AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93802

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93802.t1 MTR_8g043650 92.405 237 18 0 1 237 1 237 8.41e-164 452
MS.gene93802.t1 MTR_1g105910 95.982 224 9 0 1 224 1 224 7.31e-162 447
MS.gene93802.t1 MTR_1g105920 91.324 219 19 0 1 219 1 219 5.18e-151 420
MS.gene93802.t1 MTR_2g030740 88.186 237 28 0 1 237 1 237 4.16e-148 412
MS.gene93802.t1 MTR_1g012570 89.451 237 25 0 1 237 1 237 2.30e-146 408
MS.gene93802.t1 MTR_3g052920 84.932 219 33 0 1 219 1 219 6.82e-141 394
MS.gene93802.t1 MTR_1g105905 85.000 220 33 0 18 237 1 220 8.25e-139 388
MS.gene93802.t1 MTR_3g052870 79.909 219 25 1 1 219 1 200 2.22e-123 349
MS.gene93802.t1 MTR_0121s0080 71.730 237 66 1 1 237 1 236 2.63e-121 345
MS.gene93802.t1 MTR_3g030770 73.077 234 45 3 1 224 1 226 1.08e-117 335
MS.gene93802.t1 MTR_1g106070 87.363 182 23 0 1 182 1 182 3.65e-117 332
MS.gene93802.t1 MTR_1g108510 73.077 234 45 3 1 224 1 226 9.53e-117 333
MS.gene93802.t1 MTR_5g055100 65.823 237 81 0 1 237 1 237 3.68e-115 329
MS.gene93802.t1 MTR_2g093190 72.650 234 46 3 1 224 1 226 8.41e-115 328
MS.gene93802.t1 MTR_1g077360 68.889 225 70 0 1 225 1 225 4.23e-114 326
MS.gene93802.t1 MTR_2g085280 65.678 236 81 0 1 236 1 236 3.42e-113 324
MS.gene93802.t1 MTR_2g085250 65.678 236 81 0 1 236 1 236 6.25e-113 323
MS.gene93802.t1 MTR_1g075600 69.196 224 69 0 1 224 1 224 1.93e-112 322
MS.gene93802.t1 MTR_1g108580 74.537 216 47 1 1 216 1 208 6.26e-112 320
MS.gene93802.t1 MTR_5g053390 68.304 224 71 0 1 224 1 224 5.62e-111 318
MS.gene93802.t1 MTR_5g045560 68.354 237 75 0 1 237 1 237 2.75e-110 317
MS.gene93802.t1 MTR_7g062350 65.471 223 75 2 16 237 27 248 5.13e-99 288
MS.gene93802.t1 MTR_1g075570 63.483 178 51 1 18 195 1 164 3.19e-70 213
MS.gene93802.t1 MTR_0121s0100 79.688 128 26 0 1 128 1 128 3.76e-69 209
MS.gene93802.t1 MTR_3g030780 75.194 129 32 0 1 129 1 129 1.55e-64 197
MS.gene93802.t1 MTR_3g080940 52.778 180 84 1 7 186 7 185 1.57e-64 199
MS.gene93802.t1 MTR_3g067910 67.647 102 33 0 21 122 2 103 2.50e-45 147
MS.gene93802.t1 MTR_2g105290 40.351 171 92 2 5 172 8 171 4.72e-41 139
MS.gene93802.t1 MTR_8g086290 42.169 166 86 2 5 167 8 166 1.26e-40 137
MS.gene93802.t1 MTR_7g028448 45.161 155 73 3 5 159 8 150 5.62e-35 123
MS.gene93802.t1 MTR_4g036915 45.161 155 73 3 5 159 8 150 5.62e-35 123
MS.gene93802.t1 MTR_4g127140 39.227 181 90 4 5 172 8 181 9.73e-32 115
MS.gene93802.t1 MTR_1g108500 58.407 113 24 2 8 118 94 185 4.70e-31 117
MS.gene93802.t1 MTR_3g067875 85.714 56 8 0 18 73 1 56 2.73e-28 102
MS.gene93802.t1 MTR_3g067870 71.429 63 18 0 16 78 83 145 2.71e-24 95.1
MS.gene93802.t1 MTR_3g067915 64.179 67 24 0 60 126 30 96 1.37e-23 91.3
MS.gene93802.t1 MTR_1g047550 60.870 69 27 0 9 77 2 70 1.93e-23 93.6
MS.gene93802.t1 MTR_8g079502 60.870 69 27 0 9 77 2 70 4.80e-23 92.4
MS.gene93802.t1 MTR_4g131030 40.517 116 54 3 9 109 2 117 1.81e-22 91.7
MS.gene93802.t1 MTR_8g051580 38.971 136 69 2 9 132 2 135 2.46e-22 90.5
MS.gene93802.t1 MTR_1g054265 45.545 101 53 1 9 109 2 100 2.75e-22 90.1
MS.gene93802.t1 MTR_1g063160 47.573 103 52 2 9 109 2 104 3.12e-22 90.1
MS.gene93802.t1 MTR_8g046350 40.171 117 63 2 9 125 2 111 3.85e-21 87.0
MS.gene93802.t1 MTR_4g094632 41.509 106 60 1 9 114 2 105 5.90e-20 83.6
MS.gene93802.t1 MTR_4g093970 33.526 173 88 4 10 161 29 195 2.42e-19 84.0
MS.gene93802.t1 MTR_1g053070 36.667 150 80 3 9 157 2 137 4.33e-19 83.6
MS.gene93802.t1 MTR_3g005530 52.941 68 32 0 9 76 2 69 6.25e-19 82.4
MS.gene93802.t1 MTR_3g452380 42.453 106 51 1 3 108 11 106 1.18e-18 82.4
MS.gene93802.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 4.61e-18 79.3
MS.gene93802.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 4.78e-18 79.7
MS.gene93802.t1 MTR_5g032150 29.439 214 126 6 9 201 2 211 7.84e-18 79.7
MS.gene93802.t1 MTR_5g032520 35.556 135 71 4 9 131 2 132 1.03e-17 79.3
MS.gene93802.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 1.48e-17 79.0
MS.gene93802.t1 MTR_2g017865 30.270 185 100 4 9 167 17 198 2.21e-17 79.0
MS.gene93802.t1 MTR_8g033270 51.471 68 33 0 9 76 2 69 3.36e-17 78.6
MS.gene93802.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 5.34e-17 77.8
MS.gene93802.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 7.50e-17 76.3
MS.gene93802.t1 MTR_6g464720 49.275 69 34 1 9 76 2 70 8.50e-17 77.4
MS.gene93802.t1 MTR_3g102570 32.164 171 92 5 9 162 2 165 1.12e-16 77.8
MS.gene93802.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 1.34e-16 76.3
MS.gene93802.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 2.40e-16 75.5
MS.gene93802.t1 MTR_8g033220 47.436 78 41 0 10 87 3 80 2.59e-16 75.5
MS.gene93802.t1 MTR_7g075870 38.182 110 66 1 10 119 3 110 3.29e-16 75.1
MS.gene93802.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 3.34e-16 76.3
MS.gene93802.t1 MTR_8g022970 33.333 159 91 4 8 159 17 167 4.04e-16 74.3
MS.gene93802.t1 MTR_7g016630 27.778 216 136 7 9 207 2 214 4.91e-16 75.5
MS.gene93802.t1 MTR_4g084740 47.368 76 38 2 9 83 2 76 5.24e-16 76.3
MS.gene93802.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 7.35e-16 74.7
MS.gene93802.t1 MTR_5g021270 40.187 107 56 3 9 113 2 102 8.06e-16 74.3
MS.gene93802.t1 MTR_5g021270 40.187 107 56 3 9 113 2 102 8.61e-16 74.3
MS.gene93802.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 1.18e-15 74.3
MS.gene93802.t1 MTR_8g066260 40.964 83 46 1 9 91 2 81 1.38e-15 73.9
MS.gene93802.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.39e-15 73.9
MS.gene93802.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 1.94e-15 68.9
MS.gene93802.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.48e-15 73.2
MS.gene93802.t1 MTR_3g437790 33.566 143 78 4 26 159 30 164 2.49e-15 72.0
MS.gene93802.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 2.51e-15 72.8
MS.gene93802.t1 MTR_5g046790 45.070 71 36 1 9 79 2 69 2.68e-15 72.4
MS.gene93802.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 5.45e-15 69.3
MS.gene93802.t1 MTR_7g075870 37.838 111 66 2 10 119 3 111 6.99e-15 71.2
MS.gene93802.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 2.07e-14 69.3
MS.gene93802.t1 MTR_4g109810 28.455 246 143 12 9 236 2 232 2.80e-14 70.1
MS.gene93802.t1 MTR_3g109930 30.714 140 81 3 27 159 20 150 3.10e-14 68.9
MS.gene93802.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 3.20e-14 70.1
MS.gene93802.t1 MTR_1g029670 46.970 66 34 1 9 74 2 66 3.82e-14 68.6
MS.gene93802.t1 MTR_7g075850 45.714 70 36 1 9 76 2 71 5.76e-14 69.3
MS.gene93802.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 6.57e-14 64.7
MS.gene93802.t1 MTR_3g084980 55.357 56 25 0 9 64 2 57 6.79e-14 69.3
MS.gene93802.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 8.50e-14 68.9
MS.gene93802.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 1.66e-13 67.8
MS.gene93802.t1 MTR_4g051538 33.125 160 91 5 5 162 5 150 4.14e-13 67.0
MS.gene93802.t1 MTR_4g093030 41.892 74 43 0 9 82 2 75 1.12e-12 64.3
MS.gene93802.t1 MTR_4g108720 26.738 187 115 7 9 183 2 178 7.82e-12 64.3
MS.gene93802.t1 MTR_4g036050 28.931 159 100 5 9 157 2 157 1.01e-11 62.4
MS.gene93802.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.25e-11 61.6
MS.gene93802.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.48e-11 61.6
MS.gene93802.t1 MTR_4g036050 40.000 70 41 1 9 77 2 71 1.55e-11 62.0
MS.gene93802.t1 MTR_2g045020 31.875 160 81 7 7 156 21 162 7.37e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93802.t1 AT5G60440 54.255 188 79 3 5 189 3 186 2.84e-61 194
MS.gene93802.t1 AT2G24840 49.693 163 71 4 6 162 60 217 7.78e-44 149
MS.gene93802.t1 AT1G01530 41.038 212 98 5 4 192 2 209 2.70e-40 139
MS.gene93802.t1 AT1G65360 38.222 225 124 6 5 223 3 218 2.06e-39 136
MS.gene93802.t1 AT4G36590 45.732 164 79 4 5 160 3 164 1.68e-38 134
MS.gene93802.t1 AT2G34440 44.444 117 56 2 9 121 2 113 3.32e-26 100
MS.gene93802.t1 AT3G66656 41.985 131 71 2 9 134 2 132 1.48e-25 99.0
MS.gene93802.t1 AT3G04100 31.579 152 100 2 2 149 7 158 1.54e-24 97.1
MS.gene93802.t1 AT1G72350 35.374 147 62 3 9 155 43 156 9.42e-23 92.8
MS.gene93802.t1 AT1G28460 30.636 173 110 3 5 174 4 169 4.77e-20 84.7
MS.gene93802.t1 AT4G22950 49.351 77 39 0 10 86 3 79 3.18e-19 82.0
MS.gene93802.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.91e-19 83.2
MS.gene93802.t1 AT4G09960 46.512 86 45 1 9 93 3 88 4.72e-19 83.2
MS.gene93802.t1 AT4G09960 46.512 86 45 1 9 93 2 87 4.78e-19 83.2
MS.gene93802.t1 AT4G09960 46.512 86 45 1 9 93 12 97 6.38e-19 82.8
MS.gene93802.t1 AT4G18960 30.579 242 134 8 5 226 15 242 7.11e-19 83.2
MS.gene93802.t1 AT4G09960 46.512 86 45 1 9 93 28 113 9.11e-19 82.8
MS.gene93802.t1 AT1G29962 29.651 172 114 4 5 169 4 175 1.05e-18 81.3
MS.gene93802.t1 AT2G45650 52.941 68 32 0 9 76 2 69 1.15e-18 82.4
MS.gene93802.t1 AT2G45660 52.941 68 32 0 10 77 3 70 1.27e-18 80.1
MS.gene93802.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.36e-18 81.6
MS.gene93802.t1 AT4G22950 50.000 76 38 0 10 85 3 78 1.36e-18 81.6
MS.gene93802.t1 AT4G09960 46.512 86 45 1 9 93 97 182 3.10e-18 82.4
MS.gene93802.t1 AT2G45660 52.941 68 32 0 10 77 3 70 3.27e-18 80.5
MS.gene93802.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.86e-17 79.0
MS.gene93802.t1 AT2G22540 51.471 68 33 0 9 76 2 69 1.86e-17 79.0
MS.gene93802.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.78e-17 77.0
MS.gene93802.t1 AT5G51870 53.731 67 31 0 10 76 3 69 2.91e-17 77.8
MS.gene93802.t1 AT3G57230 47.059 68 36 0 9 76 2 69 4.22e-17 75.9
MS.gene93802.t1 AT4G24540 36.486 148 77 5 9 156 2 132 4.35e-17 77.4
MS.gene93802.t1 AT2G42830 47.368 76 40 0 1 76 9 84 5.15e-17 77.8
MS.gene93802.t1 AT5G51870 50.000 72 36 0 5 76 21 92 5.79e-17 76.6
MS.gene93802.t1 AT2G42830 47.368 76 40 0 1 76 9 84 5.94e-17 77.8
MS.gene93802.t1 AT3G58780 50.704 71 35 0 6 76 14 84 6.78e-17 77.4
MS.gene93802.t1 AT3G58780 50.704 71 35 0 6 76 20 90 6.83e-17 77.8
MS.gene93802.t1 AT5G51870 53.731 67 31 0 10 76 3 69 7.20e-17 77.0
MS.gene93802.t1 AT3G61120 51.471 68 33 0 9 76 2 69 7.98e-17 77.4
MS.gene93802.t1 AT5G51870 53.731 67 31 0 10 76 13 79 8.45e-17 77.0
MS.gene93802.t1 AT3G57390 50.000 68 34 0 9 76 2 69 8.60e-17 77.0
MS.gene93802.t1 AT5G10140 50.725 69 33 1 9 76 2 70 9.13e-17 75.5
MS.gene93802.t1 AT4G37940 48.529 68 35 0 9 76 2 69 9.44e-17 76.6
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.01e-16 73.6
MS.gene93802.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.06e-16 76.6
MS.gene93802.t1 AT4G37940 48.529 68 35 0 9 76 2 69 1.12e-16 75.5
MS.gene93802.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.16e-16 77.0
MS.gene93802.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.16e-16 77.0
MS.gene93802.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.16e-16 77.0
MS.gene93802.t1 AT1G77950 47.368 76 38 2 9 83 2 76 1.16e-16 77.0
MS.gene93802.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.27e-16 75.5
MS.gene93802.t1 AT3G58780 50.704 71 35 0 6 76 14 84 1.31e-16 77.4
MS.gene93802.t1 AT1G77980 42.045 88 50 1 9 95 2 89 1.43e-16 77.8
MS.gene93802.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.51e-16 75.5
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.52e-16 74.7
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.52e-16 74.7
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.52e-16 74.7
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.52e-16 74.7
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.52e-16 74.7
MS.gene93802.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.56e-16 76.6
MS.gene93802.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.56e-16 76.6
MS.gene93802.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.71e-16 75.1
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.71e-16 74.3
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.71e-16 74.3
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 1.71e-16 74.3
MS.gene93802.t1 AT1G22130 38.710 93 56 1 9 100 2 94 1.73e-16 77.8
MS.gene93802.t1 AT5G13790 43.011 93 44 1 9 101 2 85 2.09e-16 76.6
MS.gene93802.t1 AT3G57390 50.000 68 34 0 9 76 2 69 2.14e-16 76.3
MS.gene93802.t1 AT5G13790 51.471 68 33 0 9 76 2 69 2.61e-16 76.3
MS.gene93802.t1 AT3G54340 30.128 156 85 3 9 162 2 135 2.81e-16 75.5
MS.gene93802.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.67e-16 74.3
MS.gene93802.t1 AT4G11880 48.611 72 36 1 10 80 3 74 3.67e-16 74.3
MS.gene93802.t1 AT2G22630 47.059 68 36 0 9 76 2 69 3.85e-16 75.1
MS.gene93802.t1 AT2G22630 47.059 68 36 0 9 76 2 69 3.85e-16 75.1
MS.gene93802.t1 AT1G69120 40.659 91 51 1 9 99 2 89 4.13e-16 75.1
MS.gene93802.t1 AT5G51860 52.239 67 32 0 10 76 3 69 5.39e-16 74.3
MS.gene93802.t1 AT5G51860 52.239 67 32 0 10 76 3 69 6.32e-16 74.3
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.69e-16 73.9
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 6.69e-16 73.9
MS.gene93802.t1 AT5G60910 49.296 71 33 1 9 79 2 69 6.92e-16 74.7
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.70e-16 73.9
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.70e-16 73.9
MS.gene93802.t1 AT5G62165 49.254 67 34 0 10 76 3 69 7.70e-16 73.9
MS.gene93802.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.19e-16 73.9
MS.gene93802.t1 AT4G11880 48.611 72 36 1 10 80 3 74 9.19e-16 73.9
MS.gene93802.t1 AT1G69120 40.659 91 51 1 9 99 2 89 1.01e-15 74.3
MS.gene93802.t1 AT1G28450 29.371 143 95 3 5 141 4 146 1.01e-15 73.2
MS.gene93802.t1 AT1G26310 47.826 69 35 1 9 76 2 70 1.05e-15 74.3
MS.gene93802.t1 AT3G30260 46.377 69 36 1 9 76 2 70 1.23e-15 74.3
MS.gene93802.t1 AT5G23260 44.330 97 46 3 2 90 9 105 2.14e-15 73.6
MS.gene93802.t1 AT5G23260 44.330 97 46 3 2 90 9 105 2.26e-15 73.6
MS.gene93802.t1 AT5G20240 47.143 70 35 1 9 76 2 71 2.70e-15 71.2
MS.gene93802.t1 AT5G15800 49.275 69 34 1 9 76 2 70 2.97e-15 73.2
MS.gene93802.t1 AT5G23260 45.455 88 42 2 9 90 2 89 3.87e-15 72.8
MS.gene93802.t1 AT5G23260 45.455 88 42 2 9 90 2 89 4.24e-15 72.8
MS.gene93802.t1 AT2G22540 50.000 68 29 1 9 76 2 64 4.67e-15 72.4
MS.gene93802.t1 AT5G15800 49.275 69 34 1 9 76 2 70 4.71e-15 72.8
MS.gene93802.t1 AT5G20240 47.143 70 35 1 9 76 2 71 5.33e-15 71.6
MS.gene93802.t1 AT1G17310 51.899 79 36 1 8 86 47 123 6.50e-15 71.6
MS.gene93802.t1 AT2G14210 46.377 69 36 1 9 76 2 70 7.78e-15 71.6
MS.gene93802.t1 AT1G17310 51.899 79 36 1 8 86 58 134 8.28e-15 71.6
MS.gene93802.t1 AT2G14210 46.377 69 36 1 9 76 2 70 1.01e-14 71.2
MS.gene93802.t1 AT5G65050 28.646 192 120 9 9 193 2 183 1.18e-14 70.1
MS.gene93802.t1 AT1G24260 27.848 237 143 7 9 234 2 221 1.69e-14 70.9
MS.gene93802.t1 AT3G58780 53.333 60 28 0 6 65 14 73 1.73e-14 70.9
MS.gene93802.t1 AT3G02310 47.826 69 35 1 9 76 2 70 2.01e-14 70.1
MS.gene93802.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.07e-14 69.3
MS.gene93802.t1 AT3G58780 53.333 60 28 0 6 65 14 73 2.38e-14 70.9
MS.gene93802.t1 AT5G65050 30.653 199 104 8 9 193 2 180 2.91e-14 68.9
MS.gene93802.t1 AT1G24260 27.092 251 141 8 9 234 2 235 2.98e-14 70.5
MS.gene93802.t1 AT2G03710 47.143 70 35 2 9 76 2 71 3.91e-14 68.9
MS.gene93802.t1 AT5G65050 46.377 69 36 1 9 76 2 70 4.02e-14 68.9
MS.gene93802.t1 AT3G02310 47.826 69 35 1 9 76 2 70 4.70e-14 69.7
MS.gene93802.t1 AT5G65060 46.377 69 36 1 9 76 2 70 7.51e-14 68.2
MS.gene93802.t1 AT2G03710 47.143 70 35 2 9 76 2 71 7.54e-14 69.3
MS.gene93802.t1 AT2G03710 47.143 70 35 2 9 76 2 71 7.78e-14 69.3
MS.gene93802.t1 AT5G65060 46.377 69 36 1 9 76 2 70 7.86e-14 68.2
MS.gene93802.t1 AT1G24260 53.571 56 26 0 9 64 2 57 9.26e-14 68.9
MS.gene93802.t1 AT5G65060 46.377 69 36 1 9 76 2 70 9.44e-14 68.2
MS.gene93802.t1 AT1G71692 44.286 70 38 1 9 77 2 71 1.32e-13 67.8
MS.gene93802.t1 AT1G47760 34.127 126 66 4 9 131 2 113 1.56e-13 67.0
MS.gene93802.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.24e-13 65.5
MS.gene93802.t1 AT5G65070 42.029 69 39 1 9 76 2 70 6.29e-13 65.9
MS.gene93802.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.06e-12 65.5
MS.gene93802.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.15e-12 66.6
MS.gene93802.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.19e-12 65.5
MS.gene93802.t1 AT1G69540 33.636 110 65 3 9 117 2 104 1.43e-12 66.6
MS.gene93802.t1 AT5G65070 47.368 57 30 0 9 65 2 58 5.43e-12 63.9
MS.gene93802.t1 AT1G18750 25.806 186 119 6 9 177 2 185 1.28e-11 63.9
MS.gene93802.t1 AT1G18750 25.806 186 119 6 9 177 2 185 1.43e-11 63.9
MS.gene93802.t1 AT4G37435 40.278 72 42 1 9 79 2 73 1.69e-11 61.6
MS.gene93802.t1 AT1G18750 37.333 75 45 1 9 81 2 76 3.95e-11 62.4
MS.gene93802.t1 AT2G26320 40.000 70 40 1 9 76 18 87 4.30e-11 58.5
MS.gene93802.t1 AT5G65080 42.029 69 39 1 9 76 9 77 5.40e-11 60.5
MS.gene93802.t1 AT2G03060 39.286 84 48 3 9 90 2 84 5.68e-11 62.0
MS.gene93802.t1 AT2G03060 39.286 84 48 3 9 90 2 84 5.89e-11 62.0
MS.gene93802.t1 AT2G03060 39.286 84 48 3 9 90 2 84 5.89e-11 62.0
MS.gene93802.t1 AT2G03060 39.286 84 48 3 9 90 2 84 5.89e-11 62.0
MS.gene93802.t1 AT5G65080 43.548 62 35 0 1 62 1 62 8.09e-11 60.1

Find 54 sgRNAs with CRISPR-Local

Find 80 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 1.2:+78677507 None:intergenic
TGGTGGGCTGGTCCCGTTGA+TGG 0.303436 1.2:-78677693 MS.gene93802:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1.2:+78677850 None:intergenic
TCTTCTCCATGTCCAGTAGA+TGG 0.353330 1.2:+78677766 None:intergenic
TGCTGATAGGCTGGTAATCC+AGG 0.373385 1.2:-78677601 MS.gene93802:CDS
ATGTTGCAACCTCACTTGTT+TGG 0.376512 1.2:-78677456 MS.gene93802:CDS
GAGGAGACTAAGAAACTTGT+TGG 0.386198 1.2:-78677630 MS.gene93802:CDS
GGGCTCAGATCAAAAGAATC+TGG 0.407516 1.2:+78677395 None:intergenic
CTTGTTTGGCTTCAACAATA+CGG 0.429938 1.2:-78677442 MS.gene93802:CDS
GTCCCGTTGATGGGATGAAT+AGG 0.432754 1.2:-78677683 MS.gene93802:CDS
GCGGAGGATTTGGTTGATGA+TGG 0.439291 1.2:+78677517 None:intergenic
GGTGGGCTGGTCCCGTTGAT+GGG 0.452333 1.2:-78677692 MS.gene93802:CDS
TCCCGTTGATGGGATGAATA+GGG 0.453040 1.2:-78677682 MS.gene93802:CDS
AGGCGACCGAGAGTCAGTTT+TGG 0.458130 1.2:-78677713 MS.gene93802:CDS
TTGTTTGGCTTCAACAATAC+GGG 0.463078 1.2:-78677441 MS.gene93802:CDS
GCCCTATTCATCCCATCAAC+GGG 0.481029 1.2:+78677681 None:intergenic
TTGTTGGACATCATGCTGAT+AGG 0.486314 1.2:-78677614 MS.gene93802:CDS
TGTATTGAGCTCGCGCACAT+TGG 0.491764 1.2:+78677806 None:intergenic
GTTGGAAACATTTGAGTTTG+CGG 0.508183 1.2:+78677498 None:intergenic
GTCTATGACCGTATCAACAT+TGG 0.509296 1.2:+78677896 None:intergenic
GCAGAGAGTGCAAAGCTCAC+TGG 0.516982 1.2:+78677980 None:intergenic
GGCCCTATTCATCCCATCAA+CGG 0.536262 1.2:+78677680 None:intergenic
GACTCAGATCAACCATCTAC+TGG 0.537057 1.2:-78677778 MS.gene93802:CDS
AACAAGTGAGGTTGCAACAT+AGG 0.539918 1.2:+78677459 None:intergenic
TCTATGACCGTATCAACATT+GGG 0.542196 1.2:+78677897 None:intergenic
TGGCCAACCCAATGTTGATA+CGG 0.545005 1.2:-78677904 MS.gene93802:CDS
GCTCGCGCACATTGGCGCTA+CGG 0.552531 1.2:+78677814 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.2:-78678016 MS.gene93802:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.555433 1.2:-78678103 None:intergenic
GTGGGACTCGAGAGAGATAA+CGG 0.555728 1.2:+78677874 None:intergenic
AGCCCACCAAAACTGACTCT+CGG 0.565176 1.2:+78677707 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.2:-78678017 MS.gene93802:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1.2:+78677927 None:intergenic
TGGACATCATGCTGATAGGC+TGG 0.588189 1.2:-78677610 MS.gene93802:CDS
AGAGCTGAGCAACTTGCGCA+AGG 0.589828 1.2:-78677733 MS.gene93802:CDS
TGACCGTATCAACATTGGGT+TGG 0.600758 1.2:+78677901 None:intergenic
AGGTTTGAGTAGGAGCACCC+TGG 0.605264 1.2:+78677583 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.2:+78678003 None:intergenic
GGATTTGGTTGATGATGGAG+AGG 0.611456 1.2:+78677522 None:intergenic
GCTGATAGGCTGGTAATCCA+GGG 0.614439 1.2:-78677600 MS.gene93802:CDS
TGTTTGGCTTCAACAATACG+GGG 0.616084 1.2:-78677440 MS.gene93802:CDS
AGTGAGCTTTGCACTCTCTG+CGG 0.622154 1.2:-78677978 MS.gene93802:CDS
GATCAACCATCTACTGGACA+TGG 0.624290 1.2:-78677772 MS.gene93802:CDS
TGAGCTTCAACCATGTCGAG+TGG 0.629588 1.2:-78678107 None:intergenic
CTCAGATCAAAAGAATCTGG+AGG 0.633945 1.2:+78677398 None:intergenic
TGGTACCATGCAATTCATTG+AGG 0.638950 1.2:-78677841 MS.gene93802:CDS
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1.2:-78677861 MS.gene93802:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 1.2:+78677836 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 1.2:+78677501 None:intergenic
TTGTTGAAGCCAAACAAGTG+AGG 0.651690 1.2:+78677447 None:intergenic
TCAGATCAAAAGAATCTGGA+GGG 0.666536 1.2:+78677399 None:intergenic
TTTGGCTTCAACAATACGGG+GGG 0.687957 1.2:-78677438 MS.gene93802:CDS
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.2:-78678092 MS.gene93802:CDS
GTTTGGCTTCAACAATACGG+GGG 0.701007 1.2:-78677439 MS.gene93802:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG + chr1.2:78677843-78677862 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.2:78677436-78677455 None:intergenic 20.0%
! AAAAATTGAAAGGTTTGAGT+AGG + chr1.2:78677929-78677948 None:intergenic 25.0%
! ATTTCCACCAAAAAATTGAA+AGG + chr1.2:78677939-78677958 None:intergenic 25.0%
!!! ACTCAAACCTTTCAATTTTT+TGG - chr1.2:78677929-78677948 MS.gene93802:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1.2:78677841-78677860 MS.gene93802:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1.2:78677844-78677863 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG - chr1.2:78677847-78677866 MS.gene93802:CDS 25.0%
!!! TTTCAATTTTTTGGTGGAAA+TGG - chr1.2:78677938-78677957 MS.gene93802:CDS 25.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG - chr1.2:78677850-78677869 MS.gene93802:CDS 30.0%
!!! CAAACCTTTCAATTTTTTGG+TGG - chr1.2:78677932-78677951 MS.gene93802:CDS 30.0%
TCTATGACCGTATCAACATT+GGG + chr1.2:78677605-78677624 None:intergenic 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.2:78677652-78677671 None:intergenic 35.0%
! CTTGTTTGGCTTCAACAATA+CGG - chr1.2:78678057-78678076 MS.gene93802:CDS 35.0%
! GGATTCTGAAAAAACTGTGT+TGG + chr1.2:78678022-78678041 None:intergenic 35.0%
! GTTGGAAACATTTGAGTTTG+CGG + chr1.2:78678004-78678023 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.2:78677651-78677670 None:intergenic 35.0%
! TTGTTTGGCTTCAACAATAC+GGG - chr1.2:78678058-78678077 MS.gene93802:CDS 35.0%
AACAAGTGAGGTTGCAACAT+AGG + chr1.2:78678043-78678062 None:intergenic 40.0%
AATGAAAATACCTTCTCCCC+AGG + chr1.2:78677575-78677594 None:intergenic 40.0%
ATGTTGCAACCTCACTTGTT+TGG - chr1.2:78678043-78678062 MS.gene93802:CDS 40.0%
GAGGAGACTAAGAAACTTGT+TGG - chr1.2:78677869-78677888 MS.gene93802:CDS 40.0%
GTCTATGACCGTATCAACAT+TGG + chr1.2:78677606-78677625 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1.2:78677658-78677677 MS.gene93802:CDS 40.0%
TTGTTGAAGCCAAACAAGTG+AGG + chr1.2:78678055-78678074 None:intergenic 40.0%
TTGTTGGACATCATGCTGAT+AGG - chr1.2:78677885-78677904 MS.gene93802:CDS 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + chr1.2:78677995-78678014 None:intergenic 40.0%
! TGTTTGGCTTCAACAATACG+GGG - chr1.2:78678059-78678078 MS.gene93802:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.2:78677650-78677669 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - chr1.2:78677575-78677594 MS.gene93802:CDS 40.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.2:78677499-78677518 None:intergenic 45.0%
GACTCAGATCAACCATCTAC+TGG - chr1.2:78677721-78677740 MS.gene93802:CDS 45.0%
GATCAACCATCTACTGGACA+TGG - chr1.2:78677727-78677746 MS.gene93802:CDS 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr1.2:78677666-78677685 None:intergenic 45.0%
TCTTCTCCATGTCCAGTAGA+TGG + chr1.2:78677736-78677755 None:intergenic 45.0%
TGACCGTATCAACATTGGGT+TGG + chr1.2:78677601-78677620 None:intergenic 45.0%
TGGCCAACCCAATGTTGATA+CGG - chr1.2:78677595-78677614 MS.gene93802:CDS 45.0%
! GGAAACATTTGAGTTTGCGG+AGG + chr1.2:78678001-78678020 None:intergenic 45.0%
! GTTTGGCTTCAACAATACGG+GGG - chr1.2:78678060-78678079 MS.gene93802:CDS 45.0%
! TCCCGTTGATGGGATGAATA+GGG - chr1.2:78677817-78677836 MS.gene93802:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.2:78677427-78677446 None:intergenic 45.0%
! TTTGGCTTCAACAATACGGG+GGG - chr1.2:78678061-78678080 MS.gene93802:CDS 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1.2:78677555-78677574 MS.gene93802:CDS 45.0%
!! GGATTTGGTTGATGATGGAG+AGG + chr1.2:78677980-78677999 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1.2:78677556-78677575 MS.gene93802:CDS 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1.2:78677647-78677666 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1.2:78677646-78677665 None:intergenic 45.0%
AGTGAGCTTTGCACTCTCTG+CGG - chr1.2:78677521-78677540 MS.gene93802:CDS 50.0%
GCCCTATTCATCCCATCAAC+GGG + chr1.2:78677821-78677840 None:intergenic 50.0%
GCTGATAGGCTGGTAATCCA+GGG - chr1.2:78677899-78677918 MS.gene93802:CDS 50.0%
GGCCCTATTCATCCCATCAA+CGG + chr1.2:78677822-78677841 None:intergenic 50.0%
GTGGGACTCGAGAGAGATAA+CGG + chr1.2:78677628-78677647 None:intergenic 50.0%
TGCTGATAGGCTGGTAATCC+AGG - chr1.2:78677898-78677917 MS.gene93802:CDS 50.0%
TGGACATCATGCTGATAGGC+TGG - chr1.2:78677889-78677908 MS.gene93802:CDS 50.0%
TGTATTGAGCTCGCGCACAT+TGG + chr1.2:78677696-78677715 None:intergenic 50.0%
! AGCCCACCAAAACTGACTCT+CGG + chr1.2:78677795-78677814 None:intergenic 50.0%
! GTCCCGTTGATGGGATGAAT+AGG - chr1.2:78677816-78677835 MS.gene93802:CDS 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1.2:78677562-78677581 MS.gene93802:CDS 50.0%
!! GACCGAGAGTCAGTTTTGGT+GGG - chr1.2:78677790-78677809 MS.gene93802:CDS 50.0%
!! GCGGAGGATTTGGTTGATGA+TGG + chr1.2:78677985-78678004 None:intergenic 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.2:78677554-78677573 MS.gene93802:CDS 50.0%
AGAGCTGAGCAACTTGCGCA+AGG - chr1.2:78677766-78677785 MS.gene93802:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1.2:78677638-78677657 MS.gene93802:CDS 55.0%
CTTCAACAATACGGGGGGAG+GGG - chr1.2:78678066-78678085 MS.gene93802:CDS 55.0%
GCTTCAACAATACGGGGGGA+GGG - chr1.2:78678065-78678084 MS.gene93802:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1.2:78677407-78677426 MS.gene93802:CDS 55.0%
TTCAACAATACGGGGGGAGG+GGG - chr1.2:78678067-78678086 MS.gene93802:CDS 55.0%
! AGGCGACCGAGAGTCAGTTT+TGG - chr1.2:78677786-78677805 MS.gene93802:CDS 55.0%
! GCAGAGAGTGCAAAGCTCAC+TGG + chr1.2:78677522-78677541 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.2:78677482-78677501 MS.gene93802:CDS 55.0%
!! AGGTTTGAGTAGGAGCACCC+TGG + chr1.2:78677919-78677938 None:intergenic 55.0%
!! CGACCGAGAGTCAGTTTTGG+TGG - chr1.2:78677789-78677808 MS.gene93802:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.2:78677483-78677502 MS.gene93802:CDS 55.0%
!! GAGAGTCAGTTTTGGTGGGC+TGG - chr1.2:78677794-78677813 MS.gene93802:CDS 55.0%
GGCTTCAACAATACGGGGGG+AGG - chr1.2:78678064-78678083 MS.gene93802:CDS 60.0%
AACAATACGGGGGGAGGGGG+TGG - chr1.2:78678070-78678089 MS.gene93802:CDS 65.0%
GCTCGCGCACATTGGCGCTA+CGG + chr1.2:78677688-78677707 None:intergenic 65.0%
!! GGTGGGCTGGTCCCGTTGAT+GGG - chr1.2:78677807-78677826 MS.gene93802:CDS 65.0%
!! TGGTGGGCTGGTCCCGTTGA+TGG - chr1.2:78677806-78677825 MS.gene93802:CDS 65.0%
ACGGGGGGAGGGGGTGGATA+TGG - chr1.2:78678076-78678095 MS.gene93802:CDS 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 78677404 78678117 78677404 ID=MS.gene93802
chr1.2 mRNA 78677404 78678117 78677404 ID=MS.gene93802.t1;Parent=MS.gene93802
chr1.2 exon 78677404 78678117 78677404 ID=MS.gene93802.t1.exon1;Parent=MS.gene93802.t1
chr1.2 CDS 78677404 78678117 78677404 ID=cds.MS.gene93802.t1;Parent=MS.gene93802.t1
Gene Sequence

>MS.gene93802

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGCGGTGCAGATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATACGGTCATAGACCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGCGCCAATGTGCGCGAGCTCAATACACAGCTGACTCAGATCAACCATCTACTGGACATGGAGAAGAAACGTGCTGAAGAGCTGAGCAACTTGCGCAAGGCGACCGAGAGTCAGTTTTGGTGGGCTGGTCCCGTTGATGGGATGAATAGGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGACTAAGAAACTTGTTGGACATCATGCTGATAGGCTGGTAATCCAGGGTGCTCCTACTCAAACCTTTCAATTTTTTGGTGGAAATGGTTCATCTTCTAACATGCCTCTCCATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAACACAGTTTTTTCAGAATCCTATGTTGCAACCTCACTTGTTTGGCTTCAACAATACGGGGGGAGGGGGTGGATATGGACCCTCCAGATTCTTTTGA
Protein sequence

>MS.gene93802.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGADVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIEAHRSANVRELNTQLTQINHLLDMEKKRAEELSNLRKATESQFWWAGPVDGMNRAQLEFFKKALEETKKLVGHHADRLVIQGAPTQTFQFFGGNGSSSNMPLHHQPNPPQTQMFPTQFFQNPMLQPHLFGFNNTGGGGGYGPSRFF