AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93800

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93800.t1 MTR_8g043650 89.873 237 24 0 1 237 1 237 1.90e-159 441
MS.gene93800.t1 MTR_1g105910 90.717 237 22 0 1 237 1 237 1.58e-154 429
MS.gene93800.t1 MTR_1g105920 92.237 219 17 0 1 219 1 219 2.40e-152 423
MS.gene93800.t1 MTR_2g030740 91.561 237 20 0 1 237 1 237 8.39e-152 422
MS.gene93800.t1 MTR_3g052920 88.128 219 26 0 1 219 1 219 2.41e-145 405
MS.gene93800.t1 MTR_1g012570 88.608 237 27 0 1 237 1 237 3.41e-144 402
MS.gene93800.t1 MTR_1g105905 82.727 220 38 0 18 237 1 220 5.68e-135 379
MS.gene93800.t1 MTR_3g052870 81.279 219 22 1 1 219 1 200 1.02e-125 355
MS.gene93800.t1 MTR_5g055100 68.776 237 74 0 1 237 1 237 4.28e-122 347
MS.gene93800.t1 MTR_0121s0080 71.308 237 67 1 1 237 1 236 5.29e-120 341
MS.gene93800.t1 MTR_3g030770 73.617 235 44 3 1 225 1 227 6.48e-120 341
MS.gene93800.t1 MTR_1g077360 72.000 225 63 0 1 225 1 225 8.13e-120 341
MS.gene93800.t1 MTR_1g108510 74.043 235 43 3 1 225 1 227 1.13e-119 340
MS.gene93800.t1 MTR_2g085280 67.373 236 77 0 1 236 1 236 1.60e-118 337
MS.gene93800.t1 MTR_1g106070 89.011 182 20 0 1 182 1 182 2.02e-118 335
MS.gene93800.t1 MTR_2g085250 67.373 236 77 0 1 236 1 236 3.92e-118 337
MS.gene93800.t1 MTR_1g075600 71.556 225 64 0 1 225 1 225 1.61e-117 335
MS.gene93800.t1 MTR_2g093190 73.191 235 45 3 1 225 1 227 2.92e-117 334
MS.gene93800.t1 MTR_5g045560 70.464 237 70 0 1 237 1 237 8.93e-115 328
MS.gene93800.t1 MTR_1g108580 71.064 235 50 3 1 225 1 227 1.50e-113 325
MS.gene93800.t1 MTR_5g053390 69.333 225 69 0 1 225 1 225 4.86e-113 323
MS.gene93800.t1 MTR_7g062350 63.983 236 83 2 3 237 14 248 2.76e-101 294
MS.gene93800.t1 MTR_1g075570 64.607 178 49 1 18 195 1 164 1.05e-69 211
MS.gene93800.t1 MTR_0121s0100 78.906 128 27 0 1 128 1 128 2.92e-69 209
MS.gene93800.t1 MTR_3g030780 75.781 128 31 0 1 128 1 128 1.52e-64 197
MS.gene93800.t1 MTR_3g080940 55.422 166 74 0 7 172 7 172 2.56e-64 199
MS.gene93800.t1 MTR_3g067910 69.608 102 31 0 21 122 2 103 5.04e-47 151
MS.gene93800.t1 MTR_2g105290 39.766 171 93 2 5 172 8 171 2.08e-41 139
MS.gene93800.t1 MTR_8g086290 41.566 166 87 2 5 167 8 166 3.44e-41 139
MS.gene93800.t1 MTR_7g028448 44.516 155 74 3 5 159 8 150 4.11e-34 120
MS.gene93800.t1 MTR_4g036915 44.516 155 74 3 5 159 8 150 4.11e-34 120
MS.gene93800.t1 MTR_1g108500 64.948 97 13 1 22 118 110 185 9.31e-32 119
MS.gene93800.t1 MTR_4g127140 37.500 184 95 4 5 175 8 184 1.21e-31 115
MS.gene93800.t1 MTR_3g067875 82.143 56 10 0 18 73 1 56 3.67e-27 99.8
MS.gene93800.t1 MTR_3g067915 52.128 94 45 0 33 126 3 96 2.25e-25 95.9
MS.gene93800.t1 MTR_1g047550 62.319 69 26 0 9 77 2 70 1.37e-24 96.3
MS.gene93800.t1 MTR_8g079502 62.319 69 26 0 9 77 2 70 3.18e-24 95.5
MS.gene93800.t1 MTR_4g131030 40.517 116 54 2 9 109 2 117 1.34e-23 94.7
MS.gene93800.t1 MTR_1g054265 46.535 101 52 1 9 109 2 100 1.37e-23 93.6
MS.gene93800.t1 MTR_1g063160 48.544 103 51 2 9 109 2 104 1.54e-23 93.6
MS.gene93800.t1 MTR_8g051580 46.535 101 52 1 9 109 2 100 1.69e-23 93.6
MS.gene93800.t1 MTR_3g067870 68.254 63 20 0 16 78 83 145 2.68e-23 92.4
MS.gene93800.t1 MTR_8g046350 37.013 154 79 4 9 162 2 137 2.03e-22 90.1
MS.gene93800.t1 MTR_4g094632 40.708 113 64 2 9 120 2 112 1.38e-20 85.5
MS.gene93800.t1 MTR_4g093970 33.939 165 86 3 10 153 29 191 9.67e-20 85.1
MS.gene93800.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 4.31e-19 82.8
MS.gene93800.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 6.13e-19 83.2
MS.gene93800.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 1.59e-18 80.5
MS.gene93800.t1 MTR_1g053070 49.383 81 41 0 9 89 2 82 2.85e-18 81.3
MS.gene93800.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 2.85e-18 80.5
MS.gene93800.t1 MTR_8g033270 33.929 168 95 5 9 167 2 162 1.77e-17 79.3
MS.gene93800.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.84e-17 78.6
MS.gene93800.t1 MTR_8g022970 33.544 158 92 3 8 159 17 167 2.06e-17 77.8
MS.gene93800.t1 MTR_2g017865 41.346 104 60 1 9 112 17 119 2.82e-17 79.0
MS.gene93800.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 3.05e-17 78.6
MS.gene93800.t1 MTR_3g102570 42.308 104 57 3 9 111 2 103 5.59e-17 79.0
MS.gene93800.t1 MTR_7g075870 33.333 168 96 5 10 166 3 165 5.89e-17 77.0
MS.gene93800.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 1.39e-16 75.5
MS.gene93800.t1 MTR_5g032520 48.529 68 35 0 9 76 2 69 1.40e-16 76.3
MS.gene93800.t1 MTR_5g032150 48.529 68 35 0 9 76 2 69 1.45e-16 76.3
MS.gene93800.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 1.52e-16 76.6
MS.gene93800.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.56e-16 76.3
MS.gene93800.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 1.63e-16 75.9
MS.gene93800.t1 MTR_8g033220 27.354 223 134 7 10 220 3 209 1.67e-16 76.3
MS.gene93800.t1 MTR_3g437790 34.266 143 77 4 26 159 30 164 3.53e-16 74.3
MS.gene93800.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 4.13e-16 75.9
MS.gene93800.t1 MTR_0003s0590 42.683 82 47 0 9 90 2 83 6.19e-16 75.1
MS.gene93800.t1 MTR_3g109930 32.857 140 78 3 27 159 20 150 8.26e-16 73.2
MS.gene93800.t1 MTR_7g075870 33.136 169 96 6 10 166 3 166 1.02e-15 73.6
MS.gene93800.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.37e-15 73.9
MS.gene93800.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.47e-15 73.9
MS.gene93800.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 1.51e-15 75.1
MS.gene93800.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.62e-15 69.3
MS.gene93800.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.71e-15 73.6
MS.gene93800.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.77e-15 73.2
MS.gene93800.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 1.96e-15 73.6
MS.gene93800.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 3.53e-15 72.0
MS.gene93800.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 5.80e-15 69.3
MS.gene93800.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 6.11e-15 72.0
MS.gene93800.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 6.39e-15 72.0
MS.gene93800.t1 MTR_4g109810 29.167 240 137 12 9 230 2 226 8.48e-15 71.6
MS.gene93800.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 2.85e-14 70.5
MS.gene93800.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 3.20e-14 70.1
MS.gene93800.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 3.21e-14 68.9
MS.gene93800.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 3.82e-14 65.5
MS.gene93800.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 5.75e-14 68.2
MS.gene93800.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 5.76e-14 69.3
MS.gene93800.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 7.17e-14 68.9
MS.gene93800.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 7.89e-14 68.9
MS.gene93800.t1 MTR_3g113030 28.814 177 98 5 9 181 2 154 1.50e-13 68.2
MS.gene93800.t1 MTR_4g051538 30.198 202 112 6 5 198 5 185 1.44e-12 65.5
MS.gene93800.t1 MTR_2g045020 31.902 163 83 7 7 159 21 165 1.93e-12 64.3
MS.gene93800.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 3.17e-12 63.2
MS.gene93800.t1 MTR_4g108720 28.977 176 103 9 9 172 2 167 7.90e-12 64.3
MS.gene93800.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.82e-11 60.8
MS.gene93800.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.93e-11 60.8
MS.gene93800.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 2.96e-11 60.8
MS.gene93800.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 3.36e-11 61.2
MS.gene93800.t1 MTR_1g041615 36.190 105 58 2 20 123 17 113 9.09e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93800.t1 AT5G60440 55.914 186 75 3 5 187 3 184 1.41e-63 200
MS.gene93800.t1 AT2G24840 50.000 164 71 4 6 163 60 218 1.77e-45 153
MS.gene93800.t1 AT1G65360 40.088 227 121 6 5 225 3 220 1.23e-42 144
MS.gene93800.t1 AT1G01530 43.229 192 97 4 4 192 2 184 3.97e-42 144
MS.gene93800.t1 AT4G36590 46.951 164 77 4 5 160 3 164 1.26e-39 137
MS.gene93800.t1 AT2G34440 45.299 117 55 2 9 121 2 113 7.98e-27 102
MS.gene93800.t1 AT3G04100 32.716 162 105 3 2 159 7 168 7.08e-26 100
MS.gene93800.t1 AT3G66656 43.697 119 63 1 9 123 2 120 1.27e-25 99.0
MS.gene93800.t1 AT1G72350 36.184 152 64 4 9 160 43 161 6.26e-23 93.2
MS.gene93800.t1 AT1G28460 30.178 169 114 2 5 169 4 172 3.70e-21 87.4
MS.gene93800.t1 AT1G29962 29.651 172 114 4 5 169 4 175 1.21e-19 83.6
MS.gene93800.t1 AT4G22950 49.351 77 39 0 10 86 3 79 1.99e-19 82.8
MS.gene93800.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.38e-19 83.6
MS.gene93800.t1 AT4G09960 46.512 86 45 1 9 93 2 87 2.85e-19 83.6
MS.gene93800.t1 AT4G09960 46.512 86 45 1 9 93 3 88 2.93e-19 83.6
MS.gene93800.t1 AT4G09960 46.512 86 45 1 9 93 12 97 3.94e-19 83.6
MS.gene93800.t1 AT4G22950 40.909 110 62 1 10 119 3 109 4.69e-19 82.8
MS.gene93800.t1 AT4G22950 40.909 110 62 1 10 119 3 109 4.69e-19 82.8
MS.gene93800.t1 AT4G09960 46.512 86 45 1 9 93 28 113 5.63e-19 83.6
MS.gene93800.t1 AT2G45660 33.333 162 92 5 10 162 3 157 6.61e-19 80.9
MS.gene93800.t1 AT4G18960 31.489 235 141 9 5 226 15 242 6.89e-19 83.2
MS.gene93800.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.37e-18 82.4
MS.gene93800.t1 AT4G09960 46.512 86 45 1 9 93 97 182 1.44e-18 83.6
MS.gene93800.t1 AT2G45660 52.941 68 32 0 10 77 3 70 3.27e-18 80.5
MS.gene93800.t1 AT2G22540 39.130 138 64 5 9 132 2 133 1.42e-17 79.3
MS.gene93800.t1 AT2G22540 39.130 138 64 5 9 132 2 133 1.42e-17 79.3
MS.gene93800.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.18e-17 77.0
MS.gene93800.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.36e-17 76.3
MS.gene93800.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.76e-17 78.2
MS.gene93800.t1 AT1G28450 28.571 161 109 3 5 159 4 164 3.89e-17 77.0
MS.gene93800.t1 AT2G42830 47.368 76 40 0 1 76 9 84 3.92e-17 78.2
MS.gene93800.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.09e-17 77.4
MS.gene93800.t1 AT3G58780 50.704 71 35 0 6 76 20 90 4.64e-17 78.2
MS.gene93800.t1 AT3G58780 50.704 71 35 0 6 76 14 84 4.70e-17 78.2
MS.gene93800.t1 AT3G61120 51.471 68 33 0 9 76 2 69 6.19e-17 77.8
MS.gene93800.t1 AT5G51870 50.000 72 36 0 5 76 21 92 7.34e-17 76.3
MS.gene93800.t1 AT1G17310 36.905 168 65 5 8 170 47 178 7.39e-17 77.0
MS.gene93800.t1 AT4G24540 51.471 68 33 0 9 76 2 69 7.95e-17 77.0
MS.gene93800.t1 AT5G51870 53.731 67 31 0 10 76 3 69 7.98e-17 77.0
MS.gene93800.t1 AT3G58780 50.704 71 35 0 6 76 14 84 8.75e-17 77.8
MS.gene93800.t1 AT1G17310 36.905 168 65 5 8 170 58 189 9.30e-17 77.0
MS.gene93800.t1 AT5G51870 53.731 67 31 0 10 76 13 79 9.84e-17 76.6
MS.gene93800.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.14e-16 76.6
MS.gene93800.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.22e-16 75.1
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.39e-16 73.2
MS.gene93800.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.53e-16 75.9
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.63e-16 74.7
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.63e-16 74.7
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.63e-16 74.7
MS.gene93800.t1 AT1G22130 37.143 105 65 1 9 112 2 106 1.63e-16 77.8
MS.gene93800.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.65e-16 76.3
MS.gene93800.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.74e-16 75.1
MS.gene93800.t1 AT5G13790 43.011 93 44 1 9 101 2 85 1.87e-16 76.6
MS.gene93800.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.89e-16 75.1
MS.gene93800.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.01e-16 76.3
MS.gene93800.t1 AT3G57230 47.059 68 36 0 9 76 2 69 2.01e-16 76.3
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.03e-16 74.3
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.03e-16 74.3
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.03e-16 74.3
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.03e-16 74.3
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 2.03e-16 74.3
MS.gene93800.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.12e-16 75.1
MS.gene93800.t1 AT1G77980 38.095 105 64 1 9 112 2 106 2.19e-16 77.4
MS.gene93800.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.35e-16 74.7
MS.gene93800.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.48e-16 76.3
MS.gene93800.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.78e-16 75.9
MS.gene93800.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.11e-16 73.9
MS.gene93800.t1 AT4G11880 48.611 72 36 1 10 80 3 74 4.11e-16 73.9
MS.gene93800.t1 AT5G51860 52.239 67 32 0 10 76 3 69 4.52e-16 74.3
MS.gene93800.t1 AT1G69120 43.373 83 44 1 9 91 2 81 4.71e-16 75.1
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.76e-16 73.9
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.76e-16 73.9
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.95e-16 73.9
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.95e-16 73.9
MS.gene93800.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.95e-16 73.9
MS.gene93800.t1 AT5G51860 52.239 67 32 0 10 76 3 69 7.08e-16 73.9
MS.gene93800.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
MS.gene93800.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
MS.gene93800.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
MS.gene93800.t1 AT1G77950 46.053 76 39 2 9 83 2 76 7.66e-16 74.7
MS.gene93800.t1 AT5G60910 49.296 71 33 1 9 79 2 69 7.74e-16 74.7
MS.gene93800.t1 AT2G22630 47.059 68 36 0 9 76 2 69 7.85e-16 74.3
MS.gene93800.t1 AT2G22630 47.059 68 36 0 9 76 2 69 7.85e-16 74.3
MS.gene93800.t1 AT4G11880 48.611 72 36 1 10 80 3 74 8.73e-16 73.9
MS.gene93800.t1 AT4G11880 48.611 72 36 1 10 80 3 74 8.73e-16 73.9
MS.gene93800.t1 AT1G24260 30.962 239 133 10 9 234 2 221 9.93e-16 74.3
MS.gene93800.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.04e-15 74.3
MS.gene93800.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.31e-15 74.3
MS.gene93800.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.70e-15 73.9
MS.gene93800.t1 AT3G54340 47.143 70 35 1 9 76 2 71 1.82e-15 73.6
MS.gene93800.t1 AT5G15800 49.275 69 34 1 9 76 2 70 3.09e-15 73.2
MS.gene93800.t1 AT1G24260 30.000 250 135 10 9 234 2 235 3.25e-15 73.2
MS.gene93800.t1 AT5G15800 49.275 69 34 1 9 76 2 70 4.96e-15 72.8
MS.gene93800.t1 AT5G20240 47.143 70 35 1 9 76 2 71 5.08e-15 70.5
MS.gene93800.t1 AT2G14210 46.377 69 36 1 9 76 2 70 5.25e-15 72.0
MS.gene93800.t1 AT2G22540 38.406 138 60 6 9 132 2 128 5.32e-15 72.0
MS.gene93800.t1 AT5G20240 47.143 70 35 1 9 76 2 71 7.16e-15 71.2
MS.gene93800.t1 AT2G14210 46.377 69 36 1 9 76 2 70 7.28e-15 71.6
MS.gene93800.t1 AT5G65050 46.377 69 36 1 9 76 2 70 1.60e-14 69.7
MS.gene93800.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.64e-14 71.2
MS.gene93800.t1 AT1G24260 29.762 252 132 11 9 234 2 234 1.73e-14 70.9
MS.gene93800.t1 AT5G23260 43.299 97 47 3 2 90 9 105 1.75e-14 71.2
MS.gene93800.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.99e-14 70.1
MS.gene93800.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.10e-14 70.5
MS.gene93800.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.61e-14 69.3
MS.gene93800.t1 AT3G58780 52.459 61 29 0 6 66 14 74 2.76e-14 70.9
MS.gene93800.t1 AT5G23260 44.318 88 43 2 9 90 2 89 3.04e-14 70.1
MS.gene93800.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.16e-14 68.9
MS.gene93800.t1 AT5G23260 44.318 88 43 2 9 90 2 89 3.17e-14 70.5
MS.gene93800.t1 AT5G65050 46.377 69 36 1 9 76 2 70 3.22e-14 69.3
MS.gene93800.t1 AT2G03710 53.571 56 26 0 9 64 2 57 4.65e-14 68.6
MS.gene93800.t1 AT5G65060 46.377 69 36 1 9 76 2 70 4.85e-14 68.6
MS.gene93800.t1 AT3G02310 47.826 69 35 1 9 76 2 70 5.09e-14 69.7
MS.gene93800.t1 AT5G65060 46.377 69 36 1 9 76 2 70 5.12e-14 68.6
MS.gene93800.t1 AT5G65060 46.377 69 36 1 9 76 2 70 6.04e-14 68.6
MS.gene93800.t1 AT1G47760 34.483 116 61 3 9 123 2 103 7.26e-14 68.2
MS.gene93800.t1 AT2G03710 45.714 70 36 1 9 76 2 71 1.05e-13 68.9
MS.gene93800.t1 AT2G03710 45.714 70 36 1 9 76 2 71 1.08e-13 68.9
MS.gene93800.t1 AT1G71692 44.286 70 38 1 9 77 2 71 2.34e-13 67.4
MS.gene93800.t1 AT5G65070 42.029 69 39 1 9 76 2 70 2.58e-13 65.9
MS.gene93800.t1 AT5G65070 42.029 69 39 1 9 76 2 70 5.40e-13 65.9
MS.gene93800.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.02e-12 65.5
MS.gene93800.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.09e-12 65.9
MS.gene93800.t1 AT1G18750 26.570 207 130 7 9 195 2 206 1.72e-12 66.6
MS.gene93800.t1 AT1G18750 26.570 207 130 7 9 195 2 206 1.74e-12 66.2
MS.gene93800.t1 AT1G18750 38.667 75 44 1 9 81 2 76 5.50e-12 65.1
MS.gene93800.t1 AT5G65070 47.368 57 30 0 9 65 2 58 5.88e-12 63.5
MS.gene93800.t1 AT2G03060 28.070 171 106 7 9 164 2 170 7.15e-12 64.7
MS.gene93800.t1 AT2G03060 28.070 171 106 7 9 164 2 170 7.15e-12 64.7
MS.gene93800.t1 AT2G03060 28.070 171 106 7 9 164 2 170 7.15e-12 64.7
MS.gene93800.t1 AT2G03060 28.070 171 106 7 9 164 2 170 7.95e-12 64.7
MS.gene93800.t1 AT1G46408 36.134 119 67 4 10 119 5 123 1.18e-11 63.2
MS.gene93800.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.23e-11 63.9
MS.gene93800.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.55e-11 63.5
MS.gene93800.t1 AT5G65080 42.667 75 40 2 5 76 3 77 2.71e-11 61.2
MS.gene93800.t1 AT4G37435 40.278 72 42 1 9 79 2 73 3.00e-11 60.8
MS.gene93800.t1 AT2G26320 40.000 70 40 1 9 76 18 87 4.62e-11 58.5
MS.gene93800.t1 AT5G65080 43.548 62 35 0 1 62 1 62 6.98e-11 60.1
MS.gene93800.t1 AT5G27130 40.000 85 47 2 2 82 6 90 7.73e-11 61.2

Find 61 sgRNAs with CRISPR-Local

Find 79 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 1.2:-78702882 MS.gene93800:CDS
CTTGTGGAGGATTTGGTTGA+TGG 0.298622 1.2:+78702954 None:intergenic
ATCTGAGCTTGTGGAGGATT+TGG 0.314155 1.2:+78702947 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.316276 1.2:-78703133 MS.gene93800:CDS
AGGTGACCGAAACTCAATTT+TGG 0.318694 1.2:-78703153 MS.gene93800:CDS
ATTGCATGGTACCATTGTTT+TGG 0.328016 1.2:+78703290 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.345119 1.2:-78702881 MS.gene93800:CDS
TGAATTATTCAAGAAGGCTT+TGG 0.346261 1.2:-78703092 MS.gene93800:CDS
TGCTGATAGGCTTGTAATCC+AGG 0.383576 1.2:-78703041 MS.gene93800:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.384083 1.2:-78702896 MS.gene93800:CDS
TTGTTGCTCATCATGCTGAT+AGG 0.403840 1.2:-78703054 MS.gene93800:CDS
TCTTCTCGATGTCCAGTAGT+TGG 0.408924 1.2:+78703206 None:intergenic
GTCCCGTTGATGGGATGAAT+AGG 0.432754 1.2:-78703123 MS.gene93800:CDS
TCTATGACCGTATCAACATT+GGG 0.442152 1.2:+78703337 None:intergenic
CTTCTTGAATAATTCAAGTT+GGG 0.442228 1.2:+78703099 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1.2:-78703132 MS.gene93800:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 1.2:-78703122 MS.gene93800:CDS
AGCCCACCAAAATTGAGTTT+CGG 0.472023 1.2:+78703147 None:intergenic
CCTTCTTGAATAATTCAAGT+TGG 0.480564 1.2:+78703098 None:intergenic
GCCCTATTCATCCCATCAAC+GGG 0.481029 1.2:+78703121 None:intergenic
GTGGAGGATTTGGTTGATGG+TGG 0.481407 1.2:+78702957 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.496587 1.2:+78702899 None:intergenic
CCAACTTGAATTATTCAAGA+AGG 0.499244 1.2:-78703098 MS.gene93800:CDS
AGTATTGAGCTCGCGCACAT+TGG 0.504609 1.2:+78703246 None:intergenic
ATCTATGACCGTATCAACAT+TGG 0.506195 1.2:+78703336 None:intergenic
ACAGAGGGTGCAAAGCTCAC+TGG 0.525840 1.2:+78703420 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.527904 1.2:+78702900 None:intergenic
GGGATCGGATCAAAAGAATC+CGG 0.534400 1.2:+78702835 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 1.2:+78703120 None:intergenic
GACTCAGATCAACCAACTAC+TGG 0.537057 1.2:-78703218 MS.gene93800:CDS
TGGCCACCCCAATGTTGATA+CGG 0.542985 1.2:-78703344 MS.gene93800:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.2:-78703456 MS.gene93800:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 1.2:-78702880 MS.gene93800:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1.2:+78702887 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 1.2:-78702854 MS.gene93800:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.562158 1.2:-78703543 None:intergenic
AACGAAAATACCTTCTCCCC+AGG 0.564049 1.2:+78703367 None:intergenic
GCTGGAAACATCTGAGCTTG+TGG 0.568464 1.2:+78702938 None:intergenic
GGATTTGGTTGATGGTGGAG+AGG 0.568530 1.2:+78702962 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.2:-78703457 MS.gene93800:CDS
AGTGAGCTTTGCACCCTCTG+TGG 0.587031 1.2:-78703418 MS.gene93800:CDS
ATGGTGGAGAGGCATGTTCG+AGG 0.589348 1.2:+78702973 None:intergenic
AGAGCTGAGCGACTTGCGCA+AGG 0.590514 1.2:-78703173 MS.gene93800:CDS
AGCAACATCTGCACCACAGA+GGG 0.595144 1.2:+78703405 None:intergenic
TGCGCTTCAACCATGTCGAG+TGG 0.601726 1.2:-78703547 None:intergenic
TGGTTTGAGTAGGAGCACCC+TGG 0.605264 1.2:+78703023 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 1.2:-78702879 MS.gene93800:CDS
CGAGTCCCGCCCCAAAACAA+TGG 0.608244 1.2:-78703301 MS.gene93800:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.2:+78703443 None:intergenic
GCTGATAGGCTTGTAATCCA+GGG 0.636302 1.2:-78703040 MS.gene93800:CDS
TGGTGGAGAGGCATGTTCGA+GGG 0.636955 1.2:+78702974 None:intergenic
TTTGGTTTCAACAATATGGG+GGG 0.638238 1.2:-78702878 MS.gene93800:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1.2:-78703281 MS.gene93800:CDS
GGAAACATCTGAGCTTGTGG+AGG 0.645017 1.2:+78702941 None:intergenic
ATCGGATCAAAAGAATCCGG+AGG 0.662576 1.2:+78702838 None:intergenic
TGACCGTATCAACATTGGGG+TGG 0.665619 1.2:+78703341 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.678771 1.2:+78702839 None:intergenic
ATGAGCCTCAATGAATTGCA+TGG 0.679678 1.2:+78703276 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.2:-78703532 MS.gene93800:CDS
CTATGACCGTATCAACATTG+GGG 0.709949 1.2:+78703338 None:intergenic
GAGCAACATCTGCACCACAG+AGG 0.729838 1.2:+78703404 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.2:78702876-78702895 None:intergenic 20.0%
!! CTTCTTGAATAATTCAAGTT+GGG + chr1.2:78703283-78703302 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr1.2:78703498-78703517 MS.gene93800:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr1.2:78703497-78703516 MS.gene93800:CDS 25.0%
!!! ATTCAGTTTTTTGTTGGAAA+CGG - chr1.2:78703378-78703397 MS.gene93800:CDS 25.0%
AAAAACTGAATGGTTTGAGT+AGG + chr1.2:78703369-78703388 None:intergenic 30.0%
CCAACTTGAATTATTCAAGA+AGG - chr1.2:78703281-78703300 MS.gene93800:CDS 30.0%
CCTTCTTGAATAATTCAAGT+TGG + chr1.2:78703284-78703303 None:intergenic 30.0%
GTTTCCAACAAAAAACTGAA+TGG + chr1.2:78703379-78703398 None:intergenic 30.0%
TGAATTATTCAAGAAGGCTT+TGG - chr1.2:78703287-78703306 MS.gene93800:CDS 30.0%
TTGTTGAAACCAAACAAATG+AGG + chr1.2:78703495-78703514 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG - chr1.2:78703499-78703518 MS.gene93800:CDS 30.0%
!!! CAAACCATTCAGTTTTTTGT+TGG - chr1.2:78703372-78703391 MS.gene93800:CDS 30.0%
AACAAATGAGGTTGCAACAT+AGG + chr1.2:78703483-78703502 None:intergenic 35.0%
ACAAATGAGGTTGCAACATA+GGG + chr1.2:78703482-78703501 None:intergenic 35.0%
ATCTATGACCGTATCAACAT+TGG + chr1.2:78703046-78703065 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG - chr1.2:78703483-78703502 MS.gene93800:CDS 35.0%
TCTATGACCGTATCAACATT+GGG + chr1.2:78703045-78703064 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.2:78703092-78703111 None:intergenic 35.0%
! GTTTGGTTTCAACAATATGG+GGG - chr1.2:78703500-78703519 MS.gene93800:CDS 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.2:78703091-78703110 None:intergenic 35.0%
! TTTGGTTTCAACAATATGGG+GGG - chr1.2:78703501-78703520 MS.gene93800:CDS 35.0%
AGCCCACCAAAATTGAGTTT+CGG + chr1.2:78703235-78703254 None:intergenic 40.0%
ATGAGCCTCAATGAATTGCA+TGG + chr1.2:78703106-78703125 None:intergenic 40.0%
CTATGACCGTATCAACATTG+GGG + chr1.2:78703044-78703063 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1.2:78703098-78703117 MS.gene93800:CDS 40.0%
TTGTTGCTCATCATGCTGAT+AGG - chr1.2:78703325-78703344 MS.gene93800:CDS 40.0%
! AGGTGACCGAAACTCAATTT+TGG - chr1.2:78703226-78703245 MS.gene93800:CDS 40.0%
! TGACCGAAACTCAATTTTGG+TGG - chr1.2:78703229-78703248 MS.gene93800:CDS 40.0%
!! GACCGAAACTCAATTTTGGT+GGG - chr1.2:78703230-78703249 MS.gene93800:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.2:78703090-78703109 None:intergenic 40.0%
AACGAAAATACCTTCTCCCC+AGG + chr1.2:78703015-78703034 None:intergenic 45.0%
ATCTGAGCTTGTGGAGGATT+TGG + chr1.2:78703435-78703454 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.2:78702939-78702958 None:intergenic 45.0%
GACTCAGATCAACCAACTAC+TGG - chr1.2:78703161-78703180 MS.gene93800:CDS 45.0%
GCTGATAGGCTTGTAATCCA+GGG - chr1.2:78703339-78703358 MS.gene93800:CDS 45.0%
TCTTCTCGATGTCCAGTAGT+TGG + chr1.2:78703176-78703195 None:intergenic 45.0%
TGCTGATAGGCTTGTAATCC+AGG - chr1.2:78703338-78703357 MS.gene93800:CDS 45.0%
! CTTGTGGAGGATTTGGTTGA+TGG + chr1.2:78703428-78703447 None:intergenic 45.0%
! TCCCGTTGATGGGATGAATA+GGG - chr1.2:78703257-78703276 MS.gene93800:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.2:78702867-78702886 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1.2:78702995-78703014 MS.gene93800:CDS 45.0%
!! GAAACTCAATTTTGGTGGGC+TGG - chr1.2:78703234-78703253 MS.gene93800:CDS 45.0%
!! GGGTTCTGAAAAAACTGTGC+TGG + chr1.2:78703462-78703481 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1.2:78702996-78703015 MS.gene93800:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+CGG + chr1.2:78703087-78703106 None:intergenic 45.0%
!!! GGGGAGAAGGTATTTTCGTT+TGG - chr1.2:78703015-78703034 MS.gene93800:CDS 45.0%
AGCAACATCTGCACCACAGA+GGG + chr1.2:78702977-78702996 None:intergenic 50.0%
GCCCTATTCATCCCATCAAC+GGG + chr1.2:78703261-78703280 None:intergenic 50.0%
GCTGGAAACATCTGAGCTTG+TGG + chr1.2:78703444-78703463 None:intergenic 50.0%
GGAAACATCTGAGCTTGTGG+AGG + chr1.2:78703441-78703460 None:intergenic 50.0%
GGCCCTATTCATCCCATCAA+CGG + chr1.2:78703262-78703281 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG - chr1.2:78703504-78703523 MS.gene93800:CDS 50.0%
TGACCGTATCAACATTGGGG+TGG + chr1.2:78703041-78703060 None:intergenic 50.0%
TGGCCACCCCAATGTTGATA+CGG - chr1.2:78703035-78703054 MS.gene93800:CDS 50.0%
TTCAACAATATGGGGGGAGG+AGG - chr1.2:78703507-78703526 MS.gene93800:CDS 50.0%
! AGTATTGAGCTCGCGCACAT+TGG + chr1.2:78703136-78703155 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - chr1.2:78703256-78703275 MS.gene93800:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1.2:78703002-78703021 MS.gene93800:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.2:78702994-78703013 MS.gene93800:CDS 50.0%
!! GGATTTGGTTGATGGTGGAG+AGG + chr1.2:78703420-78703439 None:intergenic 50.0%
!! GTGGAGGATTTGGTTGATGG+TGG + chr1.2:78703425-78703444 None:intergenic 50.0%
!!! TGGTACCATTGTTTTGGGGC+GGG + chr1.2:78703086-78703105 None:intergenic 50.0%
AACAATATGGGGGGAGGAGG+TGG - chr1.2:78703510-78703529 MS.gene93800:CDS 55.0%
AGTGAGCTTTGCACCCTCTG+TGG - chr1.2:78702961-78702980 MS.gene93800:CDS 55.0%
GAGCAACATCTGCACCACAG+AGG + chr1.2:78702978-78702997 None:intergenic 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1.2:78702847-78702866 MS.gene93800:CDS 55.0%
! ACAGAGGGTGCAAAGCTCAC+TGG + chr1.2:78702962-78702981 None:intergenic 55.0%
! ATGGTGGAGAGGCATGTTCG+AGG + chr1.2:78703409-78703428 None:intergenic 55.0%
! TGGTGGAGAGGCATGTTCGA+GGG + chr1.2:78703408-78703427 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.2:78702922-78702941 MS.gene93800:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.2:78702923-78702942 MS.gene93800:CDS 55.0%
!! TGGTTTGAGTAGGAGCACCC+TGG + chr1.2:78703359-78703378 None:intergenic 55.0%
AGAGCTGAGCGACTTGCGCA+AGG - chr1.2:78703206-78703225 MS.gene93800:CDS 60.0%
ATGGGGGGAGGAGGTGGATA+TGG - chr1.2:78703516-78703535 MS.gene93800:CDS 60.0%
CGAGTCCCGCCCCAAAACAA+TGG - chr1.2:78703078-78703097 MS.gene93800:CDS 60.0%
GGAGGTGGATATGGACCCTC+CGG - chr1.2:78703525-78703544 MS.gene93800:CDS 60.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - chr1.2:78703247-78703266 MS.gene93800:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - chr1.2:78703246-78703265 MS.gene93800:CDS 65.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 78702844 78703557 78702844 ID=MS.gene93800
chr1.2 mRNA 78702844 78703557 78702844 ID=MS.gene93800.t1;Parent=MS.gene93800
chr1.2 exon 78702844 78703557 78702844 ID=MS.gene93800.t1.exon1;Parent=MS.gene93800.t1
chr1.2 CDS 78702844 78703557 78702844 ID=cds.MS.gene93800.t1;Parent=MS.gene93800.t1
Gene Sequence

>MS.gene93800

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGACAAACGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACCCTCTGTGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCGTTTGGCCACCCCAATGTTGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCGCCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCATCGCAGCGCCAATGTGCGCGAGCTCAATACTCAGCTGACTCAGATCAACCAACTACTGGACATCGAGAAGAAACGTGCTGAAGAGCTGAGCGACTTGCGCAAGGTGACCGAAACTCAATTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTATTCAAGAAGGCTTTGGATGAGCTTAAGAAACTTGTTGCTCATCATGCTGATAGGCTTGTAATCCAGGGTGCTCCTACTCAAACCATTCAGTTTTTTGTTGGAAACGGTTCACCCTCGAACATGCCTCTCCACCATCAACCAAATCCTCCACAAGCTCAGATGTTTCCAGCACAGTTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene93800.t1

MSSGRKSRGRQKIEMKKMTNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGHPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINQLLDIEKKRAEELSDLRKVTETQFWWAGPVDGMNRAQLELFKKALDELKKLVAHHADRLVIQGAPTQTIQFFVGNGSPSNMPLHHQPNPPQAQMFPAQFFQNPMLQPHLFGFNNMGGGGGYGPSGFF