AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93413

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93413.t1 MTR_8g043650 89.451 237 25 0 1 237 1 237 5.45e-159 440
MS.gene93413.t1 MTR_1g105910 90.295 237 23 0 1 237 1 237 4.79e-154 427
MS.gene93413.t1 MTR_1g105920 92.237 219 17 0 1 219 1 219 3.45e-152 422
MS.gene93413.t1 MTR_2g030740 91.139 237 21 0 1 237 1 237 3.77e-151 420
MS.gene93413.t1 MTR_3g052920 87.215 219 28 0 1 219 1 219 5.31e-144 402
MS.gene93413.t1 MTR_1g012570 88.186 237 28 0 1 237 1 237 1.47e-143 401
MS.gene93413.t1 MTR_1g105905 82.273 220 39 0 18 237 1 220 2.41e-134 377
MS.gene93413.t1 MTR_3g052870 80.365 219 24 1 1 219 1 200 5.54e-125 353
MS.gene93413.t1 MTR_0121s0080 72.574 237 64 1 1 237 1 236 1.29e-121 345
MS.gene93413.t1 MTR_5g055100 67.932 237 76 0 1 237 1 237 2.52e-120 342
MS.gene93413.t1 MTR_3g030770 73.617 235 44 3 1 225 1 227 3.83e-120 341
MS.gene93413.t1 MTR_1g108510 73.617 235 44 3 1 225 1 227 9.71e-120 340
MS.gene93413.t1 MTR_1g106070 89.011 182 20 0 1 182 1 182 8.40e-119 336
MS.gene93413.t1 MTR_1g077360 71.111 225 65 0 1 225 1 225 1.15e-118 338
MS.gene93413.t1 MTR_2g093190 73.191 235 45 3 1 225 1 227 1.91e-117 334
MS.gene93413.t1 MTR_2g085280 66.525 236 79 0 1 236 1 236 3.43e-117 334
MS.gene93413.t1 MTR_2g085250 66.525 236 79 0 1 236 1 236 1.12e-116 333
MS.gene93413.t1 MTR_1g075600 70.667 225 66 0 1 225 1 225 1.20e-116 333
MS.gene93413.t1 MTR_5g045560 69.620 237 72 0 1 237 1 237 1.07e-113 325
MS.gene93413.t1 MTR_1g108580 71.064 235 50 3 1 225 1 227 1.11e-113 325
MS.gene93413.t1 MTR_5g053390 68.444 225 71 0 1 225 1 225 3.93e-112 321
MS.gene93413.t1 MTR_7g062350 67.265 223 71 2 16 237 27 248 9.55e-102 295
MS.gene93413.t1 MTR_1g075570 64.045 178 50 1 18 195 1 164 2.87e-69 210
MS.gene93413.t1 MTR_0121s0100 78.906 128 27 0 1 128 1 128 3.02e-69 209
MS.gene93413.t1 MTR_3g030780 75.969 129 31 0 1 129 1 129 3.11e-65 199
MS.gene93413.t1 MTR_3g080940 56.024 166 73 0 7 172 7 172 4.58e-65 201
MS.gene93413.t1 MTR_3g067910 69.608 102 31 0 21 122 2 103 6.06e-47 151
MS.gene93413.t1 MTR_2g105290 39.306 173 95 2 5 174 8 173 8.11e-41 138
MS.gene93413.t1 MTR_8g086290 41.566 166 87 2 5 167 8 166 1.65e-40 137
MS.gene93413.t1 MTR_7g028448 44.516 155 74 3 5 159 8 150 1.40e-34 122
MS.gene93413.t1 MTR_4g036915 44.516 155 74 3 5 159 8 150 1.40e-34 122
MS.gene93413.t1 MTR_1g108500 64.948 97 13 1 22 118 110 185 9.21e-32 119
MS.gene93413.t1 MTR_4g127140 37.500 184 95 4 5 175 8 184 5.51e-31 113
MS.gene93413.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 3.96e-27 99.8
MS.gene93413.t1 MTR_3g067915 52.128 94 45 0 33 126 3 96 2.22e-25 95.9
MS.gene93413.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 1.67e-24 96.3
MS.gene93413.t1 MTR_8g079502 62.319 69 26 0 9 77 2 70 3.46e-24 95.5
MS.gene93413.t1 MTR_1g054265 46.535 101 52 1 9 109 2 100 1.43e-23 93.6
MS.gene93413.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 1.43e-23 94.7
MS.gene93413.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 1.75e-23 93.6
MS.gene93413.t1 MTR_8g051580 42.857 126 67 2 9 131 2 125 2.02e-23 93.6
MS.gene93413.t1 MTR_3g067870 68.254 63 20 0 16 78 83 145 3.14e-23 92.4
MS.gene93413.t1 MTR_8g046350 40.152 132 67 3 9 135 2 126 1.34e-22 90.9
MS.gene93413.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 1.62e-20 85.1
MS.gene93413.t1 MTR_4g093970 33.939 165 86 3 10 153 29 191 3.33e-19 83.6
MS.gene93413.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 4.88e-19 82.8
MS.gene93413.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 7.22e-19 82.8
MS.gene93413.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.54e-18 80.5
MS.gene93413.t1 MTR_1g053070 36.667 150 80 3 9 157 2 137 2.42e-18 81.6
MS.gene93413.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 3.13e-18 80.1
MS.gene93413.t1 MTR_8g022970 33.544 158 92 3 8 159 17 167 7.46e-18 79.0
MS.gene93413.t1 MTR_8g033270 33.929 168 95 5 9 167 2 162 1.20e-17 79.7
MS.gene93413.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 2.06e-17 78.6
MS.gene93413.t1 MTR_2g017865 41.346 104 60 1 9 112 17 119 3.35e-17 78.6
MS.gene93413.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.70e-17 78.2
MS.gene93413.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 6.49e-17 78.6
MS.gene93413.t1 MTR_5g032520 29.108 213 127 6 9 201 2 210 6.56e-17 77.0
MS.gene93413.t1 MTR_3g437790 34.965 143 76 4 26 159 30 164 9.23e-17 75.9
MS.gene93413.t1 MTR_5g032150 30.047 213 126 8 9 201 2 211 1.22e-16 76.6
MS.gene93413.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.48e-16 75.5
MS.gene93413.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 1.59e-16 75.9
MS.gene93413.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.69e-16 76.3
MS.gene93413.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 1.73e-16 75.9
MS.gene93413.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.75e-16 76.6
MS.gene93413.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 2.14e-16 75.9
MS.gene93413.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 4.43e-16 75.9
MS.gene93413.t1 MTR_0003s0590 42.683 82 47 0 9 90 2 83 6.85e-16 75.1
MS.gene93413.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.41e-15 73.9
MS.gene93413.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.59e-15 73.9
MS.gene93413.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.62e-15 69.3
MS.gene93413.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 1.68e-15 74.7
MS.gene93413.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.92e-15 73.2
MS.gene93413.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.95e-15 73.6
MS.gene93413.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.17e-15 73.2
MS.gene93413.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 2.91e-15 72.4
MS.gene93413.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 3.86e-15 72.0
MS.gene93413.t1 MTR_3g109930 32.143 140 79 3 27 159 20 150 4.29e-15 71.2
MS.gene93413.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 6.49e-15 71.6
MS.gene93413.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 6.59e-15 71.6
MS.gene93413.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 6.64e-15 68.9
MS.gene93413.t1 MTR_4g109810 29.167 240 137 12 9 230 2 226 7.29e-15 72.0
MS.gene93413.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.79e-14 70.5
MS.gene93413.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 3.74e-14 68.9
MS.gene93413.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 3.95e-14 69.7
MS.gene93413.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 4.07e-14 65.5
MS.gene93413.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 6.49e-14 69.3
MS.gene93413.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 6.98e-14 68.2
MS.gene93413.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 8.08e-14 68.9
MS.gene93413.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 8.46e-14 68.9
MS.gene93413.t1 MTR_3g113030 28.814 177 98 5 9 181 2 154 1.53e-13 68.2
MS.gene93413.t1 MTR_4g051538 28.631 241 138 8 5 232 5 224 2.16e-12 64.7
MS.gene93413.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 3.17e-12 63.2
MS.gene93413.t1 MTR_2g045020 31.288 163 84 7 7 159 21 165 8.92e-12 62.4
MS.gene93413.t1 MTR_4g036050 29.375 160 100 5 9 158 2 158 2.42e-11 61.2
MS.gene93413.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.82e-11 60.8
MS.gene93413.t1 MTR_4g108720 28.409 176 104 9 9 172 2 167 3.06e-11 62.8
MS.gene93413.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 3.23e-11 60.8
MS.gene93413.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 3.36e-11 61.2
MS.gene93413.t1 MTR_1g041615 36.190 105 58 2 20 123 17 113 9.85e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93413.t1 AT5G60440 55.914 186 75 3 5 187 3 184 8.76e-64 201
MS.gene93413.t1 AT2G24840 50.000 164 71 4 6 163 60 218 8.68e-46 154
MS.gene93413.t1 AT1G65360 40.000 225 124 6 5 225 3 220 2.50e-42 143
MS.gene93413.t1 AT1G01530 43.229 192 97 4 4 192 2 184 2.64e-42 144
MS.gene93413.t1 AT4G36590 46.951 164 77 4 5 160 3 164 6.48e-40 138
MS.gene93413.t1 AT2G34440 45.299 117 55 2 9 121 2 113 7.57e-27 102
MS.gene93413.t1 AT3G04100 32.716 162 105 3 2 159 7 168 3.79e-26 101
MS.gene93413.t1 AT3G66656 43.697 119 63 1 9 123 2 120 1.33e-25 99.0
MS.gene93413.t1 AT1G72350 36.184 152 64 4 9 160 43 161 7.33e-23 93.2
MS.gene93413.t1 AT1G28460 29.586 169 115 2 5 169 4 172 2.13e-20 85.5
MS.gene93413.t1 AT1G29962 29.651 172 114 4 5 169 4 175 2.29e-19 82.8
MS.gene93413.t1 AT4G22950 49.351 77 39 0 10 86 3 79 2.37e-19 82.4
MS.gene93413.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.75e-19 83.6
MS.gene93413.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.26e-19 83.6
MS.gene93413.t1 AT4G09960 46.512 86 45 1 9 93 3 88 3.46e-19 83.6
MS.gene93413.t1 AT4G09960 46.512 86 45 1 9 93 12 97 4.69e-19 83.2
MS.gene93413.t1 AT4G22950 40.909 110 62 1 10 119 3 109 5.65e-19 82.8
MS.gene93413.t1 AT4G22950 40.909 110 62 1 10 119 3 109 5.65e-19 82.8
MS.gene93413.t1 AT4G09960 46.512 86 45 1 9 93 28 113 6.70e-19 83.2
MS.gene93413.t1 AT2G45660 52.941 68 32 0 10 77 3 70 1.04e-18 80.5
MS.gene93413.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.48e-18 82.0
MS.gene93413.t1 AT4G09960 46.512 86 45 1 9 93 97 182 1.79e-18 83.2
MS.gene93413.t1 AT2G45660 52.941 68 32 0 10 77 3 70 3.23e-18 80.5
MS.gene93413.t1 AT2G22540 39.855 138 63 5 9 132 2 133 3.65e-18 80.9
MS.gene93413.t1 AT2G22540 39.855 138 63 5 9 132 2 133 3.65e-18 80.9
MS.gene93413.t1 AT4G18960 31.513 238 137 10 5 226 15 242 4.04e-18 80.9
MS.gene93413.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.42e-17 76.6
MS.gene93413.t1 AT3G57230 47.059 68 36 0 9 76 2 69 4.09e-17 75.9
MS.gene93413.t1 AT2G42830 47.368 76 40 0 1 76 9 84 4.12e-17 78.2
MS.gene93413.t1 AT2G42830 47.368 76 40 0 1 76 9 84 4.38e-17 78.2
MS.gene93413.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.72e-17 77.0
MS.gene93413.t1 AT3G58780 50.704 71 35 0 6 76 14 84 5.10e-17 77.8
MS.gene93413.t1 AT3G58780 50.704 71 35 0 6 76 20 90 5.19e-17 78.2
MS.gene93413.t1 AT3G61120 51.471 68 33 0 9 76 2 69 6.85e-17 77.4
MS.gene93413.t1 AT5G51870 50.000 72 36 0 5 76 21 92 7.81e-17 76.3
MS.gene93413.t1 AT4G24540 51.471 68 33 0 9 76 2 69 8.90e-17 76.6
MS.gene93413.t1 AT1G17310 36.905 168 65 5 8 170 47 178 8.98e-17 76.6
MS.gene93413.t1 AT5G51870 53.731 67 31 0 10 76 3 69 9.02e-17 76.6
MS.gene93413.t1 AT3G58780 50.704 71 35 0 6 76 14 84 9.87e-17 77.8
MS.gene93413.t1 AT1G17310 36.905 168 65 5 8 170 58 189 1.02e-16 76.6
MS.gene93413.t1 AT5G51870 53.731 67 31 0 10 76 13 79 1.06e-16 76.6
MS.gene93413.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.27e-16 75.1
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.33e-16 73.6
MS.gene93413.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.39e-16 76.3
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.68e-16 74.7
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.68e-16 74.7
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.68e-16 74.7
MS.gene93413.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.73e-16 75.9
MS.gene93413.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.77e-16 77.8
MS.gene93413.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.80e-16 75.1
MS.gene93413.t1 AT5G13790 43.011 93 44 1 9 101 2 85 1.89e-16 76.6
MS.gene93413.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.98e-16 75.9
MS.gene93413.t1 AT1G28450 27.950 161 110 3 5 159 4 164 2.01e-16 75.1
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.12e-16 74.3
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.12e-16 74.3
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.12e-16 74.3
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.12e-16 74.3
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.12e-16 74.3
MS.gene93413.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.12e-16 74.7
MS.gene93413.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.29e-16 75.9
MS.gene93413.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.29e-16 75.9
MS.gene93413.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.37e-16 75.1
MS.gene93413.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.50e-16 74.7
MS.gene93413.t1 AT1G77980 38.095 105 64 1 9 112 2 106 2.54e-16 77.0
MS.gene93413.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.86e-16 76.3
MS.gene93413.t1 AT3G57390 50.000 68 34 0 9 76 2 69 3.17e-16 75.9
MS.gene93413.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.38e-16 73.9
MS.gene93413.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.38e-16 73.9
MS.gene93413.t1 AT1G69120 43.373 83 44 1 9 91 2 81 5.33e-16 74.7
MS.gene93413.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.39e-16 74.3
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.83e-16 73.9
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.83e-16 73.9
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.88e-16 73.9
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.88e-16 73.9
MS.gene93413.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.88e-16 73.9
MS.gene93413.t1 AT5G51860 52.239 67 32 0 10 76 3 69 7.60e-16 73.9
MS.gene93413.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
MS.gene93413.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
MS.gene93413.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
MS.gene93413.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
MS.gene93413.t1 AT5G60910 49.296 71 33 1 9 79 2 69 8.47e-16 74.3
MS.gene93413.t1 AT2G22630 47.059 68 36 0 9 76 2 69 9.33e-16 73.9
MS.gene93413.t1 AT2G22630 47.059 68 36 0 9 76 2 69 9.33e-16 73.9
MS.gene93413.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.57e-16 73.9
MS.gene93413.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.57e-16 73.9
MS.gene93413.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.17e-15 74.3
MS.gene93413.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.42e-15 73.9
MS.gene93413.t1 AT2G22540 39.130 138 59 6 9 132 2 128 1.49e-15 73.6
MS.gene93413.t1 AT1G24260 30.041 243 130 10 9 234 2 221 1.66e-15 73.6
MS.gene93413.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.86e-15 73.6
MS.gene93413.t1 AT3G54340 47.143 70 35 1 9 76 2 71 1.87e-15 73.6
MS.gene93413.t1 AT5G15800 28.333 240 131 9 9 224 2 224 2.97e-15 73.2
MS.gene93413.t1 AT5G20240 47.143 70 35 1 9 76 2 71 5.13e-15 70.5
MS.gene93413.t1 AT5G15800 49.275 69 34 1 9 76 2 70 5.48e-15 72.4
MS.gene93413.t1 AT2G14210 46.377 69 36 1 9 76 2 70 6.29e-15 72.0
MS.gene93413.t1 AT1G24260 30.040 253 131 11 9 234 2 235 6.31e-15 72.4
MS.gene93413.t1 AT5G20240 47.143 70 35 1 9 76 2 71 7.61e-15 71.2
MS.gene93413.t1 AT2G14210 46.377 69 36 1 9 76 2 70 7.89e-15 71.6
MS.gene93413.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.77e-14 69.7
MS.gene93413.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.84e-14 71.2
MS.gene93413.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.89e-14 71.2
MS.gene93413.t1 AT3G02310 47.826 69 35 1 9 76 2 70 2.12e-14 69.7
MS.gene93413.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.32e-14 70.5
MS.gene93413.t1 AT1G24260 29.804 255 128 12 9 234 2 234 2.94e-14 70.5
MS.gene93413.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.96e-14 70.9
MS.gene93413.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.04e-14 69.3
MS.gene93413.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.35e-14 69.3
MS.gene93413.t1 AT5G23260 44.318 88 43 2 9 90 2 89 3.57e-14 70.1
MS.gene93413.t1 AT5G23260 44.318 88 43 2 9 90 2 89 3.72e-14 70.1
MS.gene93413.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.79e-14 68.9
MS.gene93413.t1 AT2G03710 47.143 70 35 2 9 76 2 71 5.10e-14 68.6
MS.gene93413.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.37e-14 68.6
MS.gene93413.t1 AT3G02310 47.826 69 35 1 9 76 2 70 5.46e-14 69.7
MS.gene93413.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.85e-14 68.6
MS.gene93413.t1 AT5G65060 46.377 69 36 1 9 76 2 70 7.03e-14 68.6
MS.gene93413.t1 AT1G47760 34.483 116 61 3 9 123 2 103 7.71e-14 68.2
MS.gene93413.t1 AT2G03710 45.714 70 36 1 9 76 2 71 1.17e-13 68.9
MS.gene93413.t1 AT2G03710 45.714 70 36 1 9 76 2 71 1.17e-13 68.9
MS.gene93413.t1 AT1G71692 44.286 70 38 1 9 77 2 71 2.32e-13 67.4
MS.gene93413.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.95e-13 65.5
MS.gene93413.t1 AT5G65070 42.029 69 39 1 9 76 2 70 5.86e-13 65.9
MS.gene93413.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.11e-12 65.5
MS.gene93413.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.12e-12 65.9
MS.gene93413.t1 AT1G18750 38.667 75 44 1 9 81 2 76 5.79e-12 65.1
MS.gene93413.t1 AT1G18750 38.667 75 44 1 9 81 2 76 6.21e-12 65.1
MS.gene93413.t1 AT5G65070 47.368 57 30 0 9 65 2 58 6.24e-12 63.5
MS.gene93413.t1 AT1G18750 38.667 75 44 1 9 81 2 76 6.89e-12 64.7
MS.gene93413.t1 AT1G46408 36.134 119 67 4 10 119 5 123 1.28e-11 63.2
MS.gene93413.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.30e-11 63.5
MS.gene93413.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.51e-11 63.5
MS.gene93413.t1 AT5G65080 42.667 75 40 2 5 76 3 77 2.74e-11 61.2
MS.gene93413.t1 AT4G37435 40.278 72 42 1 9 79 2 73 3.25e-11 60.8
MS.gene93413.t1 AT2G03060 28.070 171 106 7 9 164 2 170 3.35e-11 62.8
MS.gene93413.t1 AT2G03060 28.070 171 106 7 9 164 2 170 3.35e-11 62.8
MS.gene93413.t1 AT2G03060 28.070 171 106 7 9 164 2 170 3.35e-11 62.8
MS.gene93413.t1 AT2G03060 29.379 177 96 9 9 164 2 170 3.42e-11 62.8
MS.gene93413.t1 AT2G26320 40.000 70 40 1 9 76 18 87 4.76e-11 58.5
MS.gene93413.t1 AT5G65080 43.548 62 35 0 1 62 1 62 6.44e-11 60.5
MS.gene93413.t1 AT5G27130 40.000 85 47 2 2 82 6 90 7.59e-11 61.2

Find 61 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACAAATGAGGTTGCAAAAT+AGG 0.202485 1.1:+76031844 None:intergenic
TTTGTTTGGTTTCAACAATA+TGG 0.234944 1.1:-76031827 MS.gene93413:CDS
AGGCGACCGAAACTCAATTT+TGG 0.290261 1.1:-76032098 MS.gene93413:CDS
CTTGTGGAGGATTTGGTTGA+TGG 0.298622 1.1:+76031899 None:intergenic
ATCTGAGCTTGTGGAGGATT+TGG 0.314155 1.1:+76031892 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 1.1:-76032078 MS.gene93413:CDS
ATTGCATGGTACCATTGTTT+TGG 0.328016 1.1:+76032235 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.345119 1.1:-76031826 MS.gene93413:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.346261 1.1:-76032037 MS.gene93413:CDS
ACAAATGAGGTTGCAAAATA+GGG 0.377315 1.1:+76031845 None:intergenic
TGCTGATAGGCTTGTAATCC+AGG 0.383576 1.1:-76031986 MS.gene93413:CDS
TTGTTGCTCATCATGCTGAT+AGG 0.403840 1.1:-76031999 MS.gene93413:CDS
TCTTCTCGATGTCCAGTAGT+TGG 0.408924 1.1:+76032151 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 1.1:-76032068 MS.gene93413:CDS
TCTATGACCGTATCAACATT+GGG 0.442152 1.1:+76032282 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 1.1:+76032044 None:intergenic
CACTTGCAAGTTGCTTTCGT+TGG 0.444023 1.1:+76032425 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1.1:-76032077 MS.gene93413:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 1.1:-76032067 MS.gene93413:CDS
AGCCCACCAAAATTGAGTTT+CGG 0.472023 1.1:+76032092 None:intergenic
CCTTCTTGAATAATTCAAGT+TGG 0.480564 1.1:+76032043 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 1.1:+76032066 None:intergenic
GTGGAGGATTTGGTTGATGG+TGG 0.481407 1.1:+76031902 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.499244 1.1:-76032043 MS.gene93413:CDS
AGTATTGAGCTCGCGCACAT+TGG 0.504609 1.1:+76032191 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 1.1:+76032281 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 1.1:+76032365 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 1.1:+76032065 None:intergenic
GACTCAGATCAACCAACTAC+TGG 0.537057 1.1:-76032163 MS.gene93413:CDS
AGAGCTGAGCGACTTGCGCA+AGG 0.537990 1.1:-76032118 MS.gene93413:CDS
GGGCTCGGATCAAAAGAATC+CGG 0.538178 1.1:+76031780 None:intergenic
TGGCCACCCCAATGTTGATA+CGG 0.542985 1.1:-76032289 MS.gene93413:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.1:-76032401 MS.gene93413:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 1.1:-76031825 MS.gene93413:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1.1:+76031832 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 1.1:-76031799 MS.gene93413:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.562158 1.1:-76032488 None:intergenic
AACGAAAATACCTTCTCCCC+AGG 0.564049 1.1:+76032312 None:intergenic
GCTGGAAACATCTGAGCTTG+TGG 0.568464 1.1:+76031883 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.1:-76032402 MS.gene93413:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 1.1:-76032363 MS.gene93413:CDS
GGATTTGGTTGATGGTGGAG+AGG 0.589428 1.1:+76031907 None:intergenic
AGCAACATCTGCACCACAGA+GGG 0.595144 1.1:+76032350 None:intergenic
TGCGCTTCAACCATGTCGAG+TGG 0.601726 1.1:-76032492 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 1.1:+76031968 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 1.1:-76031824 MS.gene93413:CDS
CGAGTCCCGCCCCAAAACAA+TGG 0.608244 1.1:-76032246 MS.gene93413:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.1:+76032388 None:intergenic
ATGGTGGAGAGGAATGTTCG+AGG 0.612109 1.1:+76031918 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 1.1:-76031985 MS.gene93413:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 1.1:-76031823 MS.gene93413:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1.1:-76032226 MS.gene93413:CDS
TGGTGGAGAGGAATGTTCGA+GGG 0.641320 1.1:+76031919 None:intergenic
GGAAACATCTGAGCTTGTGG+AGG 0.645017 1.1:+76031886 None:intergenic
CTCGGATCAAAAGAATCCGG+AGG 0.655674 1.1:+76031783 None:intergenic
TGACCGTATCAACATTGGGG+TGG 0.665619 1.1:+76032286 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.678771 1.1:+76031784 None:intergenic
ATGAGCCTCAATGAATTGCA+TGG 0.679678 1.1:+76032221 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.1:-76032477 MS.gene93413:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 1.1:+76032283 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 1.1:+76032349 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.1:76031821-76031840 None:intergenic 20.0%
!! CTTCTTGAATAATTCAAGTT+GGG + chr1.1:76032228-76032247 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr1.1:76032443-76032462 MS.gene93413:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr1.1:76032442-76032461 MS.gene93413:CDS 25.0%
!!! ATTCAGTTTTTTGTTGGAAA+CGG - chr1.1:76032323-76032342 MS.gene93413:CDS 25.0%
AAAAACTGAATGGTTTGAGT+AGG + chr1.1:76032314-76032333 None:intergenic 30.0%
AACAAATGAGGTTGCAAAAT+AGG + chr1.1:76032428-76032447 None:intergenic 30.0%
ACAAATGAGGTTGCAAAATA+GGG + chr1.1:76032427-76032446 None:intergenic 30.0%
CCAACTTGAATTATTCAAGA+AGG - chr1.1:76032226-76032245 MS.gene93413:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG + chr1.1:76032229-76032248 None:intergenic 30.0%
GTTTCCAACAAAAAACTGAA+TGG + chr1.1:76032324-76032343 None:intergenic 30.0%
TGAATTATTCAAGAAGGCTT+TGG - chr1.1:76032232-76032251 MS.gene93413:CDS 30.0%
TTGTTGAAACCAAACAAATG+AGG + chr1.1:76032440-76032459 None:intergenic 30.0%
! ATTTTGCAACCTCATTTGTT+TGG - chr1.1:76032428-76032447 MS.gene93413:CDS 30.0%
! TGTTTGGTTTCAACAATATG+GGG - chr1.1:76032444-76032463 MS.gene93413:CDS 30.0%
!!! CAAACCATTCAGTTTTTTGT+TGG - chr1.1:76032317-76032336 MS.gene93413:CDS 30.0%
ATCTATGACCGTATCAACAT+TGG + chr1.1:76031991-76032010 None:intergenic 35.0%
TCTATGACCGTATCAACATT+GGG + chr1.1:76031990-76032009 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.1:76032037-76032056 None:intergenic 35.0%
! GTTTGGTTTCAACAATATGG+GGG - chr1.1:76032445-76032464 MS.gene93413:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.1:76032036-76032055 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+GGG - chr1.1:76032446-76032465 MS.gene93413:CDS 35.0%
AGCCCACCAAAATTGAGTTT+CGG + chr1.1:76032180-76032199 None:intergenic 40.0%
ATGAGCCTCAATGAATTGCA+TGG + chr1.1:76032051-76032070 None:intergenic 40.0%
CTATGACCGTATCAACATTG+GGG + chr1.1:76031989-76032008 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1.1:76032043-76032062 MS.gene93413:CDS 40.0%
TTGTTGCTCATCATGCTGAT+AGG - chr1.1:76032270-76032289 MS.gene93413:CDS 40.0%
!! GACCGAAACTCAATTTTGGT+GGG - chr1.1:76032175-76032194 MS.gene93413:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.1:76032035-76032054 None:intergenic 40.0%
AACGAAAATACCTTCTCCCC+AGG + chr1.1:76031960-76031979 None:intergenic 45.0%
ATCTGAGCTTGTGGAGGATT+TGG + chr1.1:76032380-76032399 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.1:76031884-76031903 None:intergenic 45.0%
GACTCAGATCAACCAACTAC+TGG - chr1.1:76032106-76032125 MS.gene93413:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG - chr1.1:76032284-76032303 MS.gene93413:CDS 45.0%
TCTTCTCGATGTCCAGTAGT+TGG + chr1.1:76032121-76032140 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG - chr1.1:76032283-76032302 MS.gene93413:CDS 45.0%
! AGGCGACCGAAACTCAATTT+TGG - chr1.1:76032171-76032190 MS.gene93413:CDS 45.0%
! CACTTGCAAGTTGCTTTCGT+TGG + chr1.1:76031847-76031866 None:intergenic 45.0%
! CGACCGAAACTCAATTTTGG+TGG - chr1.1:76032174-76032193 MS.gene93413:CDS 45.0%
! CTTGTGGAGGATTTGGTTGA+TGG + chr1.1:76032373-76032392 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG - chr1.1:76032202-76032221 MS.gene93413:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.1:76031812-76031831 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1.1:76031940-76031959 MS.gene93413:CDS 45.0%
!! GAAACTCAATTTTGGTGGGC+TGG - chr1.1:76032179-76032198 MS.gene93413:CDS 45.0%
!! GGGTTCTGAAAAAACTGTGC+TGG + chr1.1:76032407-76032426 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1.1:76031941-76031960 MS.gene93413:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+CGG + chr1.1:76032032-76032051 None:intergenic 45.0%
!!! GGGGAGAAGGTATTTTCGTT+TGG - chr1.1:76031960-76031979 MS.gene93413:CDS 45.0%
AGCAACATCTGCACCACAGA+GGG + chr1.1:76031922-76031941 None:intergenic 50.0%
GCCCTATTCATCCCATCAAC+GGG + chr1.1:76032206-76032225 None:intergenic 50.0%
GCTGGAAACATCTGAGCTTG+TGG + chr1.1:76032389-76032408 None:intergenic 50.0%
GGAAACATCTGAGCTTGTGG+AGG + chr1.1:76032386-76032405 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG + chr1.1:76032207-76032226 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG - chr1.1:76032449-76032468 MS.gene93413:CDS 50.0%
TGACCGTATCAACATTGGGG+TGG + chr1.1:76031986-76032005 None:intergenic 50.0%
TGGCCACCCCAATGTTGATA+CGG - chr1.1:76031980-76031999 MS.gene93413:CDS 50.0%
TGGTGGAGAGGAATGTTCGA+GGG + chr1.1:76032353-76032372 None:intergenic 50.0%
TTCAACAATATGGGGGGAGG+AGG - chr1.1:76032452-76032471 MS.gene93413:CDS 50.0%
! AGTATTGAGCTCGCGCACAT+TGG + chr1.1:76032081-76032100 None:intergenic 50.0%
! ATGGTGGAGAGGAATGTTCG+AGG + chr1.1:76032354-76032373 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - chr1.1:76032201-76032220 MS.gene93413:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1.1:76031947-76031966 MS.gene93413:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.1:76031939-76031958 MS.gene93413:CDS 50.0%
!! GGATTTGGTTGATGGTGGAG+AGG + chr1.1:76032365-76032384 None:intergenic 50.0%
!! GTGGAGGATTTGGTTGATGG+TGG + chr1.1:76032370-76032389 None:intergenic 50.0%
!!! TGGTACCATTGTTTTGGGGC+GGG + chr1.1:76032031-76032050 None:intergenic 50.0%
AACAATATGGGGGGAGGAGG+TGG - chr1.1:76032455-76032474 MS.gene93413:CDS 55.0%
AGTGAGCTTTGCACCCTCTG+TGG - chr1.1:76031906-76031925 MS.gene93413:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG + chr1.1:76031923-76031942 None:intergenic 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1.1:76031792-76031811 MS.gene93413:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG + chr1.1:76031907-76031926 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.1:76031867-76031886 MS.gene93413:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.1:76031868-76031887 MS.gene93413:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG + chr1.1:76032304-76032323 None:intergenic 55.0%
AGAGCTGAGCGACTTGCGCA+AGG - chr1.1:76032151-76032170 MS.gene93413:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG - chr1.1:76032461-76032480 MS.gene93413:CDS 60.0%
CGAGTCCCGCCCCAAAACAA+TGG - chr1.1:76032023-76032042 MS.gene93413:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG - chr1.1:76032470-76032489 MS.gene93413:CDS 60.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - chr1.1:76032192-76032211 MS.gene93413:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - chr1.1:76032191-76032210 MS.gene93413:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76031789 76032502 76031789 ID=MS.gene93413
chr1.1 mRNA 76031789 76032502 76031789 ID=MS.gene93413.t1;Parent=MS.gene93413
chr1.1 exon 76031789 76032502 76031789 ID=MS.gene93413.t1.exon1;Parent=MS.gene93413.t1
chr1.1 CDS 76031789 76032502 76031789 ID=cds.MS.gene93413.t1;Parent=MS.gene93413.t1
Gene Sequence

>MS.gene93413

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGACCAACGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCGCCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCATCGCAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAACTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCGACTTGCGCAAGGCGACCGAAACTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGATGAGCTTAAGAAACTTGTTGCTCATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCAGTTTTTTGTTGGAAACGGTTCACCCTCGAACATTCCTCTCCACCATCAACCAAATCCTCCACAAGCTCAGATGTTTCCAGCACAGTTTTTTCAGAACCCTATTTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene93413.t1

MSSGRKSRGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSDLRKATETQFWWAGPVDGMNRAQLELFKKALDELKKLVAHHADRLVIQGAPTQTIQFFVGNGSPSNIPLHHQPNPPQAQMFPAQFFQNPILQPHLFGFNNMGGGGGYGPSGFF