Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051750.t1 | XP_013448523.1 | 95.1 | 508 | 15 | 2 | 5 | 508 | 9 | 510 | 1.50E-250 | 875.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051750.t1 | Q9SRT2 | 45.8 | 493 | 180 | 13 | 10 | 494 | 21 | 434 | 2.2e-85 | 317.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene051750.t1 | A0A072U9Q4 | 95.1 | 508 | 15 | 2 | 5 | 508 | 9 | 510 | 1.1e-250 | 875.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051749 | MS.gene051750 | 0.885237 | 9.67E-72 | -1.69E-46 |
| MS.gene051750 | MS.gene058158 | 0.802361 | 5.82E-49 | -1.69E-46 |
| MS.gene051750 | MS.gene069869 | 0.824367 | 8.39E-54 | -1.69E-46 |
| MS.gene051750 | MS.gene26624 | 0.824117 | 9.60E-54 | -1.69E-46 |
| MS.gene051750 | MS.gene26705 | 0.825107 | 5.61E-54 | -1.69E-46 |
| MS.gene051750 | MS.gene29002 | -0.801054 | 1.08E-48 | -1.69E-46 |
| MS.gene051750 | MS.gene29968 | -0.801968 | 7.01E-49 | -1.69E-46 |
| MS.gene051750 | MS.gene32771 | 0.802064 | 6.70E-49 | -1.69E-46 |
| MS.gene051750 | MS.gene32895 | 0.818757 | 1.66E-52 | -1.69E-46 |
| MS.gene051750 | MS.gene35922 | 0.839923 | 1.19E-57 | -1.69E-46 |
| MS.gene051750 | MS.gene35923 | 0.811042 | 8.53E-51 | -1.69E-46 |
| MS.gene051750 | MS.gene38375 | 0.824288 | 8.75E-54 | -1.69E-46 |
| MS.gene051750 | MS.gene41354 | 0.808644 | 2.80E-50 | -1.69E-46 |
| MS.gene051750 | MS.gene42621 | 0.811819 | 5.79E-51 | -1.69E-46 |
| MS.gene051750 | MS.gene42687 | 0.811105 | 8.27E-51 | -1.69E-46 |
| MS.gene051750 | MS.gene62631 | 0.808559 | 2.92E-50 | -1.69E-46 |
| MS.gene051750 | MS.gene69343 | -0.816862 | 4.44E-52 | -1.69E-46 |
| MS.gene051750 | MS.gene76534 | 0.822406 | 2.41E-53 | -1.69E-46 |
| MS.gene051750 | MS.gene85150 | 0.820427 | 6.90E-53 | -1.69E-46 |
| MS.gene051750 | MS.gene93809 | 0.805882 | 1.08E-49 | -1.69E-46 |
| MS.gene051750 | MS.gene97788 | 0.805893 | 1.07E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 92 sgRNAs with CRISPR-Local
Find 162 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGAATTGATTGGTAAATT+AGG | 0.220575 | 7.3:-50540317 | MS.gene051750:CDS |
| GCAGTTCCTATCTATGAAAT+TGG | 0.223353 | 7.3:-50538716 | MS.gene051750:intron |
| TCAAAGATCTACTCCATTAT+TGG | 0.223521 | 7.3:-50540042 | MS.gene051750:CDS |
| TCCTCAGCACCATCCTATTA+TGG | 0.234641 | 7.3:-50538483 | MS.gene051750:CDS |
| TCTACTCCATTATTGGAAAA+TGG | 0.261666 | 7.3:-50540035 | MS.gene051750:CDS |
| GTTTCAATCAAATAATTCTT+TGG | 0.281320 | 7.3:-50538529 | MS.gene051750:CDS |
| GAGGAATCTAATGGGAATAT+TGG | 0.295383 | 7.3:+50538501 | None:intergenic |
| ATAAGTGCATGCCAAGGTTT+TGG | 0.306516 | 7.3:+50538367 | None:intergenic |
| ACTAGAAGTTGAAGTTTCTT+TGG | 0.309086 | 7.3:+50539812 | None:intergenic |
| ACAATTGTTCAGATGGGATT+TGG | 0.313660 | 7.3:-50537817 | MS.gene051750:CDS |
| ATTCACAATAATATTTCTAA+TGG | 0.321191 | 7.3:-50538435 | MS.gene051750:CDS |
| TTCTGCAACAGTTGAATTCA+TGG | 0.325717 | 7.3:+50540160 | None:intergenic |
| GAATCAACAATCTCTGAAAA+TGG | 0.326758 | 7.3:-50539894 | MS.gene051750:CDS |
| ATTGTTGAGATGTTCAATTT+TGG | 0.329946 | 7.3:+50540185 | None:intergenic |
| GAAATATTATTGTGAATTGC+TGG | 0.332246 | 7.3:+50538441 | None:intergenic |
| TTACTCTTTCTGCAAGACTA+TGG | 0.332464 | 7.3:+50539456 | None:intergenic |
| CTTCTCCTTATGTGAATTCA+AGG | 0.338861 | 7.3:-50539863 | MS.gene051750:CDS |
| TCATCTTCAGAGAATGTTAA+TGG | 0.340270 | 7.3:+50537847 | None:intergenic |
| TCTTGTCCCTGGTTGCAATA+AGG | 0.355254 | 7.3:-50539133 | MS.gene051750:intron |
| TGGCATAAACCACCATCTAA+TGG | 0.361230 | 7.3:+50538387 | None:intergenic |
| GCTGCAAAATTCTCTTGCTT+TGG | 0.361360 | 7.3:-50540107 | MS.gene051750:CDS |
| GAATTGTTCTACTCAATTGC+AGG | 0.367833 | 7.3:-50539946 | MS.gene051750:CDS |
| GGCATAAACCACCATCTAAT+GGG | 0.369801 | 7.3:+50538388 | None:intergenic |
| CAGTGGCCAATTTCATAGAT+AGG | 0.382519 | 7.3:+50538710 | None:intergenic |
| CCTCAGCACCATCCTATTAT+GGG | 0.394260 | 7.3:-50538482 | MS.gene051750:CDS |
| AGGAATCTAATGGGAATATT+GGG | 0.404291 | 7.3:+50538502 | None:intergenic |
| GATCCAAGTTCTTTCAATGA+TGG | 0.405954 | 7.3:+50539987 | None:intergenic |
| AATTCTCTTGCTTTGGAAGT+AGG | 0.408436 | 7.3:-50540100 | MS.gene051750:CDS |
| TTCAAATTATGAAATTGTAT+TGG | 0.408593 | 7.3:+50537772 | None:intergenic |
| CTGGTGTTGTTGCCCATAAT+AGG | 0.412733 | 7.3:+50538470 | None:intergenic |
| GATGGTGCTGAGGAATCTAA+TGG | 0.422338 | 7.3:+50538492 | None:intergenic |
| GTTGTTGACTTATCCCATAT+TGG | 0.422874 | 7.3:+50540437 | None:intergenic |
| GCAGAATTCTCAACTGATCC+TGG | 0.423123 | 7.3:-50540143 | MS.gene051750:CDS |
| TATTATTCCTTCTAGGTCAC+TGG | 0.424071 | 7.3:-50539035 | MS.gene051750:intron |
| TGATTCAGCACTTAGTTCAA+TGG | 0.424451 | 7.3:-50540393 | MS.gene051750:CDS |
| CTAAGTGGATTTAATGAAGC+TGG | 0.440757 | 7.3:-50538339 | MS.gene051750:CDS |
| TTTGTCATCAGAGAATTGAT+TGG | 0.446145 | 7.3:-50540326 | MS.gene051750:CDS |
| ATTGGTAAATTAGGAAACAT+TGG | 0.447086 | 7.3:-50540308 | MS.gene051750:CDS |
| AACTCAGTGGACCCATTAGA+TGG | 0.450062 | 7.3:-50538399 | MS.gene051750:CDS |
| ATGTAATCCTTTGGTGCCTC+AGG | 0.463142 | 7.3:+50539515 | None:intergenic |
| AGTCCATCATTGAAAGAACT+TGG | 0.466629 | 7.3:-50539990 | MS.gene051750:CDS |
| AAAATTGTCATTTGACATGT+TGG | 0.469622 | 7.3:+50540346 | None:intergenic |
| CTGACATGAATGTAATCCTT+TGG | 0.473631 | 7.3:+50539506 | None:intergenic |
| TAATGGGTCCACTGAGTTGT+GGG | 0.475871 | 7.3:+50538404 | None:intergenic |
| AAATATTATTGTGAATTGCT+GGG | 0.490799 | 7.3:+50538442 | None:intergenic |
| AAGCAGAGGAAGAATCAAAA+GGG | 0.491073 | 7.3:-50539595 | MS.gene051750:CDS |
| CTAATGGGTCCACTGAGTTG+TGG | 0.497924 | 7.3:+50538403 | None:intergenic |
| CCTCAACACAATTGTTCAGA+TGG | 0.508498 | 7.3:-50537824 | MS.gene051750:CDS |
| CTTGAATTCACATAAGGAGA+AGG | 0.513147 | 7.3:+50539864 | None:intergenic |
| GCAGCTCTTTCTGCAAAACC+AGG | 0.515215 | 7.3:+50540125 | None:intergenic |
| TTTGGAAGTAGGAGTTTCAA+TGG | 0.516264 | 7.3:-50540089 | MS.gene051750:CDS |
| AAAGCAGAGGAAGAATCAAA+AGG | 0.521509 | 7.3:-50539596 | MS.gene051750:CDS |
| AAAAGAAAAGTTTCTTCCAA+AGG | 0.532200 | 7.3:-50539840 | MS.gene051750:CDS |
| TGATGAGATCTCACAAACAT+TGG | 0.547828 | 7.3:-50540276 | MS.gene051750:CDS |
| ATACAATTTCATAATTTGAA+CGG | 0.549604 | 7.3:-50537769 | None:intergenic |
| AACCATCTTCAATGCCTACA+TGG | 0.550038 | 7.3:-50540505 | MS.gene051750:CDS |
| CTTCTACAAGATCTTGTCCC+TGG | 0.550938 | 7.3:-50539144 | MS.gene051750:CDS |
| ATTTAATGAAGCTGGCTCAC+AGG | 0.551026 | 7.3:-50538331 | MS.gene051750:intron |
| CTCAATACTAAAATCCACCT+TGG | 0.554681 | 7.3:+50538681 | None:intergenic |
| AAGCGTATGAAAACAAATGA+AGG | 0.556302 | 7.3:-50539644 | MS.gene051750:CDS |
| ATGGTGCTGAGGAATCTAAT+GGG | 0.559576 | 7.3:+50538493 | None:intergenic |
| GGAGGGAGAAAATCAGTGAA+AGG | 0.560766 | 7.3:-50539173 | MS.gene051750:CDS |
| GATGAAAGTGATTGCCATGT+AGG | 0.566700 | 7.3:+50540491 | None:intergenic |
| TAATCCTTTGGTGCCTCAGG+AGG | 0.569593 | 7.3:+50539518 | None:intergenic |
| TACCAACCTTATTGCAACCA+GGG | 0.572746 | 7.3:+50539127 | None:intergenic |
| ATCATTGCAGCGTCAAGTTG+AGG | 0.580066 | 7.3:-50538973 | MS.gene051750:intron |
| AAAACCTCCTGAGGCACCAA+AGG | 0.580225 | 7.3:-50539522 | MS.gene051750:CDS |
| ATGCACTTATCTTCACTAAG+TGG | 0.581033 | 7.3:-50538354 | MS.gene051750:CDS |
| CTCAACACAATTGTTCAGAT+GGG | 0.581106 | 7.3:-50537823 | MS.gene051750:CDS |
| GGTGGTTTATGCCAAAACCT+TGG | 0.587041 | 7.3:-50538378 | MS.gene051750:CDS |
| TGCCATGTAGGCATTGAAGA+TGG | 0.593613 | 7.3:+50540503 | None:intergenic |
| AACTTCTAGTAACCCTGCAA+TGG | 0.607773 | 7.3:-50539799 | MS.gene051750:intron |
| TTACCAACCTTATTGCAACC+AGG | 0.614090 | 7.3:+50539126 | None:intergenic |
| ATGTTGGAATTTGAAGCTGC+AGG | 0.621377 | 7.3:+50540362 | None:intergenic |
| CCATCTGAACAATTGTGTTG+AGG | 0.622085 | 7.3:+50537824 | None:intergenic |
| GGTACAAATAGTAATAATGG+AGG | 0.627017 | 7.3:-50539572 | MS.gene051750:CDS |
| AAAATTGAACATCTCAACAA+TGG | 0.629044 | 7.3:-50540183 | MS.gene051750:CDS |
| TGATCAAAATGATGTTGAGG+TGG | 0.637803 | 7.3:+50540533 | None:intergenic |
| TGTTGTTGCCCATAATAGGA+TGG | 0.639120 | 7.3:+50538474 | None:intergenic |
| GATTGATCAAAATGATGTTG+AGG | 0.642732 | 7.3:+50540530 | None:intergenic |
| GTGAAGATAAGTGCATGCCA+AGG | 0.643919 | 7.3:+50538361 | None:intergenic |
| AAATGGTAAAGTAAAAGCAG+AGG | 0.646618 | 7.3:-50539609 | MS.gene051750:CDS |
| ATTCATGTCAGAGCAAGAAG+AGG | 0.647303 | 7.3:-50539494 | MS.gene051750:CDS |
| AGCAGAGGAAGAATCAAAAG+GGG | 0.649630 | 7.3:-50539594 | MS.gene051750:CDS |
| GAGCAATTCAAAACCTCCTG+AGG | 0.656462 | 7.3:-50539531 | MS.gene051750:CDS |
| CCCATAATAGGATGGTGCTG+AGG | 0.665748 | 7.3:+50538482 | None:intergenic |
| AACTGTGACCCACAACTCAG+TGG | 0.673850 | 7.3:-50538412 | MS.gene051750:CDS |
| TCAGTGGACCCATTAGATGG+TGG | 0.680214 | 7.3:-50538396 | MS.gene051750:CDS |
| ATCCACCTTGGTGTTAACAG+TGG | 0.694539 | 7.3:+50538693 | None:intergenic |
| GCAGAGGAAGAATCAAAAGG+GGG | 0.717660 | 7.3:-50539593 | MS.gene051750:CDS |
| ATTGGCCACTGTTAACACCA+AGG | 0.721123 | 7.3:-50538698 | MS.gene051750:CDS |
| GGCCACTGTTAACACCAAGG+TGG | 0.728183 | 7.3:-50538695 | MS.gene051750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAGTTAATTGTATTAT+AGG | - | chr7.3:50540021-50540040 | MS.gene051750:CDS | 10.0% |
| !! | ATAAAGTTAATTGTATTATA+GGG | - | chr7.3:50540022-50540041 | MS.gene051750:CDS | 10.0% |
| !!! | ATTTTTTATAAATGATTAGA+TGG | + | chr7.3:50540145-50540164 | None:intergenic | 10.0% |
| !! | AAATGACTAATTTAATTAAG+AGG | + | chr7.3:50538572-50538591 | None:intergenic | 15.0% |
| !! | AATGACTAATTTAATTAAGA+GGG | + | chr7.3:50538571-50538590 | None:intergenic | 15.0% |
| !! | GGTAATAATTAGATAAATTA+AGG | - | chr7.3:50539199-50539218 | MS.gene051750:intron | 15.0% |
| !! | TGTTTATATTATAAATTGGA+GGG | - | chr7.3:50539481-50539500 | MS.gene051750:CDS | 15.0% |
| !! | TTATAATAATTCATACGATT+TGG | + | chr7.3:50540168-50540187 | None:intergenic | 15.0% |
| !! | TTCAAATTATGAAATTGTAT+TGG | + | chr7.3:50540538-50540557 | None:intergenic | 15.0% |
| !! | TTGTTTATATTATAAATTGG+AGG | - | chr7.3:50539480-50539499 | MS.gene051750:CDS | 15.0% |
| !!! | ACATTTTAACTTTACAAATT+AGG | + | chr7.3:50540119-50540138 | None:intergenic | 15.0% |
| !!! | ATTCACAATAATATTTCTAA+TGG | - | chr7.3:50539872-50539891 | MS.gene051750:CDS | 15.0% |
| !!! | TAATTTGTAAAGTTAAAATG+TGG | - | chr7.3:50540118-50540137 | MS.gene051750:CDS | 15.0% |
| !!! | TGTAAACTAATTTTTGTTAT+AGG | - | chr7.3:50539108-50539127 | MS.gene051750:intron | 15.0% |
| !! | AAATATTATTGTGAATTGCT+GGG | + | chr7.3:50539868-50539887 | None:intergenic | 20.0% |
| !! | GTTTCAATCAAATAATTCTT+TGG | - | chr7.3:50539778-50539797 | MS.gene051750:intron | 20.0% |
| !! | TACTGAAAAATGAAAATCAT+TGG | + | chr7.3:50540439-50540458 | None:intergenic | 20.0% |
| !! | TATGAATTATTATTCCTTCT+AGG | - | chr7.3:50539265-50539284 | MS.gene051750:intron | 20.0% |
| !! | TTCATATTCTAAATCCAAAA+GGG | - | chr7.3:50538590-50538609 | MS.gene051750:intron | 20.0% |
| !! | TTTCATATTCTAAATCCAAA+AGG | - | chr7.3:50538589-50538608 | MS.gene051750:intron | 20.0% |
| !!! | ACTAATTTTTGTTATAGGTT+AGG | - | chr7.3:50539113-50539132 | MS.gene051750:intron | 20.0% |
| !!! | CATTTTTGTTTTTGCAATAT+AGG | - | chr7.3:50538614-50538633 | MS.gene051750:intron | 20.0% |
| !!! | GCATACATAACAATTTTATT+TGG | - | chr7.3:50539392-50539411 | MS.gene051750:intron | 20.0% |
| !!! | TCAATTTGTTGACTTTTTTT+TGG | - | chr7.3:50539741-50539760 | MS.gene051750:intron | 20.0% |
| ! | AAAAGAAAAGTTTCTTCCAA+AGG | - | chr7.3:50538467-50538486 | MS.gene051750:CDS | 25.0% |
| ! | AAAATTGAACATCTCAACAA+TGG | - | chr7.3:50538124-50538143 | MS.gene051750:intron | 25.0% |
| ! | AGAGAATTGATTGGTAAATT+AGG | - | chr7.3:50537990-50538009 | MS.gene051750:intron | 25.0% |
| ! | ATGATTGTTAGTGTCAATTA+TGG | + | chr7.3:50538900-50538919 | None:intergenic | 25.0% |
| ! | ATTGGTAAATTAGGAAACAT+TGG | - | chr7.3:50537999-50538018 | MS.gene051750:intron | 25.0% |
| ! | CTAGACCTAAAATATAAAGT+CGG | + | chr7.3:50540263-50540282 | None:intergenic | 25.0% |
| ! | CTCAAAAGATGTAAGTTTAA+GGG | - | chr7.3:50539657-50539676 | MS.gene051750:CDS | 25.0% |
| ! | GAAATATTATTGTGAATTGC+TGG | + | chr7.3:50539869-50539888 | None:intergenic | 25.0% |
| ! | GAAGGTGAAAAAATTGAAAA+TGG | - | chr7.3:50538681-50538700 | MS.gene051750:CDS | 25.0% |
| ! | TAGTTTATAAAATTCGAACG+TGG | - | chr7.3:50540280-50540299 | MS.gene051750:CDS | 25.0% |
| ! | TCTCAAAAGATGTAAGTTTA+AGG | - | chr7.3:50539656-50539675 | MS.gene051750:CDS | 25.0% |
| ! | TTCAAAAATTTATCAACCTC+AGG | - | chr7.3:50539439-50539458 | MS.gene051750:intron | 25.0% |
| !! | AAAAACAAAAATGACCCTTT+TGG | + | chr7.3:50538607-50538626 | None:intergenic | 25.0% |
| !! | AAAATTGTCATTTGACATGT+TGG | + | chr7.3:50537964-50537983 | None:intergenic | 25.0% |
| !! | ACATTCCGACTTTATATTTT+AGG | - | chr7.3:50540255-50540274 | MS.gene051750:CDS | 25.0% |
| !! | AGGTCTAAAATACAAAAGTT+AGG | + | chr7.3:50540099-50540118 | None:intergenic | 25.0% |
| !! | AGTTTTCCATTTTCCAATAA+TGG | + | chr7.3:50538281-50538300 | None:intergenic | 25.0% |
| !! | ATTGTTGAGATGTTCAATTT+TGG | + | chr7.3:50538125-50538144 | None:intergenic | 25.0% |
| !! | TCGTATTATAGCATATTTTG+AGG | + | chr7.3:50539013-50539032 | None:intergenic | 25.0% |
| !!! | AATTTTTAACTTACCATTGC+AGG | + | chr7.3:50538524-50538543 | None:intergenic | 25.0% |
| !!! | AATTTTTGTTATAGGTTAGG+AGG | - | chr7.3:50539116-50539135 | MS.gene051750:intron | 25.0% |
| !!! | ATTGTTTTTACACACCAATA+TGG | - | chr7.3:50537856-50537875 | MS.gene051750:intron | 25.0% |
| !!! | ATTTTCCAGTTATTTTGAGA+CGG | + | chr7.3:50540307-50540326 | None:intergenic | 25.0% |
| !!! | ATTTTTAACTTACCATTGCA+GGG | + | chr7.3:50538523-50538542 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTATAGGTTAGGA+GGG | - | chr7.3:50539117-50539136 | MS.gene051750:intron | 25.0% |
| !!! | TTGTTTTTACACACCAATAT+GGG | - | chr7.3:50537857-50537876 | MS.gene051750:intron | 25.0% |
| AAATGGTAAAGTAAAAGCAG+AGG | - | chr7.3:50538698-50538717 | MS.gene051750:CDS | 30.0% | |
| AACTGTCAAATCAAGATTAG+TGG | - | chr7.3:50540229-50540248 | MS.gene051750:CDS | 30.0% | |
| AAGCGTATGAAAACAAATGA+AGG | - | chr7.3:50538663-50538682 | MS.gene051750:CDS | 30.0% | |
| AAGTCATGTAATAATTCCTG+AGG | + | chr7.3:50539458-50539477 | None:intergenic | 30.0% | |
| ACTAGAAGTTGAAGTTTCTT+TGG | + | chr7.3:50538498-50538517 | None:intergenic | 30.0% | |
| AGGAATCTAATGGGAATATT+GGG | + | chr7.3:50539808-50539827 | None:intergenic | 30.0% | |
| ATGATGGCAATATACATGTT+AGG | - | chr7.3:50539067-50539086 | MS.gene051750:intron | 30.0% | |
| CACATATTGTGGCAATATAA+AGG | + | chr7.3:50538950-50538969 | None:intergenic | 30.0% | |
| GATTGATCAAAATGATGTTG+AGG | + | chr7.3:50537780-50537799 | None:intergenic | 30.0% | |
| GGTACAAATAGTAATAATGG+AGG | - | chr7.3:50538735-50538754 | MS.gene051750:intron | 30.0% | |
| TAACATGTATATTGCCATCA+TGG | + | chr7.3:50539068-50539087 | None:intergenic | 30.0% | |
| TCAAAGATCTACTCCATTAT+TGG | - | chr7.3:50538265-50538284 | MS.gene051750:intron | 30.0% | |
| TCATCTTCAGAGAATGTTAA+TGG | + | chr7.3:50540463-50540482 | None:intergenic | 30.0% | |
| TCTACTCCATTATTGGAAAA+TGG | - | chr7.3:50538272-50538291 | MS.gene051750:intron | 30.0% | |
| TTGGTGTGTAAAAACAATCT+TGG | + | chr7.3:50537854-50537873 | None:intergenic | 30.0% | |
| TTTGTCATCAGAGAATTGAT+TGG | - | chr7.3:50537981-50538000 | MS.gene051750:intron | 30.0% | |
| ! | AAAAGTGCATGAAACTAGAA+TGG | + | chr7.3:50540394-50540413 | None:intergenic | 30.0% |
| ! | ACAGGTAATCTATTTCTTCT+AGG | - | chr7.3:50539994-50540013 | MS.gene051750:CDS | 30.0% |
| ! | ACCACAATTTAAAACCATGA+TGG | - | chr7.3:50539051-50539070 | MS.gene051750:intron | 30.0% |
| ! | CTTTTCCTTGAATTCACATA+AGG | + | chr7.3:50538452-50538471 | None:intergenic | 30.0% |
| ! | GAATCAACAATCTCTGAAAA+TGG | - | chr7.3:50538413-50538432 | MS.gene051750:CDS | 30.0% |
| !! | AATTTTGGAGGAGAATTCAA+AGG | + | chr7.3:50538110-50538129 | None:intergenic | 30.0% |
| !! | ATTTTGGAGGAGAATTCAAA+GGG | + | chr7.3:50538109-50538128 | None:intergenic | 30.0% |
| !!! | AGTTTCTTTGGTTTTTCCTT+TGG | + | chr7.3:50538486-50538505 | None:intergenic | 30.0% |
| AAAGCAGAGGAAGAATCAAA+AGG | - | chr7.3:50538711-50538730 | MS.gene051750:CDS | 35.0% | |
| AAGCAGAGGAAGAATCAAAA+GGG | - | chr7.3:50538712-50538731 | MS.gene051750:CDS | 35.0% | |
| AATCTCTGATCTTGATCAGA+CGG | + | chr7.3:50540071-50540090 | None:intergenic | 35.0% | |
| ACAATTGTTCAGATGGGATT+TGG | - | chr7.3:50540490-50540509 | MS.gene051750:CDS | 35.0% | |
| AGTCCATCATTGAAAGAACT+TGG | - | chr7.3:50538317-50538336 | MS.gene051750:intron | 35.0% | |
| ATGCACTTATCTTCACTAAG+TGG | - | chr7.3:50539953-50539972 | MS.gene051750:CDS | 35.0% | |
| CTCAACACAATTGTTCAGAT+GGG | - | chr7.3:50540484-50540503 | MS.gene051750:CDS | 35.0% | |
| CTCAATACTAAAATCCACCT+TGG | + | chr7.3:50539629-50539648 | None:intergenic | 35.0% | |
| CTGACATGAATGTAATCCTT+TGG | + | chr7.3:50538804-50538823 | None:intergenic | 35.0% | |
| CTTCTCCTTATGTGAATTCA+AGG | - | chr7.3:50538444-50538463 | MS.gene051750:CDS | 35.0% | |
| CTTGAATTCACATAAGGAGA+AGG | + | chr7.3:50538446-50538465 | None:intergenic | 35.0% | |
| GAATTGTTCTACTCAATTGC+AGG | - | chr7.3:50538361-50538380 | MS.gene051750:CDS | 35.0% | |
| GAGGAATCTAATGGGAATAT+TGG | + | chr7.3:50539809-50539828 | None:intergenic | 35.0% | |
| GATCCAAGTTCTTTCAATGA+TGG | + | chr7.3:50538323-50538342 | None:intergenic | 35.0% | |
| GCAGTTCCTATCTATGAAAT+TGG | - | chr7.3:50539591-50539610 | MS.gene051750:CDS | 35.0% | |
| TATTATTCCTTCTAGGTCAC+TGG | - | chr7.3:50539272-50539291 | MS.gene051750:intron | 35.0% | |
| TGATCAAAATGATGTTGAGG+TGG | + | chr7.3:50537777-50537796 | None:intergenic | 35.0% | |
| TGATGAGATCTCACAAACAT+TGG | - | chr7.3:50538031-50538050 | MS.gene051750:intron | 35.0% | |
| TGATTCAGCACTTAGTTCAA+TGG | - | chr7.3:50537914-50537933 | MS.gene051750:intron | 35.0% | |
| TGCGAAAAAAATTGTTGTCG+CGG | - | chr7.3:50538984-50539003 | MS.gene051750:CDS | 35.0% | |
| TGTCACATTGTCACATATTG+TGG | + | chr7.3:50538961-50538980 | None:intergenic | 35.0% | |
| TTACTCTTTCTGCAAGACTA+TGG | + | chr7.3:50538854-50538873 | None:intergenic | 35.0% | |
| TTCTGCAACAGTTGAATTCA+TGG | + | chr7.3:50538150-50538169 | None:intergenic | 35.0% | |
| TTTGGAAGTAGGAGTTTCAA+TGG | - | chr7.3:50538218-50538237 | MS.gene051750:intron | 35.0% | |
| ! | CTAAGTGGATTTAATGAAGC+TGG | - | chr7.3:50539968-50539987 | MS.gene051750:CDS | 35.0% |
| ! | GGGGGTACAAATAGTAATAA+TGG | - | chr7.3:50538732-50538751 | MS.gene051750:intron | 35.0% |
| ! | GTTGAGATGTTCAATTTTGG+AGG | + | chr7.3:50538122-50538141 | None:intergenic | 35.0% |
| !! | AATTCTCTTGCTTTGGAAGT+AGG | - | chr7.3:50538207-50538226 | MS.gene051750:intron | 35.0% |
| !! | GTTGTTGACTTATCCCATAT+TGG | + | chr7.3:50537873-50537892 | None:intergenic | 35.0% |
| !! | TTTTGGAGGAGAATTCAAAG+GGG | + | chr7.3:50538108-50538127 | None:intergenic | 35.0% |
| !!! | GCCATCATGGTTTTAAATTG+TGG | + | chr7.3:50539055-50539074 | None:intergenic | 35.0% |
| AACCATCTTCAATGCCTACA+TGG | - | chr7.3:50537802-50537821 | MS.gene051750:CDS | 40.0% | |
| AACTTCTAGTAACCCTGCAA+TGG | - | chr7.3:50538508-50538527 | MS.gene051750:CDS | 40.0% | |
| AGCAGAGGAAGAATCAAAAG+GGG | - | chr7.3:50538713-50538732 | MS.gene051750:CDS | 40.0% | |
| ATTCATGTCAGAGCAAGAAG+AGG | - | chr7.3:50538813-50538832 | MS.gene051750:intron | 40.0% | |
| CAGTGGCCAATTTCATAGAT+AGG | + | chr7.3:50539600-50539619 | None:intergenic | 40.0% | |
| CCATCTGAACAATTGTGTTG+AGG | + | chr7.3:50540486-50540505 | None:intergenic | 40.0% | |
| CCTCAACACAATTGTTCAGA+TGG | - | chr7.3:50540483-50540502 | MS.gene051750:CDS | 40.0% | |
| GATGAAAGTGATTGCCATGT+AGG | + | chr7.3:50537819-50537838 | None:intergenic | 40.0% | |
| GCTGCAAAATTCTCTTGCTT+TGG | - | chr7.3:50538200-50538219 | MS.gene051750:intron | 40.0% | |
| GGCATAAACCACCATCTAAT+GGG | + | chr7.3:50539922-50539941 | None:intergenic | 40.0% | |
| TACCAACCTTATTGCAACCA+GGG | + | chr7.3:50539183-50539202 | None:intergenic | 40.0% | |
| TCCCTTCATTCACGTAGTTT+CGG | - | chr7.3:50540201-50540220 | MS.gene051750:CDS | 40.0% | |
| TGGCATAAACCACCATCTAA+TGG | + | chr7.3:50539923-50539942 | None:intergenic | 40.0% | |
| TGTTGTTGCCCATAATAGGA+TGG | + | chr7.3:50539836-50539855 | None:intergenic | 40.0% | |
| TTACCAACCTTATTGCAACC+AGG | + | chr7.3:50539184-50539203 | None:intergenic | 40.0% | |
| ! | ATAAGTGCATGCCAAGGTTT+TGG | + | chr7.3:50539943-50539962 | None:intergenic | 40.0% |
| ! | ATGGTGCTGAGGAATCTAAT+GGG | + | chr7.3:50539817-50539836 | None:intergenic | 40.0% |
| ! | ATGTTGGAATTTGAAGCTGC+AGG | + | chr7.3:50537948-50537967 | None:intergenic | 40.0% |
| ! | ATTTAATGAAGCTGGCTCAC+AGG | - | chr7.3:50539976-50539995 | MS.gene051750:CDS | 40.0% |
| !! | AGTTTAAGGGCTCTAGACAA+TGG | - | chr7.3:50539670-50539689 | MS.gene051750:CDS | 40.0% |
| AACTCAGTGGACCCATTAGA+TGG | - | chr7.3:50539908-50539927 | MS.gene051750:CDS | 45.0% | |
| ACCCGAAACTACGTGAATGA+AGG | + | chr7.3:50540206-50540225 | None:intergenic | 45.0% | |
| ATTGGCCACTGTTAACACCA+AGG | - | chr7.3:50539609-50539628 | MS.gene051750:CDS | 45.0% | |
| CCCGAAACTACGTGAATGAA+GGG | + | chr7.3:50540205-50540224 | None:intergenic | 45.0% | |
| CCCTTCATTCACGTAGTTTC+GGG | - | chr7.3:50540202-50540221 | MS.gene051750:CDS | 45.0% | |
| CCTCAGCACCATCCTATTAT+GGG | - | chr7.3:50539825-50539844 | MS.gene051750:CDS | 45.0% | |
| CTTCTACAAGATCTTGTCCC+TGG | - | chr7.3:50539163-50539182 | MS.gene051750:CDS | 45.0% | |
| GAGCAATTCAAAACCTCCTG+AGG | - | chr7.3:50538776-50538795 | MS.gene051750:intron | 45.0% | |
| GCAGAATTCTCAACTGATCC+TGG | - | chr7.3:50538164-50538183 | MS.gene051750:intron | 45.0% | |
| GCAGAGGAAGAATCAAAAGG+GGG | - | chr7.3:50538714-50538733 | MS.gene051750:CDS | 45.0% | |
| GGAGGGAGAAAATCAGTGAA+AGG | - | chr7.3:50539134-50539153 | MS.gene051750:CDS | 45.0% | |
| GGTGGTTTATGCCAAAACCT+TGG | - | chr7.3:50539929-50539948 | MS.gene051750:CDS | 45.0% | |
| GTGAAGATAAGTGCATGCCA+AGG | + | chr7.3:50539949-50539968 | None:intergenic | 45.0% | |
| GTGGACCGTCTCAAAATAAC+TGG | - | chr7.3:50540299-50540318 | MS.gene051750:CDS | 45.0% | |
| TCCTCAGCACCATCCTATTA+TGG | - | chr7.3:50539824-50539843 | MS.gene051750:CDS | 45.0% | |
| TCTTGTCCCTGGTTGCAATA+AGG | - | chr7.3:50539174-50539193 | MS.gene051750:CDS | 45.0% | |
| ! | ATCATTGCAGCGTCAAGTTG+AGG | - | chr7.3:50539334-50539353 | MS.gene051750:intron | 45.0% |
| ! | GATGGTGCTGAGGAATCTAA+TGG | + | chr7.3:50539818-50539837 | None:intergenic | 45.0% |
| ! | TAATGGGTCCACTGAGTTGT+GGG | + | chr7.3:50539906-50539925 | None:intergenic | 45.0% |
| ! | TGCTTTTCCAGTGACCTAGA+AGG | + | chr7.3:50539282-50539301 | None:intergenic | 45.0% |
| ! | TGTGAATTGCTGGGTTTTGC+TGG | + | chr7.3:50539859-50539878 | None:intergenic | 45.0% |
| !! | ATCCACCTTGGTGTTAACAG+TGG | + | chr7.3:50539617-50539636 | None:intergenic | 45.0% |
| !! | ATGTAATCCTTTGGTGCCTC+AGG | + | chr7.3:50538795-50538814 | None:intergenic | 45.0% |
| !! | CTGGTGTTGTTGCCCATAAT+AGG | + | chr7.3:50539840-50539859 | None:intergenic | 45.0% |
| !! | TGCCATGTAGGCATTGAAGA+TGG | + | chr7.3:50537807-50537826 | None:intergenic | 45.0% |
| !!! | TTTTTGTTTATATTATAAAT+TGG | - | chr7.3:50539477-50539496 | MS.gene051750:CDS | 5.0% |
| AACTGTGACCCACAACTCAG+TGG | - | chr7.3:50539895-50539914 | MS.gene051750:CDS | 50.0% | |
| GCAGCTCTTTCTGCAAAACC+AGG | + | chr7.3:50538185-50538204 | None:intergenic | 50.0% | |
| GTCCCTGGTTGCAATAAGGT+TGG | - | chr7.3:50539178-50539197 | MS.gene051750:CDS | 50.0% | |
| TACGACCGCAATTGCAGTTG+CGG | - | chr7.3:50539028-50539047 | MS.gene051750:intron | 50.0% | |
| TCAGTGGACCCATTAGATGG+TGG | - | chr7.3:50539911-50539930 | MS.gene051750:CDS | 50.0% | |
| ! | AAAACCTCCTGAGGCACCAA+AGG | - | chr7.3:50538785-50538804 | MS.gene051750:intron | 50.0% |
| ! | CCCATAATAGGATGGTGCTG+AGG | + | chr7.3:50539828-50539847 | None:intergenic | 50.0% |
| ! | CTAATGGGTCCACTGAGTTG+TGG | + | chr7.3:50539907-50539926 | None:intergenic | 50.0% |
| !! | TAATCCTTTGGTGCCTCAGG+AGG | + | chr7.3:50538792-50538811 | None:intergenic | 50.0% |
| GGCCACTGTTAACACCAAGG+TGG | - | chr7.3:50539612-50539631 | MS.gene051750:CDS | 55.0% | |
| GTGGTCCGCAACTGCAATTG+CGG | + | chr7.3:50539036-50539055 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 50537770 | 50540559 | 50537770 | ID=MS.gene051750 |
| chr7.3 | mRNA | 50537770 | 50540559 | 50537770 | ID=MS.gene051750.t1;Parent=MS.gene051750 |
| chr7.3 | exon | 50539800 | 50540559 | 50539800 | ID=MS.gene051750.t1.exon1;Parent=MS.gene051750.t1 |
| chr7.3 | CDS | 50539800 | 50540559 | 50539800 | ID=cds.MS.gene051750.t1;Parent=MS.gene051750.t1 |
| chr7.3 | exon | 50539460 | 50539693 | 50539460 | ID=MS.gene051750.t1.exon2;Parent=MS.gene051750.t1 |
| chr7.3 | CDS | 50539460 | 50539693 | 50539460 | ID=cds.MS.gene051750.t1;Parent=MS.gene051750.t1 |
| chr7.3 | exon | 50539134 | 50539199 | 50539134 | ID=MS.gene051750.t1.exon3;Parent=MS.gene051750.t1 |
| chr7.3 | CDS | 50539134 | 50539199 | 50539134 | ID=cds.MS.gene051750.t1;Parent=MS.gene051750.t1 |
| chr7.3 | exon | 50538974 | 50539042 | 50538974 | ID=MS.gene051750.t1.exon4;Parent=MS.gene051750.t1 |
| chr7.3 | CDS | 50538974 | 50539042 | 50538974 | ID=cds.MS.gene051750.t1;Parent=MS.gene051750.t1 |
| chr7.3 | exon | 50538663 | 50538734 | 50538663 | ID=MS.gene051750.t1.exon5;Parent=MS.gene051750.t1 |
| chr7.3 | CDS | 50538663 | 50538734 | 50538663 | ID=cds.MS.gene051750.t1;Parent=MS.gene051750.t1 |
| chr7.3 | exon | 50538332 | 50538553 | 50538332 | ID=MS.gene051750.t1.exon6;Parent=MS.gene051750.t1 |
| chr7.3 | CDS | 50538332 | 50538553 | 50538332 | ID=cds.MS.gene051750.t1;Parent=MS.gene051750.t1 |
| chr7.3 | exon | 50537770 | 50537872 | 50537770 | ID=MS.gene051750.t1.exon7;Parent=MS.gene051750.t1 |
| chr7.3 | CDS | 50537770 | 50537872 | 50537770 | ID=cds.MS.gene051750.t1;Parent=MS.gene051750.t1 |
| Gene Sequence |
| Protein sequence |
