| AGGAAGTTGGGGTACTGTGA+AGG | 0.586551 | 1.3:-33288453 | None:intergenic |
| AGTTGGGGTACTGTGAAGGC+AGG | 0.588228 | 1.3:-33288449 | None:intergenic |
| ATATGGGAGAAGATTATGCA+TGG | 0.590117 | 1.3:+33291172 | MS.gene93336:CDS |
| TACATGAGAGCAAGGCCTTG+GGG | 0.603594 | 1.3:+33289894 | MS.gene93336:CDS |
| CATGGAAAATCGCTGTGGGA+AGG | 0.606122 | 1.3:-33291688 | None:intergenic |
| GAGTATGTCAAAGTACACTA+AGG | 0.606657 | 1.3:+33291075 | MS.gene93336:CDS |
| AATCCTGCAGGGGATACTCT+CGG | 0.606667 | 1.3:+33288216 | MS.gene93336:intron |
| AAAGGCTCAGTAACTTCCAG+TGG | 0.609530 | 1.3:-33289042 | None:intergenic |
| ATTAAAGAGCCTACTGTCTG+CGG | 0.612319 | 1.3:+33287954 | MS.gene93336:CDS |
| CACTGCATGGAAAATCGCTG+TGG | 0.612514 | 1.3:-33291693 | None:intergenic |
| TCCCTTTCTACATGAGAGCA+AGG | 0.614796 | 1.3:+33289886 | MS.gene93336:CDS |
| GAGAAGATTATGCATGGGAA+GGG | 0.622405 | 1.3:+33291178 | MS.gene93336:CDS |
| TATGGGAGAAGATTATGCAT+GGG | 0.627145 | 1.3:+33291173 | MS.gene93336:CDS |
| AATGGATGTTATCCTTGAGA+GGG | 0.634020 | 1.3:+33288481 | MS.gene93336:CDS |
| TCTGCGGCATTACTTCATTG+GGG | 0.637989 | 1.3:+33287970 | MS.gene93336:CDS |
| TTAGTGTACTTTGACATACT+CGG | 0.639446 | 1.3:-33291073 | None:intergenic |
| GTTATTCCTTCTGATCTCAG+TGG | 0.642171 | 1.3:+33291115 | MS.gene93336:CDS |
| ACTGCATGGAAAATCGCTGT+GGG | 0.650313 | 1.3:-33291692 | None:intergenic |
| GCACATGCATTCACTAACCG+TGG | 0.656216 | 1.3:-33290263 | None:intergenic |
| TATTGGTGTAGTAAATGCAG+AGG | 0.657568 | 1.3:+33289847 | MS.gene93336:CDS |
| AGATAGCATCACACAAGACA+GGG | 0.660420 | 1.3:+33288241 | MS.gene93336:CDS |
| AGTATGTCTGAAAATTGTGG+CGG | 0.711786 | 1.3:+33289716 | MS.gene93336:CDS |
| GCATGGATGCATGTGCAAAG+TGG | 0.717898 | 1.3:+33289780 | MS.gene93336:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATATATAATTTAATATTTA+CGG | + | chr1.3:33290385-33290404 | MS.gene93336:intron | 0.0% |
| !! | AAGTAAGAAAATATATAAAA+CGG | - | chr1.3:33290956-33290975 | None:intergenic | 10.0% |
| !! | TAATAATAATATCAGTAATT+AGG | + | chr1.3:33289302-33289321 | MS.gene93336:intron | 10.0% |
| !! | TTAAATTATATATACAATCA+AGG | - | chr1.3:33290379-33290398 | None:intergenic | 10.0% |
| !!! | TAATTAGATTTTAATGATTT+TGG | + | chr1.3:33289398-33289417 | MS.gene93336:intron | 10.0% |
| !!! | TTTTATGAAATTTCTTAATT+AGG | + | chr1.3:33288859-33288878 | MS.gene93336:intron | 10.0% |
| !! | GTATATAATGAAAATTTCTT+TGG | - | chr1.3:33288121-33288140 | None:intergenic | 15.0% |
| !! | TAAAAGATAAGAAAAAACAA+TGG | - | chr1.3:33288391-33288410 | None:intergenic | 15.0% |
| !! | TTATCATATAAAAATTCATG+AGG | - | chr1.3:33291652-33291671 | None:intergenic | 15.0% |
| !!! | ATTGATTTATATGTAAAGAT+AGG | + | chr1.3:33288308-33288327 | MS.gene93336:intron | 15.0% |
| !!! | TTATATACTTCAAAATTTTG+TGG | + | chr1.3:33288133-33288152 | MS.gene93336:intron | 15.0% |
| !!! | TTTTATGAAATTTCTCAATT+AGG | + | chr1.3:33288757-33288776 | MS.gene93336:intron | 15.0% |
| !! | AATTTAACCTTCAAAGAATA+TGG | + | chr1.3:33291155-33291174 | MS.gene93336:CDS | 20.0% |
| !! | ACTAAAAAAAGTTAAGAGTT+GGG | - | chr1.3:33290095-33290114 | None:intergenic | 20.0% |
| !! | AGAAATAATAAAACAAGGAA+TGG | + | chr1.3:33290922-33290941 | MS.gene93336:intron | 20.0% |
| !! | ATTTAACCTTCAAAGAATAT+GGG | + | chr1.3:33291156-33291175 | MS.gene93336:CDS | 20.0% |
| !! | CAGAAAGAAATAATAAAACA+AGG | + | chr1.3:33290917-33290936 | MS.gene93336:intron | 20.0% |
| !! | GCATTATATTCTACTTTAAA+CGG | + | chr1.3:33290494-33290513 | MS.gene93336:intron | 20.0% |
| !! | TAACTATGATAAATTTACGA+CGG | + | chr1.3:33288538-33288557 | MS.gene93336:intron | 20.0% |
| !! | TAATTAAACATTTCAATGTC+TGG | - | chr1.3:33289384-33289403 | None:intergenic | 20.0% |
| !! | TGAAATTTCTTAATTAGGTT+TGG | + | chr1.3:33288864-33288883 | MS.gene93336:intron | 20.0% |
| !! | TTAATGAATTATGACCAATA+AGG | - | chr1.3:33289258-33289277 | None:intergenic | 20.0% |
| !! | TTAGATTGTAAACAAATGAA+GGG | + | chr1.3:33289063-33289082 | MS.gene93336:CDS | 20.0% |
| !! | TTCATTTGTTTACAATCTAA+AGG | - | chr1.3:33289063-33289082 | None:intergenic | 20.0% |
| !! | TTTAGATTGTAAACAAATGA+AGG | + | chr1.3:33289062-33289081 | MS.gene93336:CDS | 20.0% |
| !!! | AAAGTATGTGTTATTTGTTT+TGG | + | chr1.3:33292236-33292255 | MS.gene93336:intron | 20.0% |
| !!! | AAGTCAGTTTAATTCTTTTT+GGG | + | chr1.3:33292006-33292025 | MS.gene93336:intron | 20.0% |
| !!! | ATACTCACTTTATTTTTCAA+TGG | - | chr1.3:33288589-33288608 | None:intergenic | 20.0% |
| !!! | TAAGTTTTAAAGTTCAGTAA+CGG | + | chr1.3:33291367-33291386 | MS.gene93336:intron | 20.0% |
| !!! | TAGATTTTAATGATTTTGGA+CGG | + | chr1.3:33289402-33289421 | MS.gene93336:intron | 20.0% |
| !!! | TTAGTTTTTAACTGTACATT+AGG | + | chr1.3:33289580-33289599 | MS.gene93336:intron | 20.0% |
| !!! | TTATATGATAATGCTTCAAA+GGG | + | chr1.3:33291661-33291680 | MS.gene93336:CDS | 20.0% |
| !!! | TTTATATGATAATGCTTCAA+AGG | + | chr1.3:33291660-33291679 | MS.gene93336:CDS | 20.0% |
| !!! | TTTGACAATATCTCATATTT+TGG | - | chr1.3:33292142-33292161 | None:intergenic | 20.0% |
| ! | AAATAAACAAAACAATGTGC+AGG | - | chr1.3:33291569-33291588 | None:intergenic | 25.0% |
| ! | AAGATAAGAAAAAACAATGG+CGG | - | chr1.3:33288388-33288407 | None:intergenic | 25.0% |
| ! | ACATTTATGTTGTTATGGAT+AGG | + | chr1.3:33290764-33290783 | MS.gene93336:intron | 25.0% |
| ! | AGAAAATATATAAAACGGTC+AGG | - | chr1.3:33290951-33290970 | None:intergenic | 25.0% |
| ! | AGGCTTTCAATTAGATAAAT+TGG | - | chr1.3:33288358-33288377 | None:intergenic | 25.0% |
| ! | AGTATCTTCAACTGAAATTA+AGG | - | chr1.3:33291499-33291518 | None:intergenic | 25.0% |
| ! | AGTGAGAAAAAACAAAATAC+TGG | - | chr1.3:33289433-33289452 | None:intergenic | 25.0% |
| ! | ATATGTAAAGATAGGTTTCT+TGG | + | chr1.3:33288316-33288335 | MS.gene93336:intron | 25.0% |
| ! | ATATTTAATGCATACCAACA+AGG | - | chr1.3:33289358-33289377 | None:intergenic | 25.0% |
| ! | ATGAGGTAATTATAGTAGAA+TGG | - | chr1.3:33290832-33290851 | None:intergenic | 25.0% |
| ! | ATGATCAAATACAATTCACA+TGG | - | chr1.3:33290146-33290165 | None:intergenic | 25.0% |
| ! | ATTATCTTTAGTTAATCTGC+TGG | + | chr1.3:33290520-33290539 | MS.gene93336:intron | 25.0% |
| ! | ATTGACAATAAAATGGTTGA+GGG | + | chr1.3:33291735-33291754 | MS.gene93336:CDS | 25.0% |
| ! | CCTAGTATTTACTAACAAAT+GGG | - | chr1.3:33290037-33290056 | None:intergenic | 25.0% |
| ! | CTAAAAAAAGTTAAGAGTTG+GGG | - | chr1.3:33290094-33290113 | None:intergenic | 25.0% |
| ! | CTAGTATTTACTAACAAATG+GGG | - | chr1.3:33290036-33290055 | None:intergenic | 25.0% |
| ! | GACTAAAAAAAGTTAAGAGT+TGG | - | chr1.3:33290096-33290115 | None:intergenic | 25.0% |
| ! | GGAAAACATTTATGTTGTTA+TGG | + | chr1.3:33290759-33290778 | MS.gene93336:intron | 25.0% |
| ! | GTCGTAAATTTATCATAGTT+AGG | - | chr1.3:33288539-33288558 | None:intergenic | 25.0% |
| ! | GTTAAAAACTAAAGTCAAAG+TGG | - | chr1.3:33289572-33289591 | None:intergenic | 25.0% |
| ! | GTTAATCAATTATGAACATC+AGG | - | chr1.3:33290190-33290209 | None:intergenic | 25.0% |
| ! | TAAAACAGGCAAAGAATTAT+TGG | - | chr1.3:33289008-33289027 | None:intergenic | 25.0% |
| ! | TAAAATGATTAAATCCTGCA+GGG | + | chr1.3:33288205-33288224 | MS.gene93336:intron | 25.0% |
| ! | TAAGCTTAACAATTGATGTT+GGG | + | chr1.3:33289980-33289999 | MS.gene93336:intron | 25.0% |
| ! | TACTACTATTAAGTCTTCTA+AGG | - | chr1.3:33291523-33291542 | None:intergenic | 25.0% |
| ! | TATAAATCAATGTGCAAGTT+TGG | - | chr1.3:33288299-33288318 | None:intergenic | 25.0% |
| ! | TATTTAATGCATACCAACAA+GGG | - | chr1.3:33289357-33289376 | None:intergenic | 25.0% |
| ! | TCATATAAAAATTCATGAGG+TGG | - | chr1.3:33291649-33291668 | None:intergenic | 25.0% |
| ! | TCCTAGTATTTACTAACAAA+TGG | - | chr1.3:33290038-33290057 | None:intergenic | 25.0% |
| ! | TGAAATTTCTCAATTAGGTA+TGG | + | chr1.3:33288762-33288781 | MS.gene93336:intron | 25.0% |
| ! | TTAAGCTTAACAATTGATGT+TGG | + | chr1.3:33289979-33289998 | MS.gene93336:intron | 25.0% |
| !! | AATATTATGCTAAGCCTTAT+TGG | + | chr1.3:33289241-33289260 | MS.gene93336:intron | 25.0% |
| !! | CAAAACAATATCTCATCTTT+TGG | - | chr1.3:33291328-33291347 | None:intergenic | 25.0% |
| !! | CAAAAGATGAGATATTGTTT+TGG | + | chr1.3:33291326-33291345 | MS.gene93336:intron | 25.0% |
| !! | GAAGTCAGTTTAATTCTTTT+TGG | + | chr1.3:33292005-33292024 | MS.gene93336:intron | 25.0% |
| !! | TCTAGTTTAGTAGGAAATAT+AGG | + | chr1.3:33288962-33288981 | MS.gene93336:intron | 25.0% |
| !!! | AATTCTTTGCCTGTTTTAAA+TGG | + | chr1.3:33289010-33289029 | MS.gene93336:intron | 25.0% |
| !!! | GAGTTGATATTTTATTTGGA+CGG | + | chr1.3:33289740-33289759 | MS.gene93336:CDS | 25.0% |
| !!! | GTCAAAATAAAAAAAGTACC+AGG | - | chr1.3:33290316-33290335 | None:intergenic | 25.0% |
| !!! | TGTGTATTATTTCTGAAATG+AGG | - | chr1.3:33290849-33290868 | None:intergenic | 25.0% |
| !!! | TTTGGTTCTAAAGAGTATAA+CGG | + | chr1.3:33292254-33292273 | MS.gene93336:intron | 25.0% |
| AAAATGATTAAATCCTGCAG+GGG | + | chr1.3:33288206-33288225 | MS.gene93336:intron | 30.0% | |
| AAATTAAGGAATTCTGCTAC+GGG | - | chr1.3:33291485-33291504 | None:intergenic | 30.0% | |
| AACCAAATTAATACACTCAC+CGG | - | chr1.3:33292108-33292127 | None:intergenic | 30.0% | |
| AATGATTACCATGAGTTCTT+TGG | - | chr1.3:33288507-33288526 | None:intergenic | 30.0% | |
| AATGGGGAAATATTGAAGAA+AGG | - | chr1.3:33290020-33290039 | None:intergenic | 30.0% | |
| AGACCTCTAATAAATTCATC+TGG | - | chr1.3:33289626-33289645 | None:intergenic | 30.0% | |
| AGATAAGAAAAAACAATGGC+GGG | - | chr1.3:33288387-33288406 | None:intergenic | 30.0% | |
| AGCATCAAACAAAGAAAGAA+GGG | - | chr1.3:33289505-33289524 | None:intergenic | 30.0% | |
| AGGAAATATAGGTCATTCAT+CGG | + | chr1.3:33288973-33288992 | MS.gene93336:intron | 30.0% | |
| AGTACAACTCAAATGGTAAT+AGG | - | chr1.3:33292359-33292378 | None:intergenic | 30.0% | |
| AGTCTACACTTGGTAAAATA+AGG | + | chr1.3:33290625-33290644 | MS.gene93336:intron | 30.0% | |
| ATATTACAAGCTGGAAAGAT+AGG | - | chr1.3:33291209-33291228 | None:intergenic | 30.0% | |
| ATGAGATATTTGATATGCTG+GGG | - | chr1.3:33292336-33292355 | None:intergenic | 30.0% | |
| ATGGATCATACTGAGATATT+AGG | + | chr1.3:33287993-33288012 | MS.gene93336:CDS | 30.0% | |
| CATTGACAATAAAATGGTTG+AGG | + | chr1.3:33291734-33291753 | MS.gene93336:CDS | 30.0% | |
| CATTGCCATTGACAATAAAA+TGG | + | chr1.3:33291728-33291747 | MS.gene93336:CDS | 30.0% | |
| CGGTTAAAGAGAAAAATTTG+AGG | - | chr1.3:33291853-33291872 | None:intergenic | 30.0% | |
| CTCTAATATTAAAGCTGTGT+TGG | + | chr1.3:33289523-33289542 | MS.gene93336:intron | 30.0% | |
| GAAATTAAGGAATTCTGCTA+CGG | - | chr1.3:33291486-33291505 | None:intergenic | 30.0% | |
| GATGAGATATTTGATATGCT+GGG | - | chr1.3:33292337-33292356 | None:intergenic | 30.0% | |
| GGATTAAAGTTCTGTTTATC+TGG | + | chr1.3:33289084-33289103 | MS.gene93336:CDS | 30.0% | |
| GTAAAATGATTAAATCCTGC+AGG | + | chr1.3:33288204-33288223 | MS.gene93336:intron | 30.0% | |
| GTCTACACTTGGTAAAATAA+GGG | + | chr1.3:33290626-33290645 | MS.gene93336:intron | 30.0% | |
| TATTCCTACTTCAATTAACC+TGG | + | chr1.3:33290295-33290314 | MS.gene93336:CDS | 30.0% | |
| TCGATATTTATATCCCTTTG+CGG | - | chr1.3:33289816-33289835 | None:intergenic | 30.0% | |
| TCTACACTTGGTAAAATAAG+GGG | + | chr1.3:33290627-33290646 | MS.gene93336:intron | 30.0% | |
| TGTCATTAATCATCAGACTT+TGG | + | chr1.3:33291397-33291416 | MS.gene93336:intron | 30.0% | |
| TGTCTTTCATGTAGCTAAAA+TGG | + | chr1.3:33291277-33291296 | MS.gene93336:intron | 30.0% | |
| TTAGTGTACTTTGACATACT+CGG | - | chr1.3:33291076-33291095 | None:intergenic | 30.0% | |
| TTAGTTAATCTGCTGGAAAA+TGG | + | chr1.3:33290527-33290546 | MS.gene93336:intron | 30.0% | |
| TTGCCAGATGAATTTATTAG+AGG | + | chr1.3:33289620-33289639 | MS.gene93336:CDS | 30.0% | |
| TTTATTGTCAATGGCAATGA+AGG | - | chr1.3:33291727-33291746 | None:intergenic | 30.0% | |
| ! | AACGATGAATGTACTGATAA+TGG | + | chr1.3:33291433-33291452 | MS.gene93336:intron | 30.0% |
| ! | AACTGTACATTAGGATTTTC+AGG | + | chr1.3:33289589-33289608 | MS.gene93336:intron | 30.0% |
| ! | ATTTTTCCCATATGTCAAGA+GGG | - | chr1.3:33290468-33290487 | None:intergenic | 30.0% |
| ! | CCCATTTGTTAGTAAATACT+AGG | + | chr1.3:33290034-33290053 | MS.gene93336:intron | 30.0% |
| ! | CTCAACCATTTTATTGTCAA+TGG | - | chr1.3:33291736-33291755 | None:intergenic | 30.0% |
| ! | GATTTTTACTAGAATGCACT+CGG | - | chr1.3:33291873-33291892 | None:intergenic | 30.0% |
| ! | TTTAATGATTTTGGACGGAT+TGG | + | chr1.3:33289407-33289426 | MS.gene93336:intron | 30.0% |
| ! | TTTCAACTGCCAATTTTTCT+GGG | + | chr1.3:33289645-33289664 | MS.gene93336:CDS | 30.0% |
| !! | CACAAACGTTTTATTGAGAA+AGG | - | chr1.3:33292437-33292456 | None:intergenic | 30.0% |
| !! | CTTATGTTGACTTACTTACA+TGG | + | chr1.3:33291820-33291839 | MS.gene93336:intron | 30.0% |
| !! | TACCATTTGAGTTGTACTTA+CGG | + | chr1.3:33292361-33292380 | MS.gene93336:intron | 30.0% |
| !!! | ATACCACTTTTTTCGTATTG+TGG | - | chr1.3:33288184-33288203 | None:intergenic | 30.0% |
| !!! | ATCTCATATTTTGGTTACAG+TGG | - | chr1.3:33292133-33292152 | None:intergenic | 30.0% |
| !!! | CAGTTTAATTCTTTTTGGGT+TGG | + | chr1.3:33292010-33292029 | MS.gene93336:intron | 30.0% |
| !!! | CGGAGAGTTGATATTTTATT+TGG | + | chr1.3:33289736-33289755 | MS.gene93336:CDS | 30.0% |
| !!! | GATATTGTTTTGGATCTTTC+TGG | + | chr1.3:33291336-33291355 | MS.gene93336:intron | 30.0% |
| AAAGCAATTGATACACTCAC+CGG | - | chr1.3:33292168-33292187 | None:intergenic | 35.0% | |
| AAGTACACTAAGGTTACTTC+TGG | + | chr1.3:33291085-33291104 | MS.gene93336:CDS | 35.0% | |
| AATACCATGAGTTCAAAACG+AGG | - | chr1.3:33288566-33288585 | None:intergenic | 35.0% | |
| AATGGATGTTATCCTTGAGA+GGG | + | chr1.3:33288481-33288500 | MS.gene93336:CDS | 35.0% | |
| ACACAGCAAACACTTAACAA+TGG | - | chr1.3:33290881-33290900 | None:intergenic | 35.0% | |
| ACCAAATTAATACACTCACC+GGG | - | chr1.3:33292107-33292126 | None:intergenic | 35.0% | |
| AGGGAAGATGATTCATCATT+TGG | + | chr1.3:33290580-33290599 | MS.gene93336:intron | 35.0% | |
| AGTACCAGGTTAATTGAAGT+AGG | - | chr1.3:33290302-33290321 | None:intergenic | 35.0% | |
| AGTATGTCTGAAAATTGTGG+CGG | + | chr1.3:33289716-33289735 | MS.gene93336:CDS | 35.0% | |
| ATACCATGAGTTCAAAACGA+GGG | - | chr1.3:33288565-33288584 | None:intergenic | 35.0% | |
| ATATGGGAGAAGATTATGCA+TGG | + | chr1.3:33291172-33291191 | MS.gene93336:CDS | 35.0% | |
| ATCAAACAAAGAAAGAAGGG+CGG | - | chr1.3:33289502-33289521 | None:intergenic | 35.0% | |
| ATCTTAACGACATCATTGTG+AGG | - | chr1.3:33291243-33291262 | None:intergenic | 35.0% | |
| ATGAGATATTGTCAAAACCC+CGG | + | chr1.3:33292146-33292165 | MS.gene93336:intron | 35.0% | |
| ATGGCAAAAACAAGAAGACA+AGG | - | chr1.3:33292062-33292081 | None:intergenic | 35.0% | |
| CAAGAGCAGCATTATATAGT+TGG | - | chr1.3:33289116-33289135 | None:intergenic | 35.0% | |
| CTCAAATACACGAAGTAACT+AGG | - | chr1.3:33288939-33288958 | None:intergenic | 35.0% | |
| GAAGGTTAAATTGCCATGAT+AGG | - | chr1.3:33291147-33291166 | None:intergenic | 35.0% | |
| GAGCATCAAACAAAGAAAGA+AGG | - | chr1.3:33289506-33289525 | None:intergenic | 35.0% | |
| GAGTATGTCAAAGTACACTA+AGG | + | chr1.3:33291075-33291094 | MS.gene93336:CDS | 35.0% | |
| GATAAGAAAAAACAATGGCG+GGG | - | chr1.3:33288386-33288405 | None:intergenic | 35.0% | |
| GGATGAGATATTTGATATGC+TGG | - | chr1.3:33292338-33292357 | None:intergenic | 35.0% | |
| GGCTGTTAGAAAATTCTTGT+AGG | + | chr1.3:33289915-33289934 | MS.gene93336:CDS | 35.0% | |
| GTCTGATAGGTTATCTATCA+TGG | + | chr1.3:33288894-33288913 | MS.gene93336:intron | 35.0% | |
| GTTAGAAAATTCTTGTAGGC+AGG | + | chr1.3:33289919-33289938 | MS.gene93336:CDS | 35.0% | |
| TAATCTGCTGGAAAATGGTA+GGG | + | chr1.3:33290532-33290551 | MS.gene93336:intron | 35.0% | |
| TATGGGAGAAGATTATGCAT+GGG | + | chr1.3:33291173-33291192 | MS.gene93336:CDS | 35.0% | |
| TATTGGTGTAGTAAATGCAG+AGG | + | chr1.3:33289847-33289866 | MS.gene93336:CDS | 35.0% | |
| TCTTCTCCCATATTCTTTGA+AGG | - | chr1.3:33291165-33291184 | None:intergenic | 35.0% | |
| TGACAGAGAATATTACAAGC+TGG | - | chr1.3:33291218-33291237 | None:intergenic | 35.0% | |
| TGACCACAATACGAAAAAAG+TGG | + | chr1.3:33288178-33288197 | MS.gene93336:intron | 35.0% | |
| TGCAAGGTTGTATCTTTCTT+TGG | + | chr1.3:33291942-33291961 | MS.gene93336:intron | 35.0% | |
| TGTGATTGCAGTTAGCAAAT+AGG | + | chr1.3:33290714-33290733 | MS.gene93336:intron | 35.0% | |
| TTAATCTGCTGGAAAATGGT+AGG | + | chr1.3:33290531-33290550 | MS.gene93336:intron | 35.0% | |
| TTATTCCTTCTGATCTCAGT+GGG | + | chr1.3:33291116-33291135 | MS.gene93336:CDS | 35.0% | |
| TTGTTAACTGTATCCCTTGT+TGG | + | chr1.3:33289341-33289360 | MS.gene93336:intron | 35.0% | |
| ! | ACACAAGACAGGGATTTTTA+AGG | + | chr1.3:33288251-33288270 | MS.gene93336:CDS | 35.0% |
| ! | ATCCTAACATTTTGCTTCCA+CGG | + | chr1.3:33290246-33290265 | MS.gene93336:CDS | 35.0% |
| ! | ATTGAGTCTTTTGCACCAAA+AGG | + | chr1.3:33290560-33290579 | MS.gene93336:intron | 35.0% |
| ! | ATTGATATTGTTGGCTAAGC+GGG | - | chr1.3:33290065-33290084 | None:intergenic | 35.0% |
| ! | CATTGATATTGTTGGCTAAG+CGG | - | chr1.3:33290066-33290085 | None:intergenic | 35.0% |
| ! | CATTTTTCCCATATGTCAAG+AGG | - | chr1.3:33290469-33290488 | None:intergenic | 35.0% |
| ! | CTTTCAACTGCCAATTTTTC+TGG | + | chr1.3:33289644-33289663 | MS.gene93336:CDS | 35.0% |
| ! | GAGAGTATGTCTGAAAATTG+TGG | + | chr1.3:33289713-33289732 | MS.gene93336:CDS | 35.0% |
| ! | GGGATTTGCATTGATATTGT+TGG | - | chr1.3:33290074-33290093 | None:intergenic | 35.0% |
| ! | TATGATAATGCTTCAAAGGG+AGG | + | chr1.3:33291664-33291683 | MS.gene93336:CDS | 35.0% |
| ! | TGATGAATCATCTTCCCTTT+TGG | - | chr1.3:33290578-33290597 | None:intergenic | 35.0% |
| ! | TTGAGTCTTTTGCACCAAAA+GGG | + | chr1.3:33290561-33290580 | MS.gene93336:intron | 35.0% |
| ! | TTTGAGAGCTCTAGTTTAGT+AGG | + | chr1.3:33288953-33288972 | MS.gene93336:intron | 35.0% |
| !! | AATGTATTGAAGCGTTGCTT+AGG | + | chr1.3:33291022-33291041 | MS.gene93336:CDS | 35.0% |
| !! | ACCATTTGAGTTGTACTTAC+GGG | + | chr1.3:33292362-33292381 | MS.gene93336:intron | 35.0% |
| !! | ACTGTAACTCGGTGATTTTA+GGG | + | chr1.3:33290803-33290822 | MS.gene93336:intron | 35.0% |
| !! | TTGTTAAGTGTTTGCTGTGT+TGG | + | chr1.3:33290881-33290900 | MS.gene93336:intron | 35.0% |
| AACCGTGGAAGCAAAATGTT+AGG | - | chr1.3:33290251-33290270 | None:intergenic | 40.0% | |
| AACTTTAGGCTTCAGGAACA+GGG | - | chr1.3:33288429-33288448 | None:intergenic | 40.0% | |
| AAGCAATTGATACACTCACC+GGG | - | chr1.3:33292167-33292186 | None:intergenic | 40.0% | |
| AATGACCACTTTGCTTGACA+AGG | + | chr1.3:33291594-33291613 | MS.gene93336:CDS | 40.0% | |
| ACCTACACCATTGGTAAGAA+AGG | - | chr1.3:33292468-33292487 | None:intergenic | 40.0% | |
| AGATAGCATCACACAAGACA+GGG | + | chr1.3:33288241-33288260 | MS.gene93336:CDS | 40.0% | |
| AGGATAACATCCATTGCTTC+AGG | - | chr1.3:33288476-33288495 | None:intergenic | 40.0% | |
| AGGTCTTGAAAGTCTACACT+TGG | + | chr1.3:33290615-33290634 | MS.gene93336:intron | 40.0% | |
| AGTTGACCCTCTTGACATAT+GGG | + | chr1.3:33290459-33290478 | MS.gene93336:intron | 40.0% | |
| ATCCATTGCTTCAGGAAGTT+GGG | - | chr1.3:33288468-33288487 | None:intergenic | 40.0% | |
| ATTAAAGAGCCTACTGTCTG+CGG | + | chr1.3:33287954-33287973 | MS.gene93336:CDS | 40.0% | |
| CAAATCCTTGTCAAGCAAAG+TGG | - | chr1.3:33291602-33291621 | None:intergenic | 40.0% | |
| CAATGGATGTTATCCTTGAG+AGG | + | chr1.3:33288480-33288499 | MS.gene93336:CDS | 40.0% | |
| CCAAATTAATACACTCACCG+GGG | - | chr1.3:33292106-33292125 | None:intergenic | 40.0% | |
| CCTACACCATTGGTAAGAAA+GGG | - | chr1.3:33292467-33292486 | None:intergenic | 40.0% | |
| CTAGGTATGGTTAGAACAAG+TGG | - | chr1.3:33288649-33288668 | None:intergenic | 40.0% | |
| GAAAATTCTTGTAGGCAGGT+AGG | + | chr1.3:33289923-33289942 | MS.gene93336:intron | 40.0% | |
| GAGAAAGGAATGCAGTAAGA+TGG | - | chr1.3:33292422-33292441 | None:intergenic | 40.0% | |
| GAGAAGATTATGCATGGGAA+GGG | + | chr1.3:33291178-33291197 | MS.gene93336:CDS | 40.0% | |
| GCAGAGGAATCATCAGAAAA+TGG | + | chr1.3:33289863-33289882 | MS.gene93336:CDS | 40.0% | |
| GCTTCAGAGAACAGGAAATT+GGG | + | chr1.3:33289158-33289177 | MS.gene93336:CDS | 40.0% | |
| GGTAAAATAAGGGGATAGTG+TGG | + | chr1.3:33290636-33290655 | MS.gene93336:intron | 40.0% | |
| GTGTAGACTTTCAAGACCTT+AGG | - | chr1.3:33290614-33290633 | None:intergenic | 40.0% | |
| GTTATTCCTTCTGATCTCAG+TGG | + | chr1.3:33291115-33291134 | MS.gene93336:CDS | 40.0% | |
| GTTCCTATAGGACTGTAACT+CGG | + | chr1.3:33290792-33290811 | MS.gene93336:intron | 40.0% | |
| TATCGATCGCACTTGTCTAT+TGG | + | chr1.3:33289830-33289849 | MS.gene93336:CDS | 40.0% | |
| TCAAACAAAGAAAGAAGGGC+GGG | - | chr1.3:33289501-33289520 | None:intergenic | 40.0% | |
| TCAAGCAAAGTGGTCATTTC+TGG | - | chr1.3:33291592-33291611 | None:intergenic | 40.0% | |
| TCCCGTAAGTACAACTCAAA+TGG | - | chr1.3:33292366-33292385 | None:intergenic | 40.0% | |
| TCCTTCAAAACAGCTAGGTA+TGG | - | chr1.3:33288662-33288681 | None:intergenic | 40.0% | |
| TGATTCATCATTTGGCACGT+AGG | + | chr1.3:33290588-33290607 | MS.gene93336:intron | 40.0% | |
| ! | AACCTGCAGCCATTTAAAAC+AGG | - | chr1.3:33289022-33289041 | None:intergenic | 40.0% |
| ! | AGAATTTTCTAACAGCCCCA+AGG | - | chr1.3:33289912-33289931 | None:intergenic | 40.0% |
| !! | ACCATACCTAGCTGTTTTGA+AGG | + | chr1.3:33288658-33288677 | MS.gene93336:intron | 40.0% |
| !! | GACTGTAACTCGGTGATTTT+AGG | + | chr1.3:33290802-33290821 | MS.gene93336:intron | 40.0% |
| !! | TCACCTGAAGTCTTGTTGAT+GGG | - | chr1.3:33291777-33291796 | None:intergenic | 40.0% |
| AAAGGCTCAGTAACTTCCAG+TGG | - | chr1.3:33289045-33289064 | None:intergenic | 45.0% | |
| AAGACTTCAGGTGAGTAACG+TGG | + | chr1.3:33291783-33291802 | MS.gene93336:intron | 45.0% | |
| ACACCCATCAACAAGACTTC+AGG | + | chr1.3:33291771-33291790 | MS.gene93336:CDS | 45.0% | |
| ACTGCATGGAAAATCGCTGT+GGG | - | chr1.3:33291695-33291714 | None:intergenic | 45.0% | |
| ACTGGATCTCTGCATTTGGT+TGG | + | chr1.3:33292495-33292514 | MS.gene93336:CDS | 45.0% | |
| ACTGTGAAGGCAGGAACTTT+AGG | - | chr1.3:33288443-33288462 | None:intergenic | 45.0% | |
| AGCAAATAGGCTGAATGCGT+GGG | + | chr1.3:33290727-33290746 | MS.gene93336:intron | 45.0% | |
| AGCAATTGATACACTCACCG+GGG | - | chr1.3:33292166-33292185 | None:intergenic | 45.0% | |
| ATGGTGTAGGTTCTTGTCAC+TGG | + | chr1.3:33292477-33292496 | MS.gene93336:intron | 45.0% | |
| CAGATAGCATCACACAAGAC+AGG | + | chr1.3:33288240-33288259 | MS.gene93336:CDS | 45.0% | |
| CAGTCTCAATCTCTAGATGC+TGG | + | chr1.3:33289136-33289155 | MS.gene93336:CDS | 45.0% | |
| CATCCATTGCTTCAGGAAGT+TGG | - | chr1.3:33288469-33288488 | None:intergenic | 45.0% | |
| CCCCGGTGAGTGTATTAATT+TGG | + | chr1.3:33292103-33292122 | MS.gene93336:intron | 45.0% | |
| CCCTTTCTTACCAATGGTGT+AGG | + | chr1.3:33292464-33292483 | MS.gene93336:intron | 45.0% | |
| CTGAGACCTCCCAGAAAAAT+TGG | - | chr1.3:33289657-33289676 | None:intergenic | 45.0% | |
| GAACTTTAGGCTTCAGGAAC+AGG | - | chr1.3:33288430-33288449 | None:intergenic | 45.0% | |
| GAGTTGACCCTCTTGACATA+TGG | + | chr1.3:33290458-33290477 | MS.gene93336:intron | 45.0% | |
| GCCTTGCTCTCATGTAGAAA+GGG | - | chr1.3:33289890-33289909 | None:intergenic | 45.0% | |
| GCTTGTCCTTCAAAACAGCT+AGG | - | chr1.3:33288667-33288686 | None:intergenic | 45.0% | |
| GGAGAAGATTATGCATGGGA+AGG | + | chr1.3:33291177-33291196 | MS.gene93336:CDS | 45.0% | |
| GGCTTCAGAGAACAGGAAAT+TGG | + | chr1.3:33289157-33289176 | MS.gene93336:CDS | 45.0% | |
| GTCTGCGGCATTACTTCATT+GGG | + | chr1.3:33287969-33287988 | MS.gene93336:CDS | 45.0% | |
| GTGACAAGAACCTACACCAT+TGG | - | chr1.3:33292477-33292496 | None:intergenic | 45.0% | |
| GTTTGGTCTGACTGTCTGAT+AGG | + | chr1.3:33288881-33288900 | MS.gene93336:intron | 45.0% | |
| TAGCAAATAGGCTGAATGCG+TGG | + | chr1.3:33290726-33290745 | MS.gene93336:intron | 45.0% | |
| TCACCGAGTTACAGTCCTAT+AGG | - | chr1.3:33290798-33290817 | None:intergenic | 45.0% | |
| TCAGTGGGATAGACCTATCA+TGG | + | chr1.3:33291131-33291150 | MS.gene93336:CDS | 45.0% | |
| TCCATTGCTTCAGGAAGTTG+GGG | - | chr1.3:33288467-33288486 | None:intergenic | 45.0% | |
| TCCCTTTCTACATGAGAGCA+AGG | + | chr1.3:33289886-33289905 | MS.gene93336:CDS | 45.0% | |
| TCTATCCCACTGAGATCAGA+AGG | - | chr1.3:33291124-33291143 | None:intergenic | 45.0% | |
| TCTGCGGCATTACTTCATTG+GGG | + | chr1.3:33287970-33287989 | MS.gene93336:CDS | 45.0% | |
| TGAGAGCCCTTTCTTACCAA+TGG | + | chr1.3:33292458-33292477 | MS.gene93336:intron | 45.0% | |
| TGCCAGGCATCAACATTGAT+GGG | + | chr1.3:33292206-33292225 | MS.gene93336:intron | 45.0% | |
| TGGTTCTCTAATGCCGCAAA+GGG | + | chr1.3:33289800-33289819 | MS.gene93336:CDS | 45.0% | |
| TGTCACTGGATCTCTGCATT+TGG | + | chr1.3:33292491-33292510 | MS.gene93336:CDS | 45.0% | |
| TGTCTGCGGCATTACTTCAT+TGG | + | chr1.3:33287968-33287987 | MS.gene93336:CDS | 45.0% | |
| TTGACGCAGTTAACGGTGAA+TGG | - | chr1.3:33292081-33292100 | None:intergenic | 45.0% | |
| TTGCCAGGCATCAACATTGA+TGG | + | chr1.3:33292205-33292224 | MS.gene93336:intron | 45.0% | |
| ! | CAACTGCCAATTTTTCTGGG+AGG | + | chr1.3:33289648-33289667 | MS.gene93336:CDS | 45.0% |
| !! | AGTGTTTGCTGTGTTGGTTC+TGG | + | chr1.3:33290887-33290906 | MS.gene93336:intron | 45.0% |
| !! | CTCACCTGAAGTCTTGTTGA+TGG | - | chr1.3:33291778-33291797 | None:intergenic | 45.0% |
| !! | GAAGGTATTACTGCACTGCA+TGG | - | chr1.3:33291709-33291728 | None:intergenic | 45.0% |
| !! | TGAATGCGTGGGGTATCTTT+TGG | + | chr1.3:33290738-33290757 | MS.gene93336:intron | 45.0% |
| !! | TGCCTGTTTTAAATGGCTGC+AGG | + | chr1.3:33289017-33289036 | MS.gene93336:intron | 45.0% |
| !! | TTCATTAAAATAAAAATAAT+TGG | + | chr1.3:33289270-33289289 | MS.gene93336:intron | 5.0% |
| AACAAAGAAAGAAGGGCGGG+TGG | - | chr1.3:33289498-33289517 | None:intergenic | 50.0% | |
| AATCCTGCAGGGGATACTCT+CGG | + | chr1.3:33288216-33288235 | MS.gene93336:intron | 50.0% | |
| ACCCCAACTTCCTGAAGCAA+TGG | + | chr1.3:33288463-33288482 | MS.gene93336:CDS | 50.0% | |
| ACCCCATCAATGTTGATGCC+TGG | - | chr1.3:33292211-33292230 | None:intergenic | 50.0% | |
| AGCTCATAGTCCAGAGAGCA+TGG | + | chr1.3:33289763-33289782 | MS.gene93336:CDS | 50.0% | |
| AGGCAGGAACTTTAGGCTTC+AGG | - | chr1.3:33288436-33288455 | None:intergenic | 50.0% | |
| CACTGCATGGAAAATCGCTG+TGG | - | chr1.3:33291696-33291715 | None:intergenic | 50.0% | |
| CATGGAAAATCGCTGTGGGA+AGG | - | chr1.3:33291691-33291710 | None:intergenic | 50.0% | |
| CGGCATTACTTCATTGGGGA+TGG | + | chr1.3:33287974-33287993 | MS.gene93336:CDS | 50.0% | |
| CGTTAACTGCGTCAAAACCC+CGG | + | chr1.3:33292086-33292105 | MS.gene93336:intron | 50.0% | |
| CTACATGAGAGCAAGGCCTT+GGG | + | chr1.3:33289893-33289912 | MS.gene93336:CDS | 50.0% | |
| CTTCAGGTGAGTAACGTGGA+CGG | + | chr1.3:33291787-33291806 | MS.gene93336:intron | 50.0% | |
| GAAGTAATGCCGCAGACAGT+AGG | - | chr1.3:33287966-33287985 | None:intergenic | 50.0% | |
| GCAAATAGGCTGAATGCGTG+GGG | + | chr1.3:33290728-33290747 | MS.gene93336:intron | 50.0% | |
| GCACATGCATTCACTAACCG+TGG | - | chr1.3:33290266-33290285 | None:intergenic | 50.0% | |
| GCATGGATGCATGTGCAAAG+TGG | + | chr1.3:33289780-33289799 | MS.gene93336:CDS | 50.0% | |
| GCCAGGCATCAACATTGATG+GGG | + | chr1.3:33292207-33292226 | MS.gene93336:intron | 50.0% | |
| GGATAGGCAGCAGTTCCTAT+AGG | + | chr1.3:33290780-33290799 | MS.gene93336:intron | 50.0% | |
| GGCCTTGCTCTCATGTAGAA+AGG | - | chr1.3:33289891-33289910 | None:intergenic | 50.0% | |
| GTGAATGCATGTGCTTCGTC+AGG | + | chr1.3:33290272-33290291 | MS.gene93336:CDS | 50.0% | |
| GTGGTTCTCTAATGCCGCAA+AGG | + | chr1.3:33289799-33289818 | MS.gene93336:CDS | 50.0% | |
| TAAATGGCTGCAGGTTCCAC+TGG | + | chr1.3:33289026-33289045 | MS.gene93336:intron | 50.0% | |
| TACATGAGAGCAAGGCCTTG+GGG | + | chr1.3:33289894-33289913 | MS.gene93336:CDS | 50.0% | |
| TATTTGATATGCTGGGGCGC+AGG | - | chr1.3:33292330-33292349 | None:intergenic | 50.0% | |
| TCATTTGGCACGTAGGCCTA+AGG | + | chr1.3:33290595-33290614 | MS.gene93336:intron | 50.0% | |
| TCTACATGAGAGCAAGGCCT+TGG | + | chr1.3:33289892-33289911 | MS.gene93336:CDS | 50.0% | |
| TGAGAGGGCCAAAGAACTCA+TGG | + | chr1.3:33288496-33288515 | MS.gene93336:CDS | 50.0% | |
| TGAGTTCTTTGGCCCTCTCA+AGG | - | chr1.3:33288496-33288515 | None:intergenic | 50.0% | |
| TGGCAATACGACTCAGGAGA+AGG | - | chr1.3:33292191-33292210 | None:intergenic | 50.0% | |
| TTCAGGTGAGTAACGTGGAC+GGG | + | chr1.3:33291788-33291807 | MS.gene93336:intron | 50.0% | |
| TTCTCCTGAGTCGTATTGCC+AGG | + | chr1.3:33292190-33292209 | MS.gene93336:intron | 50.0% | |
| ! | AAAACAATGGCGGGGAGAAG+AGG | - | chr1.3:33288378-33288397 | None:intergenic | 50.0% |
| !! | AGATGCTGGCTTCAGAGAAC+AGG | + | chr1.3:33289150-33289169 | MS.gene93336:CDS | 50.0% |
| !! | AGGAAGTTGGGGTACTGTGA+AGG | - | chr1.3:33288456-33288475 | None:intergenic | 50.0% |
| !! | CGGGGTTTTGACGCAGTTAA+CGG | - | chr1.3:33292088-33292107 | None:intergenic | 50.0% |
| !! | GGCGGGTGGACTATTCTTTA+AGG | - | chr1.3:33289484-33289503 | None:intergenic | 50.0% |
| !! | GGTCCCTCGTTTTGAACTCA+TGG | + | chr1.3:33288559-33288578 | MS.gene93336:intron | 50.0% |
| GATGCCTGGCAATACGACTC+AGG | - | chr1.3:33292197-33292216 | None:intergenic | 55.0% | |
| GCACATGCATCCATGCTCTC+TGG | - | chr1.3:33289776-33289795 | None:intergenic | 55.0% | |
| !! | AGTTGGGGTACTGTGAAGGC+AGG | - | chr1.3:33288452-33288471 | None:intergenic | 55.0% |
| !! | TGTCCGAGAGTATCCCCTGC+AGG | - | chr1.3:33288222-33288241 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 33287942 | 33292545 | 33287942 | ID=MS.gene93336 |
| chr1.3 | mRNA | 33287942 | 33292545 | 33287942 | ID=MS.gene93336.t1;Parent=MS.gene93336 |
| chr1.3 | exon | 33287942 | 33288014 | 33287942 | ID=MS.gene93336.t1.exon1;Parent=MS.gene93336.t1 |
| chr1.3 | CDS | 33287942 | 33288014 | 33287942 | ID=cds.MS.gene93336.t1;Parent=MS.gene93336.t1 |
| chr1.3 | exon | 33288226 | 33288272 | 33288226 | ID=MS.gene93336.t1.exon2;Parent=MS.gene93336.t1 |
| chr1.3 | CDS | 33288226 | 33288272 | 33288226 | ID=cds.MS.gene93336.t1;Parent=MS.gene93336.t1 |
| chr1.3 | exon | 33288440 | 33288517 | 33288440 | ID=MS.gene93336.t1.exon3;Parent=MS.gene93336.t1 |
| chr1.3 | CDS | 33288440 | 33288517 | 33288440 | ID=cds.MS.gene93336.t1;Parent=MS.gene93336.t1 |
| chr1.3 | exon | 33289039 | 33289197 | 33289039 | ID=MS.gene93336.t1.exon4;Parent=MS.gene93336.t1 |
| chr1.3 | CDS | 33289039 | 33289197 | 33289039 | ID=cds.MS.gene93336.t1;Parent=MS.gene93336.t1 |
| chr1.3 | exon | 33289602 | 33289940 | 33289602 | ID=MS.gene93336.t1.exon5;Parent=MS.gene93336.t1 |
| chr1.3 | CDS | 33289602 | 33289940 | 33289602 | ID=cds.MS.gene93336.t1;Parent=MS.gene93336.t1 |
| chr1.3 | exon | 33290215 | 33290316 | 33290215 | ID=MS.gene93336.t1.exon6;Parent=MS.gene93336.t1 |
| chr1.3 | CDS | 33290215 | 33290316 | 33290215 | ID=cds.MS.gene93336.t1;Parent=MS.gene93336.t1 |
| chr1.3 | exon | 33291013 | 33291199 | 33291013 | ID=MS.gene93336.t1.exon7;Parent=MS.gene93336.t1 |
| chr1.3 | CDS | 33291013 | 33291199 | 33291013 | ID=cds.MS.gene93336.t1;Parent=MS.gene93336.t1 |
| chr1.3 | exon | 33291593 | 33291792 | 33291593 | ID=MS.gene93336.t1.exon8;Parent=MS.gene93336.t1 |
| chr1.3 | CDS | 33291593 | 33291792 | 33291593 | ID=cds.MS.gene93336.t1;Parent=MS.gene93336.t1 |
| chr1.3 | exon | 33292486 | 33292545 | 33292486 | ID=MS.gene93336.t1.exon9;Parent=MS.gene93336.t1 |
| chr1.3 | CDS | 33292486 | 33292545 | 33292486 | ID=cds.MS.gene93336.t1;Parent=MS.gene93336.t1 |
| Gene Sequence |
| Protein sequence |
