AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene93809

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93809.t1 MTR_1g105860 90.943 265 24 0 1 265 18 282 0.0 508
MS.gene93809.t1 MTR_1g105860 90.943 265 24 0 1 265 1 265 0.0 507
MS.gene93809.t1 MTR_1g105855 80.657 274 43 2 1 265 18 290 8.54e-161 448
MS.gene93809.t1 MTR_1g105885 72.266 256 65 4 1 255 1 251 6.26e-133 376
MS.gene93809.t1 MTR_1g105850 62.343 239 90 0 20 258 23 261 3.81e-108 315
MS.gene93809.t1 MTR_1g021638 61.753 251 91 3 10 255 3 253 7.76e-106 309
MS.gene93809.t1 MTR_1g021632 56.923 260 107 3 10 264 3 262 2.00e-96 296
MS.gene93809.t1 MTR_1g021642 55.769 260 108 4 1 254 8 266 1.03e-92 287
MS.gene93809.t1 MTR_0341s0010 54.902 255 106 5 10 255 3 257 1.72e-91 273
MS.gene93809.t1 MTR_1g021610 54.435 248 109 2 14 258 10 256 2.19e-91 283
MS.gene93809.t1 MTR_1g021635 55.952 252 106 3 10 256 3 254 1.02e-90 282
MS.gene93809.t1 MTR_1g021630 54.902 255 106 5 10 255 3 257 1.26e-87 274
MS.gene93809.t1 MTR_1g105820 51.373 255 112 6 4 256 8 252 3.13e-79 252
MS.gene93809.t1 MTR_1g105755 48.235 255 121 5 2 256 6 249 6.97e-72 231
MS.gene93809.t1 MTR_5g068260 49.187 246 117 5 10 255 8 245 1.37e-69 226
MS.gene93809.t1 MTR_5g068250 51.364 220 103 3 40 259 39 254 2.51e-66 215
MS.gene93809.t1 MTR_1g105750 49.219 256 121 5 2 256 6 253 1.31e-63 210
MS.gene93809.t1 MTR_5g068190 46.063 254 114 7 10 254 8 247 5.36e-62 206
MS.gene93809.t1 MTR_1g105800 47.718 241 117 5 16 256 19 250 8.56e-61 203
MS.gene93809.t1 MTR_0341s0020 45.098 255 100 6 10 255 3 226 3.03e-59 199
MS.gene93809.t1 MTR_1g105840 40.873 252 140 4 11 262 4 246 2.02e-51 178
MS.gene93809.t1 MTR_5g065130 41.288 264 134 8 4 262 1 248 9.49e-51 176
MS.gene93809.t1 MTR_1g105710 42.791 215 108 8 43 248 33 241 1.19e-42 154
MS.gene93809.t1 MTR_1g105700 37.917 240 135 6 24 255 19 252 1.55e-41 151
MS.gene93809.t1 MTR_1g105830 36.905 252 132 8 12 263 35 259 3.24e-40 141
MS.gene93809.t1 MTR_1g104890 33.617 235 145 6 24 255 33 259 2.02e-34 126
MS.gene93809.t1 MTR_2g088980 30.769 247 161 6 4 248 1 239 2.62e-34 124
MS.gene93809.t1 MTR_1g104890 33.617 235 145 6 24 255 33 259 2.88e-33 125
MS.gene93809.t1 MTR_1g104890 33.617 235 145 6 24 255 33 259 1.18e-32 125
MS.gene93809.t1 MTR_1g104890 33.617 235 145 6 24 255 33 259 1.90e-32 125
MS.gene93809.t1 MTR_1g105640 34.842 221 127 6 44 255 41 253 5.87e-32 124
MS.gene93809.t1 MTR_1g105640 34.722 216 132 7 45 255 42 253 5.98e-32 124
MS.gene93809.t1 MTR_1g105640 34.562 217 133 7 44 255 41 253 6.76e-32 124
MS.gene93809.t1 MTR_5g068290 48.413 126 62 3 130 255 1 123 2.88e-31 119
MS.gene93809.t1 MTR_7g052020 29.839 248 165 5 9 256 1 239 2.52e-30 114
MS.gene93809.t1 MTR_6g463830 33.730 252 153 8 11 255 7 251 4.41e-30 119
MS.gene93809.t1 MTR_6g463830 34.184 196 113 8 68 254 301 489 1.12e-17 82.8
MS.gene93809.t1 MTR_6g055960 31.776 214 137 5 47 255 35 244 1.91e-28 114
MS.gene93809.t1 MTR_6g055960 30.864 243 142 11 23 254 256 483 3.48e-19 87.4
MS.gene93809.t1 MTR_6g463660 31.660 259 163 7 9 261 7 257 2.04e-28 113
MS.gene93809.t1 MTR_6g463660 28.992 238 150 10 21 254 268 490 1.42e-18 85.1
MS.gene93809.t1 MTR_6g057680 31.660 259 163 7 9 261 7 257 2.04e-28 113
MS.gene93809.t1 MTR_6g057680 28.992 238 150 10 21 254 268 490 1.42e-18 85.1
MS.gene93809.t1 MTR_5g005480 32.114 246 155 8 13 254 12 249 3.92e-28 113
MS.gene93809.t1 MTR_1g105655 32.735 223 139 7 40 258 42 257 5.46e-27 110
MS.gene93809.t1 MTR_8g028065 29.818 275 160 8 9 263 7 268 1.97e-26 108
MS.gene93809.t1 MTR_8g028065 27.381 252 161 11 23 265 261 499 1.03e-17 83.2
MS.gene93809.t1 MTR_6g463700 30.120 249 165 6 9 254 10 252 2.70e-26 108
MS.gene93809.t1 MTR_6g057750 30.120 249 165 6 9 254 10 252 2.90e-26 108
MS.gene93809.t1 MTR_6g057750 30.058 173 108 7 89 255 337 502 8.53e-17 80.5
MS.gene93809.t1 MTR_6g463400 30.303 264 173 6 1 261 1 256 2.94e-26 107
MS.gene93809.t1 MTR_6g463400 35.714 168 101 6 89 254 328 490 4.81e-23 98.2
MS.gene93809.t1 MTR_0007s0020 31.203 266 155 10 4 255 1 252 8.92e-26 106
MS.gene93809.t1 MTR_0007s0020 32.990 194 117 7 74 259 309 497 8.43e-20 89.4
MS.gene93809.t1 MTR_1g105585 32.271 251 156 9 4 248 6 248 1.44e-25 105
MS.gene93809.t1 MTR_1g105650 29.870 231 152 5 28 255 31 254 1.56e-25 105
MS.gene93809.t1 MTR_2g088930 29.796 245 154 8 6 248 11 239 1.01e-24 99.4
MS.gene93809.t1 MTR_5g005530 33.684 190 121 3 65 254 63 247 1.52e-24 102
MS.gene93809.t1 MTR_5g005450 31.193 218 129 9 45 254 41 245 2.19e-24 102
MS.gene93809.t1 MTR_3g011890 28.390 236 146 8 44 265 29 255 2.47e-24 98.6
MS.gene93809.t1 MTR_5g005520 31.481 216 137 7 45 254 36 246 5.39e-24 101
MS.gene93809.t1 MTR_5g005520 31.481 216 137 7 45 254 41 251 7.33e-24 100
MS.gene93809.t1 MTR_1g105595 32.536 209 131 7 51 255 52 254 8.95e-24 100
MS.gene93809.t1 MTR_1g105595 32.536 209 131 7 51 255 52 254 9.18e-24 100
MS.gene93809.t1 MTR_6g053000 32.932 249 150 11 11 254 7 243 2.69e-23 99.4
MS.gene93809.t1 MTR_6g463710 31.797 217 139 5 44 255 40 252 3.01e-23 99.4
MS.gene93809.t1 MTR_6g463710 33.889 180 112 6 82 259 322 496 6.35e-18 83.6
MS.gene93809.t1 MTR_6g057770 31.797 217 139 5 44 255 40 252 3.24e-23 99.0
MS.gene93809.t1 MTR_6g057770 33.889 180 112 6 82 259 322 496 7.17e-18 83.6
MS.gene93809.t1 MTR_1g105725 27.626 257 162 10 9 254 24 267 3.30e-23 99.0
MS.gene93809.t1 MTR_1g105615 30.040 253 159 9 11 255 11 253 1.28e-22 97.1
MS.gene93809.t1 MTR_3g011910 32.389 247 147 8 9 249 22 254 2.17e-22 96.3
MS.gene93809.t1 MTR_3g011910 35.165 182 109 5 71 249 53 228 1.04e-21 94.7
MS.gene93809.t1 MTR_8g041650 27.027 259 178 7 9 264 8 258 4.87e-21 92.8
MS.gene93809.t1 MTR_8g041880 30.350 257 153 13 9 255 8 248 2.71e-20 90.5
MS.gene93809.t1 MTR_0074s0060 28.794 257 137 9 12 254 7 231 5.37e-20 89.7
MS.gene93809.t1 MTR_8g041910 27.407 270 167 12 9 265 13 266 1.55e-19 88.2
MS.gene93809.t1 MTR_8g041710 26.538 260 175 9 9 265 7 253 3.58e-19 87.0
MS.gene93809.t1 MTR_8g041870 28.796 191 122 7 80 265 77 258 1.31e-17 82.4
MS.gene93809.t1 MTR_3g079850 29.665 209 126 7 68 259 63 267 2.99e-17 81.3
MS.gene93809.t1 MTR_1g105600 34.254 181 107 7 82 254 333 509 3.60e-17 81.3
MS.gene93809.t1 MTR_1g105600 27.734 256 167 9 11 256 19 266 6.76e-13 68.6
MS.gene93809.t1 MTR_3g079850 29.665 209 126 7 68 259 63 267 3.80e-17 81.3
MS.gene93809.t1 MTR_8g041690 31.694 183 114 6 75 255 73 246 7.58e-17 80.5
MS.gene93809.t1 MTR_2g010730 25.941 239 165 7 25 262 27 254 3.98e-16 76.6
MS.gene93809.t1 MTR_2g010710 27.197 239 157 7 25 262 27 249 4.31e-16 76.3
MS.gene93809.t1 MTR_1g105715 53.448 58 27 0 65 122 4 61 6.67e-15 68.9
MS.gene93809.t1 MTR_0264s0030 32.984 191 95 9 81 254 70 244 8.36e-15 73.2
MS.gene93809.t1 MTR_6g057440 32.877 146 87 5 12 152 8 147 1.11e-12 64.7
MS.gene93809.t1 MTR_8g041890 23.938 259 187 6 9 265 8 258 2.36e-12 67.0
MS.gene93809.t1 MTR_8g041660 22.368 228 163 8 32 255 30 247 4.63e-12 66.2
MS.gene93809.t1 MTR_8g041660 22.368 228 163 8 32 255 30 247 5.67e-12 65.9
MS.gene93809.t1 MTR_2g010720 25.837 209 143 5 55 262 115 312 3.44e-11 62.8
MS.gene93809.t1 MTR_1g105720 52.727 55 26 0 65 119 9 63 7.94e-11 57.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene93809.t1 AT4G21410 36.719 256 152 6 13 265 13 261 1.16e-42 152
MS.gene93809.t1 AT4G21410 36.719 256 152 6 13 265 13 261 3.86e-42 153
MS.gene93809.t1 AT4G38830 38.117 223 126 7 39 256 32 247 5.00e-37 138
MS.gene93809.t1 AT4G05200 36.400 250 137 10 11 254 15 248 1.04e-36 137
MS.gene93809.t1 AT4G05200 36.400 250 137 10 11 254 33 266 1.20e-36 137
MS.gene93809.t1 AT4G21400 34.667 225 142 4 43 265 42 263 3.20e-36 135
MS.gene93809.t1 AT4G21400 34.667 225 142 4 43 265 42 263 4.05e-36 135
MS.gene93809.t1 AT4G21400 34.667 225 142 4 43 265 42 263 4.05e-36 135
MS.gene93809.t1 AT4G21400 34.667 225 142 4 43 265 42 263 4.05e-36 135
MS.gene93809.t1 AT4G21400 33.071 254 163 5 14 265 15 263 8.69e-36 135
MS.gene93809.t1 AT4G21400 33.071 254 163 5 14 265 15 263 9.55e-36 135
MS.gene93809.t1 AT3G22060 31.707 246 160 4 3 248 7 244 3.79e-35 127
MS.gene93809.t1 AT4G23170 38.426 216 118 8 45 254 39 245 3.20e-32 119
MS.gene93809.t1 AT4G21400 35.829 187 116 3 80 265 54 237 4.80e-32 124
MS.gene93809.t1 AT4G21230 35.897 234 125 9 41 263 37 256 2.19e-31 122
MS.gene93809.t1 AT4G00970 38.835 206 114 6 53 254 65 262 2.43e-31 122
MS.gene93809.t1 AT4G00970 38.835 206 114 6 53 254 65 262 3.93e-31 122
MS.gene93809.t1 AT4G23220 32.212 208 139 2 43 248 29 236 5.97e-31 121
MS.gene93809.t1 AT4G23160 37.220 223 127 7 41 258 632 846 2.24e-30 120
MS.gene93809.t1 AT4G23160 37.220 223 127 7 41 258 632 846 2.24e-30 120
MS.gene93809.t1 AT4G23180 36.752 234 132 9 29 258 36 257 2.24e-30 119
MS.gene93809.t1 AT4G23160 37.220 223 127 7 41 258 52 266 2.99e-30 119
MS.gene93809.t1 AT4G23180 36.752 234 132 9 29 258 36 257 4.91e-30 118
MS.gene93809.t1 AT4G23180 36.752 234 132 9 29 258 36 257 5.69e-30 118
MS.gene93809.t1 AT4G23280 37.383 214 122 6 44 254 38 242 5.83e-30 118
MS.gene93809.t1 AT4G23280 37.383 214 122 6 44 254 38 242 6.15e-30 118
MS.gene93809.t1 AT4G23280 37.383 214 122 6 44 254 38 242 6.60e-30 118
MS.gene93809.t1 AT4G23150 35.146 239 142 7 24 258 20 249 1.42e-29 117
MS.gene93809.t1 AT4G23130 35.577 208 123 7 51 255 46 245 4.12e-29 115
MS.gene93809.t1 AT4G23130 35.577 208 123 7 51 255 46 245 5.37e-29 115
MS.gene93809.t1 AT4G23130 35.577 208 123 7 51 255 46 245 5.73e-29 115
MS.gene93809.t1 AT2G31620 32.143 224 137 7 40 256 40 255 4.84e-28 108
MS.gene93809.t1 AT4G23200 29.524 210 142 2 45 248 30 239 6.78e-28 112
MS.gene93809.t1 AT4G23210 32.589 224 130 6 40 248 29 246 7.69e-28 112
MS.gene93809.t1 AT4G23210 32.589 224 130 6 40 248 29 246 8.98e-28 111
MS.gene93809.t1 AT4G23210 32.589 224 130 6 40 248 29 246 8.98e-28 111
MS.gene93809.t1 AT4G23210 32.589 224 130 6 40 248 29 246 1.08e-27 112
MS.gene93809.t1 AT4G23200 29.524 210 142 2 45 248 30 239 1.12e-27 112
MS.gene93809.t1 AT4G23210 32.589 224 130 6 40 248 29 246 1.17e-27 111
MS.gene93809.t1 AT4G23300 32.735 223 129 6 41 248 30 246 1.33e-27 111
MS.gene93809.t1 AT4G23140 35.176 199 115 6 65 258 61 250 6.68e-27 109
MS.gene93809.t1 AT4G23140 35.176 199 115 6 65 258 61 250 6.96e-27 109
MS.gene93809.t1 AT4G11521 28.889 225 147 3 32 248 18 237 4.27e-26 103
MS.gene93809.t1 AT4G11460 31.651 218 134 5 43 248 32 246 8.18e-26 106
MS.gene93809.t1 AT4G11460 31.651 218 134 5 43 248 32 246 9.02e-26 106
MS.gene93809.t1 AT3G45860 37.186 199 109 7 65 258 64 251 3.39e-25 104
MS.gene93809.t1 AT4G11530 26.506 249 163 4 9 248 5 242 5.63e-25 104
MS.gene93809.t1 AT4G20640 28.514 249 167 5 5 248 7 249 1.78e-24 99.0
MS.gene93809.t1 AT4G20580 28.514 249 167 5 5 248 7 249 1.78e-24 99.0
MS.gene93809.t1 AT4G20610 28.514 249 167 5 5 248 7 249 1.78e-24 99.0
MS.gene93809.t1 AT4G20630 28.514 249 167 5 5 248 7 249 1.78e-24 99.0
MS.gene93809.t1 AT4G20620 28.514 249 167 5 5 248 7 249 1.78e-24 99.0
MS.gene93809.t1 AT4G20590 28.514 249 167 5 5 248 7 249 1.78e-24 99.0
MS.gene93809.t1 AT4G20600 28.514 249 167 5 5 248 7 249 1.78e-24 99.0
MS.gene93809.t1 AT5G41290 29.555 247 155 8 12 249 7 243 1.92e-24 99.4
MS.gene93809.t1 AT4G20570 28.514 249 167 5 5 248 21 263 2.14e-24 99.0
MS.gene93809.t1 AT4G20560 28.514 249 167 5 5 248 21 263 2.14e-24 99.0
MS.gene93809.t1 AT4G20645 28.514 249 167 5 5 248 21 263 2.14e-24 99.0
MS.gene93809.t1 AT4G20550 28.514 249 167 5 5 248 21 263 2.14e-24 99.0
MS.gene93809.t1 AT4G20530 28.514 249 167 5 5 248 21 263 2.14e-24 99.0
MS.gene93809.t1 AT4G20540 28.514 249 167 5 5 248 21 263 2.14e-24 99.0
MS.gene93809.t1 AT4G23230 34.135 208 124 7 51 254 43 241 2.61e-24 102
MS.gene93809.t1 AT4G20670 28.514 249 167 5 5 248 7 249 2.68e-24 98.6
MS.gene93809.t1 AT4G23190 31.818 220 137 6 39 248 28 244 8.83e-24 100
MS.gene93809.t1 AT3G21960 27.490 251 171 6 3 248 11 255 1.07e-23 97.1
MS.gene93809.t1 AT4G23190 32.110 218 135 6 41 248 30 244 1.20e-23 100
MS.gene93809.t1 AT4G23270 32.540 252 152 10 7 254 3 240 1.33e-23 100
MS.gene93809.t1 AT4G23270 32.540 252 152 10 7 254 3 240 1.33e-23 100
MS.gene93809.t1 AT3G21990 27.711 249 169 5 5 248 7 249 1.58e-23 96.3
MS.gene93809.t1 AT4G23270 32.540 252 152 10 7 254 3 240 1.66e-23 99.8
MS.gene93809.t1 AT3G58310 26.556 241 171 4 9 248 14 249 5.56e-23 95.1
MS.gene93809.t1 AT1G61750 30.660 212 139 6 43 251 38 244 1.87e-22 95.1
MS.gene93809.t1 AT4G21410 40.580 138 78 3 130 265 1 136 2.37e-22 96.3
MS.gene93809.t1 AT4G23240 29.630 216 145 4 43 254 33 245 2.87e-22 96.3
MS.gene93809.t1 AT4G11490 29.954 217 144 3 38 248 27 241 7.34e-22 95.1
MS.gene93809.t1 AT4G23250 28.448 232 148 6 36 254 30 256 8.12e-22 95.1
MS.gene93809.t1 AT4G23250 28.448 232 148 6 36 254 30 256 8.35e-22 95.1
MS.gene93809.t1 AT4G23250 27.358 212 129 5 43 254 733 919 9.42e-14 71.2
MS.gene93809.t1 AT4G23250 28.448 232 148 6 36 254 30 256 9.27e-22 94.7
MS.gene93809.t1 AT3G21910 29.075 227 147 7 42 258 48 270 1.39e-21 91.7
MS.gene93809.t1 AT4G23310 33.005 203 123 6 50 248 157 350 3.94e-21 93.2
MS.gene93809.t1 AT4G23310 33.005 203 123 6 50 248 157 350 4.23e-21 92.8
MS.gene93809.t1 AT5G48540 29.435 248 158 7 13 256 9 243 1.08e-20 89.0
MS.gene93809.t1 AT4G21400 37.226 137 84 2 130 265 1 136 1.73e-20 90.9
MS.gene93809.t1 AT4G04500 31.731 208 127 5 61 255 49 254 2.48e-20 90.5
MS.gene93809.t1 AT4G04500 31.731 208 127 5 61 255 49 254 2.48e-20 90.5
MS.gene93809.t1 AT4G04500 31.731 208 127 5 61 255 49 254 2.49e-20 90.5
MS.gene93809.t1 AT4G23260 28.636 220 149 5 36 249 30 247 3.50e-20 90.1
MS.gene93809.t1 AT4G23260 28.636 220 149 5 36 249 30 247 3.95e-20 90.1
MS.gene93809.t1 AT1G63580 29.469 207 139 5 49 250 35 239 1.02e-19 86.3
MS.gene93809.t1 AT1G63600 28.054 221 149 4 35 250 39 254 1.31e-19 87.0
MS.gene93809.t1 AT1G63550 28.972 214 145 4 40 250 37 246 1.35e-19 87.0
MS.gene93809.t1 AT3G21920 29.796 245 142 11 32 258 40 272 1.84e-19 85.9
MS.gene93809.t1 AT3G21920 29.796 245 142 11 32 258 62 294 2.11e-19 85.9
MS.gene93809.t1 AT3G22040 27.907 258 159 9 4 248 7 250 4.23e-19 84.3
MS.gene93809.t1 AT3G21930 29.388 245 143 11 32 258 40 272 6.51e-19 84.3
MS.gene93809.t1 AT5G41300 26.531 245 171 4 6 247 7 245 1.10e-18 84.0
MS.gene93809.t1 AT1G63570 26.000 250 170 5 3 249 4 241 2.08e-18 83.2
MS.gene93809.t1 AT1G63570 26.000 250 170 5 3 249 4 241 2.08e-18 83.2
MS.gene93809.t1 AT1G63570 26.000 250 170 5 3 249 57 294 2.91e-18 83.2
MS.gene93809.t1 AT4G11460 31.609 174 104 5 87 248 1 171 3.85e-18 84.3
MS.gene93809.t1 AT5G41280 27.935 247 160 6 12 249 7 244 2.20e-17 80.1
MS.gene93809.t1 AT3G29050 27.372 274 175 9 4 258 10 278 2.73e-17 80.1
MS.gene93809.t1 AT4G11470 25.701 214 144 6 51 254 38 246 7.04e-17 80.5
MS.gene93809.t1 AT4G11470 25.701 214 144 6 51 254 43 251 7.06e-17 80.5
MS.gene93809.t1 AT4G11480 22.927 205 149 3 50 250 37 236 9.84e-17 79.7
MS.gene93809.t1 AT4G11480 22.927 205 149 3 50 250 37 236 1.07e-16 80.1
MS.gene93809.t1 AT3G21940 29.091 275 162 12 2 255 12 274 1.10e-16 78.2
MS.gene93809.t1 AT4G11480 22.927 205 149 3 50 250 37 236 1.18e-16 79.7
MS.gene93809.t1 AT4G11480 22.927 205 149 3 50 250 37 236 1.21e-16 79.7
MS.gene93809.t1 AT4G23190 31.361 169 104 5 89 248 1 166 1.71e-16 79.3
MS.gene93809.t1 AT4G23190 31.361 169 104 5 89 248 1 166 1.71e-16 79.3
MS.gene93809.t1 AT3G21940 32.778 180 102 6 92 255 3 179 1.98e-16 75.5
MS.gene93809.t1 AT3G22010 27.928 222 132 9 42 248 48 256 6.48e-16 75.9
MS.gene93809.t1 AT4G20680 26.693 251 169 8 8 248 15 260 8.46e-16 75.5
MS.gene93809.t1 AT3G22050 26.941 219 134 6 43 248 46 251 8.37e-15 72.4
MS.gene93809.t1 AT3G21900 26.923 208 143 5 41 248 45 243 1.02e-14 72.4
MS.gene93809.t1 AT4G04570 27.179 195 132 4 68 254 59 251 1.89e-14 73.2
MS.gene93809.t1 AT4G04570 27.179 195 132 4 68 254 59 251 2.04e-14 73.2
MS.gene93809.t1 AT3G22000 25.896 251 171 8 8 248 15 260 2.43e-14 71.6
MS.gene93809.t1 AT1G63590 24.762 210 151 3 46 250 39 246 7.03e-14 70.1
MS.gene93809.t1 AT4G23290 27.805 205 138 6 51 248 41 242 1.49e-13 70.5
MS.gene93809.t1 AT4G04510 28.283 198 119 6 71 254 62 250 1.66e-13 70.5
MS.gene93809.t1 AT4G04510 28.283 198 119 6 71 254 60 248 1.71e-13 70.5
MS.gene93809.t1 AT3G29040 27.626 257 162 11 3 248 5 248 1.93e-13 68.6
MS.gene93809.t1 AT1G70690 26.000 250 157 10 5 248 6 233 4.16e-13 68.2
MS.gene93809.t1 AT3G21970 26.786 224 144 7 39 248 40 257 8.23e-13 67.0
MS.gene93809.t1 AT4G04490 26.126 222 131 7 50 253 40 246 2.69e-12 67.0
MS.gene93809.t1 AT4G04540 23.111 225 158 6 43 254 32 254 3.13e-12 66.6
MS.gene93809.t1 AT4G04540 23.111 225 158 6 43 254 32 254 4.21e-12 66.2
MS.gene93809.t1 AT4G04540 23.111 225 158 6 43 254 32 254 4.36e-12 66.2
MS.gene93809.t1 AT4G04540 23.111 225 158 6 43 254 32 254 4.49e-12 66.2
MS.gene93809.t1 AT2G01660 24.206 252 153 11 10 249 6 231 7.59e-12 64.3
MS.gene93809.t1 AT2G01660 24.206 252 153 11 10 249 6 231 1.09e-11 63.9
MS.gene93809.t1 AT2G01660 24.206 252 153 11 10 249 6 231 1.14e-11 63.9
MS.gene93809.t1 AT3G21900 24.038 208 141 4 41 248 45 235 2.69e-11 62.4

Find 51 sgRNAs with CRISPR-Local

Find 59 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATTAGGCCTAAACGAAAT+TGG 0.229067 1.2:+78620513 MS.gene93809:CDS
TATTCAGACCGTTCTATATT+AGG 0.252445 1.2:+78620498 MS.gene93809:CDS
AGTTACCTCTATCGTTATTT+TGG 0.283454 1.2:-78620212 None:intergenic
GGCAGATCAATTTAATATCT+TGG 0.285791 1.2:+78620575 MS.gene93809:CDS
CGTTTACTTTGTCATTGTTT+TGG 0.299429 1.2:-78620335 None:intergenic
CTATCAACCTAAAGCAAAAC+TGG 0.325641 1.2:+78620860 MS.gene93809:CDS
TTTCAAGATGTTGTAGCAAT+AGG 0.335675 1.2:+78620778 MS.gene93809:CDS
TTGCTTTAGGTTGATAGAAT+TGG 0.343077 1.2:-78620854 None:intergenic
TTAAGAAGCAAGGCTATAAA+TGG 0.352413 1.2:+78620618 MS.gene93809:CDS
TTGGTCGTTGTTGTCTGCTT+GGG 0.365814 1.2:-78620169 None:intergenic
AAGCAGGTCCAATTTCGTTT+AGG 0.394951 1.2:-78620521 None:intergenic
AGTAGTAATCAAATAATATA+TGG 0.412356 1.2:+78620684 MS.gene93809:CDS
TTAGACCAAGCTGTAATTTG+AGG 0.412757 1.2:+78620817 MS.gene93809:CDS
TTTGGTCGTTGTTGTCTGCT+TGG 0.426348 1.2:-78620170 None:intergenic
GATAATTATGAGAAAGAGAA+AGG 0.435798 1.2:-78620130 None:intergenic
CAGTGTACACCTGACTTGTC+TGG 0.440744 1.2:+78620714 MS.gene93809:CDS
TGCTTGTGTGAGATTGAATC+TGG 0.442950 1.2:-78620418 None:intergenic
AATGACAAAGTAAACGTCAT+TGG 0.446473 1.2:+78620342 MS.gene93809:CDS
AGGCATTTGCGACAATCATC+AGG 0.449621 1.2:-78620387 None:intergenic
TCACATCGTAAGTATGTTGT+AGG 0.450527 1.2:+78620645 MS.gene93809:CDS
TGCGACCAAAATAACGATAG+AGG 0.460057 1.2:+78620207 MS.gene93809:CDS
CTTGGGGTTTAGATGTGAAA+AGG 0.460200 1.2:-78620152 None:intergenic
TATATTATTTGATTACTACT+AGG 0.467816 1.2:-78620681 None:intergenic
GATAGAGGTAACTACATAAC+CGG 0.483653 1.2:+78620222 MS.gene93809:CDS
TGAGAAAGAGAAAGGAGAGT+GGG 0.486566 1.2:-78620122 None:intergenic
AGAAGCAATTGGATGGTATG+AGG 0.513961 1.2:+78620455 MS.gene93809:CDS
TACAACTCAAACATTGACTA+CGG 0.520165 1.2:+78620291 MS.gene93809:CDS
GTTGAATGATTTAAGAAGCA+AGG 0.524724 1.2:+78620608 MS.gene93809:CDS
TCAAACCTCAAATTACAGCT+TGG 0.526400 1.2:-78620822 None:intergenic
AGATGTTGTAGCAATAGGAT+TGG 0.527777 1.2:+78620783 MS.gene93809:CDS
CACTGGGGACCAGACAAGTC+AGG 0.531473 1.2:-78620723 None:intergenic
GAGCAATTCTGAGGCTGTTG+TGG 0.536469 1.2:-78620254 None:intergenic
GATTGTCGCAAATGCCTAGT+TGG 0.540455 1.2:+78620393 MS.gene93809:CDS
ATGAGAAAGAGAAAGGAGAG+TGG 0.541993 1.2:-78620123 None:intergenic
GCTGTTGTGGTAGGTATCAC+CGG 0.542628 1.2:-78620241 None:intergenic
AAGTTCCATGCAAAATAAGC+AGG 0.549615 1.2:-78620537 None:intergenic
AATGTTTGAGTTGTAAGTGA+GGG 0.553708 1.2:-78620283 None:intergenic
CGTTTAGGCCTAATATAGAA+CGG 0.560797 1.2:-78620506 None:intergenic
GAACTTGAACAATGCAACAA+TGG 0.575248 1.2:+78620554 MS.gene93809:CDS
GATTGAATCTGGAACCAACT+AGG 0.575788 1.2:-78620407 None:intergenic
TGGTCGTTGTTGTCTGCTTG+GGG 0.575882 1.2:-78620168 None:intergenic
CAATGTTTGAGTTGTAAGTG+AGG 0.582947 1.2:-78620284 None:intergenic
AATTCTGAGGCTGTTGTGGT+AGG 0.584609 1.2:-78620250 None:intergenic
AAGCAAACAATCATCACACT+GGG 0.585932 1.2:-78620739 None:intergenic
GAAGCAAACAATCATCACAC+TGG 0.591047 1.2:-78620740 None:intergenic
TATGTTGTAGGAACAATGAC+GGG 0.594989 1.2:+78620657 MS.gene93809:CDS
GGTTTCTACAACACCAACAA+TGG 0.608559 1.2:+78620312 MS.gene93809:CDS
GTATGTTGTAGGAACAATGA+CGG 0.611472 1.2:+78620656 MS.gene93809:CDS
AACGTCATTGGAATATGTAG+AGG 0.614721 1.2:+78620354 MS.gene93809:CDS
GGGAGATTAGAGCAATTCTG+AGG 0.693843 1.2:-78620263 None:intergenic
AGCAAACAATCATCACACTG+GGG 0.800516 1.2:-78620738 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTAGTAATCAAATAATATA+TGG + chr1.2:78620684-78620703 MS.gene93809:CDS 15.0%
!! TATATTATTTGATTACTACT+AGG - chr1.2:78620684-78620703 None:intergenic 15.0%
! ATAAAAAAGAAGCAATTGGA+TGG + chr1.2:78620448-78620467 MS.gene93809:CDS 25.0%
! CCAAATAAAAAAGAAGCAAT+TGG + chr1.2:78620444-78620463 MS.gene93809:CDS 25.0%
! GATAATTATGAGAAAGAGAA+AGG - chr1.2:78620133-78620152 None:intergenic 25.0%
!!! CCAATTGCTTCTTTTTTATT+TGG - chr1.2:78620447-78620466 None:intergenic 25.0%
AATGACAAAGTAAACGTCAT+TGG + chr1.2:78620342-78620361 MS.gene93809:CDS 30.0%
ATATTAGGCCTAAACGAAAT+TGG + chr1.2:78620513-78620532 MS.gene93809:CDS 30.0%
GGCAGATCAATTTAATATCT+TGG + chr1.2:78620575-78620594 MS.gene93809:CDS 30.0%
GTTGAATGATTTAAGAAGCA+AGG + chr1.2:78620608-78620627 MS.gene93809:CDS 30.0%
TATTCAGACCGTTCTATATT+AGG + chr1.2:78620498-78620517 MS.gene93809:CDS 30.0%
TTAAGAAGCAAGGCTATAAA+TGG + chr1.2:78620618-78620637 MS.gene93809:CDS 30.0%
TTTCAAGATGTTGTAGCAAT+AGG + chr1.2:78620778-78620797 MS.gene93809:CDS 30.0%
! AGTTACCTCTATCGTTATTT+TGG - chr1.2:78620215-78620234 None:intergenic 30.0%
! CGTTTACTTTGTCATTGTTT+TGG - chr1.2:78620338-78620357 None:intergenic 30.0%
! TACAACTCAAACATTGACTA+CGG + chr1.2:78620291-78620310 MS.gene93809:CDS 30.0%
!! AATGTTTGAGTTGTAAGTGA+GGG - chr1.2:78620286-78620305 None:intergenic 30.0%
!! TTGCTTTAGGTTGATAGAAT+TGG - chr1.2:78620857-78620876 None:intergenic 30.0%
AACGTCATTGGAATATGTAG+AGG + chr1.2:78620354-78620373 MS.gene93809:CDS 35.0%
AAGCAAACAATCATCACACT+GGG - chr1.2:78620742-78620761 None:intergenic 35.0%
AAGTTCCATGCAAAATAAGC+AGG - chr1.2:78620540-78620559 None:intergenic 35.0%
AGATGTTGTAGCAATAGGAT+TGG + chr1.2:78620783-78620802 MS.gene93809:CDS 35.0%
CGTTTAGGCCTAATATAGAA+CGG - chr1.2:78620509-78620528 None:intergenic 35.0%
CTATCAACCTAAAGCAAAAC+TGG + chr1.2:78620860-78620879 MS.gene93809:CDS 35.0%
GAACTTGAACAATGCAACAA+TGG + chr1.2:78620554-78620573 MS.gene93809:CDS 35.0%
GATAGAGGTAACTACATAAC+CGG + chr1.2:78620222-78620241 MS.gene93809:CDS 35.0%
GTATGTTGTAGGAACAATGA+CGG + chr1.2:78620656-78620675 MS.gene93809:CDS 35.0%
TATGTTGTAGGAACAATGAC+GGG + chr1.2:78620657-78620676 MS.gene93809:CDS 35.0%
TCAAACCTCAAATTACAGCT+TGG - chr1.2:78620825-78620844 None:intergenic 35.0%
TCACATCGTAAGTATGTTGT+AGG + chr1.2:78620645-78620664 MS.gene93809:CDS 35.0%
TTAGACCAAGCTGTAATTTG+AGG + chr1.2:78620817-78620836 MS.gene93809:CDS 35.0%
!! CAATGTTTGAGTTGTAAGTG+AGG - chr1.2:78620287-78620306 None:intergenic 35.0%
!! CGCAAAAGTAGTGGAATTTT+TGG - chr1.2:78620191-78620210 None:intergenic 35.0%
!!! TATTTTGGTCGCAAAAGTAG+TGG - chr1.2:78620200-78620219 None:intergenic 35.0%
AAGCAGGTCCAATTTCGTTT+AGG - chr1.2:78620524-78620543 None:intergenic 40.0%
AGAAGCAATTGGATGGTATG+AGG + chr1.2:78620455-78620474 MS.gene93809:CDS 40.0%
AGCAAACAATCATCACACTG+GGG - chr1.2:78620741-78620760 None:intergenic 40.0%
ATGAGAAAGAGAAAGGAGAG+TGG - chr1.2:78620126-78620145 None:intergenic 40.0%
CTTGGGGTTTAGATGTGAAA+AGG - chr1.2:78620155-78620174 None:intergenic 40.0%
GAAGCAAACAATCATCACAC+TGG - chr1.2:78620743-78620762 None:intergenic 40.0%
GGTTTCTACAACACCAACAA+TGG + chr1.2:78620312-78620331 MS.gene93809:CDS 40.0%
TGAGAAAGAGAAAGGAGAGT+GGG - chr1.2:78620125-78620144 None:intergenic 40.0%
TGCGACCAAAATAACGATAG+AGG + chr1.2:78620207-78620226 MS.gene93809:CDS 40.0%
TGCTTGTGTGAGATTGAATC+TGG - chr1.2:78620421-78620440 None:intergenic 40.0%
! GATTGAATCTGGAACCAACT+AGG - chr1.2:78620410-78620429 None:intergenic 40.0%
! TGTGAAGCCAGTTTTGCTTT+AGG - chr1.2:78620870-78620889 None:intergenic 40.0%
!!! GTCATTGTTTTGGCCATTGT+TGG - chr1.2:78620328-78620347 None:intergenic 40.0%
!!! TTGGACCTGCTTATTTTGCA+TGG + chr1.2:78620532-78620551 MS.gene93809:CDS 40.0%
AGGCATTTGCGACAATCATC+AGG - chr1.2:78620390-78620409 None:intergenic 45.0%
GATTGTCGCAAATGCCTAGT+TGG + chr1.2:78620393-78620412 MS.gene93809:CDS 45.0%
GGGAGATTAGAGCAATTCTG+AGG - chr1.2:78620266-78620285 None:intergenic 45.0%
TTGGTCGTTGTTGTCTGCTT+GGG - chr1.2:78620172-78620191 None:intergenic 45.0%
TTTGGTCGTTGTTGTCTGCT+TGG - chr1.2:78620173-78620192 None:intergenic 45.0%
!! AATTCTGAGGCTGTTGTGGT+AGG - chr1.2:78620253-78620272 None:intergenic 45.0%
GCTGTTGTGGTAGGTATCAC+CGG - chr1.2:78620244-78620263 None:intergenic 50.0%
TGGTCGTTGTTGTCTGCTTG+GGG - chr1.2:78620171-78620190 None:intergenic 50.0%
! CAGTGTACACCTGACTTGTC+TGG + chr1.2:78620714-78620733 MS.gene93809:CDS 50.0%
!! GAGCAATTCTGAGGCTGTTG+TGG - chr1.2:78620257-78620276 None:intergenic 50.0%
CACTGGGGACCAGACAAGTC+AGG - chr1.2:78620726-78620745 None:intergenic 60.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 78620102 78620899 78620102 ID=MS.gene93809
chr1.2 mRNA 78620102 78620899 78620102 ID=MS.gene93809.t1;Parent=MS.gene93809
chr1.2 exon 78620102 78620899 78620102 ID=MS.gene93809.t1.exon1;Parent=MS.gene93809.t1
chr1.2 CDS 78620102 78620899 78620102 ID=cds.MS.gene93809.t1;Parent=MS.gene93809.t1
Gene Sequence

>MS.gene93809

ATGTCTATTCTCTCTTTAAGCCCACTCTCCTTTCTCTTTCTCATAATTATCCTTTTCACATCTAAACCCCAAGCAGACAACAACGACCAAAAATTCCACTACTTTTGCGACCAAAATAACGATAGAGGTAACTACATAACCGGTGATACCTACCACAACAGCCTCAGAATTGCTCTAATCTCCCTCACTTACAACTCAAACATTGACTACGGTTTCTACAACACCAACAATGGCCAAAACAATGACAAAGTAAACGTCATTGGAATATGTAGAGGAGACATTAATCCTGATGATTGTCGCAAATGCCTAGTTGGTTCCAGATTCAATCTCACACAAGCATGTCCAAATAAAAAAGAAGCAATTGGATGGTATGAGGATGAGAAATGCATGTTACGTTATTCAGACCGTTCTATATTAGGCCTAAACGAAATTGGACCTGCTTATTTTGCATGGAACTTGAACAATGCAACAATGGCAGATCAATTTAATATCTTGGTAAAACAACTGTTGAATGATTTAAGAAGCAAGGCTATAAATGGTGATTCACATCGTAAGTATGTTGTAGGAACAATGACGGGTCCTAGTAGTAATCAAATAATATATGGTCTTGTTCAGTGTACACCTGACTTGTCTGGTCCCCAGTGTGATGATTGTTTGCTTCAATCTATTGCTGAAGTTTCAAGATGTTGTAGCAATAGGATTGGTGCTAGAATTGTTAGACCAAGCTGTAATTTGAGGTTTGAAACTTCATACCAATTCTATCAACCTAAAGCAAAACTGGCTTCACATCTCCCATGA
Protein sequence

>MS.gene93809.t1

MSILSLSPLSFLFLIIILFTSKPQADNNDQKFHYFCDQNNDRGNYITGDTYHNSLRIALISLTYNSNIDYGFYNTNNGQNNDKVNVIGICRGDINPDDCRKCLVGSRFNLTQACPNKKEAIGWYEDEKCMLRYSDRSILGLNEIGPAYFAWNLNNATMADQFNILVKQLLNDLRSKAINGDSHRKYVVGTMTGPSSNQIIYGLVQCTPDLSGPQCDDCLLQSIAEVSRCCSNRIGARIVRPSCNLRFETSYQFYQPKAKLASHLP