Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050702.t1 | XP_003626618.2 | 92.5 | 744 | 45 | 2 | 12 | 744 | 11 | 754 | 0.00E+00 | 1311.6 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050702.t1 | Q6R0H1 | 40.2 | 751 | 304 | 23 | 17 | 743 | 15 | 644 | 2.3e-102 | 374.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050702.t1 | G7L558 | 92.5 | 744 | 45 | 2 | 12 | 744 | 11 | 754 | 0.0e+00 | 1311.6 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene050702.t1 | TF | MYB-related |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050702 | MS.gene052224 | 0.827066 | 1.92E-54 | -1.69E-46 |
MS.gene050702 | MS.gene053401 | -0.829818 | 4.16E-55 | -1.69E-46 |
MS.gene050702 | MS.gene058551 | -0.860873 | 1.52E-63 | -1.69E-46 |
MS.gene050702 | MS.gene061735 | -0.881379 | 2.52E-70 | -1.69E-46 |
MS.gene050702 | MS.gene063813 | 0.839598 | 1.44E-57 | -1.69E-46 |
MS.gene050702 | MS.gene073796 | 0.827871 | 1.23E-54 | -1.69E-46 |
MS.gene050702 | MS.gene22755 | 0.988647 | 7.57E-175 | -1.69E-46 |
MS.gene050702 | MS.gene23262 | -0.906396 | 1.55E-80 | -1.69E-46 |
MS.gene050702 | MS.gene23263 | -0.847044 | 1.48E-59 | -1.69E-46 |
MS.gene050702 | MS.gene23264 | -0.884672 | 1.57E-71 | -1.69E-46 |
MS.gene050702 | MS.gene25698 | -0.911462 | 5.92E-83 | -1.69E-46 |
MS.gene050702 | MS.gene26560 | -0.822958 | 1.79E-53 | -1.69E-46 |
MS.gene050702 | MS.gene30248 | -0.879079 | 1.67E-69 | -1.69E-46 |
MS.gene050702 | MS.gene30894 | 0.830857 | 2.32E-55 | -1.69E-46 |
MS.gene050702 | MS.gene39121 | 0.850752 | 1.39E-60 | -1.69E-46 |
MS.gene050702 | MS.gene39593 | -0.840011 | 1.12E-57 | -1.69E-46 |
MS.gene050702 | MS.gene40440 | 0.830567 | 2.73E-55 | -1.69E-46 |
MS.gene050702 | MS.gene45192 | 0.82507 | 5.73E-54 | -1.69E-46 |
MS.gene050702 | MS.gene45593 | -0.867084 | 1.78E-65 | -1.69E-46 |
MS.gene050702 | MS.gene45595 | -0.861983 | 6.99E-64 | -1.69E-46 |
MS.gene050702 | MS.gene45666 | -0.90539 | 4.52E-80 | -1.69E-46 |
MS.gene050702 | MS.gene50083 | -0.884873 | 1.32E-71 | -1.69E-46 |
MS.gene050702 | MS.gene50084 | -0.868621 | 5.70E-66 | -1.69E-46 |
MS.gene050702 | MS.gene50085 | -0.900057 | 1.07E-77 | -1.69E-46 |
MS.gene050702 | MS.gene54974 | -0.85281 | 3.62E-61 | -1.69E-46 |
MS.gene050702 | MS.gene56536 | 0.858795 | 6.45E-63 | -1.69E-46 |
MS.gene050702 | MS.gene58413 | -0.870407 | 1.49E-66 | -1.69E-46 |
MS.gene050702 | MS.gene59440 | 0.86664 | 2.46E-65 | -1.69E-46 |
MS.gene050702 | MS.gene62175 | 0.837486 | 5.05E-57 | -1.69E-46 |
MS.gene050702 | MS.gene62679 | -0.867567 | 1.24E-65 | -1.69E-46 |
MS.gene050702 | MS.gene62919 | 0.868563 | 5.95E-66 | -1.69E-46 |
MS.gene050702 | MS.gene63294 | 0.84024 | 9.79E-58 | -1.69E-46 |
MS.gene050702 | MS.gene64738 | 0.871732 | 5.46E-67 | -1.69E-46 |
MS.gene050702 | MS.gene65495 | -0.828471 | 8.83E-55 | -1.69E-46 |
MS.gene050702 | MS.gene65946 | -0.819559 | 1.09E-52 | -1.69E-46 |
MS.gene050702 | MS.gene68034 | 0.890264 | 1.15E-73 | -1.69E-46 |
MS.gene050702 | MS.gene70471 | -0.875109 | 3.99E-68 | -1.69E-46 |
MS.gene050702 | MS.gene72598 | -0.808198 | 3.48E-50 | -1.69E-46 |
MS.gene050702 | MS.gene75459 | 0.835992 | 1.21E-56 | -1.69E-46 |
MS.gene050702 | MS.gene79233 | 0.849123 | 3.96E-60 | -1.69E-46 |
MS.gene050702 | MS.gene81017 | -0.844015 | 9.82E-59 | -1.69E-46 |
MS.gene050702 | MS.gene93360 | 0.849896 | 2.41E-60 | -1.69E-46 |
MS.gene050702 | MS.gene95023 | -0.801503 | 8.73E-49 | -1.69E-46 |
MS.gene050702 | MS.gene96790 | 0.857039 | 2.14E-62 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050702.t1 | MTR_7g118330 | 97.043 | 744 | 11 | 2 | 12 | 744 | 11 | 754 | 0.0 | 1494 |
MS.gene050702.t1 | MTR_3g064500 | 64.815 | 108 | 33 | 3 | 10 | 114 | 40 | 145 | 1.88e-30 | 123 |
MS.gene050702.t1 | MTR_5g076960 | 72.043 | 93 | 24 | 1 | 17 | 109 | 34 | 124 | 6.99e-30 | 123 |
MS.gene050702.t1 | MTR_1g067000 | 51.961 | 102 | 37 | 2 | 16 | 115 | 37 | 128 | 4.23e-29 | 118 |
MS.gene050702.t1 | MTR_8g028655 | 53.000 | 100 | 37 | 1 | 17 | 116 | 55 | 144 | 9.26e-29 | 118 |
MS.gene050702.t1 | MTR_6g477860 | 71.579 | 95 | 25 | 1 | 16 | 110 | 47 | 139 | 1.10e-28 | 120 |
MS.gene050702.t1 | MTR_0123s0070 | 53.465 | 101 | 37 | 2 | 17 | 117 | 41 | 131 | 1.44e-28 | 116 |
MS.gene050702.t1 | MTR_0123s0070 | 53.465 | 101 | 37 | 2 | 17 | 117 | 41 | 131 | 1.64e-28 | 117 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene050702.t1 | AT1G01060 | 44.297 | 754 | 268 | 23 | 17 | 743 | 15 | 643 | 2.98e-122 | 380 |
MS.gene050702.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 3.55e-122 | 380 |
MS.gene050702.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 3.55e-122 | 380 |
MS.gene050702.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 3.55e-122 | 380 |
MS.gene050702.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 3.55e-122 | 380 |
MS.gene050702.t1 | AT1G01060 | 44.371 | 755 | 267 | 24 | 17 | 743 | 15 | 644 | 3.55e-122 | 380 |
MS.gene050702.t1 | AT2G46830 | 37.268 | 754 | 288 | 31 | 12 | 739 | 9 | 603 | 4.14e-82 | 273 |
MS.gene050702.t1 | AT1G01060 | 40.113 | 708 | 271 | 24 | 64 | 743 | 60 | 642 | 1.15e-77 | 263 |
MS.gene050702.t1 | AT1G01060 | 40.113 | 708 | 271 | 24 | 64 | 743 | 60 | 642 | 1.15e-77 | 263 |
MS.gene050702.t1 | AT2G46830 | 39.268 | 410 | 179 | 18 | 350 | 739 | 162 | 521 | 2.10e-44 | 168 |
MS.gene050702.t1 | AT2G46830 | 39.268 | 410 | 179 | 18 | 350 | 739 | 162 | 521 | 2.10e-44 | 168 |
MS.gene050702.t1 | AT5G17300 | 67.619 | 105 | 31 | 2 | 6 | 109 | 34 | 136 | 3.54e-32 | 129 |
MS.gene050702.t1 | AT5G37260 | 68.041 | 97 | 25 | 1 | 13 | 109 | 23 | 113 | 6.47e-32 | 126 |
MS.gene050702.t1 | AT1G18330 | 56.489 | 131 | 50 | 2 | 12 | 137 | 36 | 164 | 1.55e-31 | 126 |
MS.gene050702.t1 | AT3G10113 | 56.489 | 131 | 50 | 2 | 12 | 137 | 51 | 179 | 2.23e-31 | 125 |
MS.gene050702.t1 | AT1G18330 | 56.489 | 131 | 50 | 2 | 12 | 137 | 62 | 190 | 4.73e-31 | 125 |
MS.gene050702.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 5.69e-29 | 117 |
MS.gene050702.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 5.79e-29 | 118 |
MS.gene050702.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 5.79e-29 | 118 |
MS.gene050702.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 6.71e-29 | 117 |
MS.gene050702.t1 | AT3G09600 | 53.191 | 94 | 34 | 1 | 16 | 109 | 33 | 116 | 6.71e-29 | 117 |
MS.gene050702.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.07e-27 | 113 |
MS.gene050702.t1 | AT5G52660 | 55.789 | 95 | 32 | 2 | 17 | 111 | 63 | 147 | 1.25e-27 | 115 |
MS.gene050702.t1 | AT5G52660 | 55.789 | 95 | 32 | 2 | 17 | 111 | 63 | 147 | 1.28e-27 | 114 |
MS.gene050702.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.33e-27 | 114 |
MS.gene050702.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.33e-27 | 114 |
MS.gene050702.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.37e-27 | 113 |
MS.gene050702.t1 | AT5G02840 | 52.128 | 94 | 35 | 1 | 16 | 109 | 38 | 121 | 1.91e-27 | 113 |
MS.gene050702.t1 | AT4G01280 | 54.206 | 107 | 37 | 3 | 17 | 121 | 50 | 146 | 2.07e-27 | 113 |
MS.gene050702.t1 | AT4G01280 | 54.206 | 107 | 37 | 3 | 17 | 121 | 50 | 146 | 2.08e-27 | 113 |
MS.gene050702.t1 | AT1G01520 | 38.202 | 178 | 75 | 6 | 16 | 169 | 51 | 217 | 1.23e-26 | 110 |
MS.gene050702.t1 | AT1G01520 | 38.202 | 178 | 75 | 6 | 16 | 169 | 51 | 217 | 1.24e-26 | 110 |
MS.gene050702.t1 | AT1G01520 | 38.202 | 178 | 75 | 6 | 16 | 169 | 51 | 217 | 1.24e-26 | 110 |
MS.gene050702.t1 | AT1G01520 | 38.202 | 178 | 75 | 6 | 16 | 169 | 51 | 217 | 1.46e-26 | 110 |
MS.gene050702.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 44 | 109 | 5 | 60 | 1.16e-13 | 72.0 |
MS.gene050702.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 44 | 109 | 5 | 60 | 1.16e-13 | 72.0 |
MS.gene050702.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 44 | 109 | 5 | 60 | 1.24e-13 | 71.6 |
MS.gene050702.t1 | AT3G09600 | 45.455 | 66 | 26 | 1 | 44 | 109 | 5 | 60 | 1.24e-13 | 71.6 |
Find 171 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACAGGGACGACTTGCCTTTC+GGG | 0.205941 | 7.4:-369921 | MS.gene050702:intron |
TTCTCGGATTGAACCGATTT+CGG | 0.267063 | 7.4:+371108 | None:intergenic |
TCCTCATGATTTGATAAATA+AGG | 0.270829 | 7.4:-369858 | MS.gene050702:CDS |
GCTTTGCAAGCTCAACATTC+AGG | 0.271530 | 7.4:-370361 | MS.gene050702:CDS |
TTAGCAACCTTCTTGATTCT+TGG | 0.278037 | 7.4:-370042 | MS.gene050702:CDS |
CATTCCGCCCCTGCTTTCCT+TGG | 0.281657 | 7.4:+369646 | None:intergenic |
TACAGGGACGACTTGCCTTT+CGG | 0.283902 | 7.4:-369922 | MS.gene050702:intron |
GGTTTCCCATCTAGACAAAT+TGG | 0.286499 | 7.4:-370628 | MS.gene050702:CDS |
CCCTTCCAGGCGTATCCTCT+TGG | 0.318732 | 7.4:+369595 | None:intergenic |
CAAAGACTGCTGTGCAAATC+AGG | 0.320713 | 7.4:-378546 | MS.gene050702:CDS |
ATATCTCCTTGATCTGTCTT+AGG | 0.340962 | 7.4:+370439 | None:intergenic |
GGTGAACCAATTTGTCTAGA+TGG | 0.346189 | 7.4:+370622 | None:intergenic |
CATCATCTATCTTCAACATC+TGG | 0.356720 | 7.4:+371190 | None:intergenic |
TGCCGAAGATACAGATGAAC+AGG | 0.360829 | 7.4:+371344 | None:intergenic |
ATGAGGAGGTGAAAAGCTTT+GGG | 0.361595 | 7.4:+369874 | None:intergenic |
CTTGCTGCAGCATGGGCTGC+AGG | 0.364555 | 7.4:+370721 | None:intergenic |
GAACCCTGATTCCAACAAAA+TGG | 0.366904 | 7.4:-370227 | MS.gene050702:CDS |
CTAGAAGCCCTCAAGCTATA+TGG | 0.366925 | 7.4:-378680 | MS.gene050702:CDS |
TTGCTCCACTATGTAATGTT+GGG | 0.369916 | 7.4:+371623 | None:intergenic |
TTACATAGTGGAGCAAAGTA+TGG | 0.371275 | 7.4:-371616 | MS.gene050702:CDS |
GAATCAGGGTTCTCAGAAAC+TGG | 0.380151 | 7.4:+370238 | None:intergenic |
GACAAATTCCTGCACCATAA+GGG | 0.382064 | 7.4:-371289 | MS.gene050702:CDS |
CATGAGGAGGTGAAAAGCTT+TGG | 0.391387 | 7.4:+369873 | None:intergenic |
CTTGTAAAAGGTGCTGCATT+AGG | 0.396536 | 7.4:-371730 | MS.gene050702:CDS |
CTTCTATATCGACGACTACT+AGG | 0.397927 | 7.4:+370067 | None:intergenic |
GGATTTCTAACCATGGGTCT+TGG | 0.398079 | 7.4:-369731 | MS.gene050702:CDS |
AAACTTAAGACTCGTCGAAC+AGG | 0.401478 | 7.4:-369701 | MS.gene050702:CDS |
TGGTGCTGTGGACTTCGTTT+TGG | 0.406608 | 7.4:-379229 | MS.gene050702:intron |
CACGTTGTTGATGGGAACTT+TGG | 0.409244 | 7.4:-371009 | MS.gene050702:CDS |
ACATTGGTCTTGCGAGGATA+AGG | 0.411349 | 7.4:+371652 | None:intergenic |
GATTCTCCTGCTTGCTCTCA+AGG | 0.412243 | 7.4:-370652 | MS.gene050702:CDS |
AGAACAATTCTCCAACTTAG+AGG | 0.412800 | 7.4:+371131 | None:intergenic |
GCTGGATTTGCGAAGAGATT+AGG | 0.415370 | 7.4:+370907 | None:intergenic |
CCTTCCAGGCGTATCCTCTT+GGG | 0.419975 | 7.4:+369596 | None:intergenic |
GAGAAGGAAGCACTTGTAAA+AGG | 0.422043 | 7.4:-371742 | MS.gene050702:CDS |
CGAGCATGGCAGCGTATAGA+AGG | 0.422755 | 7.4:-378656 | MS.gene050702:intron |
GGAGAATTGTTCTCCGAAAT+CGG | 0.424106 | 7.4:-371121 | MS.gene050702:CDS |
AGACAAATTCCTGCACCATA+AGG | 0.431378 | 7.4:-371290 | MS.gene050702:CDS |
TCACTTGTGTTTGATGCAGC+TGG | 0.433165 | 7.4:+370889 | None:intergenic |
AGCAAAACTTGCTGCAGCAT+GGG | 0.435145 | 7.4:+370714 | None:intergenic |
GCTTTGGGGCAACACCTCTC+TGG | 0.439351 | 7.4:+369889 | None:intergenic |
AAATGCATTTCTTGCTCTCA+AGG | 0.445522 | 7.4:+369810 | None:intergenic |
TAGTAGAGGCCAAGGAAAGC+AGG | 0.446953 | 7.4:-369655 | MS.gene050702:CDS |
ACTGCATGGTGGGCAGCTCA+TGG | 0.449952 | 7.4:-370556 | MS.gene050702:CDS |
ATCACTGTGCACGTTGTTGA+TGG | 0.454210 | 7.4:-371018 | MS.gene050702:CDS |
TGTTTACTAATATTTGTTGA+TGG | 0.455780 | 7.4:+370466 | None:intergenic |
GAGGACAGGCAAAAGCTGTC+TGG | 0.462645 | 7.4:+370509 | None:intergenic |
ACAAATTCCTGCACCATAAG+GGG | 0.465629 | 7.4:-371288 | MS.gene050702:CDS |
GTTTATATCAAGATTAATAG+TGG | 0.465812 | 7.4:+370264 | None:intergenic |
CTTGCTCATGCAGAACATAT+AGG | 0.466013 | 7.4:-378571 | MS.gene050702:intron |
CAAGGAAAGCAGGGGCGGAA+TGG | 0.468012 | 7.4:-369645 | MS.gene050702:CDS |
ACCCTGTTCATCTGTATCTT+CGG | 0.470243 | 7.4:-371346 | MS.gene050702:CDS |
TGCTCGGCCATATAGCTTGA+GGG | 0.477143 | 7.4:+378673 | None:intergenic |
TTGCGAGGATAAGGATTGCT+TGG | 0.483780 | 7.4:+371661 | None:intergenic |
GACTCTACATTTCAGCCAAT+AGG | 0.484471 | 7.4:-370946 | MS.gene050702:CDS |
TTTGCTCCACTATGTAATGT+TGG | 0.491563 | 7.4:+371622 | None:intergenic |
AGCTGCTGCAACTGCATGGT+GGG | 0.492943 | 7.4:-370566 | MS.gene050702:CDS |
CAACCACCTAAGACAGATCA+AGG | 0.494885 | 7.4:-370445 | MS.gene050702:CDS |
CAAGAGGATACGCCTGGAAG+GGG | 0.496539 | 7.4:-369594 | MS.gene050702:CDS |
GTAGCTAAATGATCCGCATC+AGG | 0.496824 | 7.4:+370094 | None:intergenic |
TCAGCATGGTTATGTGCAAA+TGG | 0.496955 | 7.4:+370811 | None:intergenic |
TGGGACCCGTCTCTTCAACT+TGG | 0.503574 | 7.4:+369615 | None:intergenic |
CCAAGAGGATACGCCTGGAA+GGG | 0.504041 | 7.4:-369595 | MS.gene050702:CDS |
AGTTGTTGATGCAGGAGGAC+AGG | 0.504260 | 7.4:+370495 | None:intergenic |
GTTATTACCTCTTTCACTGA+AGG | 0.506309 | 7.4:+371258 | None:intergenic |
CTTCTATACGCTGCCATGCT+CGG | 0.509729 | 7.4:+378657 | None:intergenic |
GGGTCCCAAGAGGATACGCC+TGG | 0.511211 | 7.4:-369600 | MS.gene050702:CDS |
CAGGGTTCTCAGAAACTGGT+TGG | 0.511462 | 7.4:+370242 | None:intergenic |
GTTTACACCTTCAGTGAAAG+AGG | 0.512851 | 7.4:-371265 | MS.gene050702:CDS |
CCTTCTTGATTCTTGGAAGG+AGG | 0.514276 | 7.4:-370035 | MS.gene050702:CDS |
CATTTGTCGAACCTCTAAGT+TGG | 0.515112 | 7.4:-371142 | MS.gene050702:CDS |
CAACCTTCTTGATTCTTGGA+AGG | 0.517741 | 7.4:-370038 | MS.gene050702:CDS |
TGTAGAAGACATGTTGAGAA+AGG | 0.517978 | 7.4:+370780 | None:intergenic |
TTGCTGCAGCATGGGCTGCA+GGG | 0.518760 | 7.4:+370722 | None:intergenic |
ATGCTCGGCCATATAGCTTG+AGG | 0.521384 | 7.4:+378672 | None:intergenic |
CCCAAGAGGATACGCCTGGA+AGG | 0.522353 | 7.4:-369596 | MS.gene050702:CDS |
ACGTGCACAGTGATATGTCT+TGG | 0.523923 | 7.4:+371027 | None:intergenic |
GTGAACCAATTTGTCTAGAT+GGG | 0.530035 | 7.4:+370623 | None:intergenic |
CAGCAAAACTTGCTGCAGCA+TGG | 0.533463 | 7.4:+370713 | None:intergenic |
CGTGCACAGTGATATGTCTT+GGG | 0.533974 | 7.4:+371028 | None:intergenic |
AAAAGTATTAACAGTCCTCA+AGG | 0.540476 | 7.4:-371373 | MS.gene050702:CDS |
TCTCCTTGATCTGTCTTAGG+TGG | 0.542096 | 7.4:+370442 | None:intergenic |
GATTCAGATGAAGAAACAGC+TGG | 0.543112 | 7.4:+370328 | None:intergenic |
CTGATAGACCGGTCTTCTTG+TGG | 0.544065 | 7.4:-370193 | MS.gene050702:CDS |
TGAGAAAGAATCACTTCTAG+AGG | 0.549009 | 7.4:-371542 | MS.gene050702:intron |
CAGTAGCTGCTGCAACTGCA+TGG | 0.549463 | 7.4:-370570 | MS.gene050702:CDS |
GAAGATTCTACATTTGCATA+CGG | 0.549998 | 7.4:+370679 | None:intergenic |
TTCACAGCTAGAGGTTGTGT+TGG | 0.551194 | 7.4:+370168 | None:intergenic |
AGAGGATACGCCTGGAAGGG+GGG | 0.551215 | 7.4:-369592 | MS.gene050702:CDS |
AGAGAAGGATGAGAAAGAAA+AGG | 0.551265 | 7.4:-370131 | MS.gene050702:CDS |
CTAACCATGGGTCTTGGACA+AGG | 0.551976 | 7.4:-369725 | MS.gene050702:CDS |
AAGAGGATACGCCTGGAAGG+GGG | 0.554626 | 7.4:-369593 | MS.gene050702:CDS |
TTCACACGGTAAACAAGCAA+TGG | 0.555075 | 7.4:-371569 | MS.gene050702:CDS |
GTCTGGAGCGGAGCGCACAC+AGG | 0.557230 | 7.4:+370526 | None:intergenic |
CAGATGTTGAAGATAGATGA+TGG | 0.559885 | 7.4:-371189 | MS.gene050702:CDS |
AGTAGAGGCCAAGGAAAGCA+GGG | 0.563052 | 7.4:-369654 | MS.gene050702:CDS |
TATCCTCGCAAGACCAATGT+TGG | 0.566159 | 7.4:-371649 | MS.gene050702:CDS |
TGTTTCTTCATCTGAATCAG+AGG | 0.567469 | 7.4:-370323 | MS.gene050702:CDS |
AAGATGTTTAGTAGAGGCCA+AGG | 0.570129 | 7.4:-369663 | MS.gene050702:CDS |
TAATGTTGGGGTACCAACAT+TGG | 0.570681 | 7.4:+371636 | None:intergenic |
TCTACATTTCAGCCAATAGG+AGG | 0.570815 | 7.4:-370943 | MS.gene050702:CDS |
TGCAACCAAGTTGAAGAGAC+GGG | 0.572457 | 7.4:-369620 | MS.gene050702:CDS |
TTTACCTTGTCCAAGACCCA+TGG | 0.574964 | 7.4:+369721 | None:intergenic |
TCCTTATTTATCAAATCATG+AGG | 0.575227 | 7.4:+369857 | None:intergenic |
AGTAACTGATCTTGCAGAGG+AGG | 0.576051 | 7.4:+370403 | None:intergenic |
TGTTGGAACCACAAGAAGAC+CGG | 0.580340 | 7.4:+370185 | None:intergenic |
TAAGTTAAATACTTCATCAA+AGG | 0.580402 | 7.4:-370287 | MS.gene050702:CDS |
GATAAATAAGGATAATCAGA+TGG | 0.582791 | 7.4:-369846 | MS.gene050702:CDS |
CAGGCAAAAGCTGTCTGGAG+CGG | 0.584079 | 7.4:+370514 | None:intergenic |
AGGAGCATAAAGATGAGGAA+AGG | 0.584458 | 7.4:-371434 | MS.gene050702:CDS |
ATCAGTCTCTTCACAGCTAG+AGG | 0.585395 | 7.4:+370159 | None:intergenic |
AACATGACTTTATTATCCAA+AGG | 0.585960 | 7.4:-379334 | MS.gene050702:intron |
AAGACATGTTGAGAAAGGAT+TGG | 0.586137 | 7.4:+370785 | None:intergenic |
TCAAGCTATATGGCCGAGCA+TGG | 0.586429 | 7.4:-378670 | MS.gene050702:CDS |
TACATTTCAGCCAATAGGAG+GGG | 0.587380 | 7.4:-370941 | MS.gene050702:CDS |
GTACAAAATAACAATGAGGA+GGG | 0.588065 | 7.4:-369752 | MS.gene050702:CDS |
GAAAGGATTGGTAATCAGCA+TGG | 0.589647 | 7.4:+370797 | None:intergenic |
TTGCAACCAAGTTGAAGAGA+CGG | 0.591475 | 7.4:-369621 | MS.gene050702:CDS |
GGCTGCAGGGTGTTGCAGCA+AGG | 0.592386 | 7.4:+370735 | None:intergenic |
AAACCTCCTTGAGAGCAAGC+AGG | 0.592869 | 7.4:+370646 | None:intergenic |
TCACTGTGCACGTTGTTGAT+GGG | 0.593058 | 7.4:-371017 | MS.gene050702:CDS |
TGCTCCACTATGTAATGTTG+GGG | 0.594962 | 7.4:+371624 | None:intergenic |
AGGGCAGAAAACTGATAGAC+CGG | 0.597583 | 7.4:-370204 | MS.gene050702:CDS |
AGGAAATGATTGATGACTAG+AGG | 0.599729 | 7.4:+370843 | None:intergenic |
GGAGCTACAGTTGTTGATGC+AGG | 0.599804 | 7.4:+370487 | None:intergenic |
AGAGACTGATGCGCTAGAGA+AGG | 0.599937 | 7.4:-370146 | MS.gene050702:CDS |
GAAGATGCAATTGCAATAAG+TGG | 0.600078 | 7.4:+371589 | None:intergenic |
CCTCCTTCCAAGAATCAAGA+AGG | 0.605249 | 7.4:+370035 | None:intergenic |
ATGAACAGGGTGCCTCCTTG+AGG | 0.606893 | 7.4:+371358 | None:intergenic |
AGAATGTAAAATACCTGATG+CGG | 0.606991 | 7.4:-370107 | MS.gene050702:CDS |
TGTACAAAATAACAATGAGG+AGG | 0.608346 | 7.4:-369753 | MS.gene050702:CDS |
GAGGCCAAGGAAAGCAGGGG+CGG | 0.609140 | 7.4:-369650 | MS.gene050702:CDS |
GAGGAGGGATTTCTAACCAT+GGG | 0.609248 | 7.4:-369737 | MS.gene050702:CDS |
CCCTGATTCCAACAAAATGG+AGG | 0.609942 | 7.4:-370224 | MS.gene050702:CDS |
TTGGAAGGAGGTGTCTGAAG+AGG | 0.610275 | 7.4:-370023 | MS.gene050702:intron |
GCTGCAATAGCTGTTACACT+AGG | 0.611198 | 7.4:+370598 | None:intergenic |
ATGCATTTGTAATTGTGACC+AGG | 0.611387 | 7.4:-369795 | MS.gene050702:CDS |
ATTGCAATTGCATCTTCACA+CGG | 0.615445 | 7.4:-371583 | MS.gene050702:CDS |
CTACATTTCAGCCAATAGGA+GGG | 0.615585 | 7.4:-370942 | MS.gene050702:CDS |
TTATGTGCAAATGGAGGACA+AGG | 0.617284 | 7.4:+370820 | None:intergenic |
TCTCCTGCTTGCTCTCAAGG+AGG | 0.617634 | 7.4:-370649 | MS.gene050702:CDS |
TCATCTGAATCAGAGGAGAG+TGG | 0.620785 | 7.4:-370316 | MS.gene050702:CDS |
GCAATAGCTGTTACACTAGG+AGG | 0.623513 | 7.4:+370601 | None:intergenic |
TTACAAAAGATGTTTAGTAG+AGG | 0.626106 | 7.4:-369669 | MS.gene050702:CDS |
ACATTTCAGCCAATAGGAGG+GGG | 0.626802 | 7.4:-370940 | MS.gene050702:CDS |
AACTTAAGACTCGTCGAACA+GGG | 0.627230 | 7.4:-369700 | MS.gene050702:CDS |
TCTGGAGAATAGAGCCCGAA+AGG | 0.627276 | 7.4:+369907 | None:intergenic |
GGTACCCCAACATTACATAG+TGG | 0.634415 | 7.4:-371628 | MS.gene050702:CDS |
CCTGATTCCAACAAAATGGA+GGG | 0.636366 | 7.4:-370223 | MS.gene050702:CDS |
CAAATTCCTGCACCATAAGG+GGG | 0.636736 | 7.4:-371287 | MS.gene050702:CDS |
GTTCAATCCGAGAAAACAGA+TGG | 0.637949 | 7.4:-371099 | MS.gene050702:CDS |
TCACAAAACAAAGAGAACGT+TGG | 0.639437 | 7.4:-378727 | MS.gene050702:CDS |
TAGCTGCTGCAACTGCATGG+TGG | 0.645180 | 7.4:-370567 | MS.gene050702:CDS |
GTACCAACATTGGTCTTGCG+AGG | 0.646677 | 7.4:+371646 | None:intergenic |
TGAGGAGGTGAAAAGCTTTG+GGG | 0.648977 | 7.4:+369875 | None:intergenic |
TTATTTATCAAATCATGAGG+AGG | 0.652992 | 7.4:+369860 | None:intergenic |
AAGTGAAAATCAAAATAACA+TGG | 0.654350 | 7.4:-370872 | MS.gene050702:CDS |
GCATGGTTATGTGCAAATGG+AGG | 0.655038 | 7.4:+370814 | None:intergenic |
TGAGGAGGGATTTCTAACCA+TGG | 0.655042 | 7.4:-369738 | MS.gene050702:CDS |
ATGGTGCAGGAATTTGTCTG+TGG | 0.659918 | 7.4:+371294 | None:intergenic |
GTAGAGGCCAAGGAAAGCAG+GGG | 0.661260 | 7.4:-369653 | MS.gene050702:CDS |
TCTAGTAACTGATCTTGCAG+AGG | 0.667647 | 7.4:+370400 | None:intergenic |
TTGAAGAGACGGGTCCCAAG+AGG | 0.668417 | 7.4:-369610 | MS.gene050702:CDS |
GCTACAGTTGTTGATGCAGG+AGG | 0.672632 | 7.4:+370490 | None:intergenic |
TGTGCAAATGGAGGACAAGG+AGG | 0.682903 | 7.4:+370823 | None:intergenic |
AGATGAGGAAAGGCCAACGA+CGG | 0.690777 | 7.4:-371424 | MS.gene050702:CDS |
AAACACACACAAAAGAACGA+TGG | 0.697228 | 7.4:-371165 | MS.gene050702:CDS |
GTTTGTACAAAATAACAATG+AGG | 0.699011 | 7.4:-369756 | MS.gene050702:CDS |
TCGGGCTCTATTCTCCAGAG+AGG | 0.699278 | 7.4:-369903 | MS.gene050702:CDS |
AGTATTAACAGTCCTCAAGG+AGG | 0.725209 | 7.4:-371370 | MS.gene050702:CDS |
GCCGAAGATACAGATGAACA+GGG | 0.736992 | 7.4:+371345 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr7.4 | gene | 369580 | 379353 | 369580 | ID=MS.gene050702 |
chr7.4 | mRNA | 369580 | 379353 | 369580 | ID=MS.gene050702.t1;Parent=MS.gene050702 |
chr7.4 | exon | 379335 | 379353 | 379335 | ID=MS.gene050702.t1.exon1;Parent=MS.gene050702.t1 |
chr7.4 | CDS | 379335 | 379353 | 379335 | ID=cds.MS.gene050702.t1;Parent=MS.gene050702.t1 |
chr7.4 | exon | 379230 | 379255 | 379230 | ID=MS.gene050702.t1.exon2;Parent=MS.gene050702.t1 |
chr7.4 | CDS | 379230 | 379255 | 379230 | ID=cds.MS.gene050702.t1;Parent=MS.gene050702.t1 |
chr7.4 | exon | 378657 | 378768 | 378657 | ID=MS.gene050702.t1.exon3;Parent=MS.gene050702.t1 |
chr7.4 | CDS | 378657 | 378768 | 378657 | ID=cds.MS.gene050702.t1;Parent=MS.gene050702.t1 |
chr7.4 | exon | 378519 | 378580 | 378519 | ID=MS.gene050702.t1.exon4;Parent=MS.gene050702.t1 |
chr7.4 | CDS | 378519 | 378580 | 378519 | ID=cds.MS.gene050702.t1;Parent=MS.gene050702.t1 |
chr7.4 | exon | 371543 | 371767 | 371543 | ID=MS.gene050702.t1.exon5;Parent=MS.gene050702.t1 |
chr7.4 | CDS | 371543 | 371767 | 371543 | ID=cds.MS.gene050702.t1;Parent=MS.gene050702.t1 |
chr7.4 | exon | 370024 | 371454 | 370024 | ID=MS.gene050702.t1.exon6;Parent=MS.gene050702.t1 |
chr7.4 | CDS | 370024 | 371454 | 370024 | ID=cds.MS.gene050702.t1;Parent=MS.gene050702.t1 |
chr7.4 | exon | 369580 | 369939 | 369580 | ID=MS.gene050702.t1.exon7;Parent=MS.gene050702.t1 |
chr7.4 | CDS | 369580 | 369939 | 369580 | ID=cds.MS.gene050702.t1;Parent=MS.gene050702.t1 |
Gene Sequence |
Protein sequence |