AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93416

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93416.t1 MTR_1g105920 93.077 130 9 0 1 130 1 130 1.78e-85 249
MS.gene93416.t1 MTR_1g105910 93.077 130 9 0 1 130 1 130 4.32e-85 248
MS.gene93416.t1 MTR_3g052870 94.444 126 7 0 1 126 1 126 2.35e-84 246
MS.gene93416.t1 MTR_8g043650 92.308 130 10 0 1 130 1 130 3.94e-84 246
MS.gene93416.t1 MTR_1g012570 90.698 129 12 0 1 129 1 129 4.89e-83 243
MS.gene93416.t1 MTR_3g052920 87.692 130 16 0 1 130 1 130 7.34e-81 237
MS.gene93416.t1 MTR_1g106070 87.692 130 16 0 1 130 1 130 3.61e-80 234
MS.gene93416.t1 MTR_2g030740 86.923 130 17 0 1 130 1 130 1.54e-78 231
MS.gene93416.t1 MTR_1g108510 80.000 130 26 0 1 130 1 130 9.59e-73 216
MS.gene93416.t1 MTR_3g030770 80.000 130 26 0 1 130 1 130 3.93e-72 215
MS.gene93416.t1 MTR_1g105905 89.381 113 12 0 18 130 1 113 1.28e-70 211
MS.gene93416.t1 MTR_2g093190 76.923 130 30 0 1 130 1 130 6.53e-68 204
MS.gene93416.t1 MTR_1g108580 76.154 130 31 0 1 130 1 130 8.58e-68 204
MS.gene93416.t1 MTR_0121s0100 75.000 128 32 0 1 128 1 128 2.66e-67 199
MS.gene93416.t1 MTR_5g045560 74.219 128 33 0 1 128 1 128 9.37e-66 199
MS.gene93416.t1 MTR_1g075600 74.219 128 33 0 1 128 1 128 4.61e-65 197
MS.gene93416.t1 MTR_1g077360 71.875 128 36 0 1 128 1 128 1.58e-64 196
MS.gene93416.t1 MTR_3g030780 72.868 129 35 0 1 129 1 129 3.17e-64 192
MS.gene93416.t1 MTR_0121s0080 75.194 129 32 0 1 129 1 129 3.52e-63 192
MS.gene93416.t1 MTR_2g085280 70.312 128 38 0 1 128 1 128 9.81e-63 191
MS.gene93416.t1 MTR_2g085250 70.312 128 38 0 1 128 1 128 1.06e-62 191
MS.gene93416.t1 MTR_5g055100 69.291 127 39 0 1 127 1 127 2.27e-61 188
MS.gene93416.t1 MTR_5g053390 67.969 128 41 0 1 128 1 128 3.34e-57 177
MS.gene93416.t1 MTR_3g080940 62.602 123 46 0 7 129 7 129 1.32e-53 167
MS.gene93416.t1 MTR_3g067910 64.078 103 37 0 21 123 2 104 1.61e-45 144
MS.gene93416.t1 MTR_7g062350 66.972 109 35 1 16 123 27 135 9.78e-45 146
MS.gene93416.t1 MTR_1g075570 61.261 111 29 1 18 128 1 97 1.18e-40 133
MS.gene93416.t1 MTR_2g105290 42.520 127 63 2 5 128 8 127 1.07e-33 115
MS.gene93416.t1 MTR_8g086290 43.307 127 62 2 5 128 8 127 2.39e-32 112
MS.gene93416.t1 MTR_7g028448 47.200 125 58 2 5 129 8 124 2.27e-31 109
MS.gene93416.t1 MTR_4g036915 47.200 125 58 2 5 129 8 124 2.27e-31 109
MS.gene93416.t1 MTR_1g108500 60.825 97 17 1 22 118 110 185 2.89e-30 111
MS.gene93416.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 7.33e-30 102
MS.gene93416.t1 MTR_4g127140 43.307 127 62 2 5 128 8 127 3.21e-27 99.8
MS.gene93416.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 6.84e-26 95.5
MS.gene93416.t1 MTR_1g047550 57.971 69 29 0 9 77 2 70 1.69e-24 92.8
MS.gene93416.t1 MTR_1g063160 42.342 111 61 2 9 118 2 110 3.52e-24 91.7
MS.gene93416.t1 MTR_8g051580 40.800 125 69 2 9 130 2 124 4.29e-24 91.7
MS.gene93416.t1 MTR_8g079502 42.857 112 59 3 9 118 2 110 5.74e-24 91.3
MS.gene93416.t1 MTR_3g067915 61.194 67 26 0 60 126 30 96 1.40e-23 87.8
MS.gene93416.t1 MTR_1g054265 41.593 113 64 1 9 121 2 112 2.14e-23 89.4
MS.gene93416.t1 MTR_8g046350 38.889 126 68 3 9 130 2 122 4.25e-23 88.6
MS.gene93416.t1 MTR_4g131030 37.302 126 63 4 9 118 2 127 4.88e-23 89.7
MS.gene93416.t1 MTR_4g094632 39.623 106 62 1 9 114 2 105 3.16e-21 83.6
MS.gene93416.t1 MTR_4g094638 39.623 106 63 1 9 113 2 107 8.00e-20 80.5
MS.gene93416.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 2.26e-18 77.8
MS.gene93416.t1 MTR_1g053070 42.574 101 57 1 9 108 2 102 2.83e-18 77.8
MS.gene93416.t1 MTR_4g102530 47.945 73 38 0 10 82 3 75 4.73e-18 76.6
MS.gene93416.t1 MTR_3g452380 40.566 106 53 1 3 108 11 106 4.97e-18 77.4
MS.gene93416.t1 MTR_4g093970 53.030 66 31 0 10 75 29 94 8.11e-18 76.6
MS.gene93416.t1 MTR_5g066180 48.529 68 35 0 9 76 2 69 4.68e-17 74.3
MS.gene93416.t1 MTR_8g033270 48.529 68 35 0 9 76 2 69 9.64e-17 73.9
MS.gene93416.t1 MTR_1g101970 47.059 68 36 0 9 76 2 69 1.04e-16 72.8
MS.gene93416.t1 MTR_2g017865 37.273 110 68 1 9 118 17 125 1.67e-16 73.6
MS.gene93416.t1 MTR_8g033220 44.872 78 43 0 10 87 3 80 2.00e-16 72.8
MS.gene93416.t1 MTR_8g033220 44.872 78 43 0 10 87 3 80 2.12e-16 72.8
MS.gene93416.t1 MTR_4g109830 44.928 69 37 1 9 76 2 70 2.50e-16 72.4
MS.gene93416.t1 MTR_8g087860 46.667 75 40 0 2 76 11 85 2.51e-16 72.8
MS.gene93416.t1 MTR_6g464720 46.377 69 36 1 9 76 2 70 2.92e-16 72.8
MS.gene93416.t1 MTR_7g075870 36.364 110 68 1 10 119 3 110 3.17e-16 72.0
MS.gene93416.t1 MTR_2g009890 45.588 68 37 0 9 76 2 69 1.23e-15 71.2
MS.gene93416.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.10e-15 70.1
MS.gene93416.t1 MTR_5g021270 47.143 70 35 1 9 76 2 71 2.11e-15 70.1
MS.gene93416.t1 MTR_6g015975 46.377 69 36 1 9 76 2 70 2.27e-15 70.1
MS.gene93416.t1 MTR_0003s0590 33.562 146 66 3 9 123 2 147 2.78e-15 70.1
MS.gene93416.t1 MTR_3g102570 39.423 104 60 3 9 111 2 103 2.83e-15 70.9
MS.gene93416.t1 MTR_7g016600 46.377 69 36 1 9 76 2 70 3.42e-15 69.7
MS.gene93416.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 5.39e-15 68.9
MS.gene93416.t1 MTR_7g075870 36.036 111 68 2 10 119 3 111 5.40e-15 68.6
MS.gene93416.t1 MTR_5g031000 45.588 68 37 0 9 76 2 69 5.50e-15 68.9
MS.gene93416.t1 MTR_5g046790 36.170 94 48 3 9 90 2 95 6.19e-15 68.6
MS.gene93416.t1 MTR_8g066260 43.478 69 38 1 9 76 2 70 6.71e-15 68.9
MS.gene93416.t1 MTR_5g032150 44.118 68 38 0 9 76 2 69 8.51e-15 68.6
MS.gene93416.t1 MTR_7g016630 40.580 69 40 1 9 76 2 70 1.02e-14 68.6
MS.gene93416.t1 MTR_5g032520 44.118 68 38 0 9 76 2 69 1.03e-14 68.2
MS.gene93416.t1 MTR_2g461710 51.786 56 27 0 9 64 2 57 1.19e-14 63.9
MS.gene93416.t1 MTR_1g038300 45.714 70 36 1 9 76 2 71 2.33e-14 67.4
MS.gene93416.t1 MTR_4g084740 43.421 76 41 2 9 83 2 76 2.55e-14 68.2
MS.gene93416.t1 MTR_3g088615 41.429 70 39 1 9 76 2 71 2.55e-14 66.2
MS.gene93416.t1 MTR_5g046870 44.928 69 37 1 9 76 2 70 2.69e-14 64.7
MS.gene93416.t1 MTR_1g029670 43.939 66 36 1 9 74 2 66 4.48e-14 65.5
MS.gene93416.t1 MTR_5g066960 45.614 57 31 0 9 65 2 58 9.05e-14 62.0
MS.gene93416.t1 MTR_3g113030 42.857 70 38 1 9 76 2 71 1.70e-13 65.1
MS.gene93416.t1 MTR_3g084980 51.786 56 27 0 9 64 2 57 1.92e-13 65.1
MS.gene93416.t1 MTR_8g097090 50.000 56 28 0 9 64 2 57 3.14e-13 64.3
MS.gene93416.t1 MTR_7g075850 42.857 70 38 1 9 76 2 71 3.34e-13 64.3
MS.gene93416.t1 MTR_8g022970 41.333 75 44 0 8 82 17 91 3.72e-13 63.2
MS.gene93416.t1 MTR_4g109810 48.214 56 29 0 9 64 2 57 4.54e-13 63.9
MS.gene93416.t1 MTR_4g093030 39.189 74 45 0 9 82 2 75 7.03e-12 59.3
MS.gene93416.t1 MTR_4g051538 40.741 81 48 0 1 81 1 81 9.98e-12 60.1
MS.gene93416.t1 MTR_3g437790 46.296 54 28 1 26 78 30 83 3.23e-11 58.2
MS.gene93416.t1 MTR_4g036050 37.143 70 43 1 9 77 2 71 4.80e-11 57.4
MS.gene93416.t1 MTR_4g036050 37.143 70 43 1 9 77 2 71 4.88e-11 57.8
MS.gene93416.t1 MTR_4g036050 37.143 70 43 1 9 77 2 71 5.02e-11 57.8
MS.gene93416.t1 MTR_4g036050 37.143 70 43 1 9 77 2 71 5.14e-11 57.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93416.t1 AT5G60440 63.281 128 45 1 5 130 3 130 2.38e-52 167
MS.gene93416.t1 AT4G36590 52.419 124 52 2 5 123 3 124 1.01e-36 125
MS.gene93416.t1 AT1G01530 56.604 106 44 1 4 109 2 105 3.42e-36 124
MS.gene93416.t1 AT2G24840 50.000 128 56 3 6 130 60 182 2.01e-35 123
MS.gene93416.t1 AT1G65360 48.246 114 57 1 5 118 3 114 1.32e-33 117
MS.gene93416.t1 AT2G34440 43.363 113 63 1 9 121 2 113 8.27e-28 100
MS.gene93416.t1 AT3G66656 42.017 119 65 1 9 123 2 120 1.05e-25 95.9
MS.gene93416.t1 AT1G72350 53.425 73 32 1 9 81 43 113 3.16e-22 87.8
MS.gene93416.t1 AT3G04100 33.913 115 73 1 2 113 7 121 8.97e-21 83.6
MS.gene93416.t1 AT4G22950 47.368 76 40 0 10 85 3 78 2.33e-19 79.3
MS.gene93416.t1 AT2G45660 41.748 103 53 3 10 106 3 104 6.52e-19 77.8
MS.gene93416.t1 AT4G22950 49.296 71 36 0 10 80 3 73 1.77e-18 78.2
MS.gene93416.t1 AT4G22950 49.296 71 36 0 10 80 3 73 1.77e-18 78.2
MS.gene93416.t1 AT2G45660 50.000 68 34 0 10 77 3 70 2.00e-18 77.8
MS.gene93416.t1 AT2G45650 50.000 68 34 0 9 76 2 69 2.94e-18 78.2
MS.gene93416.t1 AT4G09960 48.529 68 35 0 9 76 2 69 5.25e-18 76.6
MS.gene93416.t1 AT4G09960 48.529 68 35 0 9 76 2 69 5.62e-18 77.0
MS.gene93416.t1 AT4G09960 48.529 68 35 0 9 76 3 70 5.77e-18 77.0
MS.gene93416.t1 AT4G09960 48.529 68 35 0 9 76 12 79 7.00e-18 76.6
MS.gene93416.t1 AT4G09960 48.529 68 35 0 9 76 28 95 9.39e-18 76.6
MS.gene93416.t1 AT4G09960 48.529 68 35 0 9 76 97 164 1.74e-17 77.0
MS.gene93416.t1 AT5G51870 50.746 67 33 0 10 76 3 69 2.62e-17 74.7
MS.gene93416.t1 AT5G51870 50.746 67 33 0 10 76 3 69 2.75e-17 73.9
MS.gene93416.t1 AT5G51870 50.746 67 33 0 10 76 3 69 4.59e-17 74.3
MS.gene93416.t1 AT5G51870 50.746 67 33 0 10 76 13 79 5.68e-17 74.3
MS.gene93416.t1 AT5G51870 47.222 72 38 0 5 76 21 92 5.87e-17 73.6
MS.gene93416.t1 AT4G18960 38.318 107 56 1 2 108 11 107 6.35e-17 74.3
MS.gene93416.t1 AT5G23260 45.745 94 43 3 5 90 12 105 8.90e-17 74.3
MS.gene93416.t1 AT5G23260 43.478 92 46 2 5 90 14 105 9.07e-17 74.3
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 9.64e-17 70.9
MS.gene93416.t1 AT1G28460 34.694 98 64 0 5 102 4 101 1.02e-16 72.8
MS.gene93416.t1 AT3G57230 44.118 68 38 0 9 76 2 69 1.15e-16 71.6
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.30e-16 71.6
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.30e-16 71.6
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.30e-16 71.6
MS.gene93416.t1 AT4G24540 37.069 116 68 2 9 124 2 112 1.47e-16 72.8
MS.gene93416.t1 AT5G23260 45.455 88 42 2 9 90 2 89 1.52e-16 73.6
MS.gene93416.t1 AT5G23260 45.455 88 42 2 9 90 2 89 1.61e-16 73.2
MS.gene93416.t1 AT3G61120 48.529 68 35 0 9 76 2 69 1.63e-16 73.2
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.88e-16 71.2
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.88e-16 71.2
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.88e-16 71.2
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.88e-16 71.2
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 1.88e-16 71.2
MS.gene93416.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.18e-16 72.4
MS.gene93416.t1 AT4G37940 45.588 68 37 0 9 76 2 69 2.20e-16 72.8
MS.gene93416.t1 AT2G42830 48.529 68 35 0 9 76 17 84 2.64e-16 72.8
MS.gene93416.t1 AT2G42830 48.529 68 35 0 9 76 17 84 2.92e-16 72.8
MS.gene93416.t1 AT4G37940 45.588 68 37 0 9 76 2 69 3.31e-16 71.2
MS.gene93416.t1 AT5G10140 47.826 69 35 1 9 76 2 70 3.34e-16 70.9
MS.gene93416.t1 AT3G58780 47.887 71 37 0 6 76 14 84 3.70e-16 72.4
MS.gene93416.t1 AT5G51860 49.254 67 34 0 10 76 3 69 3.77e-16 71.6
MS.gene93416.t1 AT3G57390 47.059 68 36 0 9 76 2 69 4.02e-16 72.0
MS.gene93416.t1 AT2G22540 47.059 68 36 0 9 76 2 69 4.36e-16 72.0
MS.gene93416.t1 AT2G22540 47.059 68 36 0 9 76 2 69 4.36e-16 72.0
MS.gene93416.t1 AT4G11880 45.833 72 38 1 10 80 3 74 4.38e-16 70.9
MS.gene93416.t1 AT4G11880 45.833 72 38 1 10 80 3 74 4.38e-16 70.9
MS.gene93416.t1 AT3G58780 47.887 71 37 0 6 76 20 90 4.57e-16 72.4
MS.gene93416.t1 AT5G51860 49.254 67 34 0 10 76 3 69 4.86e-16 71.2
MS.gene93416.t1 AT5G10140 47.826 69 35 1 9 76 2 70 4.90e-16 70.9
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 5.01e-16 71.2
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 5.01e-16 71.2
MS.gene93416.t1 AT5G10140 47.826 69 35 1 9 76 2 70 5.16e-16 70.9
MS.gene93416.t1 AT3G57230 44.118 68 38 0 9 76 2 69 5.31e-16 72.0
MS.gene93416.t1 AT3G57230 44.118 68 38 0 9 76 2 69 5.31e-16 72.0
MS.gene93416.t1 AT5G13790 48.529 68 35 0 9 76 2 69 5.40e-16 72.4
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 5.49e-16 71.2
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 5.49e-16 71.2
MS.gene93416.t1 AT5G62165 46.269 67 36 0 10 76 3 69 5.49e-16 71.2
MS.gene93416.t1 AT5G13790 48.529 68 35 0 9 76 2 69 5.50e-16 72.0
MS.gene93416.t1 AT5G10140 47.826 69 35 1 9 76 2 70 6.39e-16 70.9
MS.gene93416.t1 AT3G58780 47.887 71 37 0 6 76 14 84 6.85e-16 72.0
MS.gene93416.t1 AT3G30260 34.167 120 70 3 9 127 2 113 7.59e-16 71.6
MS.gene93416.t1 AT3G57390 47.059 68 36 0 9 76 2 69 7.94e-16 71.6
MS.gene93416.t1 AT4G11880 45.833 72 38 1 10 80 3 74 8.93e-16 70.9
MS.gene93416.t1 AT4G11880 45.833 72 38 1 10 80 3 74 8.93e-16 70.9
MS.gene93416.t1 AT3G54340 44.286 70 37 1 9 76 2 71 9.36e-16 70.9
MS.gene93416.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.18e-15 71.2
MS.gene93416.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.18e-15 71.2
MS.gene93416.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.18e-15 71.2
MS.gene93416.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.18e-15 71.2
MS.gene93416.t1 AT2G22630 44.118 68 38 0 9 76 2 69 1.41e-15 70.5
MS.gene93416.t1 AT2G22630 44.118 68 38 0 9 76 2 69 1.41e-15 70.5
MS.gene93416.t1 AT1G22130 34.286 105 68 1 9 112 2 106 1.80e-15 71.2
MS.gene93416.t1 AT5G60910 46.479 71 35 1 9 79 2 69 2.02e-15 70.5
MS.gene93416.t1 AT1G69120 38.889 90 52 1 9 98 2 88 2.17e-15 70.1
MS.gene93416.t1 AT1G17310 52.703 74 33 1 8 81 47 118 2.37e-15 69.7
MS.gene93416.t1 AT1G29962 40.541 74 44 0 5 78 4 77 2.43e-15 68.9
MS.gene93416.t1 AT1G77980 35.238 105 67 1 9 112 2 106 2.46e-15 70.9
MS.gene93416.t1 AT1G17310 50.633 79 37 1 8 86 58 134 2.93e-15 69.7
MS.gene93416.t1 AT1G26310 37.500 96 46 2 9 90 2 97 3.33e-15 70.1
MS.gene93416.t1 AT1G69120 38.889 90 52 1 9 98 2 88 3.88e-15 69.7
MS.gene93416.t1 AT5G20240 44.286 70 37 1 9 76 2 71 4.45e-15 67.8
MS.gene93416.t1 AT5G20240 44.286 70 37 1 9 76 2 71 7.17e-15 68.2
MS.gene93416.t1 AT5G15800 46.377 69 36 1 9 76 2 70 9.56e-15 68.6
MS.gene93416.t1 AT5G15800 46.377 69 36 1 9 76 2 70 1.76e-14 68.2
MS.gene93416.t1 AT2G14210 43.478 69 38 1 9 76 2 70 2.50e-14 67.4
MS.gene93416.t1 AT2G14210 43.478 69 38 1 9 76 2 70 3.12e-14 67.0
MS.gene93416.t1 AT5G65050 43.478 69 38 1 9 76 2 70 3.67e-14 65.9
MS.gene93416.t1 AT2G03710 44.286 70 37 2 9 76 2 71 3.99e-14 65.9
MS.gene93416.t1 AT3G02310 44.928 69 37 1 9 76 2 70 4.77e-14 65.9
MS.gene93416.t1 AT1G47760 31.405 121 67 3 9 129 2 106 8.79e-14 65.1
MS.gene93416.t1 AT3G58780 50.000 60 30 0 6 65 14 73 9.20e-14 65.9
MS.gene93416.t1 AT2G22540 51.786 56 27 0 9 64 2 57 9.91e-14 65.9
MS.gene93416.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.03e-13 64.7
MS.gene93416.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.03e-13 65.1
MS.gene93416.t1 AT3G58780 50.000 60 30 0 6 65 14 73 1.14e-13 65.9
MS.gene93416.t1 AT5G65050 43.478 69 38 1 9 76 2 70 1.18e-13 64.7
MS.gene93416.t1 AT2G03710 44.286 70 37 2 9 76 2 71 1.53e-13 65.5
MS.gene93416.t1 AT2G03710 44.286 70 37 2 9 76 2 71 1.59e-13 65.5
MS.gene93416.t1 AT5G65060 43.478 69 38 1 9 76 2 70 1.78e-13 64.3
MS.gene93416.t1 AT1G24260 39.175 97 56 1 9 105 2 95 1.91e-13 65.1
MS.gene93416.t1 AT1G24260 50.000 56 28 0 9 64 2 57 2.04e-13 65.1
MS.gene93416.t1 AT1G24260 39.175 97 56 1 9 105 2 95 2.17e-13 64.7
MS.gene93416.t1 AT5G65060 43.478 69 38 1 9 76 2 70 2.64e-13 63.5
MS.gene93416.t1 AT1G71692 41.429 70 40 1 9 77 2 71 2.95e-13 63.9
MS.gene93416.t1 AT5G65060 43.478 69 38 1 9 76 2 70 3.05e-13 63.9
MS.gene93416.t1 AT3G02310 44.928 69 37 1 9 76 2 70 3.61e-13 64.3
MS.gene93416.t1 AT5G65070 39.130 69 41 1 9 76 2 70 6.32e-13 62.0
MS.gene93416.t1 AT5G65070 39.130 69 41 1 9 76 2 70 1.25e-12 62.4
MS.gene93416.t1 AT1G28450 35.135 74 48 0 5 78 4 77 1.80e-12 61.6
MS.gene93416.t1 AT5G65070 39.130 69 41 1 9 76 2 70 2.60e-12 61.6
MS.gene93416.t1 AT5G65070 39.130 69 41 1 9 76 2 70 3.54e-12 61.2
MS.gene93416.t1 AT4G37435 37.500 72 44 1 9 79 2 73 6.01e-12 60.1
MS.gene93416.t1 AT5G65070 43.860 57 32 0 9 65 2 58 1.41e-11 59.7

Find 23 sgRNAs with CRISPR-Local

Find 30 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATGGTACCATTGTTT+TGG 0.337688 1.1:+76015277 None:intergenic
TCTTCTCGTTGTCCAGTAGT+TGG 0.420297 1.1:+76015193 None:intergenic
CGTAGTGGGCTCTTCAAGAA+AGG 0.499918 1.1:-76015429 MS.gene93416:CDS
TGGCCAACCCAATGTGGATA+CGG 0.509185 1.1:-76015331 MS.gene93416:CDS
TCTATGACCGTATCCACATT+GGG 0.514276 1.1:+76015324 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 1.1:+76015241 None:intergenic
GACTCAGATCAACCAACTAC+TGG 0.536514 1.1:-76015205 MS.gene93416:CDS
ATCTATGACCGTATCCACAT+TGG 0.545676 1.1:+76015323 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.1:-76015443 MS.gene93416:CDS
AGCGACATGTGCACCACAGA+TGG 0.558797 1.1:+76015392 None:intergenic
CTTCAACCATGTCGAGTGGA+AGG 0.562158 1.1:-76015530 None:intergenic
AATGAAAATACCTTCTCTCC+AGG 0.563686 1.1:+76015354 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.1:-76015444 MS.gene93416:CDS
AGTATTGAGCTCGCGCACGT+TGG 0.584782 1.1:+76015233 None:intergenic
TGACCGTATCCACATTGGGT+TGG 0.608969 1.1:+76015328 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.1:+76015430 None:intergenic
TTCATTTGGCCAACCCAATG+TGG 0.622502 1.1:-76015337 MS.gene93416:CDS
TGTGCTTCAACCATGTCGAG+TGG 0.638522 1.1:-76015534 None:intergenic
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1.1:-76015288 MS.gene93416:CDS
GTGAGTCTCAATGAATTGCA+TGG 0.640763 1.1:+76015263 None:intergenic
AGTGAGCTTTGTACCATCTG+TGG 0.652271 1.1:-76015405 MS.gene93416:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.1:-76015519 MS.gene93416:CDS
GGACAACGAGAAGAAACGTG+CGG 0.746947 1.1:-76015184 MS.gene93416:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.1:76015184-76015203 None:intergenic 20.0%
AATGAAAATACCTTCTCTCC+AGG + chr1.1:76015323-76015342 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.1:76015400-76015419 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.1:76015399-76015418 None:intergenic 35.0%
!!! GGAGAGAAGGTATTTTCATT+TGG - chr1.1:76015323-76015342 MS.gene93416:CDS 35.0%
ATCTATGACCGTATCCACAT+TGG + chr1.1:76015354-76015373 None:intergenic 40.0%
GTGAGTCTCAATGAATTGCA+TGG + chr1.1:76015414-76015433 None:intergenic 40.0%
TCTATGACCGTATCCACATT+GGG + chr1.1:76015353-76015372 None:intergenic 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.1:76015398-76015417 None:intergenic 40.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.1:76015247-76015266 None:intergenic 45.0%
GACTCAGATCAACCAACTAC+TGG - chr1.1:76015469-76015488 MS.gene93416:CDS 45.0%
TCTTCTCGTTGTCCAGTAGT+TGG + chr1.1:76015484-76015503 None:intergenic 45.0%
TTCATTTGGCCAACCCAATG+TGG - chr1.1:76015337-76015356 MS.gene93416:CDS 45.0%
! AGTGAGCTTTGTACCATCTG+TGG - chr1.1:76015269-76015288 MS.gene93416:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.1:76015175-76015194 None:intergenic 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG - chr1.1:76015310-76015329 MS.gene93416:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1.1:76015395-76015414 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1.1:76015394-76015413 None:intergenic 45.0%
GGACAACGAGAAGAAACGTG+CGG - chr1.1:76015490-76015509 MS.gene93416:CDS 50.0%
TGACCGTATCCACATTGGGT+TGG + chr1.1:76015349-76015368 None:intergenic 50.0%
TGGCCAACCCAATGTGGATA+CGG - chr1.1:76015343-76015362 MS.gene93416:CDS 50.0%
!! CGTAGTGGGCTCTTCAAGAA+AGG - chr1.1:76015245-76015264 MS.gene93416:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.1:76015302-76015321 MS.gene93416:CDS 50.0%
AGCGACATGTGCACCACAGA+TGG + chr1.1:76015285-76015304 None:intergenic 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1.1:76015386-76015405 MS.gene93416:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1.1:76015155-76015174 MS.gene93416:CDS 55.0%
! AGTATTGAGCTCGCGCACGT+TGG + chr1.1:76015444-76015463 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.1:76015230-76015249 MS.gene93416:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.1:76015231-76015250 MS.gene93416:CDS 55.0%
GCTCGCGCACGTTGGCGCTA+CGG + chr1.1:76015436-76015455 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 76015152 76015544 76015152 ID=MS.gene93416
chr1.1 mRNA 76015152 76015544 76015152 ID=MS.gene93416.t1;Parent=MS.gene93416
chr1.1 exon 76015152 76015544 76015152 ID=MS.gene93416.t1.exon1;Parent=MS.gene93416.t1
chr1.1 CDS 76015152 76015544 76015152 ID=cds.MS.gene93416.t1;Parent=MS.gene93416.t1
Gene Sequence

>MS.gene93416

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGGCAGTGAGCTTTGTACCATCTGTGGTGCACATGTCGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCAACCCAATGTGGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGACTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCAGTTGACTCAGATCAACCAACTACTGGACAACGAGAAGAAACGTGCGGAAGAGCTGAGACACTTGCGCAAAGCTACATAG
Protein sequence

>MS.gene93416.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKGSELCTICGAHVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIETHRSANVRELNTQLTQINQLLDNEKKRAEELRHLRKAT