AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93415

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93415.t1 MTR_8g043650 92.405 237 18 0 1 237 1 237 4.36e-164 453
MS.gene93415.t1 MTR_1g105910 95.536 224 10 0 1 224 1 224 2.24e-161 446
MS.gene93415.t1 MTR_1g105920 90.411 219 21 0 1 219 1 219 1.39e-149 416
MS.gene93415.t1 MTR_2g030740 88.186 237 28 0 1 237 1 237 4.03e-148 412
MS.gene93415.t1 MTR_1g012570 89.030 237 26 0 1 237 1 237 3.13e-146 407
MS.gene93415.t1 MTR_3g052920 85.388 219 32 0 1 219 1 219 1.44e-141 395
MS.gene93415.t1 MTR_1g105905 84.545 220 34 0 18 237 1 220 2.29e-138 387
MS.gene93415.t1 MTR_3g052870 80.365 219 24 1 1 219 1 200 1.73e-124 352
MS.gene93415.t1 MTR_0121s0080 71.308 237 67 1 1 237 1 236 8.87e-121 343
MS.gene93415.t1 MTR_3g030770 73.077 234 45 3 1 224 1 226 1.23e-117 335
MS.gene93415.t1 MTR_1g108510 73.077 234 45 3 1 224 1 226 1.70e-116 332
MS.gene93415.t1 MTR_1g106070 85.714 182 26 0 1 182 1 182 3.48e-115 327
MS.gene93415.t1 MTR_5g055100 65.823 237 81 0 1 237 1 237 4.39e-115 329
MS.gene93415.t1 MTR_2g093190 71.795 234 48 3 1 224 1 226 5.18e-114 326
MS.gene93415.t1 MTR_1g077360 68.444 225 71 0 1 225 1 225 7.64e-114 326
MS.gene93415.t1 MTR_1g075600 69.643 224 68 0 1 224 1 224 5.25e-113 323
MS.gene93415.t1 MTR_2g085280 65.254 236 82 0 1 236 1 236 5.48e-113 323
MS.gene93415.t1 MTR_2g085250 65.254 236 82 0 1 236 1 236 1.83e-112 322
MS.gene93415.t1 MTR_1g108580 73.611 216 49 1 1 216 1 208 8.77e-111 318
MS.gene93415.t1 MTR_5g053390 67.857 224 72 0 1 224 1 224 2.36e-110 317
MS.gene93415.t1 MTR_5g045560 67.932 237 76 0 1 237 1 237 6.60e-110 316
MS.gene93415.t1 MTR_7g062350 65.919 223 74 2 16 237 27 248 2.05e-99 290
MS.gene93415.t1 MTR_1g075570 62.921 178 52 1 18 195 1 164 9.51e-70 211
MS.gene93415.t1 MTR_0121s0100 79.688 128 26 0 1 128 1 128 5.11e-69 208
MS.gene93415.t1 MTR_3g030780 75.194 129 32 0 1 129 1 129 2.08e-64 196
MS.gene93415.t1 MTR_3g080940 52.222 180 85 1 7 186 7 185 5.92e-64 198
MS.gene93415.t1 MTR_3g067910 67.647 102 33 0 21 122 2 103 1.33e-45 148
MS.gene93415.t1 MTR_2g105290 40.351 171 92 2 5 172 8 171 2.84e-41 139
MS.gene93415.t1 MTR_8g086290 42.169 166 86 2 5 167 8 166 6.24e-41 138
MS.gene93415.t1 MTR_7g028448 45.806 155 72 3 5 159 8 150 5.04e-36 125
MS.gene93415.t1 MTR_4g036915 45.806 155 72 3 5 159 8 150 5.04e-36 125
MS.gene93415.t1 MTR_4g127140 39.227 181 90 4 5 172 8 181 4.75e-32 115
MS.gene93415.t1 MTR_1g108500 58.407 113 24 2 8 118 94 185 4.85e-31 117
MS.gene93415.t1 MTR_3g067875 85.714 56 8 0 18 73 1 56 2.40e-28 102
MS.gene93415.t1 MTR_3g067870 71.429 63 18 0 16 78 83 145 2.54e-24 95.1
MS.gene93415.t1 MTR_3g067915 64.179 67 24 0 60 126 30 96 9.67e-24 91.7
MS.gene93415.t1 MTR_1g047550 60.870 69 27 0 9 77 2 70 1.79e-23 93.6
MS.gene93415.t1 MTR_8g079502 60.870 69 27 0 9 77 2 70 4.41e-23 92.4
MS.gene93415.t1 MTR_4g131030 40.517 116 54 3 9 109 2 117 1.61e-22 92.0
MS.gene93415.t1 MTR_8g051580 42.063 126 68 2 9 131 2 125 1.95e-22 90.9
MS.gene93415.t1 MTR_1g063160 45.536 112 56 3 9 118 2 110 2.61e-22 90.5
MS.gene93415.t1 MTR_1g054265 45.545 101 53 1 9 109 2 100 2.70e-22 90.1
MS.gene93415.t1 MTR_8g046350 40.171 117 63 2 9 125 2 111 3.77e-21 87.0
MS.gene93415.t1 MTR_4g094632 41.509 106 60 1 9 114 2 105 3.21e-20 84.3
MS.gene93415.t1 MTR_1g053070 36.667 150 80 3 9 157 2 137 3.60e-19 83.6
MS.gene93415.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 5.58e-19 82.8
MS.gene93415.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 1.10e-18 82.4
MS.gene93415.t1 MTR_4g093970 57.576 66 28 0 10 75 29 94 1.11e-18 82.0
MS.gene93415.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 2.39e-18 80.1
MS.gene93415.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 5.19e-18 79.7
MS.gene93415.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.50e-17 79.0
MS.gene93415.t1 MTR_2g017865 30.270 185 100 4 9 167 17 198 2.48e-17 79.0
MS.gene93415.t1 MTR_3g102570 33.333 171 90 6 9 162 2 165 3.30e-17 79.3
MS.gene93415.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 3.36e-17 78.6
MS.gene93415.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 4.97e-17 77.8
MS.gene93415.t1 MTR_5g032150 29.384 211 130 6 9 201 2 211 5.55e-17 77.4
MS.gene93415.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 6.35e-17 76.3
MS.gene93415.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 7.84e-17 77.4
MS.gene93415.t1 MTR_5g032520 28.169 213 129 6 9 201 2 210 1.31e-16 76.3
MS.gene93415.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.38e-16 76.3
MS.gene93415.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 2.06e-16 75.9
MS.gene93415.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 2.14e-16 75.9
MS.gene93415.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 2.37e-16 75.5
MS.gene93415.t1 MTR_8g022970 32.911 158 93 3 8 159 17 167 3.06e-16 74.3
MS.gene93415.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.18e-16 76.3
MS.gene93415.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 4.94e-16 76.3
MS.gene93415.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 7.27e-16 74.7
MS.gene93415.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.21e-15 74.3
MS.gene93415.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.23e-15 73.9
MS.gene93415.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.38e-15 73.9
MS.gene93415.t1 MTR_7g016630 25.822 213 144 5 9 207 2 214 2.20e-15 73.6
MS.gene93415.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.21e-15 73.2
MS.gene93415.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 2.36e-15 73.2
MS.gene93415.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 2.44e-15 68.6
MS.gene93415.t1 MTR_5g046790 29.348 184 102 7 9 166 2 183 2.44e-15 72.8
MS.gene93415.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.48e-15 72.8
MS.gene93415.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.55e-15 73.2
MS.gene93415.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 4.38e-15 72.0
MS.gene93415.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 5.68e-15 69.3
MS.gene93415.t1 MTR_3g437790 33.566 143 78 4 26 159 30 164 8.51e-15 70.5
MS.gene93415.t1 MTR_4g109810 28.455 246 143 12 9 236 2 232 1.13e-14 71.2
MS.gene93415.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 1.96e-14 69.3
MS.gene93415.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 3.20e-14 70.1
MS.gene93415.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 3.67e-14 68.9
MS.gene93415.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 5.21e-14 69.7
MS.gene93415.t1 MTR_3g109930 31.429 140 80 3 27 159 20 150 5.39e-14 68.2
MS.gene93415.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 5.96e-14 69.3
MS.gene93415.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 8.16e-14 68.9
MS.gene93415.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 9.07e-14 64.3
MS.gene93415.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 1.79e-13 67.8
MS.gene93415.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 1.09e-12 64.3
MS.gene93415.t1 MTR_4g051538 32.278 158 95 3 5 162 5 150 1.59e-12 65.1
MS.gene93415.t1 MTR_4g108720 26.738 187 115 7 9 183 2 178 4.26e-12 65.1
MS.gene93415.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.18e-11 62.0
MS.gene93415.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.21e-11 61.6
MS.gene93415.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.40e-11 62.0
MS.gene93415.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.41e-11 62.0
MS.gene93415.t1 MTR_2g045020 32.075 159 80 7 7 155 21 161 3.38e-11 60.8
MS.gene93415.t1 MTR_1g041615 34.513 113 64 2 20 132 17 119 7.34e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93415.t1 AT5G60440 53.723 188 80 3 5 189 3 186 8.76e-61 193
MS.gene93415.t1 AT2G24840 49.080 163 72 4 6 162 60 217 2.85e-43 147
MS.gene93415.t1 AT1G65360 38.667 225 123 6 5 223 3 218 6.87e-40 137
MS.gene93415.t1 AT1G01530 40.000 210 103 4 4 192 2 209 1.11e-39 137
MS.gene93415.t1 AT4G36590 45.732 164 79 4 5 160 3 164 2.09e-38 134
MS.gene93415.t1 AT2G34440 45.299 117 55 2 9 121 2 113 6.18e-27 102
MS.gene93415.t1 AT3G66656 41.985 131 71 2 9 134 2 132 7.02e-26 99.8
MS.gene93415.t1 AT3G04100 31.579 152 100 2 2 149 7 158 8.29e-25 97.8
MS.gene93415.t1 AT1G72350 35.374 147 62 3 9 155 43 156 5.03e-23 93.6
MS.gene93415.t1 AT4G18960 29.098 244 135 8 5 226 15 242 1.32e-19 85.1
MS.gene93415.t1 AT1G28460 31.429 140 93 1 5 141 4 143 1.39e-19 83.6
MS.gene93415.t1 AT4G22950 49.351 77 39 0 10 86 3 79 2.99e-19 82.4
MS.gene93415.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.75e-19 83.2
MS.gene93415.t1 AT4G09960 46.512 86 45 1 9 93 2 87 4.13e-19 83.2
MS.gene93415.t1 AT4G09960 46.512 86 45 1 9 93 3 88 4.39e-19 83.2
MS.gene93415.t1 AT4G09960 46.512 86 45 1 9 93 12 97 6.32e-19 82.8
MS.gene93415.t1 AT4G09960 46.512 86 45 1 9 93 28 113 7.97e-19 82.8
MS.gene93415.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.07e-18 82.4
MS.gene93415.t1 AT2G45660 52.941 68 32 0 10 77 3 70 1.28e-18 80.1
MS.gene93415.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.30e-18 81.6
MS.gene93415.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.30e-18 81.6
MS.gene93415.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.54e-18 82.8
MS.gene93415.t1 AT2G45660 52.941 68 32 0 10 77 3 70 3.27e-18 80.5
MS.gene93415.t1 AT1G29962 28.488 172 116 4 5 169 4 175 1.17e-17 78.2
MS.gene93415.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.82e-17 79.0
MS.gene93415.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.82e-17 79.0
MS.gene93415.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.24e-17 77.4
MS.gene93415.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.65e-17 77.8
MS.gene93415.t1 AT4G24540 36.567 134 73 4 9 132 2 133 3.88e-17 77.8
MS.gene93415.t1 AT3G57230 47.059 68 36 0 9 76 2 69 4.09e-17 75.9
MS.gene93415.t1 AT2G42830 47.368 76 40 0 1 76 9 84 4.90e-17 77.8
MS.gene93415.t1 AT2G42830 47.368 76 40 0 1 76 9 84 5.31e-17 77.8
MS.gene93415.t1 AT5G51870 50.000 72 36 0 5 76 21 92 5.33e-17 76.6
MS.gene93415.t1 AT1G22130 36.441 118 73 2 9 125 2 118 6.22e-17 79.0
MS.gene93415.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.38e-17 77.8
MS.gene93415.t1 AT5G51870 53.731 67 31 0 10 76 3 69 6.50e-17 77.0
MS.gene93415.t1 AT3G58780 50.704 71 35 0 6 76 20 90 6.97e-17 77.8
MS.gene93415.t1 AT5G51870 53.731 67 31 0 10 76 13 79 7.55e-17 77.0
MS.gene93415.t1 AT3G61120 51.471 68 33 0 9 76 2 69 8.22e-17 77.4
MS.gene93415.t1 AT5G10140 50.725 69 33 1 9 76 2 70 8.76e-17 75.5
MS.gene93415.t1 AT3G57390 50.000 68 34 0 9 76 2 69 8.96e-17 77.0
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 9.14e-17 73.9
MS.gene93415.t1 AT4G37940 48.529 68 35 0 9 76 2 69 9.73e-17 76.6
MS.gene93415.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.11e-16 76.6
MS.gene93415.t1 AT1G77980 38.095 105 64 1 9 112 2 106 1.14e-16 78.2
MS.gene93415.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.24e-16 77.4
MS.gene93415.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.25e-16 75.5
MS.gene93415.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.25e-16 75.5
MS.gene93415.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.35e-16 77.0
MS.gene93415.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.35e-16 77.0
MS.gene93415.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.35e-16 77.0
MS.gene93415.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.35e-16 77.0
MS.gene93415.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.54e-16 75.5
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.55e-16 74.7
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.55e-16 74.7
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.55e-16 74.7
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.55e-16 74.7
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.55e-16 74.7
MS.gene93415.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.64e-16 75.1
MS.gene93415.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.64e-16 76.3
MS.gene93415.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.64e-16 76.3
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.70e-16 74.7
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.70e-16 74.7
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.70e-16 74.7
MS.gene93415.t1 AT5G13790 43.011 93 44 1 9 101 2 85 2.03e-16 76.6
MS.gene93415.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.07e-16 76.3
MS.gene93415.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.75e-16 76.3
MS.gene93415.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.87e-16 73.9
MS.gene93415.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.87e-16 73.9
MS.gene93415.t1 AT1G69120 40.659 91 51 1 9 99 2 89 3.97e-16 75.1
MS.gene93415.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.31e-16 75.1
MS.gene93415.t1 AT2G22630 47.059 68 36 0 9 76 2 69 4.31e-16 75.1
MS.gene93415.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.86e-16 74.3
MS.gene93415.t1 AT3G54340 29.487 156 86 3 9 162 2 135 5.32e-16 74.7
MS.gene93415.t1 AT1G28450 29.371 143 95 3 5 141 4 146 5.94e-16 73.9
MS.gene93415.t1 AT5G51860 52.239 67 32 0 10 76 3 69 6.26e-16 74.3
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.36e-16 73.9
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.36e-16 73.9
MS.gene93415.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.58e-16 74.7
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.10e-16 73.9
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.10e-16 73.9
MS.gene93415.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.10e-16 73.9
MS.gene93415.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.19e-16 73.9
MS.gene93415.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.19e-16 73.9
MS.gene93415.t1 AT1G69120 40.659 91 51 1 9 99 2 89 9.22e-16 74.7
MS.gene93415.t1 AT1G26310 47.826 69 35 1 9 76 2 70 9.86e-16 74.7
MS.gene93415.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.23e-15 74.3
MS.gene93415.t1 AT5G23260 44.330 97 46 3 2 90 9 105 1.96e-15 73.9
MS.gene93415.t1 AT5G23260 44.330 97 46 3 2 90 9 105 2.02e-15 73.9
MS.gene93415.t1 AT5G20240 47.143 70 35 1 9 76 2 71 2.76e-15 71.2
MS.gene93415.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.77e-15 73.2
MS.gene93415.t1 AT5G65050 28.497 193 119 8 9 193 2 183 3.24e-15 71.6
MS.gene93415.t1 AT5G65050 30.052 193 113 6 9 193 2 180 3.35e-15 71.6
MS.gene93415.t1 AT5G23260 45.455 88 42 2 9 90 2 89 3.46e-15 72.8
MS.gene93415.t1 AT2G22540 50.000 68 29 1 9 76 2 64 4.05e-15 72.4
MS.gene93415.t1 AT5G23260 45.455 88 42 2 9 90 2 89 4.11e-15 72.8
MS.gene93415.t1 AT5G15800 49.275 69 34 1 9 76 2 70 4.40e-15 72.8
MS.gene93415.t1 AT5G20240 47.143 70 35 1 9 76 2 71 5.17e-15 71.6
MS.gene93415.t1 AT1G17310 51.899 79 36 1 8 86 47 123 6.64e-15 71.6
MS.gene93415.t1 AT2G14210 46.377 69 36 1 9 76 2 70 7.70e-15 71.6
MS.gene93415.t1 AT1G17310 51.899 79 36 1 8 86 58 134 8.45e-15 71.6
MS.gene93415.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.04e-14 71.2
MS.gene93415.t1 AT3G58780 53.333 60 28 0 6 65 14 73 1.70e-14 70.9
MS.gene93415.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.89e-14 70.1
MS.gene93415.t1 AT1G24260 28.226 248 142 9 9 234 2 235 1.90e-14 70.9
MS.gene93415.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.22e-14 69.3
MS.gene93415.t1 AT3G58780 53.333 60 28 0 6 65 14 73 2.45e-14 70.9
MS.gene93415.t1 AT1G24260 29.114 237 140 8 9 234 2 221 2.53e-14 70.5
MS.gene93415.t1 AT5G65050 28.431 204 116 6 9 193 2 194 3.42e-14 69.3
MS.gene93415.t1 AT2G03710 53.571 56 26 0 9 64 2 57 3.79e-14 68.9
MS.gene93415.t1 AT1G47760 32.450 151 81 5 9 156 2 134 4.02e-14 68.9
MS.gene93415.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.84e-14 69.7
MS.gene93415.t1 AT5G65060 46.377 69 36 1 9 76 2 70 7.47e-14 68.2
MS.gene93415.t1 AT2G03710 47.143 70 35 2 9 76 2 71 7.54e-14 69.3
MS.gene93415.t1 AT5G65060 46.377 69 36 1 9 76 2 70 7.66e-14 68.2
MS.gene93415.t1 AT2G03710 47.143 70 35 2 9 76 2 71 7.93e-14 69.3
MS.gene93415.t1 AT5G65060 46.377 69 36 1 9 76 2 70 9.44e-14 68.2
MS.gene93415.t1 AT1G24260 53.571 56 26 0 9 64 2 57 9.45e-14 68.9
MS.gene93415.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.23e-13 68.2
MS.gene93415.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.01e-13 65.5
MS.gene93415.t1 AT5G65070 42.029 69 39 1 9 76 2 70 5.40e-13 65.9
MS.gene93415.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.00e-12 65.5
MS.gene93415.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.10e-12 65.9
MS.gene93415.t1 AT1G18750 25.806 186 119 6 9 177 2 185 4.41e-12 65.1
MS.gene93415.t1 AT1G18750 25.806 186 119 6 9 177 2 185 4.77e-12 65.1
MS.gene93415.t1 AT5G65070 47.368 57 30 0 9 65 2 58 5.12e-12 63.9
MS.gene93415.t1 AT1G69540 32.727 110 66 3 9 117 2 104 1.66e-11 63.5
MS.gene93415.t1 AT4G37435 40.278 72 42 1 9 79 2 73 1.78e-11 61.6
MS.gene93415.t1 AT1G69540 32.727 110 66 3 9 117 2 104 1.97e-11 63.2
MS.gene93415.t1 AT1G18750 37.333 75 45 1 9 81 2 76 3.95e-11 62.4
MS.gene93415.t1 AT2G26320 40.000 70 40 1 9 76 18 87 4.13e-11 58.9
MS.gene93415.t1 AT5G65080 42.029 69 39 1 9 76 9 77 5.40e-11 60.5
MS.gene93415.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.05e-11 61.6
MS.gene93415.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.05e-11 61.6
MS.gene93415.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.05e-11 61.6
MS.gene93415.t1 AT2G03060 39.286 84 48 3 9 90 2 84 7.05e-11 61.6
MS.gene93415.t1 AT5G65080 43.548 62 35 0 1 62 1 62 7.70e-11 60.1

Find 52 sgRNAs with CRISPR-Local

Find 77 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 1.1:+76019995 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.303436 1.1:-76020181 MS.gene93415:CDS
GATCAACCAGCTACTGGATA+TGG 0.309226 1.1:-76020260 MS.gene93415:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1.1:+76020338 None:intergenic
TCCCGTTGATGGGATGAATA+AGG 0.357899 1.1:-76020170 MS.gene93415:CDS
ATGTTGCAACCTCACTTGTT+TGG 0.376512 1.1:-76019944 MS.gene93415:CDS
AAGGAGACTAAGAAACTTGT+TGG 0.377140 1.1:-76020118 MS.gene93415:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 1.1:-76020089 MS.gene93415:CDS
TTGTTGGACATCATGCTGAT+AGG 0.402994 1.1:-76020102 MS.gene93415:CDS
GGGCTCAGATCAAAAGAATC+TGG 0.407516 1.1:+76019883 None:intergenic
CTTGTTTGGCTTCAACAATA+CGG 0.429938 1.1:-76019930 MS.gene93415:CDS
GCCTTATTCATCCCATCAAC+GGG 0.435983 1.1:+76020169 None:intergenic
GCGGAGGATTTGGTTGATGA+TGG 0.439291 1.1:+76020005 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1.1:-76020180 MS.gene93415:CDS
GACTCAGATCAACCAGCTAC+TGG 0.455039 1.1:-76020266 MS.gene93415:CDS
TCTTCTCCATATCCAGTAGC+TGG 0.455839 1.1:+76020254 None:intergenic
AGGCGACCGAGAGTCAGTTT+TGG 0.458130 1.1:-76020201 MS.gene93415:CDS
TTGTTTGGCTTCAACAATAC+GGG 0.463078 1.1:-76019929 MS.gene93415:CDS
GTTGGAAACATTTGAGTTTG+CGG 0.508183 1.1:+76019986 None:intergenic
GTCTATGACCGTATCAACAT+TGG 0.509296 1.1:+76020384 None:intergenic
GGCCTTATTCATCCCATCAA+CGG 0.514786 1.1:+76020168 None:intergenic
GCAGAGAGTGCAAAGCTCAC+TGG 0.516982 1.1:+76020468 None:intergenic
AACAAGTGAGGTTGCAACAT+AGG 0.539918 1.1:+76019947 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1.1:+76020385 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1.1:-76020392 MS.gene93415:CDS
GCTCGCGCACATTGGCGCTA+CGG 0.552531 1.1:+76020302 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.1:-76020504 MS.gene93415:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.555433 1.1:-76020591 None:intergenic
GTGGGACTCGAGAGAGATAA+CGG 0.555728 1.1:+76020362 None:intergenic
AGCCCACCAAAACTGACTCT+CGG 0.565176 1.1:+76020195 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.1:-76020505 MS.gene93415:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1.1:+76020415 None:intergenic
AGAGCTGAGCAACTTGCGCA+AGG 0.589828 1.1:-76020221 MS.gene93415:CDS
AGTATTGAGCTCGCGCACAT+TGG 0.590853 1.1:+76020294 None:intergenic
TGACCGTATCAACATTGGGT+TGG 0.600758 1.1:+76020389 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 1.1:+76020071 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.1:+76020491 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 1.1:+76020010 None:intergenic
TGTTTGGCTTCAACAATACG+GGG 0.616084 1.1:-76019928 MS.gene93415:CDS
AGTGAGCTTTGCACTCTCTG+CGG 0.622154 1.1:-76020466 MS.gene93415:CDS
TGAGCTTCAACCATGTCGAG+TGG 0.629588 1.1:-76020595 None:intergenic
CTCAGATCAAAAGAATCTGG+AGG 0.633945 1.1:+76019886 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 1.1:-76020088 MS.gene93415:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1.1:-76020329 MS.gene93415:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1.1:-76020349 MS.gene93415:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 1.1:+76020324 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 1.1:+76019989 None:intergenic
TTGTTGAAGCCAAACAAGTG+AGG 0.651690 1.1:+76019935 None:intergenic
TCAGATCAAAAGAATCTGGA+GGG 0.666536 1.1:+76019887 None:intergenic
TTTGGCTTCAACAATACGGG+GGG 0.687957 1.1:-76019926 MS.gene93415:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.1:-76020580 MS.gene93415:CDS
GTTTGGCTTCAACAATACGG+GGG 0.701007 1.1:-76019927 MS.gene93415:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG + chr1.1:76020331-76020350 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.1:76019924-76019943 None:intergenic 20.0%
! AAAAATTGAAAGGTTTGAGT+AGG + chr1.1:76020417-76020436 None:intergenic 25.0%
! ATTTCCACCAAAAAATTGAA+AGG + chr1.1:76020427-76020446 None:intergenic 25.0%
!!! ACTCAAACCTTTCAATTTTT+TGG - chr1.1:76020417-76020436 MS.gene93415:CDS 25.0%
!!! ATTTTTCAAAAAGGCTTTGA+AGG - chr1.1:76020338-76020357 MS.gene93415:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1.1:76020329-76020348 MS.gene93415:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1.1:76020332-76020351 None:intergenic 25.0%
!!! TTTCAATTTTTTGGTGGAAA+TGG - chr1.1:76020426-76020445 MS.gene93415:CDS 25.0%
!!! CAAACCTTTCAATTTTTTGG+TGG - chr1.1:76020420-76020439 MS.gene93415:CDS 30.0%
AAGGAGACTAAGAAACTTGT+TGG - chr1.1:76020357-76020376 MS.gene93415:CDS 35.0%
TCTATGACCGTATCAACATT+GGG + chr1.1:76020093-76020112 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.1:76020140-76020159 None:intergenic 35.0%
! CTTGTTTGGCTTCAACAATA+CGG - chr1.1:76020545-76020564 MS.gene93415:CDS 35.0%
! GGATTCTGAAAAAACTGTGT+TGG + chr1.1:76020510-76020529 None:intergenic 35.0%
! GTTGGAAACATTTGAGTTTG+CGG + chr1.1:76020492-76020511 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.1:76020139-76020158 None:intergenic 35.0%
! TTGTTTGGCTTCAACAATAC+GGG - chr1.1:76020546-76020565 MS.gene93415:CDS 35.0%
AACAAGTGAGGTTGCAACAT+AGG + chr1.1:76020531-76020550 None:intergenic 40.0%
AATGAAAATACCTTCTCCCC+AGG + chr1.1:76020063-76020082 None:intergenic 40.0%
ATGTTGCAACCTCACTTGTT+TGG - chr1.1:76020531-76020550 MS.gene93415:CDS 40.0%
GTCTATGACCGTATCAACAT+TGG + chr1.1:76020094-76020113 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1.1:76020146-76020165 MS.gene93415:CDS 40.0%
TTGTTGAAGCCAAACAAGTG+AGG + chr1.1:76020543-76020562 None:intergenic 40.0%
TTGTTGGACATCATGCTGAT+AGG - chr1.1:76020373-76020392 MS.gene93415:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + chr1.1:76020483-76020502 None:intergenic 40.0%
! TGTTTGGCTTCAACAATACG+GGG - chr1.1:76020547-76020566 MS.gene93415:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.1:76020138-76020157 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - chr1.1:76020063-76020082 MS.gene93415:CDS 40.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.1:76019987-76020006 None:intergenic 45.0%
GATCAACCAGCTACTGGATA+TGG - chr1.1:76020215-76020234 MS.gene93415:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG - chr1.1:76020387-76020406 MS.gene93415:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr1.1:76020154-76020173 None:intergenic 45.0%
TCTTCTCCATATCCAGTAGC+TGG + chr1.1:76020224-76020243 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG + chr1.1:76020089-76020108 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG - chr1.1:76020386-76020405 MS.gene93415:CDS 45.0%
TGGCCAACCCAATGTTGATA+CGG - chr1.1:76020083-76020102 MS.gene93415:CDS 45.0%
! GCCTTATTCATCCCATCAAC+GGG + chr1.1:76020309-76020328 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG + chr1.1:76020489-76020508 None:intergenic 45.0%
! GTTTGGCTTCAACAATACGG+GGG - chr1.1:76020548-76020567 MS.gene93415:CDS 45.0%
! TCCCGTTGATGGGATGAATA+AGG - chr1.1:76020305-76020324 MS.gene93415:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.1:76019915-76019934 None:intergenic 45.0%
! TTTGGCTTCAACAATACGGG+GGG - chr1.1:76020549-76020568 MS.gene93415:CDS 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1.1:76020043-76020062 MS.gene93415:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG + chr1.1:76020468-76020487 None:intergenic 45.0%
!! GGCCTTATTCATCCCATCAA+CGG + chr1.1:76020310-76020329 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1.1:76020044-76020063 MS.gene93415:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1.1:76020135-76020154 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1.1:76020134-76020153 None:intergenic 45.0%
AGTGAGCTTTGCACTCTCTG+CGG - chr1.1:76020009-76020028 MS.gene93415:CDS 50.0%
GACTCAGATCAACCAGCTAC+TGG - chr1.1:76020209-76020228 MS.gene93415:CDS 50.0%
GTGGGACTCGAGAGAGATAA+CGG + chr1.1:76020116-76020135 None:intergenic 50.0%
! AGCCCACCAAAACTGACTCT+CGG + chr1.1:76020283-76020302 None:intergenic 50.0%
! AGTATTGAGCTCGCGCACAT+TGG + chr1.1:76020184-76020203 None:intergenic 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1.1:76020050-76020069 MS.gene93415:CDS 50.0%
!! GACCGAGAGTCAGTTTTGGT+GGG - chr1.1:76020278-76020297 MS.gene93415:CDS 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG + chr1.1:76020473-76020492 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.1:76020042-76020061 MS.gene93415:CDS 50.0%
AGAGCTGAGCAACTTGCGCA+AGG - chr1.1:76020254-76020273 MS.gene93415:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1.1:76020126-76020145 MS.gene93415:CDS 55.0%
CTTCAACAATACGGGGGGAG+GGG - chr1.1:76020554-76020573 MS.gene93415:CDS 55.0%
GCTTCAACAATACGGGGGGA+GGG - chr1.1:76020553-76020572 MS.gene93415:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1.1:76019895-76019914 MS.gene93415:CDS 55.0%
TTCAACAATACGGGGGGAGG+GGG - chr1.1:76020555-76020574 MS.gene93415:CDS 55.0%
! AGGCGACCGAGAGTCAGTTT+TGG - chr1.1:76020274-76020293 MS.gene93415:CDS 55.0%
! GCAGAGAGTGCAAAGCTCAC+TGG + chr1.1:76020010-76020029 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.1:76019970-76019989 MS.gene93415:CDS 55.0%
!! AGGTTTGAGTAGGAGCACCC+TGG + chr1.1:76020407-76020426 None:intergenic 55.0%
!! CGACCGAGAGTCAGTTTTGG+TGG - chr1.1:76020277-76020296 MS.gene93415:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.1:76019971-76019990 MS.gene93415:CDS 55.0%
!! GAGAGTCAGTTTTGGTGGGC+TGG - chr1.1:76020282-76020301 MS.gene93415:CDS 55.0%
GGCTTCAACAATACGGGGGG+AGG - chr1.1:76020552-76020571 MS.gene93415:CDS 60.0%
AACAATACGGGGGGAGGGGG+TGG - chr1.1:76020558-76020577 MS.gene93415:CDS 65.0%
GCTCGCGCACATTGGCGCTA+CGG + chr1.1:76020176-76020195 None:intergenic 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - chr1.1:76020295-76020314 MS.gene93415:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - chr1.1:76020294-76020313 MS.gene93415:CDS 65.0%
ACGGGGGGAGGGGGTGGATA+TGG - chr1.1:76020564-76020583 MS.gene93415:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76019892 76020605 76019892 ID=MS.gene93415
chr1.1 mRNA 76019892 76020605 76019892 ID=MS.gene93415.t1;Parent=MS.gene93415
chr1.1 exon 76019892 76020605 76019892 ID=MS.gene93415.t1.exon1;Parent=MS.gene93415.t1
chr1.1 CDS 76019892 76020605 76019892 ID=cds.MS.gene93415.t1;Parent=MS.gene93415.t1
Gene Sequence

>MS.gene93415

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGACCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACTCAGTTGACTCAGATCAACCAGCTACTGGATATGGAGAAGAAACGTGCTGAAGAGCTGAGCAACTTGCGCAAGGCGACCGAGAGTCAGTTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAAGGCCCAACTTGAATTTTTCAAAAAGGCTTTGAAGGAGACTAAGAAACTTGTTGGACATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCTTTCAATTTTTTGGTGGAAATGGTTCATCTTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAACACAGTTTTTTCAGAATCCTATGTTGCAACCTCACTTGTTTGGCTTCAACAATACGGGGGGAGGGGGTGGATATGGACCCTCCAGATTCTTTTGA
Protein sequence

>MS.gene93415.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDMEKKRAEELSNLRKATESQFWWAGPVDGMNKAQLEFFKKALKETKKLVGHHADRLVIQGAPTQTFQFFGGNGSSSNMPLHHQPNPPQTQMFPTQFFQNPMLQPHLFGFNNTGGGGGYGPSRFF