AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93803

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93803.t1 MTR_8g043650 88.608 237 27 0 1 237 1 237 1.23e-156 434
MS.gene93803.t1 MTR_1g012570 87.764 237 29 0 1 237 1 237 5.35e-145 404
MS.gene93803.t1 MTR_1g105905 87.273 220 28 0 18 237 1 220 6.07e-144 401
MS.gene93803.t1 MTR_1g105910 86.076 237 33 0 1 237 1 237 9.89e-144 401
MS.gene93803.t1 MTR_1g105920 86.758 219 29 0 1 219 1 219 9.05e-142 396
MS.gene93803.t1 MTR_2g030740 83.544 237 39 0 1 237 1 237 9.54e-138 386
MS.gene93803.t1 MTR_3g052920 83.105 219 37 0 1 219 1 219 1.91e-135 380
MS.gene93803.t1 MTR_3g052870 78.539 219 28 3 1 219 1 200 5.66e-118 335
MS.gene93803.t1 MTR_5g055100 67.089 237 78 0 1 237 1 237 1.25e-116 333
MS.gene93803.t1 MTR_3g030770 71.064 235 50 3 1 225 1 227 1.51e-115 330
MS.gene93803.t1 MTR_1g108510 70.213 235 52 3 1 225 1 227 3.57e-114 326
MS.gene93803.t1 MTR_0121s0080 69.198 237 72 1 1 237 1 236 4.09e-114 326
MS.gene93803.t1 MTR_1g077360 68.889 225 70 0 1 225 1 225 7.39e-114 326
MS.gene93803.t1 MTR_2g085280 66.102 236 80 0 1 236 1 236 1.51e-113 325
MS.gene93803.t1 MTR_2g085250 66.102 236 80 0 1 236 1 236 4.21e-113 324
MS.gene93803.t1 MTR_1g075600 68.889 225 70 0 1 225 1 225 1.85e-112 322
MS.gene93803.t1 MTR_2g093190 70.638 235 51 3 1 225 1 227 3.43e-112 321
MS.gene93803.t1 MTR_5g045560 68.776 237 74 0 1 237 1 237 2.21e-110 317
MS.gene93803.t1 MTR_1g106070 82.967 182 31 0 1 182 1 182 1.26e-109 313
MS.gene93803.t1 MTR_1g108580 71.296 216 54 1 1 216 1 208 3.05e-107 308
MS.gene93803.t1 MTR_5g053390 66.667 225 75 0 1 225 1 225 4.10e-106 306
MS.gene93803.t1 MTR_7g062350 63.229 223 80 2 16 237 27 248 2.84e-94 276
MS.gene93803.t1 MTR_1g075570 63.483 178 51 1 18 195 1 164 9.83e-70 211
MS.gene93803.t1 MTR_0121s0100 75.000 128 32 0 1 128 1 128 1.26e-64 197
MS.gene93803.t1 MTR_3g030780 72.868 129 35 0 1 129 1 129 4.10e-62 191
MS.gene93803.t1 MTR_3g080940 49.215 191 93 1 7 193 7 197 1.03e-61 192
MS.gene93803.t1 MTR_3g067910 65.686 102 35 0 21 122 2 103 3.86e-44 144
MS.gene93803.t1 MTR_2g105290 39.766 171 93 2 5 172 8 171 3.73e-42 141
MS.gene93803.t1 MTR_8g086290 40.462 173 89 3 5 170 8 173 2.49e-40 137
MS.gene93803.t1 MTR_7g028448 44.805 154 73 3 5 158 8 149 4.02e-36 125
MS.gene93803.t1 MTR_4g036915 44.805 154 73 3 5 158 8 149 4.02e-36 125
MS.gene93803.t1 MTR_4g127140 37.297 185 96 4 5 176 8 185 1.17e-31 115
MS.gene93803.t1 MTR_1g108500 55.752 113 27 2 8 118 94 185 8.13e-29 111
MS.gene93803.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 1.66e-28 103
MS.gene93803.t1 MTR_3g067870 71.429 63 18 0 16 78 83 145 7.33e-25 96.7
MS.gene93803.t1 MTR_1g047550 39.860 143 68 4 9 135 2 142 3.37e-23 92.8
MS.gene93803.t1 MTR_1g054265 44.144 111 59 2 9 118 2 110 1.26e-22 90.9
MS.gene93803.t1 MTR_8g051580 41.270 126 69 2 9 131 2 125 1.41e-22 91.3
MS.gene93803.t1 MTR_8g079502 59.420 69 28 0 9 77 2 70 1.47e-22 91.3
MS.gene93803.t1 MTR_1g063160 43.243 111 60 2 9 118 2 110 2.90e-22 90.5
MS.gene93803.t1 MTR_3g067915 61.194 67 26 0 60 126 30 96 2.35e-21 85.5
MS.gene93803.t1 MTR_4g131030 37.302 126 63 3 9 118 2 127 2.86e-21 88.6
MS.gene93803.t1 MTR_8g046350 38.462 130 72 3 9 135 2 126 4.36e-21 86.7
MS.gene93803.t1 MTR_4g094632 40.000 110 64 1 9 118 2 109 3.96e-20 84.0
MS.gene93803.t1 MTR_3g005530 51.471 68 33 0 9 76 2 69 2.70e-18 80.9
MS.gene93803.t1 MTR_4g094638 40.566 106 62 1 9 113 2 107 2.83e-18 79.7
MS.gene93803.t1 MTR_1g053070 35.811 148 80 3 9 155 2 135 3.50e-18 80.9
MS.gene93803.t1 MTR_3g452380 45.238 84 46 0 3 86 11 94 1.11e-17 79.7
MS.gene93803.t1 MTR_4g102530 49.315 73 37 0 10 82 3 75 1.14e-17 79.0
MS.gene93803.t1 MTR_4g093970 54.545 66 30 0 10 75 29 94 1.80e-17 79.0
MS.gene93803.t1 MTR_5g066180 50.000 68 34 0 9 76 2 69 4.86e-17 77.4
MS.gene93803.t1 MTR_2g017865 35.606 132 75 2 9 131 17 147 6.95e-17 77.8
MS.gene93803.t1 MTR_8g033220 27.027 222 136 6 10 220 3 209 8.73e-17 76.6
MS.gene93803.t1 MTR_8g033270 50.000 68 34 0 9 76 2 69 1.06e-16 77.0
MS.gene93803.t1 MTR_8g033220 27.027 222 136 6 10 220 3 209 1.08e-16 76.6
MS.gene93803.t1 MTR_8g022970 32.895 152 99 3 8 158 17 166 2.02e-16 75.1
MS.gene93803.t1 MTR_8g087860 50.000 68 34 0 9 76 18 85 2.10e-16 76.3
MS.gene93803.t1 MTR_1g101970 48.529 68 35 0 9 76 2 69 3.59e-16 74.3
MS.gene93803.t1 MTR_6g464720 47.826 69 35 1 9 76 2 70 4.66e-16 75.1
MS.gene93803.t1 MTR_4g109830 46.377 69 36 1 9 76 2 70 4.78e-16 75.1
MS.gene93803.t1 MTR_7g075870 37.273 110 67 1 10 119 3 110 8.61e-16 73.9
MS.gene93803.t1 MTR_5g032150 26.705 176 99 6 9 177 2 154 1.21e-15 73.9
MS.gene93803.t1 MTR_2g009890 47.059 68 36 0 9 76 2 69 1.29e-15 74.3
MS.gene93803.t1 MTR_5g032520 27.119 177 99 6 9 178 2 155 1.71e-15 73.2
MS.gene93803.t1 MTR_3g102570 40.385 104 59 3 9 111 2 103 2.58e-15 73.9
MS.gene93803.t1 MTR_0003s0590 34.247 146 65 3 9 123 2 147 3.59e-15 72.8
MS.gene93803.t1 MTR_6g015975 47.826 69 35 1 9 76 2 70 3.90e-15 72.8
MS.gene93803.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 4.08e-15 72.4
MS.gene93803.t1 MTR_5g031000 47.059 68 36 0 9 76 2 69 4.36e-15 72.4
MS.gene93803.t1 MTR_7g016600 47.826 69 35 1 9 76 2 70 4.57e-15 72.4
MS.gene93803.t1 MTR_8g066260 39.759 83 47 1 9 91 2 81 5.30e-15 72.4
MS.gene93803.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 6.12e-15 67.8
MS.gene93803.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 7.86e-15 71.6
MS.gene93803.t1 MTR_5g021270 48.571 70 34 1 9 76 2 71 8.22e-15 71.6
MS.gene93803.t1 MTR_3g437790 33.803 142 77 4 26 158 30 163 9.14e-15 70.5
MS.gene93803.t1 MTR_5g046790 43.662 71 37 1 9 79 2 69 9.26e-15 70.9
MS.gene93803.t1 MTR_7g075870 36.937 111 67 2 10 119 3 111 1.62e-14 70.5
MS.gene93803.t1 MTR_4g084740 44.737 76 40 2 9 83 2 76 1.66e-14 72.0
MS.gene93803.t1 MTR_5g046870 46.377 69 36 1 9 76 2 70 2.56e-14 67.4
MS.gene93803.t1 MTR_7g016630 42.029 69 39 1 9 76 2 70 3.47e-14 70.1
MS.gene93803.t1 MTR_1g038300 45.714 70 36 1 9 76 2 71 3.65e-14 69.7
MS.gene93803.t1 MTR_3g088615 42.857 70 38 1 9 76 2 71 3.74e-14 68.9
MS.gene93803.t1 MTR_1g029670 45.455 66 35 1 9 74 2 66 7.97e-14 67.8
MS.gene93803.t1 MTR_4g051538 33.742 163 90 5 5 164 5 152 9.53e-14 68.6
MS.gene93803.t1 MTR_3g109930 33.121 157 86 6 27 177 20 163 1.12e-13 67.4
MS.gene93803.t1 MTR_5g066960 47.368 57 30 0 9 65 2 58 1.57e-13 63.9
MS.gene93803.t1 MTR_7g075850 44.286 70 37 1 9 76 2 71 1.96e-13 68.2
MS.gene93803.t1 MTR_3g084980 46.377 69 36 1 9 76 2 70 2.20e-13 67.8
MS.gene93803.t1 MTR_8g097090 44.928 69 37 1 9 76 2 70 2.54e-13 67.8
MS.gene93803.t1 MTR_3g113030 25.862 174 107 4 9 181 2 154 3.30e-13 67.0
MS.gene93803.t1 MTR_4g109810 50.000 56 28 0 9 64 2 57 4.40e-13 67.0
MS.gene93803.t1 MTR_4g093030 40.541 74 44 0 9 82 2 75 4.04e-12 62.8
MS.gene93803.t1 MTR_4g036050 38.571 70 42 1 9 77 2 71 3.99e-11 60.5
MS.gene93803.t1 MTR_4g036050 38.571 70 42 1 9 77 2 71 4.25e-11 60.1
MS.gene93803.t1 MTR_4g036050 38.571 70 42 1 9 77 2 71 4.50e-11 60.5
MS.gene93803.t1 MTR_4g036050 38.571 70 42 1 9 77 2 71 5.10e-11 60.5
MS.gene93803.t1 MTR_4g108720 31.405 121 76 5 9 125 2 119 8.47e-11 61.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93803.t1 AT5G60440 54.255 188 79 3 5 189 3 186 4.14e-62 196
MS.gene93803.t1 AT2G24840 46.471 170 80 4 6 169 60 224 9.95e-42 143
MS.gene93803.t1 AT1G01530 41.053 190 104 3 4 192 2 184 2.19e-39 136
MS.gene93803.t1 AT1G65360 39.153 189 108 3 5 192 3 185 5.71e-39 135
MS.gene93803.t1 AT4G36590 44.444 162 84 2 5 160 3 164 1.50e-37 132
MS.gene93803.t1 AT2G34440 37.037 162 98 3 9 169 2 160 2.08e-28 106
MS.gene93803.t1 AT3G66656 41.221 131 72 2 9 134 2 132 4.40e-25 97.8
MS.gene93803.t1 AT3G04100 29.885 174 118 3 2 171 7 180 9.54e-23 92.4
MS.gene93803.t1 AT1G72350 35.333 150 64 4 9 158 43 159 1.34e-22 92.4
MS.gene93803.t1 AT4G24540 35.570 149 79 4 9 157 2 133 6.73e-19 82.4
MS.gene93803.t1 AT4G22950 48.684 76 39 0 10 85 3 78 1.06e-18 80.9
MS.gene93803.t1 AT4G22950 48.684 76 39 0 10 85 3 78 4.10e-18 80.5
MS.gene93803.t1 AT4G22950 48.684 76 39 0 10 85 3 78 4.10e-18 80.5
MS.gene93803.t1 AT2G45650 51.471 68 33 0 9 76 2 69 4.25e-18 80.9
MS.gene93803.t1 AT1G28460 27.429 175 118 2 5 173 4 175 5.26e-18 79.3
MS.gene93803.t1 AT4G09960 45.238 84 45 1 9 91 2 85 5.51e-18 80.1
MS.gene93803.t1 AT2G45660 51.471 68 33 0 10 77 3 70 5.64e-18 78.6
MS.gene93803.t1 AT4G09960 45.238 84 45 1 9 91 2 85 6.72e-18 80.1
MS.gene93803.t1 AT4G09960 45.238 84 45 1 9 91 3 86 6.76e-18 80.1
MS.gene93803.t1 AT4G18960 30.769 234 128 8 5 218 15 234 7.45e-18 80.1
MS.gene93803.t1 AT4G09960 45.238 84 45 1 9 91 12 95 8.71e-18 79.7
MS.gene93803.t1 AT4G09960 45.238 84 45 1 9 91 28 111 1.15e-17 79.7
MS.gene93803.t1 AT2G45660 51.471 68 33 0 10 77 3 70 1.50e-17 78.6
MS.gene93803.t1 AT4G09960 45.238 84 45 1 9 91 97 180 2.96e-17 79.7
MS.gene93803.t1 AT1G29962 26.857 175 122 3 5 173 4 178 4.06e-17 77.0
MS.gene93803.t1 AT5G51870 52.239 67 32 0 10 76 3 69 4.82e-17 76.3
MS.gene93803.t1 AT5G51870 52.239 67 32 0 10 76 3 69 5.98e-17 77.0
MS.gene93803.t1 AT5G51870 48.611 72 37 0 5 76 21 92 9.60e-17 76.3
MS.gene93803.t1 AT5G51870 52.239 67 32 0 10 76 3 69 1.07e-16 76.6
MS.gene93803.t1 AT5G51870 52.239 67 32 0 10 76 13 79 1.30e-16 76.6
MS.gene93803.t1 AT2G22540 36.842 133 74 4 9 132 2 133 1.47e-16 76.6
MS.gene93803.t1 AT2G22540 36.842 133 74 4 9 132 2 133 1.47e-16 76.6
MS.gene93803.t1 AT3G57230 45.588 68 37 0 9 76 2 69 1.59e-16 74.3
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 1.68e-16 74.7
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 1.68e-16 74.7
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 1.68e-16 74.7
MS.gene93803.t1 AT5G62165 47.761 67 35 0 10 76 3 69 1.79e-16 73.2
MS.gene93803.t1 AT3G30260 29.697 165 98 4 9 172 2 149 2.02e-16 76.3
MS.gene93803.t1 AT3G61120 50.000 68 34 0 9 76 2 69 2.16e-16 76.3
MS.gene93803.t1 AT5G10140 49.275 69 34 1 9 76 2 70 2.42e-16 74.3
MS.gene93803.t1 AT5G23260 44.330 97 46 3 2 90 9 105 2.42e-16 76.3
MS.gene93803.t1 AT2G42830 46.053 76 41 0 1 76 9 84 2.46e-16 75.9
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 2.47e-16 73.9
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 2.47e-16 73.9
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 2.47e-16 73.9
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 2.47e-16 73.9
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 2.47e-16 73.9
MS.gene93803.t1 AT5G23260 44.330 97 46 3 2 90 9 105 2.56e-16 76.3
MS.gene93803.t1 AT3G54340 38.346 133 73 5 9 134 2 132 2.56e-16 75.9
MS.gene93803.t1 AT3G58780 49.296 71 36 0 6 76 14 84 2.61e-16 75.9
MS.gene93803.t1 AT2G42830 46.053 76 41 0 1 76 9 84 2.64e-16 75.9
MS.gene93803.t1 AT3G58780 49.296 71 36 0 6 76 20 90 2.81e-16 75.9
MS.gene93803.t1 AT5G10140 49.275 69 34 1 9 76 2 70 3.52e-16 74.3
MS.gene93803.t1 AT5G10140 49.275 69 34 1 9 76 2 70 4.09e-16 74.3
MS.gene93803.t1 AT4G37940 47.059 68 36 0 9 76 2 69 4.29e-16 74.7
MS.gene93803.t1 AT4G37940 47.059 68 36 0 9 76 2 69 4.38e-16 73.9
MS.gene93803.t1 AT3G57390 48.529 68 35 0 9 76 2 69 4.44e-16 75.1
MS.gene93803.t1 AT5G23260 45.455 88 42 2 9 90 2 89 4.48e-16 75.1
MS.gene93803.t1 AT5G10140 49.275 69 34 1 9 76 2 70 4.83e-16 73.9
MS.gene93803.t1 AT5G23260 45.455 88 42 2 9 90 2 89 5.17e-16 75.1
MS.gene93803.t1 AT4G37940 47.059 68 36 0 9 76 2 69 5.20e-16 74.7
MS.gene93803.t1 AT3G58780 49.296 71 36 0 6 76 14 84 5.41e-16 75.5
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 5.45e-16 73.9
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 5.45e-16 73.9
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 6.03e-16 74.3
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 6.03e-16 74.3
MS.gene93803.t1 AT5G62165 37.255 102 52 2 10 111 3 92 6.03e-16 74.3
MS.gene93803.t1 AT5G13790 50.000 68 34 0 9 76 2 69 7.42e-16 75.1
MS.gene93803.t1 AT3G57230 45.588 68 37 0 9 76 2 69 7.44e-16 74.7
MS.gene93803.t1 AT3G57230 45.588 68 37 0 9 76 2 69 7.44e-16 74.7
MS.gene93803.t1 AT5G13790 50.000 68 34 0 9 76 2 69 7.47e-16 75.1
MS.gene93803.t1 AT5G51860 50.746 67 33 0 10 76 3 69 7.79e-16 73.9
MS.gene93803.t1 AT3G57390 48.529 68 35 0 9 76 2 69 1.00e-15 74.7
MS.gene93803.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.14e-15 73.6
MS.gene93803.t1 AT4G11880 47.222 72 37 1 10 80 3 74 1.45e-15 72.4
MS.gene93803.t1 AT4G11880 47.222 72 37 1 10 80 3 74 1.45e-15 72.4
MS.gene93803.t1 AT1G69120 42.169 83 45 1 9 91 2 81 1.95e-15 73.2
MS.gene93803.t1 AT5G60910 47.887 71 34 1 9 79 2 69 2.17e-15 73.6
MS.gene93803.t1 AT1G22130 35.238 105 67 1 9 112 2 106 2.28e-15 74.3
MS.gene93803.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.37e-15 73.2
MS.gene93803.t1 AT2G22630 45.588 68 37 0 9 76 2 69 2.37e-15 73.2
MS.gene93803.t1 AT4G11880 47.222 72 37 1 10 80 3 74 2.56e-15 72.8
MS.gene93803.t1 AT4G11880 47.222 72 37 1 10 80 3 74 2.56e-15 72.8
MS.gene93803.t1 AT1G77980 36.190 105 66 1 9 112 2 106 2.80e-15 74.3
MS.gene93803.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.84e-15 73.2
MS.gene93803.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.84e-15 73.2
MS.gene93803.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.84e-15 73.2
MS.gene93803.t1 AT1G77950 44.737 76 40 2 9 83 2 76 2.84e-15 73.2
MS.gene93803.t1 AT1G69120 39.560 91 52 1 9 99 2 89 3.80e-15 72.8
MS.gene93803.t1 AT1G26310 46.377 69 36 1 9 76 2 70 3.91e-15 72.8
MS.gene93803.t1 AT1G17310 50.633 79 37 1 8 86 47 123 7.97e-15 71.2
MS.gene93803.t1 AT5G20240 45.714 70 36 1 9 76 2 71 9.43e-15 69.7
MS.gene93803.t1 AT5G15800 47.826 69 35 1 9 76 2 70 9.71e-15 71.6
MS.gene93803.t1 AT1G17310 50.633 79 37 1 8 86 58 134 1.02e-14 71.2
MS.gene93803.t1 AT5G20240 45.714 70 36 1 9 76 2 71 1.44e-14 70.5
MS.gene93803.t1 AT5G15800 47.826 69 35 1 9 76 2 70 1.56e-14 71.2
MS.gene93803.t1 AT2G14210 44.928 69 37 1 9 76 2 70 3.06e-14 70.1
MS.gene93803.t1 AT2G22540 36.090 133 70 5 9 132 2 128 4.02e-14 69.7
MS.gene93803.t1 AT2G14210 44.928 69 37 1 9 76 2 70 4.19e-14 69.7
MS.gene93803.t1 AT5G65050 44.928 69 37 1 9 76 2 70 4.45e-14 68.6
MS.gene93803.t1 AT3G02310 46.377 69 36 1 9 76 2 70 5.72e-14 68.6
MS.gene93803.t1 AT5G65050 44.928 69 37 1 9 76 2 70 7.54e-14 68.2
MS.gene93803.t1 AT1G28450 26.627 169 114 4 5 163 4 172 8.02e-14 68.2
MS.gene93803.t1 AT3G58780 51.667 60 29 0 6 65 14 73 8.36e-14 68.9
MS.gene93803.t1 AT5G65050 44.928 69 37 1 9 76 2 70 8.44e-14 68.2
MS.gene93803.t1 AT5G65050 44.928 69 37 1 9 76 2 70 8.93e-14 67.8
MS.gene93803.t1 AT3G58780 51.667 60 29 0 6 65 14 73 1.06e-13 69.3
MS.gene93803.t1 AT2G03710 44.286 70 37 1 9 76 2 71 1.16e-13 67.8
MS.gene93803.t1 AT5G65060 44.928 69 37 1 9 76 2 70 1.60e-13 67.0
MS.gene93803.t1 AT5G65060 44.928 69 37 1 9 76 2 70 1.71e-13 67.4
MS.gene93803.t1 AT3G02310 46.377 69 36 1 9 76 2 70 1.73e-13 68.2
MS.gene93803.t1 AT5G65060 44.928 69 37 1 9 76 2 70 1.88e-13 67.4
MS.gene93803.t1 AT1G24260 28.340 247 143 10 9 234 2 235 2.25e-13 67.8
MS.gene93803.t1 AT2G03710 44.286 70 37 1 9 76 2 71 2.45e-13 67.8
MS.gene93803.t1 AT1G24260 51.786 56 27 0 9 64 2 57 2.53e-13 67.4
MS.gene93803.t1 AT1G24260 51.786 56 27 0 9 64 2 57 2.53e-13 67.8
MS.gene93803.t1 AT2G03710 44.286 70 37 1 9 76 2 71 2.53e-13 67.8
MS.gene93803.t1 AT1G47760 32.231 121 66 3 9 129 2 106 3.27e-13 66.2
MS.gene93803.t1 AT1G71692 42.857 70 39 1 9 77 2 71 4.16e-13 66.6
MS.gene93803.t1 AT5G65070 40.580 69 40 1 9 76 2 70 6.43e-13 64.7
MS.gene93803.t1 AT5G65070 40.580 69 40 1 9 76 2 70 1.21e-12 65.1
MS.gene93803.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.33e-12 64.7
MS.gene93803.t1 AT5G65070 40.580 69 40 1 9 76 2 70 2.57e-12 64.3
MS.gene93803.t1 AT5G65070 45.614 57 31 0 9 65 2 58 9.83e-12 63.2
MS.gene93803.t1 AT5G49420 27.317 205 105 7 5 180 3 192 3.94e-11 62.4
MS.gene93803.t1 AT4G37435 38.889 72 43 1 9 79 2 73 4.05e-11 60.5
MS.gene93803.t1 AT5G27130 41.176 85 46 2 2 82 6 90 7.52e-11 61.2
MS.gene93803.t1 AT5G65080 41.333 75 41 2 5 76 3 77 8.62e-11 59.7

Find 54 sgRNAs with CRISPR-Local

Find 71 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTTGAGTTTGCGGAGGATT+TGG 0.289021 1.2:+78672433 None:intergenic
ATGAGGGGAGGAGGTGGATA+TGG 0.298786 1.2:-78672349 MS.gene93803:CDS
TGGTGGGCTGGTCCTATTGA+TGG 0.299486 1.2:-78672619 MS.gene93803:CDS
ATTGCATGGTACCATTGTTT+TGG 0.337688 1.2:+78672776 None:intergenic
AAGCTACAGAGACTCAATTT+TGG 0.343868 1.2:-78672639 MS.gene93803:CDS
TGTTTGGTTTGAACAATATG+AGG 0.379936 1.2:-78672366 MS.gene93803:CDS
ATGTTGCAACCTCATTTGTT+TGG 0.381828 1.2:-78672382 MS.gene93803:CDS
TGCTAATAGCCTTGTAATCC+AGG 0.406533 1.2:-78672527 MS.gene93803:CDS
GTCCTATTGATGGGATGAAT+AGG 0.423671 1.2:-78672609 MS.gene93803:CDS
TCTTCTCGTTGTCCAGTAGC+TGG 0.424175 1.2:+78672692 None:intergenic
TCCTATTGATGGGATGAATA+GGG 0.430427 1.2:-78672608 MS.gene93803:CDS
AACAATATGAGGGGAGGAGG+TGG 0.432926 1.2:-78672355 MS.gene93803:CDS
GGTGGGCTGGTCCTATTGAT+GGG 0.454181 1.2:-78672618 MS.gene93803:CDS
GACTCAGATCAACCAGCTAC+TGG 0.455350 1.2:-78672704 MS.gene93803:CDS
ATGATCGAGAGGCATGTTAG+AGG 0.481598 1.2:+78672459 None:intergenic
TCCCTATTCATCCCATCAAT+AGG 0.492795 1.2:+78672607 None:intergenic
GCTGGAAACATTTGAGTTTG+CGG 0.497653 1.2:+78672424 None:intergenic
AACAAATGAGGTTGCAACAT+GGG 0.505197 1.2:+78672385 None:intergenic
TGGCCAACCCAATGTGGATA+CGG 0.509185 1.2:-78672830 MS.gene93803:CDS
GTTTGGTTTGAACAATATGA+GGG 0.513819 1.2:-78672365 MS.gene93803:CDS
TCTATGACCGTATCCACATT+GGG 0.514276 1.2:+78672823 None:intergenic
TAGGAGCACCCTGGATTACA+AGG 0.515487 1.2:+78672518 None:intergenic
GCTCGCGCACGTTGGCGCTA+CGG 0.534754 1.2:+78672740 None:intergenic
GGGCTCGGATCAAAAGAATC+CGG 0.538178 1.2:+78672321 None:intergenic
TTGAACAATATGAGGGGAGG+AGG 0.542532 1.2:-78672358 MS.gene93803:CDS
TTGTTCAAACCAAACAAATG+AGG 0.545399 1.2:+78672373 None:intergenic
ATCTATGACCGTATCCACAT+TGG 0.545676 1.2:+78672822 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.2:-78672942 MS.gene93803:CDS
AGCGACATGTGCACCACAGA+TGG 0.558797 1.2:+78672891 None:intergenic
GGAGGTGGATATGGACCCTC+CGG 0.560213 1.2:-78672340 MS.gene93803:CDS
CTTCAACCATGTCGAGTGGA+AGG 0.562158 1.2:-78673029 None:intergenic
AATGAAAATACCTTCTCTCC+AGG 0.563686 1.2:+78672853 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.2:-78672943 MS.gene93803:CDS
ACAGATGGTACAAAGCTCAC+TGG 0.589892 1.2:+78672906 None:intergenic
GGTTTGAACAATATGAGGGG+AGG 0.594346 1.2:-78672361 MS.gene93803:CDS
AAACAAATGAGGTTGCAACA+TGG 0.599507 1.2:+78672384 None:intergenic
TGACCGTATCCACATTGGGT+TGG 0.608969 1.2:+78672827 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.2:+78672929 None:intergenic
AGTATTGAGCTCGCGCACGT+TGG 0.612298 1.2:+78672732 None:intergenic
ACAAATGAGGTTGCAACATG+GGG 0.619371 1.2:+78672386 None:intergenic
TTCATTTGGCCAACCCAATG+TGG 0.622502 1.2:-78672836 MS.gene93803:CDS
GGATTTGGTTGATGATCGAG+AGG 0.624852 1.2:+78672448 None:intergenic
GCTAATAGCCTTGTAATCCA+GGG 0.631859 1.2:-78672526 MS.gene93803:CDS
TGTGCTTCAACCATGTCGAG+TGG 0.638522 1.2:-78673033 None:intergenic
CGAGTCCCACCCCAAAACAA+TGG 0.639467 1.2:-78672787 MS.gene93803:CDS
GTGAGTCTCAATGAATTGCA+TGG 0.640763 1.2:+78672762 None:intergenic
TTTGGTTTGAACAATATGAG+GGG 0.643683 1.2:-78672364 MS.gene93803:CDS
AGGTTTGAATAGGAGCACCC+TGG 0.646620 1.2:+78672509 None:intergenic
GGAAACATTTGAGTTTGCGG+AGG 0.647148 1.2:+78672427 None:intergenic
AGTGAGCTTTGTACCATCTG+TGG 0.652271 1.2:-78672904 MS.gene93803:CDS
CTCGGATCAAAAGAATCCGG+AGG 0.655674 1.2:+78672324 None:intergenic
TCGGATCAAAAGAATCCGGA+GGG 0.678771 1.2:+78672325 None:intergenic
TCGAGTGGAAGGAAAAGCCG+AGG 0.691796 1.2:-78673018 MS.gene93803:CDS
GGACAACGAGAAGAAACGTG+CGG 0.746947 1.2:-78672683 MS.gene93803:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.2:78672362-78672381 None:intergenic 20.0%
! AAAAATGGAAAGGTTTGAAT+AGG + chr1.2:78672855-78672874 None:intergenic 25.0%
! ATTTCCAACAAAAAATGGAA+AGG + chr1.2:78672865-78672884 None:intergenic 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1.2:78672767-78672786 MS.gene93803:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1.2:78672770-78672789 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG - chr1.2:78672773-78672792 MS.gene93803:CDS 25.0%
!!! TTTCCATTTTTTGTTGGAAA+TGG - chr1.2:78672864-78672883 MS.gene93803:CDS 25.0%
GAACCATTTCCAACAAAAAA+TGG + chr1.2:78672870-78672889 None:intergenic 30.0%
TTGTTCAAACCAAACAAATG+AGG + chr1.2:78672981-78673000 None:intergenic 30.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG - chr1.2:78672776-78672795 MS.gene93803:CDS 30.0%
!! GTTTGGTTTGAACAATATGA+GGG - chr1.2:78672986-78673005 MS.gene93803:CDS 30.0%
!! TGTTTGGTTTGAACAATATG+AGG - chr1.2:78672985-78673004 MS.gene93803:CDS 30.0%
!! TTTGGTTTGAACAATATGAG+GGG - chr1.2:78672987-78673006 MS.gene93803:CDS 30.0%
!!! CAAACCTTTCCATTTTTTGT+TGG - chr1.2:78672858-78672877 MS.gene93803:CDS 30.0%
AAACAAATGAGGTTGCAACA+TGG + chr1.2:78672970-78672989 None:intergenic 35.0%
AACAAATGAGGTTGCAACAT+GGG + chr1.2:78672969-78672988 None:intergenic 35.0%
AATGAAAATACCTTCTCTCC+AGG + chr1.2:78672501-78672520 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG - chr1.2:78672969-78672988 MS.gene93803:CDS 35.0%
TCCTATTGATGGGATGAATA+GGG - chr1.2:78672743-78672762 MS.gene93803:CDS 35.0%
! AAGCTACAGAGACTCAATTT+TGG - chr1.2:78672712-78672731 MS.gene93803:CDS 35.0%
! ATTGCATGGTACCATTGTTT+TGG + chr1.2:78672578-78672597 None:intergenic 35.0%
! TTGCATGGTACCATTGTTTT+GGG + chr1.2:78672577-78672596 None:intergenic 35.0%
!! TACAGAGACTCAATTTTGGT+GGG - chr1.2:78672716-78672735 MS.gene93803:CDS 35.0%
!!! GGAGAGAAGGTATTTTCATT+TGG - chr1.2:78672501-78672520 MS.gene93803:CDS 35.0%
ACAAATGAGGTTGCAACATG+GGG + chr1.2:78672968-78672987 None:intergenic 40.0%
ATCTATGACCGTATCCACAT+TGG + chr1.2:78672532-78672551 None:intergenic 40.0%
GTCCTATTGATGGGATGAAT+AGG - chr1.2:78672742-78672761 MS.gene93803:CDS 40.0%
GTGAGTCTCAATGAATTGCA+TGG + chr1.2:78672592-78672611 None:intergenic 40.0%
TCCCTATTCATCCCATCAAT+AGG + chr1.2:78672747-78672766 None:intergenic 40.0%
TCTATGACCGTATCCACATT+GGG + chr1.2:78672531-78672550 None:intergenic 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + chr1.2:78672921-78672940 None:intergenic 40.0%
! CTACAGAGACTCAATTTTGG+TGG - chr1.2:78672715-78672734 MS.gene93803:CDS 40.0%
! GCTGGAAACATTTGAGTTTG+CGG + chr1.2:78672930-78672949 None:intergenic 40.0%
!! GCTAATAGCCTTGTAATCCA+GGG - chr1.2:78672825-78672844 MS.gene93803:CDS 40.0%
!! TGCATGGTACCATTGTTTTG+GGG + chr1.2:78672576-78672595 None:intergenic 40.0%
!! TGCTAATAGCCTTGTAATCC+AGG - chr1.2:78672824-78672843 MS.gene93803:CDS 40.0%
ACAGATGGTACAAAGCTCAC+TGG + chr1.2:78672448-78672467 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.2:78672425-78672444 None:intergenic 45.0%
GGTTTGAACAATATGAGGGG+AGG - chr1.2:78672990-78673009 MS.gene93803:CDS 45.0%
TTCATTTGGCCAACCCAATG+TGG - chr1.2:78672515-78672534 MS.gene93803:CDS 45.0%
TTGAACAATATGAGGGGAGG+AGG - chr1.2:78672993-78673012 MS.gene93803:CDS 45.0%
! AGTGAGCTTTGTACCATCTG+TGG - chr1.2:78672447-78672466 MS.gene93803:CDS 45.0%
! ATGATCGAGAGGCATGTTAG+AGG + chr1.2:78672895-78672914 None:intergenic 45.0%
! GGAAACATTTGAGTTTGCGG+AGG + chr1.2:78672927-78672946 None:intergenic 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.2:78672353-78672372 None:intergenic 45.0%
! TGTTTTCTCACCTGGAGAGA+AGG - chr1.2:78672488-78672507 MS.gene93803:CDS 45.0%
!! GGATTTGGTTGATGATCGAG+AGG + chr1.2:78672906-78672925 None:intergenic 45.0%
!! GGGTTCTGAAAAAACTGTGC+TGG + chr1.2:78672948-78672967 None:intergenic 45.0%
!!! ATGGTACCATTGTTTTGGGG+TGG + chr1.2:78672573-78672592 None:intergenic 45.0%
!!! TGGTACCATTGTTTTGGGGT+GGG + chr1.2:78672572-78672591 None:intergenic 45.0%
AACAATATGAGGGGAGGAGG+TGG - chr1.2:78672996-78673015 MS.gene93803:CDS 50.0%
GACTCAGATCAACCAGCTAC+TGG - chr1.2:78672647-78672666 MS.gene93803:CDS 50.0%
GGACAACGAGAAGAAACGTG+CGG - chr1.2:78672668-78672687 MS.gene93803:CDS 50.0%
TCTTCTCGTTGTCCAGTAGC+TGG + chr1.2:78672662-78672681 None:intergenic 50.0%
TGACCGTATCCACATTGGGT+TGG + chr1.2:78672527-78672546 None:intergenic 50.0%
TGGCCAACCCAATGTGGATA+CGG - chr1.2:78672521-78672540 MS.gene93803:CDS 50.0%
!! AGGTTTGAATAGGAGCACCC+TGG + chr1.2:78672845-78672864 None:intergenic 50.0%
!! GAGACTCAATTTTGGTGGGC+TGG - chr1.2:78672720-78672739 MS.gene93803:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.2:78672480-78672499 MS.gene93803:CDS 50.0%
!! TAGGAGCACCCTGGATTACA+AGG + chr1.2:78672836-78672855 None:intergenic 50.0%
AGCGACATGTGCACCACAGA+TGG + chr1.2:78672463-78672482 None:intergenic 55.0%
ATGAGGGGAGGAGGTGGATA+TGG - chr1.2:78673002-78673021 MS.gene93803:CDS 55.0%
CGAGTCCCACCCCAAAACAA+TGG - chr1.2:78672564-78672583 MS.gene93803:CDS 55.0%
TCGAGTGGAAGGAAAAGCCG+AGG - chr1.2:78672333-78672352 MS.gene93803:CDS 55.0%
! AGTATTGAGCTCGCGCACGT+TGG + chr1.2:78672622-78672641 None:intergenic 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.2:78672408-78672427 MS.gene93803:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.2:78672409-78672428 MS.gene93803:CDS 55.0%
!! GGTGGGCTGGTCCTATTGAT+GGG - chr1.2:78672733-78672752 MS.gene93803:CDS 55.0%
!! TGGTGGGCTGGTCCTATTGA+TGG - chr1.2:78672732-78672751 MS.gene93803:CDS 55.0%
GGAGGTGGATATGGACCCTC+CGG - chr1.2:78673011-78673030 MS.gene93803:CDS 60.0%
GCTCGCGCACGTTGGCGCTA+CGG + chr1.2:78672614-78672633 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 78672330 78673043 78672330 ID=MS.gene93803
chr1.2 mRNA 78672330 78673043 78672330 ID=MS.gene93803.t1;Parent=MS.gene93803
chr1.2 exon 78672330 78673043 78672330 ID=MS.gene93803.t1.exon1;Parent=MS.gene93803.t1
chr1.2 CDS 78672330 78673043 78672330 ID=cds.MS.gene93803.t1;Parent=MS.gene93803.t1
Gene Sequence

>MS.gene93803

ATGTCGAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAATGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGTACCATCTGTGGTGCACATGTCGCTCTCGTTGTTTTCTCACCTGGAGAGAAGGTATTTTCATTTGGCCAACCCAATGTGGATACGGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAAACAATGGTACCATGCAATTCATTGAGACTCACCGTAGCGCCAACGTGCGCGAGCTCAATACTCATTTGACTCAGATCAACCAGCTACTGGACAACGAGAAGAAACGTGCGGAAGAGCTGAGACACTTGCGCAAAGCTACAGAGACTCAATTTTGGTGGGCTGGTCCTATTGATGGGATGAATAGGGACCAACTTGAATTTTTCAAAAAGGCTTTGGAGGCACTTTCGAAACTTGTTGCAGATCATGCTAATAGCCTTGTAATCCAGGGTGCTCCTATTCAAACCTTTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCGATCATCAACCAAATCCTCCGCAAACTCAAATGTTTCCAGCACAGTTTTTTCAGAACCCCATGTTGCAACCTCATTTGTTTGGTTTGAACAATATGAGGGGAGGAGGTGGATATGGACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene93803.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTICGAHVALVVFSPGEKVFSFGQPNVDTVIDRYLSRVPPQNNGTMQFIETHRSANVRELNTHLTQINQLLDNEKKRAEELRHLRKATETQFWWAGPIDGMNRDQLEFFKKALEALSKLVADHANSLVIQGAPIQTFPFFVGNGSSSNMPLDHQPNPPQTQMFPAQFFQNPMLQPHLFGLNNMRGGGGYGPSGFF