Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94151.t1 | KEH28305.1 | 100 | 52 | 0 | 0 | 1 | 52 | 1 | 52 | 6.10E-16 | 94.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94151.t1 | Q07202 | 78.7 | 197 | 4 | 1 | 1 | 197 | 1 | 159 | 1.9e-18 | 94.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94151.t1 | G7K7D5 | 98.1 | 52 | 1 | 0 | 1 | 52 | 1 | 52 | 1.3e-15 | 93.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene061113 | MS.gene94151 | 0.800799 | 1.22E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94151.t1 | MTR_5g084570 | 88.000 | 50 | 5 | 1 | 1 | 49 | 1 | 50 | 2.98e-24 | 95.5 |
| MS.gene94151.t1 | MTR_5g084470 | 97.959 | 49 | 1 | 0 | 1 | 49 | 1 | 49 | 1.84e-17 | 78.2 |
| MS.gene94151.t1 | MTR_5g084470 | 91.228 | 57 | 5 | 0 | 1 | 57 | 1 | 57 | 2.98e-16 | 75.1 |
| MS.gene94151.t1 | MTR_5g084530 | 54.861 | 144 | 49 | 1 | 1 | 144 | 1 | 128 | 2.99e-15 | 70.5 |
| MS.gene94151.t1 | MTR_5g084540 | 66.102 | 118 | 24 | 2 | 1 | 117 | 1 | 103 | 1.56e-14 | 69.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 133 sgRNAs with CRISPR-Local
Find 103 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTTATAACCACCACCATATT+TGG | 0.184009 | 5.4:+66813081 | None:intergenic |
| ATTACTACCATCTCCATATT+TGG | 0.186365 | 5.4:+66812664 | None:intergenic |
| TTGAACAATGGATTCGAAAA+AGG | 0.281503 | 5.4:-66813597 | None:intergenic |
| GAAGTAAATGATGCCAAATA+TGG | 0.319257 | 5.4:-66812677 | MS.gene94151:CDS |
| GAAGTAAACGATGCCAAATA+TGG | 0.342429 | 5.4:-66813094 | MS.gene94151:CDS |
| GGTGGAGGTCACGGTGGTCA+TGG | 0.421667 | 5.4:-66812743 | MS.gene94151:CDS |
| GGTGGAGGTCACGGTGGTCA+TGG | 0.425233 | 5.4:-66812785 | MS.gene94151:CDS |
| TTTGAGTGTTGTCCTCAGTT+TGG | 0.439668 | 5.4:+66812522 | None:intergenic |
| CATGCTAGGCCTCTTGGCTA+TGG | 0.442877 | 5.4:-66813567 | MS.gene94151:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.449116 | 5.4:-66812878 | MS.gene94151:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.449116 | 5.4:-66812917 | MS.gene94151:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.449116 | 5.4:-66812956 | MS.gene94151:CDS |
| CACGGTGGACATGGTGGCCA+TGG | 0.451717 | 5.4:-66812569 | MS.gene94151:CDS |
| GGTGGTTACAATGGTGGAGG+TGG | 0.452767 | 5.4:-66812995 | MS.gene94151:CDS |
| CACGGTGGACACGGTGGACA+TGG | 0.456773 | 5.4:-66812578 | MS.gene94151:CDS |
| GGTGGATACAATGGTGGAGG+TGG | 0.457644 | 5.4:-66812839 | MS.gene94151:CDS |
| AATCCTCATGCTAGGCCTCT+TGG | 0.463972 | 5.4:-66813573 | MS.gene94151:CDS |
| CATGGTGGCCATGGTGGTCA+CGG | 0.466257 | 5.4:-66812560 | MS.gene94151:CDS |
| CACGGTGGTCATGGTGGAGG+TGG | 0.469838 | 5.4:-66812776 | MS.gene94151:CDS |
| AACTTCCACCGATGCTAAGA+AGG | 0.471120 | 5.4:-66813504 | MS.gene94151:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.479043 | 5.4:-66812761 | MS.gene94151:CDS |
| GGAGGTGGTTACAATGGTGG+TGG | 0.479043 | 5.4:-66812803 | MS.gene94151:CDS |
| GGTCACGGTGGTCATGGTGG+AGG | 0.488013 | 5.4:-66812779 | MS.gene94151:CDS |
| GGTGGTTACCACAATGGTGG+AGG | 0.499176 | 5.4:-66813016 | MS.gene94151:CDS |
| GTAACCACCACCACCGTTGT+GGG | 0.499800 | 5.4:+66812892 | None:intergenic |
| GTAACCACCACCACCGTTGT+GGG | 0.499800 | 5.4:+66812931 | None:intergenic |
| GTAACCACCACCACCGTTGT+GGG | 0.499800 | 5.4:+66812970 | None:intergenic |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.4:-66812758 | MS.gene94151:CDS |
| GGTGGTTACAATGGTGGTGG+AGG | 0.504299 | 5.4:-66812800 | MS.gene94151:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.4:-66812860 | MS.gene94151:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.4:-66812899 | MS.gene94151:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.4:-66812938 | MS.gene94151:CDS |
| GGTGGTTCCCACAACGGTGG+TGG | 0.506318 | 5.4:-66812977 | MS.gene94151:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5.4:-66812752 | MS.gene94151:CDS |
| TACAATGGTGGTGGAGGTCA+CGG | 0.506705 | 5.4:-66812794 | MS.gene94151:CDS |
| AGTGTTGTCCTCAGTTTGGT+CGG | 0.506970 | 5.4:+66812526 | None:intergenic |
| TTTCCTCAGTGATGTCCGCT+AGG | 0.509380 | 5.4:-66813538 | MS.gene94151:CDS |
| GTATCCACCACCACCGTTGT+GGG | 0.511667 | 5.4:+66812853 | None:intergenic |
| CATGGTGGTCACGGTGGACA+CGG | 0.515497 | 5.4:-66812551 | MS.gene94151:CDS |
| GGTTATAACCACGGTGGTGG+TGG | 0.518027 | 5.4:-66813034 | MS.gene94151:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.519632 | 5.4:-66812857 | MS.gene94151:CDS |
| CATGGTGGAGGTGGTTACAA+TGG | 0.522016 | 5.4:-66812767 | MS.gene94151:CDS |
| GGAGGTGGTTACAATGGTGG+AGG | 0.523740 | 5.4:-66812998 | MS.gene94151:CDS |
| GGAGGTTATAACCACGGTGG+TGG | 0.533367 | 5.4:-66813037 | MS.gene94151:CDS |
| GGAGGTGGTCACGGTGGACA+CGG | 0.533640 | 5.4:-66812587 | MS.gene94151:CDS |
| AGTAATTACAACGATGGTAG+AGG | 0.535647 | 5.4:-66812647 | MS.gene94151:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.538164 | 5.4:-66812896 | MS.gene94151:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.538164 | 5.4:-66812935 | MS.gene94151:CDS |
| GGTTCCCACAACGGTGGTGG+TGG | 0.538164 | 5.4:-66812974 | MS.gene94151:CDS |
| TTCCTCAGTGATGTCCGCTA+GGG | 0.540952 | 5.4:-66813537 | MS.gene94151:CDS |
| TGTATCCACCACCACCGTTG+TGG | 0.544285 | 5.4:+66812852 | None:intergenic |
| GGTTACCACAATGGTGGAGG+TGG | 0.547395 | 5.4:-66813013 | MS.gene94151:CDS |
| GGTTACAACCATGGTGGAGG+TGG | 0.550910 | 5.4:-66812818 | MS.gene94151:CDS |
| TGTAACCACCACCACCGTTG+TGG | 0.554711 | 5.4:+66812891 | None:intergenic |
| TGTAACCACCACCACCGTTG+TGG | 0.554711 | 5.4:+66812930 | None:intergenic |
| TGTAACCACCACCACCGTTG+TGG | 0.554711 | 5.4:+66812969 | None:intergenic |
| GGTGGTTACAACCATGGTGG+AGG | 0.556342 | 5.4:-66812821 | MS.gene94151:CDS |
| GGATACAACCACGGTGGAGG+TGG | 0.557091 | 5.4:-66812623 | MS.gene94151:CDS |
| GGTTACAACCACGGTGGAGG+TGG | 0.560417 | 5.4:-66812602 | MS.gene94151:CDS |
| GGTGGTTACAACCACGGTGG+AGG | 0.568751 | 5.4:-66812605 | MS.gene94151:CDS |
| GGTGGTTATAACCACGGTGG+TGG | 0.571829 | 5.4:-66813070 | MS.gene94151:CDS |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5.4:-66812887 | MS.gene94151:CDS |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5.4:-66812926 | MS.gene94151:CDS |
| AACGGTGGTGGTGGTTACAA+TGG | 0.578197 | 5.4:-66812965 | MS.gene94151:CDS |
| AACCACGGTGGAGGTGGTCA+CGG | 0.578947 | 5.4:-66812596 | MS.gene94151:CDS |
| AACGATGCCAAATATGGTGG+TGG | 0.582570 | 5.4:-66813088 | MS.gene94151:CDS |
| GGAGGTCACGGTGGTCATGG+TGG | 0.586548 | 5.4:-66812782 | MS.gene94151:CDS |
| AATGATGCCAAATATGGAGA+TGG | 0.589164 | 5.4:-66812671 | MS.gene94151:CDS |
| AACGGTGGTGGTGGATACAA+TGG | 0.590390 | 5.4:-66812848 | MS.gene94151:CDS |
| CTCACCCTTCTTAGCATCGG+TGG | 0.593869 | 5.4:+66813499 | None:intergenic |
| CATGGTGGAGGTGGTTACAA+TGG | 0.597788 | 5.4:-66812809 | MS.gene94151:CDS |
| AACCACGGTGGTGGTTACAA+TGG | 0.598930 | 5.4:-66813061 | MS.gene94151:CDS |
| TAGCTCACCCTTCTTAGCAT+CGG | 0.600224 | 5.4:+66813496 | None:intergenic |
| GGTGGTGGATACAATGGTGG+AGG | 0.601928 | 5.4:-66812842 | MS.gene94151:CDS |
| GGTGGATACAACCACGGTGG+AGG | 0.603384 | 5.4:-66812626 | MS.gene94151:CDS |
| CACGGTGGTGGTTACAATGG+TGG | 0.608752 | 5.4:-66813058 | MS.gene94151:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.4:-66812881 | MS.gene94151:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.4:-66812920 | MS.gene94151:CDS |
| GGTGGTGGTTACAATGGTGG+AGG | 0.609082 | 5.4:-66812959 | MS.gene94151:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.613370 | 5.4:-66812764 | MS.gene94151:CDS |
| GGTGGAGGTGGTTACAATGG+TGG | 0.613370 | 5.4:-66812806 | MS.gene94151:CDS |
| GGTGGTGGTGGTTACCACAA+TGG | 0.615503 | 5.4:-66813022 | MS.gene94151:CDS |
| AATGGTGGAGGTGGTTACAA+TGG | 0.617120 | 5.4:-66813004 | MS.gene94151:CDS |
| ACTTCCACCGATGCTAAGAA+GGG | 0.618699 | 5.4:-66813503 | MS.gene94151:intron |
| GGTGGTGGTTACAATGGTGG+AGG | 0.625782 | 5.4:-66813055 | MS.gene94151:CDS |
| AATTACAACGATGGTAGAGG+TGG | 0.629743 | 5.4:-66812644 | MS.gene94151:CDS |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.4:-66812866 | MS.gene94151:CDS |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.4:-66812905 | MS.gene94151:CDS |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.4:-66812944 | MS.gene94151:CDS |
| GGTGGAGGTGGTTCCCACAA+CGG | 0.630975 | 5.4:-66812983 | MS.gene94151:CDS |
| TGTAACCACCTCCACCATTG+TGG | 0.632589 | 5.4:+66813008 | None:intergenic |
| ATCTGTTGCCGTGCAAACTG+AGG | 0.633170 | 5.4:-66812711 | MS.gene94151:CDS |
| GGTGGACATGGTGGCCATGG+TGG | 0.633718 | 5.4:-66812566 | MS.gene94151:CDS |
| GGAGGTCACGGTGGTCATGG+CGG | 0.640286 | 5.4:-66812740 | MS.gene94151:CDS |
| TAGCCAAGAGGCCTAGCATG+AGG | 0.641377 | 5.4:+66813570 | None:intergenic |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.4:-66812863 | MS.gene94151:CDS |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.4:-66812902 | MS.gene94151:CDS |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.4:-66812941 | MS.gene94151:CDS |
| GGAGGTGGTTCCCACAACGG+TGG | 0.642570 | 5.4:-66812980 | MS.gene94151:CDS |
| GGTGGCCATGGTGGTCACGG+TGG | 0.648775 | 5.4:-66812557 | MS.gene94151:CDS |
| CATTGTAACCACCTCCACCA+TGG | 0.649002 | 5.4:+66812810 | None:intergenic |
| GGTGGAGGTGGTTACAATGG+TGG | 0.650529 | 5.4:-66813001 | MS.gene94151:CDS |
| GGTGGACACGGTGGACATGG+TGG | 0.654274 | 5.4:-66812575 | MS.gene94151:CDS |
| GATGGTAGTAATTACAACGA+TGG | 0.659893 | 5.4:-66812653 | MS.gene94151:CDS |
| CACGGTGGAGGTGGTCACGG+TGG | 0.660681 | 5.4:-66812593 | MS.gene94151:CDS |
| CGTGTCCACCGTGACCACCA+TGG | 0.663650 | 5.4:+66812552 | None:intergenic |
| GGTGGTCACGGTGGACACGG+TGG | 0.663754 | 5.4:-66812584 | MS.gene94151:CDS |
| GGTGGTGGTTACCACAATGG+TGG | 0.664489 | 5.4:-66813019 | MS.gene94151:CDS |
| TATGGTGGTGGTTATAACCA+CGG | 0.669028 | 5.4:-66813076 | MS.gene94151:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5.4:-66812884 | MS.gene94151:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5.4:-66812923 | MS.gene94151:CDS |
| GGTGGTGGTGGTTACAATGG+TGG | 0.671495 | 5.4:-66812962 | MS.gene94151:CDS |
| GGTGGAGGTGGTTACAACCA+TGG | 0.679817 | 5.4:-66812827 | MS.gene94151:CDS |
| GGTGGAGGTGGTTACAACCA+CGG | 0.683488 | 5.4:-66812611 | MS.gene94151:CDS |
| CACCGTGACCACCTCCACCG+TGG | 0.688584 | 5.4:+66812594 | None:intergenic |
| ACACGGTGCCGACCAAACTG+AGG | 0.694971 | 5.4:-66812534 | MS.gene94151:CDS |
| GGTGGTGGTGGATACAATGG+TGG | 0.695355 | 5.4:-66812845 | MS.gene94151:CDS |
| AAATAAGAGCCATAGCCAAG+AGG | 0.700367 | 5.4:+66813558 | None:intergenic |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5.4:-66812749 | MS.gene94151:CDS |
| AATGGTGGTGGAGGTCACGG+TGG | 0.715780 | 5.4:-66812791 | MS.gene94151:CDS |
| AATGGTGGAGGTTATAACCA+CGG | 0.716087 | 5.4:-66813043 | MS.gene94151:CDS |
| GGTTGTAACCACCTCCACCG+TGG | 0.717584 | 5.4:+66812615 | None:intergenic |
| AGTTTCAGTTAAGTCCCTAG+CGG | 0.722649 | 5.4:+66813523 | None:intergenic |
| GTCCCTAGCGGACATCACTG+AGG | 0.722830 | 5.4:+66813535 | None:intergenic |
| GGTAGAGGTGGATACAACCA+CGG | 0.725558 | 5.4:-66812632 | MS.gene94151:CDS |
| GTAAACGATGCCAAATATGG+TGG | 0.739461 | 5.4:-66813091 | MS.gene94151:CDS |
| CACCATTGTAACCACCACCG+TGG | 0.740555 | 5.4:+66813059 | None:intergenic |
| GGAGGTGGTTACAACCATGG+TGG | 0.740649 | 5.4:-66812824 | MS.gene94151:CDS |
| TGTGGTAACCACCACCACCG+TGG | 0.742556 | 5.4:+66813026 | None:intergenic |
| AGAGGTGGATACAACCACGG+TGG | 0.784418 | 5.4:-66812629 | MS.gene94151:CDS |
| GGAGGTGGTTACAACCACGG+TGG | 0.797028 | 5.4:-66812608 | MS.gene94151:CDS |
| GGTGGAGGTTATAACCACGG+TGG | 0.800098 | 5.4:-66813040 | MS.gene94151:CDS |
| GGTGGTGGTTATAACCACGG+TGG | 0.808173 | 5.4:-66813073 | MS.gene94151:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATCATTTTATATAACATTG+AGG | + | chr5.4:66812830-66812849 | None:intergenic | 15.0% |
| !!! | ATTTTTTTCTACTTATTTGA+AGG | - | chr5.4:66812718-66812737 | MS.gene94151:CDS | 15.0% |
| ATTACTACCATCTCCATATT+TGG | + | chr5.4:66813446-66813465 | None:intergenic | 30.0% | |
| CATATATATTGTGTTTGCAG+AGG | - | chr5.4:66812973-66812992 | MS.gene94151:CDS | 30.0% | |
| GAAGTAAATGATGCCAAATA+TGG | - | chr5.4:66813430-66813449 | MS.gene94151:intron | 30.0% | |
| AATGATGCCAAATATGGAGA+TGG | - | chr5.4:66813436-66813455 | MS.gene94151:intron | 35.0% | |
| AGTAATTACAACGATGGTAG+AGG | - | chr5.4:66813460-66813479 | MS.gene94151:intron | 35.0% | |
| GAAGTAAACGATGCCAAATA+TGG | - | chr5.4:66813013-66813032 | MS.gene94151:CDS | 35.0% | |
| GATGGTAGTAATTACAACGA+TGG | - | chr5.4:66813454-66813473 | MS.gene94151:intron | 35.0% | |
| GTTATAACCACCACCATATT+TGG | + | chr5.4:66813029-66813048 | None:intergenic | 35.0% | |
| AAAAAGGCAATCCTCATGCT+AGG | - | chr5.4:66812526-66812545 | MS.gene94151:CDS | 40.0% | |
| AAATAAGAGCCATAGCCAAG+AGG | + | chr5.4:66812552-66812571 | None:intergenic | 40.0% | |
| AATTACAACGATGGTAGAGG+TGG | - | chr5.4:66813463-66813482 | MS.gene94151:intron | 40.0% | |
| AGTTTCAGTTAAGTCCCTAG+CGG | + | chr5.4:66812587-66812606 | None:intergenic | 40.0% | |
| GTAAACGATGCCAAATATGG+TGG | - | chr5.4:66813016-66813035 | MS.gene94151:CDS | 40.0% | |
| ! | AATGGTGGAGGTTATAACCA+CGG | - | chr5.4:66813064-66813083 | MS.gene94151:CDS | 40.0% |
| ! | AGTCTTTTCCTCAGTTTGCA+CGG | + | chr5.4:66813407-66813426 | None:intergenic | 40.0% |
| ! | TTTGAGTGTTGTCCTCAGTT+TGG | + | chr5.4:66813588-66813607 | None:intergenic | 40.0% |
| !! | TATGGTGGTGGTTATAACCA+CGG | - | chr5.4:66813031-66813050 | MS.gene94151:CDS | 40.0% |
| AACGATGCCAAATATGGTGG+TGG | - | chr5.4:66813019-66813038 | MS.gene94151:CDS | 45.0% | |
| AACTTCCACCGATGCTAAGA+AGG | - | chr5.4:66812603-66812622 | MS.gene94151:CDS | 45.0% | |
| ACTTCCACCGATGCTAAGAA+GGG | - | chr5.4:66812604-66812623 | MS.gene94151:CDS | 45.0% | |
| AGTGTTGTCCTCAGTTTGGT+CGG | + | chr5.4:66813584-66813603 | None:intergenic | 45.0% | |
| TAGCTCACCCTTCTTAGCAT+CGG | + | chr5.4:66812614-66812633 | None:intergenic | 45.0% | |
| ! | AATGGTGGAGGTGGTTACAA+TGG | - | chr5.4:66813103-66813122 | MS.gene94151:CDS | 45.0% |
| AATCCTCATGCTAGGCCTCT+TGG | - | chr5.4:66812534-66812553 | MS.gene94151:CDS | 50.0% | |
| ATCTGTTGCCGTGCAAACTG+AGG | - | chr5.4:66813396-66813415 | MS.gene94151:intron | 50.0% | |
| CATTGTAACCACCTCCACCA+TGG | + | chr5.4:66813105-66813124 | None:intergenic | 50.0% | |
| GGTAGAGGTGGATACAACCA+CGG | - | chr5.4:66813475-66813494 | MS.gene94151:intron | 50.0% | |
| TGTAACCACCTCCACCATTG+TGG | + | chr5.4:66813102-66813121 | None:intergenic | 50.0% | |
| TTCCTCAGTGATGTCCGCTA+GGG | - | chr5.4:66812570-66812589 | MS.gene94151:CDS | 50.0% | |
| TTTCCTCAGTGATGTCCGCT+AGG | - | chr5.4:66812569-66812588 | MS.gene94151:CDS | 50.0% | |
| ! | AACCACGGTGGTGGTTACAA+TGG | - | chr5.4:66813046-66813065 | MS.gene94151:CDS | 50.0% |
| ! | CATGGTGGAGGTGGTTACAA+TGG | - | chr5.4:66813298-66813317 | MS.gene94151:intron | 50.0% |
| !! | AACGGTGGTGGTGGATACAA+TGG | - | chr5.4:66813259-66813278 | MS.gene94151:intron | 50.0% |
| !! | AACGGTGGTGGTGGTTACAA+TGG | - | chr5.4:66813142-66813161 | MS.gene94151:intron | 50.0% |
| !! | TACAATGGTGGTGGAGGTCA+CGG | - | chr5.4:66813313-66813332 | MS.gene94151:intron | 50.0% |
| AGAGGTGGATACAACCACGG+TGG | - | chr5.4:66813478-66813497 | MS.gene94151:intron | 55.0% | |
| CACCATTGTAACCACCACCG+TGG | + | chr5.4:66813051-66813070 | None:intergenic | 55.0% | |
| CATGCTAGGCCTCTTGGCTA+TGG | - | chr5.4:66812540-66812559 | MS.gene94151:CDS | 55.0% | |
| GGAGGTGGTTACAACCATGG+TGG | - | chr5.4:66813283-66813302 | MS.gene94151:intron | 55.0% | |
| GGAGGTGGTTACAATGGTGG+AGG | - | chr5.4:66813109-66813128 | MS.gene94151:CDS | 55.0% | |
| GGAGGTGGTTACAATGGTGG+TGG | - | chr5.4:66813109-66813128 | MS.gene94151:CDS | 55.0% | |
| GGAGGTTATAACCACGGTGG+TGG | - | chr5.4:66813070-66813089 | MS.gene94151:CDS | 55.0% | |
| GGTGGAGGTGGTTACAACCA+CGG | - | chr5.4:66813280-66813299 | MS.gene94151:intron | 55.0% | |
| GGTGGAGGTGGTTACAACCA+TGG | - | chr5.4:66813280-66813299 | MS.gene94151:intron | 55.0% | |
| GGTGGAGGTGGTTACAATGG+TGG | - | chr5.4:66813106-66813125 | MS.gene94151:CDS | 55.0% | |
| GGTGGAGGTTATAACCACGG+TGG | - | chr5.4:66813067-66813086 | MS.gene94151:CDS | 55.0% | |
| GGTGGTTACAACCATGGTGG+AGG | - | chr5.4:66813286-66813305 | MS.gene94151:intron | 55.0% | |
| GGTGGTTACCACAATGGTGG+AGG | - | chr5.4:66813091-66813110 | MS.gene94151:CDS | 55.0% | |
| GGTGGTTATAACCACGGTGG+TGG | - | chr5.4:66813037-66813056 | MS.gene94151:CDS | 55.0% | |
| GTAACCACCACCACCGTTGT+GGG | + | chr5.4:66813140-66813159 | None:intergenic | 55.0% | |
| GTATCCACCACCACCGTTGT+GGG | + | chr5.4:66813257-66813276 | None:intergenic | 55.0% | |
| TAGCCAAGAGGCCTAGCATG+AGG | + | chr5.4:66812540-66812559 | None:intergenic | 55.0% | |
| TGTAACCACCACCACCGTTG+TGG | + | chr5.4:66813141-66813160 | None:intergenic | 55.0% | |
| TGTATCCACCACCACCGTTG+TGG | + | chr5.4:66813258-66813277 | None:intergenic | 55.0% | |
| ! | CACGGTGGTGGTTACAATGG+TGG | - | chr5.4:66813049-66813068 | MS.gene94151:CDS | 55.0% |
| ! | CTCACCCTTCTTAGCATCGG+TGG | + | chr5.4:66812611-66812630 | None:intergenic | 55.0% |
| ! | GGTGGATACAATGGTGGAGG+TGG | - | chr5.4:66813268-66813287 | MS.gene94151:intron | 55.0% |
| ! | GGTGGTGGTTACAATGGTGG+AGG | - | chr5.4:66813052-66813071 | MS.gene94151:CDS | 55.0% |
| ! | GGTGGTGGTTACCACAATGG+TGG | - | chr5.4:66813088-66813107 | MS.gene94151:CDS | 55.0% |
| ! | GGTGGTGGTTATAACCACGG+TGG | - | chr5.4:66813034-66813053 | MS.gene94151:CDS | 55.0% |
| ! | GGTGGTTACAATGGTGGAGG+TGG | - | chr5.4:66813055-66813074 | MS.gene94151:CDS | 55.0% |
| ! | GGTTACAACCATGGTGGAGG+TGG | - | chr5.4:66813289-66813308 | MS.gene94151:intron | 55.0% |
| ! | GGTTACCACAATGGTGGAGG+TGG | - | chr5.4:66813094-66813113 | MS.gene94151:CDS | 55.0% |
| ! | GGTTATAACCACGGTGGTGG+TGG | - | chr5.4:66813040-66813059 | MS.gene94151:CDS | 55.0% |
| !! | GGTGGTGGATACAATGGTGG+AGG | - | chr5.4:66813265-66813284 | MS.gene94151:intron | 55.0% |
| !! | GGTGGTGGTGGATACAATGG+TGG | - | chr5.4:66813262-66813281 | MS.gene94151:intron | 55.0% |
| !! | GGTGGTGGTGGTTACAATGG+TGG | - | chr5.4:66813145-66813164 | MS.gene94151:intron | 55.0% |
| !! | GGTGGTGGTGGTTACCACAA+TGG | - | chr5.4:66813085-66813104 | MS.gene94151:CDS | 55.0% |
| !! | GGTGGTTACAATGGTGGTGG+AGG | - | chr5.4:66813307-66813326 | MS.gene94151:intron | 55.0% |
| AACCACGGTGGAGGTGGTCA+CGG | - | chr5.4:66813511-66813530 | MS.gene94151:CDS | 60.0% | |
| CATGGTGGCCATGGTGGTCA+CGG | - | chr5.4:66813547-66813566 | MS.gene94151:CDS | 60.0% | |
| CATGGTGGTCACGGTGGACA+CGG | - | chr5.4:66813556-66813575 | MS.gene94151:CDS | 60.0% | |
| GGAGGTGGTTACAACCACGG+TGG | - | chr5.4:66813499-66813518 | MS.gene94151:intron | 60.0% | |
| GGATACAACCACGGTGGAGG+TGG | - | chr5.4:66813484-66813503 | MS.gene94151:intron | 60.0% | |
| GGTGGAGGTGGTTCCCACAA+CGG | - | chr5.4:66813124-66813143 | MS.gene94151:intron | 60.0% | |
| GGTGGATACAACCACGGTGG+AGG | - | chr5.4:66813481-66813500 | MS.gene94151:intron | 60.0% | |
| GGTGGTTACAACCACGGTGG+AGG | - | chr5.4:66813502-66813521 | MS.gene94151:intron | 60.0% | |
| GGTTACAACCACGGTGGAGG+TGG | - | chr5.4:66813505-66813524 | MS.gene94151:CDS | 60.0% | |
| GGTTGTAACCACCTCCACCG+TGG | + | chr5.4:66813495-66813514 | None:intergenic | 60.0% | |
| TGTGGTAACCACCACCACCG+TGG | + | chr5.4:66813084-66813103 | None:intergenic | 60.0% | |
| ! | GTCCCTAGCGGACATCACTG+AGG | + | chr5.4:66812575-66812594 | None:intergenic | 60.0% |
| !! | AATGGTGGTGGAGGTCACGG+TGG | - | chr5.4:66813316-66813335 | MS.gene94151:intron | 60.0% |
| !! | ACACGGTGCCGACCAAACTG+AGG | - | chr5.4:66813573-66813592 | MS.gene94151:CDS | 60.0% |
| CACGGTGGACACGGTGGACA+TGG | - | chr5.4:66813529-66813548 | MS.gene94151:CDS | 65.0% | |
| CACGGTGGACATGGTGGCCA+TGG | - | chr5.4:66813538-66813557 | MS.gene94151:CDS | 65.0% | |
| CGTGTCCACCGTGACCACCA+TGG | + | chr5.4:66813558-66813577 | None:intergenic | 65.0% | |
| GGAGGTCACGGTGGTCATGG+CGG | - | chr5.4:66813325-66813344 | MS.gene94151:intron | 65.0% | |
| GGAGGTCACGGTGGTCATGG+TGG | - | chr5.4:66813325-66813344 | MS.gene94151:intron | 65.0% | |
| GGAGGTGGTCACGGTGGACA+CGG | - | chr5.4:66813520-66813539 | MS.gene94151:CDS | 65.0% | |
| GGAGGTGGTTCCCACAACGG+TGG | - | chr5.4:66813127-66813146 | MS.gene94151:intron | 65.0% | |
| GGTCACGGTGGTCATGGTGG+AGG | - | chr5.4:66813328-66813347 | MS.gene94151:intron | 65.0% | |
| GGTGGACACGGTGGACATGG+TGG | - | chr5.4:66813532-66813551 | MS.gene94151:CDS | 65.0% | |
| GGTGGACATGGTGGCCATGG+TGG | - | chr5.4:66813541-66813560 | MS.gene94151:CDS | 65.0% | |
| GGTGGAGGTCACGGTGGTCA+TGG | - | chr5.4:66813322-66813341 | MS.gene94151:intron | 65.0% | |
| GGTGGTTCCCACAACGGTGG+TGG | - | chr5.4:66813130-66813149 | MS.gene94151:intron | 65.0% | |
| ! | CACGGTGGTCATGGTGGAGG+TGG | - | chr5.4:66813331-66813350 | MS.gene94151:intron | 65.0% |
| ! | GGTTCCCACAACGGTGGTGG+TGG | - | chr5.4:66813133-66813152 | MS.gene94151:intron | 65.0% |
| CACCGTGACCACCTCCACCG+TGG | + | chr5.4:66813516-66813535 | None:intergenic | 70.0% | |
| CACGGTGGAGGTGGTCACGG+TGG | - | chr5.4:66813514-66813533 | MS.gene94151:CDS | 70.0% | |
| GGTGGCCATGGTGGTCACGG+TGG | - | chr5.4:66813550-66813569 | MS.gene94151:CDS | 70.0% | |
| GGTGGTCACGGTGGACACGG+TGG | - | chr5.4:66813523-66813542 | MS.gene94151:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 66812517 | 66813612 | 66812517 | ID=MS.gene94151 |
| chr5.4 | mRNA | 66812517 | 66813612 | 66812517 | ID=MS.gene94151.t1;Parent=MS.gene94151 |
| chr5.4 | exon | 66813504 | 66813612 | 66813504 | ID=MS.gene94151.t1.exon1;Parent=MS.gene94151.t1 |
| chr5.4 | CDS | 66813504 | 66813612 | 66813504 | ID=cds.MS.gene94151.t1;Parent=MS.gene94151.t1 |
| chr5.4 | exon | 66812517 | 66813136 | 66812517 | ID=MS.gene94151.t1.exon2;Parent=MS.gene94151.t1 |
| chr5.4 | CDS | 66812517 | 66813136 | 66812517 | ID=cds.MS.gene94151.t1;Parent=MS.gene94151.t1 |
| Gene Sequence |
| Protein sequence |
