AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93360

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93360.t1 MTR_3g435480 86.081 467 35 4 1 439 1 465 0.0 808
MS.gene93360.t1 MTR_4g082060 43.002 493 199 21 1 439 1 465 4.12e-101 309
MS.gene93360.t1 MTR_6g012450 41.454 509 214 16 1 439 1 495 2.48e-99 306
MS.gene93360.t1 MTR_7g010950 42.633 509 199 17 1 439 1 486 6.34e-95 294
MS.gene93360.t1 MTR_8g044220 34.310 478 224 19 3 438 9 438 1.16e-59 201
MS.gene93360.t1 MTR_5g041400 39.595 346 100 12 104 437 113 361 1.31e-57 194
MS.gene93360.t1 MTR_5g041380 35.000 420 155 15 30 437 56 369 1.73e-56 191
MS.gene93360.t1 MTR_5g041530 35.749 414 163 16 31 437 62 379 8.80e-56 189
MS.gene93360.t1 MTR_7g086780 32.489 474 231 16 1 438 1 421 4.17e-51 178
MS.gene93360.t1 MTR_6g027460 33.127 323 153 10 4 314 9 280 2.09e-39 145
MS.gene93360.t1 MTR_5g041420 46.053 152 73 3 28 174 60 207 2.45e-39 144
MS.gene93360.t1 MTR_6g027450 33.148 359 175 14 2 331 7 329 2.32e-37 139
MS.gene93360.t1 MTR_2g016030 78.333 60 13 0 104 163 41 100 7.79e-31 116
MS.gene93360.t1 MTR_8g079060 56.322 87 34 2 110 196 29 111 5.45e-28 111
MS.gene93360.t1 MTR_3g091820 66.154 65 22 0 99 163 32 96 2.61e-26 108
MS.gene93360.t1 MTR_2g093220 69.697 66 19 1 99 163 28 93 6.29e-26 107
MS.gene93360.t1 MTR_8g027295 69.492 59 18 0 105 163 19 77 7.63e-26 106
MS.gene93360.t1 MTR_1g077600 45.946 111 54 3 104 214 37 141 1.66e-24 102
MS.gene93360.t1 MTR_1g077600 45.946 111 54 3 104 214 37 141 2.28e-24 102
MS.gene93360.t1 MTR_8g479350 67.797 59 19 0 110 168 68 126 5.08e-24 102
MS.gene93360.t1 MTR_4g088580 76.923 52 12 0 112 163 57 108 5.81e-24 103
MS.gene93360.t1 MTR_4g461080 67.692 65 20 1 99 162 17 81 7.26e-24 100
MS.gene93360.t1 MTR_4g022370 59.091 66 27 0 98 163 70 135 8.48e-24 102
MS.gene93360.t1 MTR_1g056810 66.129 62 20 1 112 172 14 75 1.02e-23 100
MS.gene93360.t1 MTR_3g090430 73.077 52 14 0 112 163 53 104 1.44e-23 101
MS.gene93360.t1 MTR_3g077750 66.129 62 20 1 100 160 50 111 1.91e-23 100
MS.gene93360.t1 MTR_2g096740 70.370 54 16 0 110 163 62 115 2.83e-23 99.4
MS.gene93360.t1 MTR_2g096740 70.370 54 16 0 110 163 77 130 3.02e-23 99.8
MS.gene93360.t1 MTR_4g063780 59.722 72 28 1 98 168 63 134 4.99e-23 99.8
MS.gene93360.t1 MTR_2g059540 75.510 49 12 0 110 158 31 79 9.27e-23 95.9
MS.gene93360.t1 MTR_8g015840 64.516 62 22 0 110 171 20 81 9.69e-23 96.3
MS.gene93360.t1 MTR_4g089095 68.519 54 17 0 110 163 50 103 1.75e-22 97.4
MS.gene93360.t1 MTR_2g014170 75.510 49 12 0 110 158 45 93 1.79e-22 97.8
MS.gene93360.t1 MTR_4g089095 68.519 54 17 0 110 163 16 69 2.55e-22 96.3
MS.gene93360.t1 MTR_2g013370 75.000 52 12 1 112 163 48 98 3.99e-22 95.9
MS.gene93360.t1 MTR_8g068210 48.810 84 36 1 80 163 9 85 4.41e-22 97.1
MS.gene93360.t1 MTR_2g014060 72.000 50 14 0 112 161 27 76 4.42e-22 97.1
MS.gene93360.t1 MTR_4g109980 67.925 53 17 0 108 160 38 90 5.02e-22 96.7
MS.gene93360.t1 MTR_7g059400 57.576 66 28 0 98 163 64 129 5.60e-22 97.1
MS.gene93360.t1 MTR_7g024670 72.549 51 14 0 112 162 79 129 5.85e-22 97.4
MS.gene93360.t1 MTR_5g031440 47.826 92 34 2 83 160 2 93 8.26e-22 96.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93360.t1 AT3G47500 48.188 469 187 17 1 437 2 446 1.74e-110 333
MS.gene93360.t1 AT5G62430 42.889 443 100 17 1 437 1 296 1.01e-83 259
MS.gene93360.t1 AT5G39660 40.141 426 188 15 39 439 74 457 4.28e-83 263
MS.gene93360.t1 AT5G39660 40.141 426 188 15 39 439 74 457 4.28e-83 263
MS.gene93360.t1 AT5G39660 40.141 426 188 15 39 439 74 457 4.28e-83 263
MS.gene93360.t1 AT1G69570 32.917 480 196 19 1 438 1 396 9.48e-51 177
MS.gene93360.t1 AT1G26790 33.333 363 168 13 78 437 79 370 3.45e-43 155
MS.gene93360.t1 AT1G29160 80.000 60 12 0 104 163 56 115 2.53e-32 121
MS.gene93360.t1 AT2G34140 56.122 98 37 2 72 163 14 111 1.01e-31 119
MS.gene93360.t1 AT5G60200 50.000 104 50 1 106 207 51 154 4.95e-27 109
MS.gene93360.t1 AT3G61850 65.079 63 22 0 105 167 57 119 2.76e-25 105
MS.gene93360.t1 AT3G61850 65.079 63 22 0 105 167 57 119 2.76e-25 105
MS.gene93360.t1 AT3G61850 65.079 63 22 0 105 167 69 131 2.87e-25 105
MS.gene93360.t1 AT4G24060 62.121 66 25 0 98 163 41 106 3.26e-25 106
MS.gene93360.t1 AT3G61850 65.079 63 22 0 105 167 57 119 3.78e-25 105
MS.gene93360.t1 AT3G50410 71.930 57 16 0 110 166 30 86 3.84e-25 103
MS.gene93360.t1 AT2G28510 71.186 59 17 0 112 170 50 108 3.94e-25 104
MS.gene93360.t1 AT3G61850 65.079 63 22 0 105 167 69 131 4.23e-25 105
MS.gene93360.t1 AT3G45610 61.905 63 24 0 106 168 36 98 5.65e-25 103
MS.gene93360.t1 AT2G28810 65.574 61 21 0 101 161 68 128 2.29e-24 103
MS.gene93360.t1 AT2G28810 65.574 61 21 0 101 161 85 145 3.32e-24 103
MS.gene93360.t1 AT1G51700 57.333 75 28 1 110 180 33 107 3.67e-24 99.8
MS.gene93360.t1 AT1G28310 74.074 54 14 0 110 163 27 80 4.37e-24 102
MS.gene93360.t1 AT1G28310 74.074 54 14 0 110 163 51 104 7.18e-24 102
MS.gene93360.t1 AT4G00940 67.797 59 19 0 105 163 63 121 1.10e-23 100
MS.gene93360.t1 AT4G00940 67.797 59 19 0 105 163 63 121 1.10e-23 100
MS.gene93360.t1 AT4G00940 67.797 59 19 0 105 163 63 121 1.10e-23 100
MS.gene93360.t1 AT1G21340 62.295 61 22 1 112 171 40 100 1.30e-23 99.8
MS.gene93360.t1 AT3G55370 55.714 70 31 0 106 175 72 141 1.34e-23 101
MS.gene93360.t1 AT3G55370 55.714 70 31 0 106 175 72 141 1.40e-23 101
MS.gene93360.t1 AT3G21270 73.585 53 14 0 110 162 29 81 1.49e-23 98.2
MS.gene93360.t1 AT5G60850 62.121 66 25 0 98 163 39 104 1.50e-23 100
MS.gene93360.t1 AT1G47655 77.551 49 11 0 110 158 29 77 1.69e-23 98.2
MS.gene93360.t1 AT3G55370 55.714 70 31 0 106 175 117 186 1.98e-23 101
MS.gene93360.t1 AT2G37590 57.576 66 28 0 98 163 77 142 2.20e-23 100
MS.gene93360.t1 AT1G07640 71.698 53 15 0 110 162 21 73 2.21e-23 99.8
MS.gene93360.t1 AT1G07640 71.698 53 15 0 110 162 77 129 2.59e-23 100
MS.gene93360.t1 AT3G52440 68.421 57 18 0 112 168 27 83 2.91e-23 98.6
MS.gene93360.t1 AT1G64620 50.602 83 41 0 76 158 15 97 3.19e-23 100
MS.gene93360.t1 AT1G07640 71.698 53 15 0 110 162 85 137 3.23e-23 100
MS.gene93360.t1 AT3G52440 68.421 57 18 0 112 168 46 102 3.49e-23 99.0
MS.gene93360.t1 AT2G46590 69.811 53 16 0 105 157 63 115 5.06e-23 100
MS.gene93360.t1 AT2G46590 69.811 53 16 0 105 157 75 127 6.06e-23 100
MS.gene93360.t1 AT5G65590 70.370 54 16 0 110 163 41 94 8.25e-23 99.0
MS.gene93360.t1 AT5G66940 61.667 60 23 0 110 169 32 91 1.02e-22 96.7
MS.gene93360.t1 AT5G02460 59.091 66 27 0 98 163 83 148 2.03e-22 99.0
MS.gene93360.t1 AT5G62940 73.469 49 13 0 112 160 75 123 1.79e-21 95.9
MS.gene93360.t1 AT4G21050 57.971 69 29 0 95 163 9 77 2.28e-21 92.4
MS.gene93360.t1 AT4G38000 64.286 56 19 1 109 164 40 94 7.57e-21 91.7
MS.gene93360.t1 AT4G21040 63.462 52 19 0 112 163 27 78 1.58e-18 84.7
MS.gene93360.t1 AT4G21080 61.538 52 20 0 112 163 27 78 9.60e-18 82.8
MS.gene93360.t1 AT4G21030 59.091 44 18 0 112 155 23 66 1.38e-11 63.9

Find 93 sgRNAs with CRISPR-Local

Find 163 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAATGTTCCTTGGTTTC+CGG 0.171508 3.2:-26746322 MS.gene93360:CDS
GAGGAATGAAACCATTATTT+TGG 0.182167 3.2:+26746460 None:intergenic
ACACATCCATTTCTTTGTTT+TGG 0.257358 3.2:+26746174 None:intergenic
GAATAGGGGTGGTATGATTA+AGG 0.274373 3.2:-26746061 MS.gene93360:CDS
TCAGCATCTTTATCTGCTTC+AGG 0.276517 3.2:+26747152 None:intergenic
GCAAGGCGTGTCAAAGATAT+TGG 0.279470 3.2:-26746842 MS.gene93360:CDS
AAGCTGCAAAGAGTTCAATT+TGG 0.294104 3.2:-26746113 MS.gene93360:CDS
GAACTCTTTGCAGCTTCATT+TGG 0.306321 3.2:+26746120 None:intergenic
TCTCAATCCTGCGGAGAAAA+AGG 0.308287 3.2:-26746595 MS.gene93360:CDS
TTCCCGAGTGTTGGAGATTT+CGG 0.311244 3.2:+26746267 None:intergenic
TAAGAATGAAGGTTTGAATA+GGG 0.329266 3.2:-26746076 MS.gene93360:CDS
GCAAGAATTGTTTCTCCTAA+TGG 0.336437 3.2:-26746708 MS.gene93360:CDS
GTGCTCCTTGGCCTTATACT+TGG 0.364975 3.2:-26746419 MS.gene93360:CDS
CTCAACGACACTCGAAATAA+TGG 0.366706 3.2:-26746570 MS.gene93360:CDS
AGCTGCAAAGAGTTCAATTT+GGG 0.368742 3.2:-26746112 MS.gene93360:CDS
GCGCCGGAACTCCAAGTATA+AGG 0.369585 3.2:+26746408 None:intergenic
TTAAGAATGAAGGTTTGAAT+AGG 0.377391 3.2:-26746077 MS.gene93360:CDS
TGAAGATGATGAGTACCATT+AGG 0.379458 3.2:+26746693 None:intergenic
GTGATTCTTCTGTTTGCAAA+TGG 0.382048 3.2:+26746196 None:intergenic
TTCTTGATCTCTGCGGCATC+TGG 0.383443 3.2:+26747104 None:intergenic
AATGGTAGAGTCCTCAGCTT+TGG 0.387317 3.2:-26746657 MS.gene93360:CDS
GCCACAAACTTTGTGTCCTC+CGG 0.388135 3.2:-26746376 MS.gene93360:CDS
GAAGTTTCTTCATCAATAGA+AGG 0.395786 3.2:+26747032 None:intergenic
AACCAAGGAACATTCCAAAA+AGG 0.400329 3.2:+26746327 None:intergenic
TGGCCTTATACTTGGAGTTC+CGG 0.405276 3.2:-26746411 MS.gene93360:CDS
GCGCTGTTGCAGCGTGGACA+CGG 0.414640 3.2:+26746921 None:intergenic
AGAAATGTTCCGGTCGGTGC+AGG 0.415448 3.2:-26746801 MS.gene93360:CDS
TCATTGCCAAGCCAAAATAA+TGG 0.419166 3.2:-26746471 MS.gene93360:CDS
TCAAACCTCTCCAATGTTGA+TGG 0.423970 3.2:-26746004 MS.gene93360:CDS
ATGGTAGAGTCCTCAGCTTT+GGG 0.430451 3.2:-26746656 MS.gene93360:CDS
GAATCACCAAAACAAAGAAA+TGG 0.432133 3.2:-26746180 MS.gene93360:CDS
TTCTTATTTAAGAGTTCTCA+TGG 0.441058 3.2:+26745947 None:intergenic
CATGTATGACTAGTGCTCCT+TGG 0.447113 3.2:-26746431 MS.gene93360:CDS
ATCTCTGCGGCATCTGGTGG+AGG 0.457276 3.2:+26747110 None:intergenic
CGGAACCATGAGAAATGTTC+CGG 0.463308 3.2:-26746811 MS.gene93360:CDS
ACACTTGGAATTAAGAATGA+AGG 0.464706 3.2:-26746087 MS.gene93360:CDS
CTCGAGTGTTTCCCGAGTGT+TGG 0.475061 3.2:+26746258 None:intergenic
GGAGATTTCGGACTAGACTT+TGG 0.480630 3.2:+26746279 None:intergenic
AGTGATCTAGCTAAAGCTGC+AGG 0.482293 3.2:+26745976 None:intergenic
CCCGGAGGACACAAAGTTTG+TGG 0.488796 3.2:+26746375 None:intergenic
AACAATTCAGCAGCAACATT+GGG 0.489579 3.2:-26747074 MS.gene93360:CDS
TTAAAATCTATGGAGGAAAG+TGG 0.493259 3.2:-26746513 MS.gene93360:CDS
CCACAAACTTTGTGTCCTCC+GGG 0.498260 3.2:-26746375 MS.gene93360:CDS
TTTCTTCTCCCTGCACCGAC+CGG 0.507717 3.2:+26746792 None:intergenic
AGTTCAATTTGGGAAACACT+TGG 0.509045 3.2:-26746102 MS.gene93360:CDS
TTGATCTCTGCGGCATCTGG+TGG 0.510926 3.2:+26747107 None:intergenic
TAGAGTCCTCAGCTTTGGGT+TGG 0.513593 3.2:-26746652 MS.gene93360:CDS
CGCTGTTGCAGCGTGGACAC+GGG 0.514091 3.2:+26746922 None:intergenic
TGTCAAAGATATTGGACTGC+AGG 0.515747 3.2:-26746834 MS.gene93360:CDS
GGACACGGGAGTAATTTGTC+TGG 0.517983 3.2:+26746936 None:intergenic
CAACAATTCAGCAGCAACAT+TGG 0.525068 3.2:-26747075 MS.gene93360:CDS
CTTCAAAATTTGAAAACCAA+TGG 0.530626 3.2:-26746675 MS.gene93360:CDS
CTAGACTTTGGAGTTGCCGC+GGG 0.539161 3.2:+26746291 None:intergenic
AAGAATGAAGGTTTGAATAG+GGG 0.550009 3.2:-26746075 MS.gene93360:CDS
AAAGCTGAGGACTCTACCAT+TGG 0.551075 3.2:+26746659 None:intergenic
GGACACAAAGTTTGTGGCGA+GGG 0.556620 3.2:+26746381 None:intergenic
TTGTGGCGAGGGAATTGCGC+CGG 0.571745 3.2:+26746392 None:intergenic
TAAAATGACATGGGAAATCC+CGG 0.575941 3.2:+26746357 None:intergenic
CAACACTCGGGAAACACTCG+AGG 0.576028 3.2:-26746257 MS.gene93360:CDS
GAACTCCAAGTATAAGGCCA+AGG 0.577392 3.2:+26746414 None:intergenic
CAAGGAGCACTAGTCATACA+TGG 0.583891 3.2:+26746432 None:intergenic
GCAGGGTTAGCCATCAACAT+TGG 0.587131 3.2:+26745994 None:intergenic
GACAATGAATCATAGATATG+TGG 0.589586 3.2:+26746624 None:intergenic
AGGAGCAGGGTAAAATGACA+TGG 0.595195 3.2:+26746347 None:intergenic
AGTCCGAAATCTCCAACACT+CGG 0.595742 3.2:-26746270 MS.gene93360:CDS
GTTGCCGCGGGAGTATGAGC+CGG 0.602191 3.2:+26746303 None:intergenic
ACCGACCGGAACATTTCTCA+TGG 0.607090 3.2:+26746806 None:intergenic
ATAAGACCTTCACCTTCCCC+AGG 0.607317 3.2:+26748597 None:intergenic
CAAAGATATTGGACTGCAGG+CGG 0.608252 3.2:-26746831 MS.gene93360:CDS
AATGAAGGTTTGAATAGGGG+TGG 0.610382 3.2:-26746072 MS.gene93360:CDS
ACTAGACTTTGGAGTTGCCG+CGG 0.610727 3.2:+26746290 None:intergenic
GAAATGTTCCGGTCGGTGCA+GGG 0.612559 3.2:-26746800 MS.gene93360:CDS
GGAGTATGAGCCGGAAACCA+AGG 0.614213 3.2:+26746312 None:intergenic
GTCCGAAATCTCCAACACTC+GGG 0.615508 3.2:-26746269 MS.gene93360:CDS
TGCATCAAGAGCCTCAGAGA+TGG 0.626336 3.2:+26746731 None:intergenic
GTTAGCCATCAACATTGGAG+AGG 0.627108 3.2:+26745999 None:intergenic
GTGATCTAGCTAAAGCTGCA+GGG 0.636623 3.2:+26745977 None:intergenic
CTAGTCATACATGGAACTTG+AGG 0.637687 3.2:+26746441 None:intergenic
ACATTGGAGAGGTTTGAACA+TGG 0.639471 3.2:+26746010 None:intergenic
GTCAAATGATCTCAATCCTG+CGG 0.646844 3.2:-26746604 MS.gene93360:CDS
AGGACACAAAGTTTGTGGCG+AGG 0.653889 3.2:+26746380 None:intergenic
ACCATGAGAAATGTTCCGGT+CGG 0.654901 3.2:-26746807 MS.gene93360:CDS
GAGCCTCAGAGATGGTGATG+TGG 0.657067 3.2:+26746739 None:intergenic
TGAAGGTCTTATGATTGCTG+CGG 0.668448 3.2:-26748586 MS.gene93360:CDS
GATGATCCAACCCAAAGCTG+AGG 0.671324 3.2:+26746646 None:intergenic
AACACTCGGGAAACACTCGA+GGG 0.674943 3.2:-26746256 MS.gene93360:CDS
GTTGTCGTTCTTGATCTCTG+CGG 0.679992 3.2:+26747097 None:intergenic
GGAGCAGGGTAAAATGACAT+GGG 0.680900 3.2:+26746348 None:intergenic
TCGCCACATCACCATCTCTG+AGG 0.699550 3.2:-26746742 MS.gene93360:CDS
GTTTCCGGCTCATACTCCCG+CGG 0.700610 3.2:-26746307 MS.gene93360:CDS
GTGTCCGCGCTGTTGCAGCG+TGG 0.703298 3.2:+26746915 None:intergenic
GTGTCCACGCTGCAACAGCG+CGG 0.758797 3.2:-26746919 MS.gene93360:CDS
AATGACATGGGAAATCCCGG+AGG 0.775230 3.2:+26746360 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATAGAAAAATTTGTAAAAA+AGG + chr3.2:26746515-26746534 None:intergenic 10.0%
!!! TTTTTACAAATTTTTCTATA+TGG - chr3.2:26746515-26746534 MS.gene93360:CDS 10.0%
!! AATTAAATAAATTTGAGCAT+AGG - chr3.2:26746467-26746486 MS.gene93360:CDS 15.0%
!! ATTAAATAAATTTGAGCATA+GGG - chr3.2:26746468-26746487 MS.gene93360:CDS 15.0%
!!! TGATACAATTTTAAAATCTA+TGG - chr3.2:26748082-26748101 MS.gene93360:intron 15.0%
!!! TTGATTTATTTTTGATGTTT+TGG - chr3.2:26746787-26746806 MS.gene93360:CDS 15.0%
!!! TTTCAATTTTTATATGAAGT+TGG - chr3.2:26746743-26746762 MS.gene93360:CDS 15.0%
!! AAAAATTGAAAATTCCCTAA+GGG + chr3.2:26746571-26746590 None:intergenic 20.0%
!! AAACATTGTGTCAAATTAAT+AGG - chr3.2:26747428-26747447 MS.gene93360:intron 20.0%
!! AATATATATTGCATCAATTG+AGG + chr3.2:26747035-26747054 None:intergenic 20.0%
!! ATATTGTCTCAAATAATTAG+CGG - chr3.2:26747350-26747369 MS.gene93360:intron 20.0%
!! GATTATAAACAAAAAGACTT+AGG + chr3.2:26746965-26746984 None:intergenic 20.0%
!! TAAAAATTGAAAATTCCCTA+AGG + chr3.2:26746572-26746591 None:intergenic 20.0%
!! TGTTTGTATGATCTTATTAT+AGG - chr3.2:26746404-26746423 MS.gene93360:CDS 20.0%
!!! ACTAAAGATTTTTATGAGTA+AGG - chr3.2:26746197-26746216 MS.gene93360:CDS 20.0%
!!! ATTTTTATATGAAGTTGGTA+AGG - chr3.2:26746748-26746767 MS.gene93360:CDS 20.0%
!!! TACAATTTTAAAATCTATGG+AGG - chr3.2:26748085-26748104 MS.gene93360:intron 20.0%
! AAAATTGAAAATTCCCTAAG+GGG + chr3.2:26746570-26746589 None:intergenic 25.0%
! ATTGAAAAAGTCAATACGAT+TGG - chr3.2:26746341-26746360 MS.gene93360:CDS 25.0%
! CTTCAAAATTTGAAAACCAA+TGG - chr3.2:26747930-26747949 MS.gene93360:intron 25.0%
! TAAGAATGAAGGTTTGAATA+GGG - chr3.2:26748529-26748548 MS.gene93360:intron 25.0%
! TTAAGAATGAAGGTTTGAAT+AGG - chr3.2:26748528-26748547 MS.gene93360:intron 25.0%
! TTCAGATTTGGAAAAATGTT+TGG - chr3.2:26747275-26747294 MS.gene93360:intron 25.0%
! TTTAGTAACTCATATGAGTT+AGG + chr3.2:26747094-26747113 None:intergenic 25.0%
!! TCATCAATTCTCAATGTTTT+AGG + chr3.2:26748464-26748483 None:intergenic 25.0%
!! TTGCAATTTTTACATGAAGT+TGG - chr3.2:26746709-26746728 MS.gene93360:CDS 25.0%
AAATTATGCACTTATGCTCT+TGG - chr3.2:26747235-26747254 MS.gene93360:intron 30.0%
AACAAATAGATAGATACTCG+TGG + chr3.2:26746315-26746334 None:intergenic 30.0%
AAGAATGAAGGTTTGAATAG+GGG - chr3.2:26748530-26748549 MS.gene93360:intron 30.0%
ACAAGAAGAACATCAAGAAA+AGG + chr3.2:26747180-26747199 None:intergenic 30.0%
ACACTTGGAATTAAGAATGA+AGG - chr3.2:26748518-26748537 MS.gene93360:intron 30.0%
ATCGTGCATATTTGATATCA+CGG - chr3.2:26746240-26746259 MS.gene93360:CDS 30.0%
GAAGTTTCTTCATCAATAGA+AGG + chr3.2:26747576-26747595 None:intergenic 30.0%
GAATCACCAAAACAAAGAAA+TGG - chr3.2:26748425-26748444 MS.gene93360:intron 30.0%
GACAATGAATCATAGATATG+TGG + chr3.2:26747984-26748003 None:intergenic 30.0%
TAAATTTGAGCATAGGGTAA+TGG - chr3.2:26746474-26746493 MS.gene93360:CDS 30.0%
TCCCAAAAAGCTTAATTTCA+GGG + chr3.2:26745974-26745993 None:intergenic 30.0%
TTAAAATCTATGGAGGAAAG+TGG - chr3.2:26748092-26748111 MS.gene93360:intron 30.0%
TTAATGATGAACATGAGACA+CGG + chr3.2:26747398-26747417 None:intergenic 30.0%
TTCCCAAAAAGCTTAATTTC+AGG + chr3.2:26745975-26745994 None:intergenic 30.0%
! ACCCTGAAATTAAGCTTTTT+GGG - chr3.2:26745970-26745989 MS.gene93360:CDS 30.0%
! GAGGAATGAAACCATTATTT+TGG + chr3.2:26748148-26748167 None:intergenic 30.0%
! GCTTTTCAATCAAAGAAAGA+TGG - chr3.2:26748566-26748585 MS.gene93360:intron 30.0%
! TGTATCACTTTGTTCGTTTT+CGG + chr3.2:26747604-26747623 None:intergenic 30.0%
!! ACACATCCATTTCTTTGTTT+TGG + chr3.2:26748434-26748453 None:intergenic 30.0%
!!! ATGAAACCATTATTTTGGCT+TGG + chr3.2:26748143-26748162 None:intergenic 30.0%
!!! TCATCAATAGAAGGTGTTTT+CGG + chr3.2:26747567-26747586 None:intergenic 30.0%
AACAATTCAGCAGCAACATT+GGG - chr3.2:26747531-26747550 MS.gene93360:intron 35.0%
AACCAAGGAACATTCCAAAA+AGG + chr3.2:26748281-26748300 None:intergenic 35.0%
AAGCTGCAAAGAGTTCAATT+TGG - chr3.2:26748492-26748511 MS.gene93360:intron 35.0%
AGCTGCAAAGAGTTCAATTT+GGG - chr3.2:26748493-26748512 MS.gene93360:intron 35.0%
AGTTCAATTTGGGAAACACT+TGG - chr3.2:26748503-26748522 MS.gene93360:intron 35.0%
GTGATTCTTCTGTTTGCAAA+TGG + chr3.2:26748412-26748431 None:intergenic 35.0%
TAAAATGACATGGGAAATCC+CGG + chr3.2:26748251-26748270 None:intergenic 35.0%
TCAAAAATACTGAGACAGCA+GGG - chr3.2:26746866-26746885 MS.gene93360:CDS 35.0%
TCATTGCCAAGCCAAAATAA+TGG - chr3.2:26748134-26748153 MS.gene93360:intron 35.0%
TGAAGAAGAAGAAATCGAGA+AGG - chr3.2:26746121-26746140 MS.gene93360:CDS 35.0%
TGAAGATGATGAGTACCATT+AGG + chr3.2:26747915-26747934 None:intergenic 35.0%
TTCTACTGTATAGTGCTCAT+AGG + chr3.2:26746928-26746947 None:intergenic 35.0%
! AACTATTGTATGTGTCACTG+TGG + chr3.2:26747316-26747335 None:intergenic 35.0%
! GAAGAAGATTCTTTTTCCTG+GGG - chr3.2:26745992-26746011 MS.gene93360:CDS 35.0%
! GACCCTGAAATTAAGCTTTT+TGG - chr3.2:26745969-26745988 MS.gene93360:CDS 35.0%
! GCAAGAATTGTTTCTCCTAA+TGG - chr3.2:26747897-26747916 MS.gene93360:intron 35.0%
! GGAAGAAGATTCTTTTTCCT+GGG - chr3.2:26745991-26746010 MS.gene93360:CDS 35.0%
!! GTTCTGAAATTTACCCCTTA+GGG - chr3.2:26746554-26746573 MS.gene93360:CDS 35.0%
!! TGTTCTGAAATTTACCCCTT+AGG - chr3.2:26746553-26746572 MS.gene93360:CDS 35.0%
!!! CATCAATAGAAGGTGTTTTC+GGG + chr3.2:26747566-26747585 None:intergenic 35.0%
AATGAAGGTTTGAATAGGGG+TGG - chr3.2:26748533-26748552 MS.gene93360:intron 40.0%
ACATTGGAGAGGTTTGAACA+TGG + chr3.2:26748598-26748617 None:intergenic 40.0%
ACTGTATAGTGCTCATAGGA+AGG + chr3.2:26746924-26746943 None:intergenic 40.0%
ACTTATGCTCTTGGATATGC+AGG - chr3.2:26747244-26747263 MS.gene93360:intron 40.0%
CAACAATTCAGCAGCAACAT+TGG - chr3.2:26747530-26747549 MS.gene93360:intron 40.0%
CAGGACTGATACTTCAGATT+TGG - chr3.2:26747263-26747282 MS.gene93360:intron 40.0%
CTAGTCATACATGGAACTTG+AGG + chr3.2:26748167-26748186 None:intergenic 40.0%
CTCAACGACACTCGAAATAA+TGG - chr3.2:26748035-26748054 MS.gene93360:intron 40.0%
GAACATTCCAAAAAGGAGCA+GGG + chr3.2:26748274-26748293 None:intergenic 40.0%
GAACTCTTTGCAGCTTCATT+TGG + chr3.2:26748488-26748507 None:intergenic 40.0%
GAATAGGGGTGGTATGATTA+AGG - chr3.2:26748544-26748563 MS.gene93360:intron 40.0%
GATGTAGAAGAAGGAAGAGA+TGG - chr3.2:26746071-26746090 MS.gene93360:CDS 40.0%
GTCAAAAATACTGAGACAGC+AGG - chr3.2:26746865-26746884 MS.gene93360:CDS 40.0%
GTCAAATGATCTCAATCCTG+CGG - chr3.2:26748001-26748020 MS.gene93360:intron 40.0%
GTGCATATTTGATATCACGG+TGG - chr3.2:26746243-26746262 MS.gene93360:CDS 40.0%
TCAAACCTCTCCAATGTTGA+TGG - chr3.2:26748601-26748620 MS.gene93360:CDS 40.0%
TCAGCATCTTTATCTGCTTC+AGG + chr3.2:26747456-26747475 None:intergenic 40.0%
TCTTCCTTCTTCTACATCCA+TGG + chr3.2:26746069-26746088 None:intergenic 40.0%
TGTCAAAGATATTGGACTGC+AGG - chr3.2:26747771-26747790 MS.gene93360:intron 40.0%
TTGGAATGTTCCTTGGTTTC+CGG - chr3.2:26748283-26748302 MS.gene93360:intron 40.0%
! AAGATTCTTTTTCCTGGGGA+AGG - chr3.2:26745996-26746015 MS.gene93360:CDS 40.0%
! CATTTTACCCTGCTCCTTTT+TGG - chr3.2:26748264-26748283 MS.gene93360:intron 40.0%
! GGGAAGAAGATTCTTTTTCC+TGG - chr3.2:26745990-26746009 MS.gene93360:CDS 40.0%
! TGAAGGTCTTATGATTGCTG+CGG - chr3.2:26746019-26746038 MS.gene93360:CDS 40.0%
! TGAGCGTTGTTGTTGTTGTT+TGG + chr3.2:26747630-26747649 None:intergenic 40.0%
!! TTGAGCATAGGGTAATGGAT+TGG - chr3.2:26746479-26746498 MS.gene93360:CDS 40.0%
!!! CTCCTTTTTGGAATGTTCCT+TGG - chr3.2:26748276-26748295 MS.gene93360:intron 40.0%
AAAGCTGAGGACTCTACCAT+TGG + chr3.2:26747949-26747968 None:intergenic 45.0%
AATGGTAGAGTCCTCAGCTT+TGG - chr3.2:26747948-26747967 MS.gene93360:intron 45.0%
ACCATGAGAAATGTTCCGGT+CGG - chr3.2:26747798-26747817 MS.gene93360:intron 45.0%
AGGAGCAGGGTAAAATGACA+TGG + chr3.2:26748261-26748280 None:intergenic 45.0%
AGTCCGAAATCTCCAACACT+CGG - chr3.2:26748335-26748354 MS.gene93360:intron 45.0%
AGTGATCTAGCTAAAGCTGC+AGG + chr3.2:26748632-26748651 None:intergenic 45.0%
ATGGTAGAGTCCTCAGCTTT+GGG - chr3.2:26747949-26747968 MS.gene93360:intron 45.0%
CAAAGATATTGGACTGCAGG+CGG - chr3.2:26747774-26747793 MS.gene93360:intron 45.0%
CATGTATGACTAGTGCTCCT+TGG - chr3.2:26748174-26748193 MS.gene93360:intron 45.0%
CGGAACCATGAGAAATGTTC+CGG - chr3.2:26747794-26747813 MS.gene93360:intron 45.0%
GAACTCCAAGTATAAGGCCA+AGG + chr3.2:26748194-26748213 None:intergenic 45.0%
GCAAGGCGTGTCAAAGATAT+TGG - chr3.2:26747763-26747782 MS.gene93360:intron 45.0%
GGAACATTCCAAAAAGGAGC+AGG + chr3.2:26748275-26748294 None:intergenic 45.0%
GGAAGAAAATGTTTCGCCGT+CGG - chr3.2:26746040-26746059 MS.gene93360:CDS 45.0%
GGAGCAGGGTAAAATGACAT+GGG + chr3.2:26748260-26748279 None:intergenic 45.0%
GTGATCTAGCTAAAGCTGCA+GGG + chr3.2:26748631-26748650 None:intergenic 45.0%
GTTAGCCATCAACATTGGAG+AGG + chr3.2:26748609-26748628 None:intergenic 45.0%
GTTGTCGTTCTTGATCTCTG+CGG + chr3.2:26747511-26747530 None:intergenic 45.0%
TCTCAATCCTGCGGAGAAAA+AGG - chr3.2:26748010-26748029 MS.gene93360:intron 45.0%
! GGAGATTTCGGACTAGACTT+TGG + chr3.2:26748329-26748348 None:intergenic 45.0%
! TTGAGAACCTTTTTCTCCGC+AGG + chr3.2:26748020-26748039 None:intergenic 45.0%
!! CAAGGAGCACTAGTCATACA+TGG + chr3.2:26748176-26748195 None:intergenic 45.0%
!! TGGCCTTATACTTGGAGTTC+CGG - chr3.2:26748194-26748213 MS.gene93360:intron 45.0%
!! TTCCCGAGTGTTGGAGATTT+CGG + chr3.2:26748341-26748360 None:intergenic 45.0%
!!! TTTTTGATTAAAAAAAATTT+AGG - chr3.2:26746597-26746616 MS.gene93360:CDS 5.0%
AACACTCGGGAAACACTCGA+GGG - chr3.2:26748349-26748368 MS.gene93360:intron 50.0%
AATGACATGGGAAATCCCGG+AGG + chr3.2:26748248-26748267 None:intergenic 50.0%
ACCGACCGGAACATTTCTCA+TGG + chr3.2:26747802-26747821 None:intergenic 50.0%
AGAAAATGTTTCGCCGTCGG+CGG - chr3.2:26746043-26746062 MS.gene93360:CDS 50.0%
AGGACACAAAGTTTGTGGCG+AGG + chr3.2:26748228-26748247 None:intergenic 50.0%
ATAAGACCTTCACCTTCCCC+AGG + chr3.2:26746011-26746030 None:intergenic 50.0%
CACGCCTTGCAAAAATAGCG+CGG + chr3.2:26747753-26747772 None:intergenic 50.0%
CCACAAACTTTGTGTCCTCC+GGG - chr3.2:26748230-26748249 MS.gene93360:intron 50.0%
GATGATCCAACCCAAAGCTG+AGG + chr3.2:26747962-26747981 None:intergenic 50.0%
GCCACAAACTTTGTGTCCTC+CGG - chr3.2:26748229-26748248 MS.gene93360:intron 50.0%
GGACACAAAGTTTGTGGCGA+GGG + chr3.2:26748227-26748246 None:intergenic 50.0%
GTCCGAAATCTCCAACACTC+GGG - chr3.2:26748336-26748355 MS.gene93360:intron 50.0%
TGCATCAAGAGCCTCAGAGA+TGG + chr3.2:26747877-26747896 None:intergenic 50.0%
TTCTTGATCTCTGCGGCATC+TGG + chr3.2:26747504-26747523 None:intergenic 50.0%
! CTTTTTCCTGGGGAAGGTGA+AGG - chr3.2:26746002-26746021 MS.gene93360:CDS 50.0%
! GGACACGGGAGTAATTTGTC+TGG + chr3.2:26747672-26747691 None:intergenic 50.0%
!! ACTAGACTTTGGAGTTGCCG+CGG + chr3.2:26748318-26748337 None:intergenic 50.0%
!! GCAGGGTTAGCCATCAACAT+TGG + chr3.2:26748614-26748633 None:intergenic 50.0%
!! GTGCTCCTTGGCCTTATACT+TGG - chr3.2:26748186-26748205 MS.gene93360:intron 50.0%
!! TAGAGTCCTCAGCTTTGGGT+TGG - chr3.2:26747953-26747972 MS.gene93360:intron 50.0%
!!! TCAGCCGCGCTATTTTTGCA+AGG - chr3.2:26747746-26747765 MS.gene93360:intron 50.0%
AGAAATGTTCCGGTCGGTGC+AGG - chr3.2:26747804-26747823 MS.gene93360:intron 55.0%
CAACACTCGGGAAACACTCG+AGG - chr3.2:26748348-26748367 MS.gene93360:intron 55.0%
CCCGGAGGACACAAAGTTTG+TGG + chr3.2:26748233-26748252 None:intergenic 55.0%
CTCGAGTGTTTCCCGAGTGT+TGG + chr3.2:26748350-26748369 None:intergenic 55.0%
GAAATGTTCCGGTCGGTGCA+GGG - chr3.2:26747805-26747824 MS.gene93360:intron 55.0%
GCGCCGGAACTCCAAGTATA+AGG + chr3.2:26748200-26748219 None:intergenic 55.0%
GCGGCCATGGATGTAGAAGA+AGG - chr3.2:26746062-26746081 MS.gene93360:CDS 55.0%
GGAGTATGAGCCGGAAACCA+AGG + chr3.2:26748296-26748315 None:intergenic 55.0%
TCGCCACATCACCATCTCTG+AGG - chr3.2:26747863-26747882 MS.gene93360:intron 55.0%
TTGATCTCTGCGGCATCTGG+TGG + chr3.2:26747501-26747520 None:intergenic 55.0%
! GAGCCTCAGAGATGGTGATG+TGG + chr3.2:26747869-26747888 None:intergenic 55.0%
! TTTCTTCTCCCTGCACCGAC+CGG + chr3.2:26747816-26747835 None:intergenic 55.0%
!! CTAGACTTTGGAGTTGCCGC+GGG + chr3.2:26748317-26748336 None:intergenic 55.0%
ATCTCTGCGGCATCTGGTGG+AGG + chr3.2:26747498-26747517 None:intergenic 60.0%
GTTTCCGGCTCATACTCCCG+CGG - chr3.2:26748298-26748317 MS.gene93360:intron 60.0%
TCTACATCCATGGCCGCCGA+CGG + chr3.2:26746059-26746078 None:intergenic 60.0%
TTGTGGCGAGGGAATTGCGC+CGG + chr3.2:26748216-26748235 None:intergenic 60.0%
CGCTGTTGCAGCGTGGACAC+GGG + chr3.2:26747686-26747705 None:intergenic 65.0%
GCGCTGTTGCAGCGTGGACA+CGG + chr3.2:26747687-26747706 None:intergenic 65.0%
GTGTCCACGCTGCAACAGCG+CGG - chr3.2:26747686-26747705 MS.gene93360:intron 65.0%
! GTTGCCGCGGGAGTATGAGC+CGG + chr3.2:26748305-26748324 None:intergenic 65.0%
GTGTCCGCGCTGTTGCAGCG+TGG + chr3.2:26747693-26747712 None:intergenic 70.0%
TGTTTCGCCGTCGGCGGCCA+TGG - chr3.2:26746049-26746068 MS.gene93360:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.2 gene 26745954 26748673 26745954 ID=MS.gene93360
chr3.2 mRNA 26745954 26748673 26745954 ID=MS.gene93360.t1;Parent=MS.gene93360
chr3.2 exon 26748578 26748673 26748578 ID=MS.gene93360.t1.exon1;Parent=MS.gene93360.t1
chr3.2 CDS 26748578 26748673 26748578 ID=cds.MS.gene93360.t1;Parent=MS.gene93360.t1
chr3.2 exon 26745954 26747177 26745954 ID=MS.gene93360.t1.exon2;Parent=MS.gene93360.t1
chr3.2 CDS 26745954 26747177 26745954 ID=cds.MS.gene93360.t1;Parent=MS.gene93360.t1
Gene Sequence

>MS.gene93360

ATGATTGAAACTAAGGACCCTGAAATTAAGCTTTTTGGGAAGAAGATTCTTTTTCCTGGGGAAGGTGAAGGTCTTATGATTGCTGCGGAAGAAAATGTTTCGCCGTCGGCGGCCATGGATGTAGAAGAAGGAAGAGATGGATATTATAGTGAGACTGAGAATGAAGATGAAGAAGAAGAAATCGAGAAGGTACAAATTTTTTTATAAATTAAAGTATGATAGTGCACACAATTAATTGTCGATACTAAAGATTTTTATGAGTAAGGAGACTTTTTTTGTTTTCTGTATCGTGCATATTTGATATCACGGTGGCTTTGTCAAAATCATAGACTGCAACGACTGTGATACTAAACATGTACCACGAGTATCTATCTATTTGTTGTGTTTATTGAAAAAGTCAATACGATTGGAGATGTCTTGTTTGTATGATTTTATTTTTTTTTACATGATTGTTTGTATGATCTTATTATAGGTTATTTTCTTATCTCGAGCTTTATCTCTTTAAGATGTCAAAATTAAATAAATTTGAGCATAGGGTAATGGATTGGTTTTCTTTATCCTTTTTTACAAATTTTTCTATATGGTTTTGATTTTTTTCATGTTCTGAAATTTACCCCTTAGGGAATTTTCAATTTTTACAAGTTTTTTGATTAAAAAAAATTTAGGATCGTGTTTTCTAGTTCAATTTTCTTACTTACTTAAAGAGAGATTTGTAAACAGAGTTGACTAATGTTTTTTTTTTTTTTTTTTTTTTTTTGCAATTTTTACATGAAGTTGGTAAGCACTCTTTTTCAATTTTTATATGAAGTTGGTAAGGACTCGAAATAAAGTTTTTGATTTATTTTTGATGTTTTGGTTAATTTTATTTTTCATTTAATTACTGATTAAAACTATACAACAAACATTTTTCAGTCAAAAATACTGAGACAGCAGGGTATTTATTTTACATCAAAATAAACTGACTAGACCTTCCTATGAGCACTATACAGTAGAAAAGTTCTACTTCTACCTAAGTCTTTTTGTTTATAATCTCGTTTATACTTCTACTTAGTCTGAATATCTACTTTATGTTTATATACCTCAATTGATGCAATATATATTTTCAATTATGTTATTCAGTCACACATAAATTATTAACCTAACTCATATGAGTTACTAAATTTAAATTATTTTCATACTTTGATATACTTTTATTATTTAATAAGCATGTTAAATTTCTTCAACCTTTTCTTGATGTTCTTCTTGTTCGAGTTATAATCTAATTTGAATTTATAAAATTGCAAATTATGCACTTATGCTCTTGGATATGCAGGACTGATACTTCAGATTTGGAAAAATGTTTGGTGTCTGACATTGACACCACAGTGACACATACAATAGTTACATTAAATCACTTATATTGTCTCAAATAATTAGCGGTGTCAACATGTTAGTGTTGATGCCGTGTCTCATGTTCATCATTAATCTTTAATGAAAACATTGTGTCAAATTAATAGGATCCTGAAGCAGATAAAGATGCTGAGAAAAAGAAAGAAGTTGATCCTCCACCAGATGCCGCAGAGATCAAGAACGACAACAACAATTCAGCAGCAACATTGGGTATTCAGAACCCGAAAACACCTTCTATTGATGAAGAAACTTCAAAATCCGAAAACGAACAAAGTGATACAACACCAAACAACAACAACAACGCTCAAGAAAAAACACTAAAGAAACCAGACAAATTACTCCCGTGTCCACGCTGCAACAGCGCGGACACAAAATTCTGTTACTACAATAATTACAACGTCAATCAGCCGCGCTATTTTTGCAAGGCGTGTCAAAGATATTGGACTGCAGGCGGAACCATGAGAAATGTTCCGGTCGGTGCAGGGAGAAGAAAAAATAAGAACAACTCTTCGTCACATTATCGCCACATCACCATCTCTGAGGCTCTTGATGCAGCAAGAATTGTTTCTCCTAATGGTACTCATCATCTTCAAAATTTGAAAACCAATGGTAGAGTCCTCAGCTTTGGGTTGGATCATCCACATATCTATGATTCATTGTCAAATGATCTCAATCCTGCGGAGAAAAAGGTTCTCAACGACACTCGAAATAATGGTGATTGTTTTTCGAGTGCGTCTTCTGATACAATTTTAAAATCTATGGAGGAAAGTGGTAAAAACATGTCACAAGAATCATTGCCAAGCCAAAATAATGGTTTCATTCCTCAAGTTCCATGTATGACTAGTGCTCCTTGGCCTTATACTTGGAGTTCCGGCGCAATTCCCTCGCCACAAACTTTGTGTCCTCCGGGATTTCCCATGTCATTTTACCCTGCTCCTTTTTGGAATGTTCCTTGGTTTCCGGCTCATACTCCCGCGGCAACTCCAAAGTCTAGTCCGAAATCTCCAACACTCGGGAAACACTCGAGGGATGATGACAACAACAACGACGAAATTGCTAAACAAGACCATTTGCAAACAGAAGAATCACCAAAACAAAGAAATGGATGTGTTTTAGTTCCTAAAACATTGAGAATTGATGATCCAAATGAAGCTGCAAAGAGTTCAATTTGGGAAACACTTGGAATTAAGAATGAAGGTTTGAATAGGGGTGGTATGATTAAGGCTTTTCAATCAAAGAAAGATGGTAAAAACCATGTTCAAACCTCTCCAATGTTGATGGCTAACCCTGCAGCTTTAGCTAGATCACTTAATTTCCATGAGAACTCTTAA
Protein sequence

>MS.gene93360.t1

MIETKDPEIKLFGKKILFPGEGEGLMIAAEENDPEADKDAEKKKEVDPPPDAAEIKNDNNNSAATLGIQNPKTPSIDEETSKSENEQSDTTPNNNNNAQEKTLKKPDKLLPCPRCNSADTKFCYYNNYNVNQPRYFCKACQRYWTAGGTMRNVPVGAGRRKNKNNSSSHYRHITISEALDAARIVSPNGTHHLQNLKTNGRVLSFGLDHPHIYDSLSNDLNPAEKKVLNDTRNNGDCFSSASSDTILKSMEESGKNMSQESLPSQNNGFIPQVPCMTSAPWPYTWSSGAIPSPQTLCPPGFPMSFYPAPFWNVPWFPAHTPAATPKSSPKSPTLGKHSRDDDNNNDEIAKQDHLQTEESPKQRNGCVLVPKTLRIDDPNEAAKSSIWETLGIKNEGLNRGGMIKAFQSKKDGKNHVQTSPMLMANPAALARSLNFHENS