Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94264.t1 | XP_003623174.1 | 96.4 | 224 | 8 | 0 | 1 | 224 | 1 | 224 | 3.20E-120 | 441 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94264.t1 | P32110 | 72.9 | 225 | 60 | 1 | 1 | 224 | 1 | 225 | 1.7e-90 | 333.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94264.t1 | B7FN12 | 96.4 | 224 | 8 | 0 | 1 | 224 | 1 | 224 | 2.3e-120 | 441.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055151 | MS.gene94264 | 0.87119 | 8.25E-67 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94264.t1 | MTR_7g065290 | 96.429 | 224 | 8 | 0 | 1 | 224 | 1 | 224 | 2.40e-159 | 440 |
| MS.gene94264.t1 | MTR_7g065265 | 89.732 | 224 | 23 | 0 | 1 | 224 | 1 | 224 | 3.89e-147 | 409 |
| MS.gene94264.t1 | MTR_7g065270 | 85.268 | 224 | 33 | 0 | 1 | 224 | 1 | 224 | 1.23e-142 | 397 |
| MS.gene94264.t1 | MTR_7g065600 | 80.357 | 224 | 44 | 0 | 1 | 224 | 1 | 224 | 1.08e-134 | 377 |
| MS.gene94264.t1 | MTR_7g065230 | 81.250 | 224 | 37 | 1 | 1 | 224 | 1 | 219 | 7.18e-132 | 370 |
| MS.gene94264.t1 | MTR_7g065590 | 79.911 | 224 | 45 | 0 | 1 | 224 | 1 | 224 | 3.81e-131 | 369 |
| MS.gene94264.t1 | MTR_7g065260 | 77.778 | 225 | 49 | 1 | 1 | 224 | 8 | 232 | 3.27e-117 | 333 |
| MS.gene94264.t1 | MTR_7g065720 | 69.778 | 225 | 67 | 1 | 1 | 224 | 1 | 225 | 7.84e-113 | 322 |
| MS.gene94264.t1 | MTR_7g065660 | 68.950 | 219 | 68 | 0 | 1 | 219 | 1 | 219 | 1.39e-112 | 322 |
| MS.gene94264.t1 | MTR_7g065630 | 68.037 | 219 | 66 | 1 | 1 | 219 | 19 | 233 | 9.90e-107 | 307 |
| MS.gene94264.t1 | MTR_7g065750 | 67.580 | 219 | 70 | 1 | 1 | 218 | 1 | 219 | 3.38e-106 | 305 |
| MS.gene94264.t1 | MTR_7g065740 | 64.545 | 220 | 77 | 1 | 1 | 219 | 1 | 220 | 3.25e-104 | 300 |
| MS.gene94264.t1 | MTR_4g019790 | 63.927 | 219 | 79 | 0 | 1 | 219 | 1 | 219 | 1.44e-103 | 299 |
| MS.gene94264.t1 | MTR_7g065640 | 61.883 | 223 | 67 | 1 | 1 | 223 | 1 | 205 | 2.87e-99 | 287 |
| MS.gene94264.t1 | MTR_7g065710 | 64.251 | 207 | 70 | 1 | 8 | 214 | 5 | 207 | 8.78e-95 | 276 |
| MS.gene94264.t1 | MTR_4g019780 | 61.860 | 215 | 80 | 2 | 2 | 215 | 3 | 216 | 9.35e-95 | 276 |
| MS.gene94264.t1 | MTR_7g065680 | 63.927 | 219 | 75 | 1 | 1 | 219 | 1 | 215 | 2.80e-89 | 262 |
| MS.gene94264.t1 | MTR_7g065700 | 64.019 | 214 | 73 | 1 | 1 | 214 | 1 | 210 | 3.38e-87 | 257 |
| MS.gene94264.t1 | MTR_6g080440 | 48.558 | 208 | 105 | 2 | 7 | 213 | 3 | 209 | 1.17e-65 | 202 |
| MS.gene94264.t1 | MTR_1g090150 | 46.729 | 214 | 109 | 3 | 6 | 216 | 2 | 213 | 3.23e-62 | 194 |
| MS.gene94264.t1 | MTR_3g099757 | 46.919 | 211 | 110 | 2 | 6 | 215 | 4 | 213 | 6.29e-60 | 188 |
| MS.gene94264.t1 | MTR_8g087425 | 43.182 | 220 | 123 | 2 | 4 | 222 | 2 | 220 | 8.91e-59 | 185 |
| MS.gene94264.t1 | MTR_8g087410 | 44.344 | 221 | 120 | 3 | 1 | 220 | 1 | 219 | 1.13e-56 | 179 |
| MS.gene94264.t1 | MTR_1g115195 | 44.495 | 218 | 118 | 2 | 7 | 221 | 3 | 220 | 1.78e-56 | 179 |
| MS.gene94264.t1 | MTR_1g090070 | 42.534 | 221 | 122 | 3 | 7 | 223 | 9 | 228 | 2.87e-53 | 171 |
| MS.gene94264.t1 | MTR_5g040430 | 41.892 | 222 | 121 | 3 | 1 | 215 | 1 | 221 | 1.31e-52 | 169 |
| MS.gene94264.t1 | MTR_4g059730 | 42.056 | 214 | 118 | 3 | 6 | 215 | 3 | 214 | 3.69e-51 | 165 |
| MS.gene94264.t1 | MTR_1g090060 | 42.105 | 209 | 117 | 2 | 7 | 212 | 3 | 210 | 6.28e-51 | 165 |
| MS.gene94264.t1 | MTR_5g037380 | 42.601 | 223 | 118 | 3 | 1 | 215 | 1 | 221 | 1.07e-50 | 164 |
| MS.gene94264.t1 | MTR_1g090100 | 42.523 | 214 | 119 | 2 | 8 | 218 | 3 | 215 | 1.78e-50 | 164 |
| MS.gene94264.t1 | MTR_1g090090 | 41.905 | 210 | 118 | 2 | 7 | 213 | 3 | 211 | 1.98e-50 | 164 |
| MS.gene94264.t1 | MTR_8g061950 | 42.009 | 219 | 119 | 3 | 5 | 215 | 3 | 221 | 9.90e-50 | 162 |
| MS.gene94264.t1 | MTR_3g467420 | 42.029 | 207 | 115 | 5 | 16 | 220 | 18 | 221 | 2.60e-43 | 145 |
| MS.gene94264.t1 | MTR_2g070130 | 41.262 | 206 | 116 | 5 | 6 | 209 | 3 | 205 | 7.74e-43 | 144 |
| MS.gene94264.t1 | MTR_2g070150 | 41.176 | 204 | 115 | 5 | 6 | 207 | 3 | 203 | 2.88e-42 | 142 |
| MS.gene94264.t1 | MTR_2g070140 | 41.538 | 195 | 109 | 5 | 20 | 212 | 1 | 192 | 1.94e-41 | 140 |
| MS.gene94264.t1 | MTR_3g467430 | 38.813 | 219 | 129 | 5 | 4 | 220 | 6 | 221 | 2.49e-41 | 140 |
| MS.gene94264.t1 | MTR_2g070200 | 41.827 | 208 | 109 | 6 | 6 | 207 | 3 | 204 | 1.90e-40 | 138 |
| MS.gene94264.t1 | MTR_2g070210 | 41.038 | 212 | 116 | 7 | 6 | 212 | 3 | 210 | 4.89e-40 | 137 |
| MS.gene94264.t1 | MTR_2g070120 | 37.104 | 221 | 132 | 5 | 6 | 223 | 3 | 219 | 4.08e-39 | 134 |
| MS.gene94264.t1 | MTR_4g124130 | 44.974 | 189 | 98 | 5 | 6 | 191 | 3 | 188 | 8.25e-39 | 134 |
| MS.gene94264.t1 | MTR_2g070180 | 39.796 | 196 | 113 | 5 | 16 | 209 | 13 | 205 | 8.94e-39 | 134 |
| MS.gene94264.t1 | MTR_8g056940 | 38.942 | 208 | 119 | 5 | 16 | 218 | 13 | 217 | 1.30e-37 | 130 |
| MS.gene94264.t1 | MTR_5g076900 | 37.736 | 212 | 127 | 4 | 3 | 212 | 2 | 210 | 1.90e-37 | 130 |
| MS.gene94264.t1 | MTR_2g070070 | 37.981 | 208 | 124 | 4 | 7 | 212 | 4 | 208 | 8.44e-34 | 120 |
| MS.gene94264.t1 | MTR_2g070060 | 36.538 | 208 | 127 | 4 | 7 | 212 | 4 | 208 | 2.99e-33 | 119 |
| MS.gene94264.t1 | MTR_0186s0030 | 45.385 | 130 | 69 | 2 | 16 | 144 | 13 | 141 | 2.38e-29 | 107 |
| MS.gene94264.t1 | MTR_2g070110 | 39.267 | 191 | 110 | 4 | 16 | 204 | 13 | 199 | 1.52e-28 | 107 |
| MS.gene94264.t1 | MTR_2g072120 | 46.154 | 65 | 34 | 1 | 51 | 114 | 2 | 66 | 4.27e-14 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94264.t1 | AT3G09270 | 55.455 | 220 | 94 | 4 | 3 | 219 | 2 | 220 | 1.54e-78 | 235 |
| MS.gene94264.t1 | AT2G29420 | 47.005 | 217 | 113 | 2 | 3 | 218 | 5 | 220 | 6.80e-69 | 211 |
| MS.gene94264.t1 | AT2G29490 | 49.048 | 210 | 102 | 4 | 1 | 207 | 1 | 208 | 3.58e-60 | 189 |
| MS.gene94264.t1 | AT2G29450 | 47.826 | 207 | 106 | 2 | 3 | 207 | 2 | 208 | 2.51e-58 | 184 |
| MS.gene94264.t1 | AT2G29480 | 47.368 | 209 | 107 | 3 | 1 | 207 | 1 | 208 | 4.46e-57 | 181 |
| MS.gene94264.t1 | AT2G29440 | 45.933 | 209 | 109 | 4 | 1 | 207 | 1 | 207 | 7.06e-54 | 172 |
| MS.gene94264.t1 | AT2G29460 | 44.091 | 220 | 120 | 3 | 1 | 218 | 1 | 219 | 1.05e-53 | 172 |
| MS.gene94264.t1 | AT2G29470 | 45.024 | 211 | 110 | 5 | 1 | 207 | 1 | 209 | 1.26e-52 | 169 |
| MS.gene94264.t1 | AT1G10370 | 41.629 | 221 | 120 | 3 | 1 | 214 | 1 | 219 | 1.11e-50 | 164 |
| MS.gene94264.t1 | AT1G69930 | 37.500 | 224 | 134 | 2 | 2 | 219 | 7 | 230 | 8.97e-50 | 162 |
| MS.gene94264.t1 | AT1G27130 | 39.111 | 225 | 128 | 4 | 1 | 217 | 1 | 224 | 4.73e-48 | 157 |
| MS.gene94264.t1 | AT1G59670 | 42.130 | 216 | 117 | 3 | 5 | 212 | 4 | 219 | 6.00e-48 | 157 |
| MS.gene94264.t1 | AT1G59700 | 43.119 | 218 | 116 | 4 | 5 | 214 | 4 | 221 | 1.12e-47 | 157 |
| MS.gene94264.t1 | AT1G10360 | 37.963 | 216 | 127 | 2 | 6 | 214 | 4 | 219 | 9.99e-46 | 152 |
| MS.gene94264.t1 | AT1G27140 | 37.826 | 230 | 133 | 4 | 1 | 221 | 1 | 229 | 1.47e-44 | 149 |
| MS.gene94264.t1 | AT5G62480 | 39.908 | 218 | 120 | 4 | 8 | 215 | 9 | 225 | 2.74e-44 | 148 |
| MS.gene94264.t1 | AT1G74590 | 36.818 | 220 | 132 | 3 | 1 | 214 | 1 | 219 | 3.40e-43 | 145 |
| MS.gene94264.t1 | AT1G78340 | 43.256 | 215 | 114 | 6 | 6 | 216 | 3 | 213 | 7.63e-43 | 144 |
| MS.gene94264.t1 | AT1G78380 | 41.346 | 208 | 117 | 4 | 7 | 212 | 4 | 208 | 3.59e-42 | 142 |
| MS.gene94264.t1 | AT1G78370 | 40.097 | 207 | 118 | 6 | 16 | 220 | 13 | 215 | 6.35e-42 | 142 |
| MS.gene94264.t1 | AT1G69920 | 36.842 | 228 | 134 | 4 | 1 | 218 | 26 | 253 | 1.86e-41 | 142 |
| MS.gene94264.t1 | AT1G17170 | 40.845 | 213 | 120 | 5 | 6 | 216 | 3 | 211 | 3.48e-41 | 140 |
| MS.gene94264.t1 | AT1G78320 | 41.063 | 207 | 117 | 4 | 6 | 210 | 3 | 206 | 4.51e-41 | 139 |
| MS.gene94264.t1 | AT1G53680 | 39.623 | 212 | 123 | 4 | 1 | 209 | 1 | 210 | 8.55e-40 | 136 |
| MS.gene94264.t1 | AT1G17180 | 40.191 | 209 | 120 | 5 | 6 | 212 | 3 | 208 | 4.97e-39 | 134 |
| MS.gene94264.t1 | AT1G78360 | 40.670 | 209 | 118 | 6 | 7 | 212 | 4 | 209 | 1.52e-36 | 128 |
| MS.gene94264.t1 | AT3G43800 | 38.164 | 207 | 119 | 6 | 4 | 204 | 2 | 205 | 2.52e-36 | 127 |
| MS.gene94264.t1 | AT1G17190 | 42.697 | 178 | 97 | 5 | 16 | 191 | 14 | 188 | 1.64e-34 | 122 |
| MS.gene94264.t1 | AT5G62480 | 31.797 | 217 | 113 | 4 | 8 | 215 | 9 | 199 | 6.27e-27 | 103 |
| MS.gene94264.t1 | AT5G62480 | 31.797 | 217 | 112 | 4 | 8 | 215 | 9 | 198 | 1.42e-26 | 102 |
| MS.gene94264.t1 | AT1G78320 | 33.495 | 206 | 107 | 4 | 6 | 210 | 3 | 179 | 3.07e-24 | 95.5 |
| MS.gene94264.t1 | AT2G02380 | 27.854 | 219 | 131 | 8 | 5 | 207 | 9 | 216 | 1.19e-15 | 73.6 |
| MS.gene94264.t1 | AT2G02390 | 27.149 | 221 | 134 | 6 | 3 | 207 | 4 | 213 | 1.90e-13 | 67.4 |
| MS.gene94264.t1 | AT2G02390 | 26.754 | 228 | 133 | 7 | 3 | 207 | 4 | 220 | 3.74e-12 | 63.9 |
Find 45 sgRNAs with CRISPR-Local
Find 114 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGAGCCTTGGCTCGTTTC+TGG | 0.120947 | 7.3:+40606961 | MS.gene94264:CDS |
| GCTCGTTATGAAAGTCATTT+TGG | 0.207854 | 7.3:+40608441 | MS.gene94264:CDS |
| CCAAATGCTTCTTGTATAAT+AGG | 0.242368 | 7.3:-40608297 | None:intergenic |
| TTGGGTGATTGTTGAATTCT+TGG | 0.291920 | 7.3:-40608368 | None:intergenic |
| ACAGGAACTTTCTTGTAAAC+AGG | 0.303772 | 7.3:-40606837 | None:intergenic |
| GAGCTCAAAGACAAATTCTT+TGG | 0.309252 | 7.3:+40608219 | MS.gene94264:CDS |
| TGGCTCCAATTGTAAAGCTT+TGG | 0.323925 | 7.3:-40608348 | None:intergenic |
| TAAGGATCAGAAGGCAAGAT+TGG | 0.379779 | 7.3:-40606936 | None:intergenic |
| CCTATTATACAAGAAGCATT+TGG | 0.389514 | 7.3:+40608297 | MS.gene94264:CDS |
| TTCATAACGAGCTTTGTAGA+AGG | 0.410089 | 7.3:-40608430 | None:intergenic |
| AATTTCCAAAGCTTTACAAT+TGG | 0.423886 | 7.3:+40608343 | MS.gene94264:CDS |
| ATCTCCACCCTTGTTACAAA+TGG | 0.430811 | 7.3:-40606732 | None:intergenic |
| TTCTTTGGTGGGGAGGAGAT+TGG | 0.431190 | 7.3:+40608234 | MS.gene94264:CDS |
| GCCTCCTAGAGAGACCCTTT+TGG | 0.431280 | 7.3:+40608407 | MS.gene94264:CDS |
| GGAGATTGCTCTAAAATTGA+AGG | 0.444678 | 7.3:+40606749 | MS.gene94264:CDS |
| ACAAATATGAGCAAGAAAAG+TGG | 0.463039 | 7.3:+40606781 | MS.gene94264:CDS |
| CAAATATGAGCAAGAAAAGT+GGG | 0.468083 | 7.3:+40606782 | MS.gene94264:CDS |
| TACCTTGTCATCTATGAGCT+TGG | 0.479184 | 7.3:-40606985 | None:intergenic |
| GAGCTTTGTAGAAGGCCAAA+AGG | 0.488923 | 7.3:-40608422 | None:intergenic |
| ATCACAAGTGACTCTGCTAT+AGG | 0.496284 | 7.3:-40606879 | None:intergenic |
| AAGCTTTGGAAATTCTTCAC+TGG | 0.499393 | 7.3:-40608334 | None:intergenic |
| CTCAAAGACAAATTCTTTGG+TGG | 0.503966 | 7.3:+40608222 | MS.gene94264:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7.3:+40606904 | MS.gene94264:CDS |
| CAGGAACTTTCTTGTAAACA+GGG | 0.506672 | 7.3:-40606836 | None:intergenic |
| TCAAAGACAAATTCTTTGGT+GGG | 0.523453 | 7.3:+40608223 | MS.gene94264:CDS |
| AGAACGTGAGAAGAGTATTG+AGG | 0.526929 | 7.3:+40608164 | MS.gene94264:CDS |
| AGCTTTGTAGAAGGCCAAAA+GGG | 0.545982 | 7.3:-40608421 | None:intergenic |
| TGATCCTTACAAAAGAGCCT+TGG | 0.548089 | 7.3:+40606950 | MS.gene94264:CDS |
| TGCAGTGTTTGAGTGGTGTA+CGG | 0.549609 | 7.3:+40608115 | MS.gene94264:intron |
| GAGTATTGAGGAAACAAAAG+AGG | 0.559224 | 7.3:+40608176 | MS.gene94264:CDS |
| TGGAAAGTCCATTTGTAACA+AGG | 0.573831 | 7.3:+40606724 | MS.gene94264:CDS |
| CAAAGACAAATTCTTTGGTG+GGG | 0.574827 | 7.3:+40608224 | MS.gene94264:CDS |
| AGACAAATTCTTTGGTGGGG+AGG | 0.574875 | 7.3:+40608227 | MS.gene94264:CDS |
| AAGGCCAAAAGGGTCTCTCT+AGG | 0.576747 | 7.3:-40608411 | None:intergenic |
| ATCAAATAGAGAAGAGGTGA+AGG | 0.577280 | 7.3:+40606689 | MS.gene94264:CDS |
| CAACAATCACCCAATTGTCA+AGG | 0.594522 | 7.3:+40608377 | MS.gene94264:CDS |
| GGAAAGTCCATTTGTAACAA+GGG | 0.613221 | 7.3:+40606725 | MS.gene94264:CDS |
| GAGATTGCTCTAAAATTGAA+GGG | 0.615792 | 7.3:+40606750 | MS.gene94264:CDS |
| GCCAAAAGGGTCTCTCTAGG+AGG | 0.635297 | 7.3:-40608408 | None:intergenic |
| GACCAAGCTCATAGATGACA+AGG | 0.637840 | 7.3:+40606983 | MS.gene94264:CDS |
| AAGTCCATTTGTAACAAGGG+TGG | 0.642673 | 7.3:+40606728 | MS.gene94264:CDS |
| GATGGCATCAAATAGAGAAG+AGG | 0.646080 | 7.3:+40606683 | None:intergenic |
| AAATATGAGCAAGAAAAGTG+GGG | 0.651396 | 7.3:+40606783 | MS.gene94264:CDS |
| AATATGAGCAAGAAAAGTGG+GGG | 0.666891 | 7.3:+40606784 | MS.gene94264:CDS |
| CTTGGTCCAGAAACGAGCCA+AGG | 0.675346 | 7.3:-40606967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TCATTAATTTGTTTTTATAT+AGG | - | chr7.3:40608063-40608082 | None:intergenic | 10.0% |
| !! | AAAATTAGTATATAAGATGT+TGG | - | chr7.3:40607378-40607397 | None:intergenic | 15.0% |
| !! | GGAAAAAAAAAATAAAAACA+TGG | - | chr7.3:40607126-40607145 | None:intergenic | 15.0% |
| !! | TGTACATTAATAGAAAAATA+TGG | + | chr7.3:40607404-40607423 | MS.gene94264:intron | 15.0% |
| !! | TTATCATTATGAATAAAAAC+AGG | - | chr7.3:40606858-40606877 | None:intergenic | 15.0% |
| !!! | TATCATTTAAAATGAAACAA+AGG | + | chr7.3:40607466-40607485 | MS.gene94264:intron | 15.0% |
| !!! | TCATTTTAAATGATATACTT+TGG | - | chr7.3:40607461-40607480 | None:intergenic | 15.0% |
| !!! | TTATGCATTTTAGAAAAATA+TGG | - | chr7.3:40607276-40607295 | None:intergenic | 15.0% |
| !!! | TTTATATAGGAAGTTTTATA+TGG | - | chr7.3:40608050-40608069 | None:intergenic | 15.0% |
| !! | ATTAACTTATGTTAATTGCT+AGG | - | chr7.3:40607957-40607976 | None:intergenic | 20.0% |
| !! | TATTTAATGCTAACTAAAGT+TGG | - | chr7.3:40607063-40607082 | None:intergenic | 20.0% |
| !! | TTAACTTATGTTAATTGCTA+GGG | - | chr7.3:40607956-40607975 | None:intergenic | 20.0% |
| ! | AATTTCCAAAGCTTTACAAT+TGG | + | chr7.3:40608343-40608362 | MS.gene94264:CDS | 25.0% |
| ! | ATAGAAAGAAGTTTAGAAGA+AGG | - | chr7.3:40608013-40608032 | None:intergenic | 25.0% |
| ! | ATGAAACTAATCATATGAGT+AGG | - | chr7.3:40607884-40607903 | None:intergenic | 25.0% |
| ! | TAAAGTTGGATATTTGAACT+TGG | - | chr7.3:40607049-40607068 | None:intergenic | 25.0% |
| ! | TACACAAAGAAAATAGAAGA+GGG | - | chr7.3:40607018-40607037 | None:intergenic | 25.0% |
| ! | TTACACAAAGAAAATAGAAG+AGG | - | chr7.3:40607019-40607038 | None:intergenic | 25.0% |
| !! | ATTTTTAATGCGAAAAGTTC+AGG | - | chr7.3:40607654-40607673 | None:intergenic | 25.0% |
| !! | GTAAGTAAATTTGAGATCTT+AGG | + | chr7.3:40607088-40607107 | MS.gene94264:intron | 25.0% |
| !! | TACTTGCAAATTAGTTTATG+TGG | - | chr7.3:40607827-40607846 | None:intergenic | 25.0% |
| !! | TTTTTAATGCGAAAAGTTCA+GGG | - | chr7.3:40607653-40607672 | None:intergenic | 25.0% |
| AAATATGAGCAAGAAAAGTG+GGG | + | chr7.3:40606783-40606802 | MS.gene94264:CDS | 30.0% | |
| AATCCAAAAAGCTATGAGTA+CGG | - | chr7.3:40608277-40608296 | None:intergenic | 30.0% | |
| ACAAATATGAGCAAGAAAAG+TGG | + | chr7.3:40606781-40606800 | MS.gene94264:CDS | 30.0% | |
| ACACAAAGAAAATAGAAGAG+GGG | - | chr7.3:40607017-40607036 | None:intergenic | 30.0% | |
| AGAGCTAACACAATTAAATG+TGG | + | chr7.3:40607162-40607181 | MS.gene94264:intron | 30.0% | |
| CAAATATGAGCAAGAAAAGT+GGG | + | chr7.3:40606782-40606801 | MS.gene94264:CDS | 30.0% | |
| CCAAATGCTTCTTGTATAAT+AGG | - | chr7.3:40608300-40608319 | None:intergenic | 30.0% | |
| TCAAAGACAAATTCTTTGGT+GGG | + | chr7.3:40608223-40608242 | MS.gene94264:CDS | 30.0% | |
| TTATACTTAGAGAGAACATG+TGG | - | chr7.3:40607570-40607589 | None:intergenic | 30.0% | |
| TTATGTTAATTGCTAGGGTA+AGG | - | chr7.3:40607951-40607970 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | + | chr7.3:40606904-40606923 | MS.gene94264:CDS | 30.0% | |
| ! | CACTCAACAATTTTACATCT+TGG | + | chr7.3:40607532-40607551 | MS.gene94264:intron | 30.0% |
| ! | CTAATCATATGAGTAGGTTT+TGG | - | chr7.3:40607878-40607897 | None:intergenic | 30.0% |
| ! | TTTATGTGGCTCATTTTCAT+TGG | - | chr7.3:40607813-40607832 | None:intergenic | 30.0% |
| ! | TTTTAATGCGAAAAGTTCAG+GGG | - | chr7.3:40607652-40607671 | None:intergenic | 30.0% |
| !! | CCTATTATACAAGAAGCATT+TGG | + | chr7.3:40608297-40608316 | MS.gene94264:CDS | 30.0% |
| !! | GAGATTGCTCTAAAATTGAA+GGG | + | chr7.3:40606750-40606769 | MS.gene94264:CDS | 30.0% |
| !!! | ATATGAGTAGGTTTTGGAAA+TGG | - | chr7.3:40607872-40607891 | None:intergenic | 30.0% |
| AAGTTATCCACAACTCTTCA+AGG | + | chr7.3:40607915-40607934 | MS.gene94264:intron | 35.0% | |
| AATATGAGCAAGAAAAGTGG+GGG | + | chr7.3:40606784-40606803 | MS.gene94264:CDS | 35.0% | |
| ACAGGAACTTTCTTGTAAAC+AGG | - | chr7.3:40606840-40606859 | None:intergenic | 35.0% | |
| AGTTATCCACAACTCTTCAA+GGG | + | chr7.3:40607916-40607935 | MS.gene94264:intron | 35.0% | |
| ATCAAATAGAGAAGAGGTGA+AGG | + | chr7.3:40606689-40606708 | MS.gene94264:CDS | 35.0% | |
| CAAAGACAAATTCTTTGGTG+GGG | + | chr7.3:40608224-40608243 | MS.gene94264:CDS | 35.0% | |
| CAATTAAATGTGGAGAAGTG+AGG | + | chr7.3:40607172-40607191 | MS.gene94264:intron | 35.0% | |
| CAGGAACTTTCTTGTAAACA+GGG | - | chr7.3:40606839-40606858 | None:intergenic | 35.0% | |
| CTCAAAGACAAATTCTTTGG+TGG | + | chr7.3:40608222-40608241 | MS.gene94264:CDS | 35.0% | |
| GAGCTCAAAGACAAATTCTT+TGG | + | chr7.3:40608219-40608238 | MS.gene94264:CDS | 35.0% | |
| GGAAAGTCCATTTGTAACAA+GGG | + | chr7.3:40606725-40606744 | MS.gene94264:CDS | 35.0% | |
| GGATATTGCATGTTATATGC+AGG | - | chr7.3:40607221-40607240 | None:intergenic | 35.0% | |
| TGGAAAGTCCATTTGTAACA+AGG | + | chr7.3:40606724-40606743 | MS.gene94264:CDS | 35.0% | |
| TTGGGTGATTGTTGAATTCT+TGG | - | chr7.3:40608371-40608390 | None:intergenic | 35.0% | |
| ! | GCAGTTTTTCCTTGACAATT+GGG | - | chr7.3:40608389-40608408 | None:intergenic | 35.0% |
| ! | GCTCGTTATGAAAGTCATTT+TGG | + | chr7.3:40608441-40608460 | MS.gene94264:CDS | 35.0% |
| ! | TTCATAACGAGCTTTGTAGA+AGG | - | chr7.3:40608433-40608452 | None:intergenic | 35.0% |
| ! | TTCTTTTTGCAGTGTTTGAG+TGG | + | chr7.3:40608108-40608127 | MS.gene94264:intron | 35.0% |
| !! | AAGCTTTGGAAATTCTTCAC+TGG | - | chr7.3:40608337-40608356 | None:intergenic | 35.0% |
| !! | GAGTATTGAGGAAACAAAAG+AGG | + | chr7.3:40608176-40608195 | MS.gene94264:CDS | 35.0% |
| !! | GGAGATTGCTCTAAAATTGA+AGG | + | chr7.3:40606749-40606768 | MS.gene94264:CDS | 35.0% |
| !!! | TTTTTTTCCAAGTAGCCTAG+TGG | + | chr7.3:40607137-40607156 | MS.gene94264:intron | 35.0% |
| AAGTCCATTTGTAACAAGGG+TGG | + | chr7.3:40606728-40606747 | MS.gene94264:CDS | 40.0% | |
| ATAGAGGAGAGATGTGAGTT+GGG | + | chr7.3:40607614-40607633 | MS.gene94264:intron | 40.0% | |
| ATCACAAGTGACTCTGCTAT+AGG | - | chr7.3:40606882-40606901 | None:intergenic | 40.0% | |
| ATCTCCACCCTTGTTACAAA+TGG | - | chr7.3:40606735-40606754 | None:intergenic | 40.0% | |
| CAACAATCACCCAATTGTCA+AGG | + | chr7.3:40608377-40608396 | MS.gene94264:CDS | 40.0% | |
| GAGATCTTAGGTGTGTCTTT+CGG | + | chr7.3:40607100-40607119 | MS.gene94264:intron | 40.0% | |
| GAGATGAGAAGTCAAGATAG+AGG | + | chr7.3:40607598-40607617 | MS.gene94264:intron | 40.0% | |
| TAAGGATCAGAAGGCAAGAT+TGG | - | chr7.3:40606939-40606958 | None:intergenic | 40.0% | |
| TACCAATTGAGCTAAGGTCA+CGG | + | chr7.3:40607242-40607261 | MS.gene94264:intron | 40.0% | |
| TACCTTGTCATCTATGAGCT+TGG | - | chr7.3:40606988-40607007 | None:intergenic | 40.0% | |
| TATCCCTACCAATTGAGCTA+AGG | + | chr7.3:40607236-40607255 | MS.gene94264:intron | 40.0% | |
| TGACCTTAGCTCAATTGGTA+GGG | - | chr7.3:40607242-40607261 | None:intergenic | 40.0% | |
| TGATCCTTACAAAAGAGCCT+TGG | + | chr7.3:40606950-40606969 | MS.gene94264:CDS | 40.0% | |
| TGGCTCCAATTGTAAAGCTT+TGG | - | chr7.3:40608351-40608370 | None:intergenic | 40.0% | |
| ! | ACTCTTCTTTGAGAAGAGAG+TGG | - | chr7.3:40607685-40607704 | None:intergenic | 40.0% |
| ! | AGAGAAGAGGTGAAGGTTTT+TGG | + | chr7.3:40606696-40606715 | MS.gene94264:CDS | 40.0% |
| ! | AGCTTTGTAGAAGGCCAAAA+GGG | - | chr7.3:40608424-40608443 | None:intergenic | 40.0% |
| ! | GCTCTTTTGTAAGGATCAGA+AGG | - | chr7.3:40606948-40606967 | None:intergenic | 40.0% |
| ! | GGCAGTTTTTCCTTGACAAT+TGG | - | chr7.3:40608390-40608409 | None:intergenic | 40.0% |
| !! | AGAACGTGAGAAGAGTATTG+AGG | + | chr7.3:40608164-40608183 | MS.gene94264:CDS | 40.0% |
| !! | AGAGGTGAAGGTTTTTGGAT+TGG | + | chr7.3:40606701-40606720 | MS.gene94264:CDS | 40.0% |
| !! | TTGTGTTAGCTCTAACCACT+AGG | - | chr7.3:40607155-40607174 | None:intergenic | 40.0% |
| ACCAATTGAGCTAAGGTCAC+GGG | + | chr7.3:40607243-40607262 | MS.gene94264:intron | 45.0% | |
| AGACAAATTCTTTGGTGGGG+AGG | + | chr7.3:40608227-40608246 | MS.gene94264:CDS | 45.0% | |
| GACCAAGCTCATAGATGACA+AGG | + | chr7.3:40606983-40607002 | MS.gene94264:CDS | 45.0% | |
| GATAGAGGAGAGATGTGAGT+TGG | + | chr7.3:40607613-40607632 | MS.gene94264:intron | 45.0% | |
| GTGACCTTAGCTCAATTGGT+AGG | - | chr7.3:40607243-40607262 | None:intergenic | 45.0% | |
| TATCCACAACTCTTCAAGGG+TGG | + | chr7.3:40607919-40607938 | MS.gene94264:intron | 45.0% | |
| TGCAGTGTTTGAGTGGTGTA+CGG | + | chr7.3:40608115-40608134 | MS.gene94264:intron | 45.0% | |
| TGCATGTTATATGCAGGAGC+CGG | - | chr7.3:40607215-40607234 | None:intergenic | 45.0% | |
| ! | CTGCCGTACTCATAGCTTTT+TGG | + | chr7.3:40608271-40608290 | MS.gene94264:CDS | 45.0% |
| ! | GAGCTTTGTAGAAGGCCAAA+AGG | - | chr7.3:40608425-40608444 | None:intergenic | 45.0% |
| !! | GGTGAAGGTTTTTGGATTGG+TGG | + | chr7.3:40606704-40606723 | MS.gene94264:CDS | 45.0% |
| AAGGCCAAAAGGGTCTCTCT+AGG | - | chr7.3:40608414-40608433 | None:intergenic | 50.0% | |
| ATGCCACCCTTGAAGAGTTG+TGG | - | chr7.3:40607925-40607944 | None:intergenic | 50.0% | |
| CATGTTATATGCAGGAGCCG+GGG | - | chr7.3:40607213-40607232 | None:intergenic | 50.0% | |
| GAGCTAAGGTCACGGGAATT+GGG | + | chr7.3:40607250-40607269 | MS.gene94264:intron | 50.0% | |
| GCATGTTATATGCAGGAGCC+GGG | - | chr7.3:40607214-40607233 | None:intergenic | 50.0% | |
| GCTCTAACCACTAGGCTACT+TGG | - | chr7.3:40607147-40607166 | None:intergenic | 50.0% | |
| TCCCGTGACCTTAGCTCAAT+TGG | - | chr7.3:40607247-40607266 | None:intergenic | 50.0% | |
| TGAGCTAAGGTCACGGGAAT+TGG | + | chr7.3:40607249-40607268 | MS.gene94264:intron | 50.0% | |
| TTCTTTGGTGGGGAGGAGAT+TGG | + | chr7.3:40608234-40608253 | MS.gene94264:CDS | 50.0% | |
| ! | AAAGAGCCTTGGCTCGTTTC+TGG | + | chr7.3:40606961-40606980 | MS.gene94264:CDS | 50.0% |
| ! | ATGTGGAGAAGTGAGGTGTC+TGG | + | chr7.3:40607179-40607198 | MS.gene94264:intron | 50.0% |
| ! | CGAGCCAAGGCTCTTTTGTA+AGG | - | chr7.3:40606957-40606976 | None:intergenic | 50.0% |
| ! | TGTGGAGAAGTGAGGTGTCT+GGG | + | chr7.3:40607180-40607199 | MS.gene94264:intron | 50.0% |
| CTTGGTCCAGAAACGAGCCA+AGG | - | chr7.3:40606970-40606989 | None:intergenic | 55.0% | |
| GCCAAAAGGGTCTCTCTAGG+AGG | - | chr7.3:40608411-40608430 | None:intergenic | 55.0% | |
| ! | GAGGAGAGATGTGAGTTGGG+TGG | + | chr7.3:40607617-40607636 | MS.gene94264:intron | 55.0% |
| ! | GCCTCCTAGAGAGACCCTTT+TGG | + | chr7.3:40608407-40608426 | MS.gene94264:CDS | 55.0% |
| ! | GTGGAGAAGTGAGGTGTCTG+GGG | + | chr7.3:40607181-40607200 | MS.gene94264:intron | 55.0% |
| ! | GGTGTCTGGGGTTCGAACCC+CGG | + | chr7.3:40607193-40607212 | MS.gene94264:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 40606684 | 40608473 | 40606684 | ID=MS.gene94264 |
| chr7.3 | mRNA | 40606684 | 40608473 | 40606684 | ID=MS.gene94264.t1;Parent=MS.gene94264 |
| chr7.3 | exon | 40606684 | 40607004 | 40606684 | ID=MS.gene94264.t1.exon1;Parent=MS.gene94264.t1 |
| chr7.3 | CDS | 40606684 | 40607004 | 40606684 | ID=cds.MS.gene94264.t1;Parent=MS.gene94264.t1 |
| chr7.3 | exon | 40608120 | 40608473 | 40608120 | ID=MS.gene94264.t1.exon2;Parent=MS.gene94264.t1 |
| chr7.3 | CDS | 40608120 | 40608473 | 40608120 | ID=cds.MS.gene94264.t1;Parent=MS.gene94264.t1 |
| Gene Sequence |
| Protein sequence |
