Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94271.t1 | XP_003623199.1 | 97.5 | 239 | 6 | 0 | 1 | 239 | 1 | 239 | 2.90E-127 | 464.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94271.t1 | P32110 | 72.6 | 223 | 56 | 2 | 19 | 236 | 1 | 223 | 2.3e-85 | 316.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94271.t1 | G7L6H3 | 97.5 | 239 | 6 | 0 | 1 | 239 | 1 | 239 | 2.1e-127 | 464.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055144 | MS.gene94271 | 0.833875 | 4.15E-56 | -1.69E-46 |
| MS.gene05894 | MS.gene94271 | 0.803363 | 3.61E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94271.t1 | MTR_7g065630 | 97.490 | 239 | 6 | 0 | 1 | 239 | 1 | 239 | 2.90e-173 | 476 |
| MS.gene94271.t1 | MTR_7g065680 | 83.710 | 221 | 36 | 0 | 19 | 239 | 1 | 221 | 1.05e-128 | 363 |
| MS.gene94271.t1 | MTR_7g065710 | 77.833 | 203 | 45 | 0 | 26 | 228 | 5 | 207 | 1.21e-117 | 335 |
| MS.gene94271.t1 | MTR_7g065700 | 80.952 | 210 | 40 | 0 | 19 | 228 | 1 | 210 | 2.07e-117 | 334 |
| MS.gene94271.t1 | MTR_7g065590 | 68.018 | 222 | 67 | 1 | 19 | 236 | 1 | 222 | 6.39e-110 | 315 |
| MS.gene94271.t1 | MTR_7g065230 | 71.560 | 218 | 61 | 1 | 19 | 236 | 1 | 217 | 1.01e-107 | 310 |
| MS.gene94271.t1 | MTR_7g065600 | 68.018 | 222 | 67 | 1 | 19 | 236 | 1 | 222 | 5.58e-106 | 305 |
| MS.gene94271.t1 | MTR_7g065660 | 66.667 | 225 | 71 | 1 | 19 | 239 | 1 | 225 | 2.42e-105 | 304 |
| MS.gene94271.t1 | MTR_7g065720 | 68.778 | 221 | 64 | 2 | 19 | 234 | 1 | 221 | 6.45e-104 | 300 |
| MS.gene94271.t1 | MTR_7g065290 | 67.123 | 219 | 68 | 1 | 19 | 233 | 1 | 219 | 2.29e-103 | 299 |
| MS.gene94271.t1 | MTR_7g065265 | 66.972 | 218 | 68 | 1 | 19 | 232 | 1 | 218 | 7.61e-100 | 290 |
| MS.gene94271.t1 | MTR_7g065740 | 62.832 | 226 | 79 | 2 | 19 | 239 | 1 | 226 | 2.93e-99 | 288 |
| MS.gene94271.t1 | MTR_7g065750 | 63.717 | 226 | 77 | 2 | 19 | 239 | 1 | 226 | 5.65e-97 | 283 |
| MS.gene94271.t1 | MTR_7g065270 | 63.761 | 218 | 75 | 1 | 19 | 232 | 1 | 218 | 1.76e-96 | 281 |
| MS.gene94271.t1 | MTR_7g065640 | 63.801 | 221 | 66 | 1 | 19 | 239 | 1 | 207 | 1.23e-95 | 278 |
| MS.gene94271.t1 | MTR_4g019790 | 60.444 | 225 | 85 | 1 | 19 | 239 | 1 | 225 | 3.44e-93 | 273 |
| MS.gene94271.t1 | MTR_7g065260 | 64.732 | 224 | 74 | 2 | 18 | 236 | 7 | 230 | 8.50e-92 | 270 |
| MS.gene94271.t1 | MTR_4g019780 | 61.187 | 219 | 79 | 3 | 18 | 231 | 1 | 218 | 2.16e-91 | 268 |
| MS.gene94271.t1 | MTR_3g099757 | 47.748 | 222 | 110 | 3 | 22 | 238 | 2 | 222 | 3.31e-61 | 192 |
| MS.gene94271.t1 | MTR_6g080440 | 47.115 | 208 | 104 | 3 | 25 | 227 | 3 | 209 | 4.12e-61 | 191 |
| MS.gene94271.t1 | MTR_8g087410 | 42.534 | 221 | 121 | 3 | 24 | 239 | 5 | 224 | 3.49e-57 | 181 |
| MS.gene94271.t1 | MTR_5g040430 | 40.991 | 222 | 119 | 4 | 19 | 229 | 1 | 221 | 1.52e-55 | 177 |
| MS.gene94271.t1 | MTR_8g087425 | 43.119 | 218 | 118 | 3 | 22 | 234 | 2 | 218 | 3.37e-55 | 176 |
| MS.gene94271.t1 | MTR_1g090070 | 42.986 | 221 | 119 | 2 | 25 | 238 | 9 | 229 | 4.71e-55 | 176 |
| MS.gene94271.t1 | MTR_1g090150 | 43.636 | 220 | 115 | 4 | 24 | 236 | 2 | 219 | 1.23e-54 | 175 |
| MS.gene94271.t1 | MTR_1g090060 | 40.724 | 221 | 119 | 4 | 25 | 236 | 3 | 220 | 8.27e-51 | 165 |
| MS.gene94271.t1 | MTR_1g115195 | 41.475 | 217 | 116 | 5 | 25 | 232 | 3 | 217 | 5.23e-49 | 160 |
| MS.gene94271.t1 | MTR_1g090100 | 40.741 | 216 | 120 | 3 | 26 | 234 | 3 | 217 | 2.46e-48 | 159 |
| MS.gene94271.t1 | MTR_4g059730 | 39.535 | 215 | 118 | 4 | 24 | 229 | 3 | 214 | 4.59e-48 | 158 |
| MS.gene94271.t1 | MTR_5g037380 | 40.444 | 225 | 122 | 4 | 22 | 234 | 2 | 226 | 4.15e-47 | 156 |
| MS.gene94271.t1 | MTR_2g070130 | 40.000 | 205 | 114 | 5 | 24 | 222 | 3 | 204 | 6.59e-45 | 150 |
| MS.gene94271.t1 | MTR_1g090090 | 39.713 | 209 | 118 | 3 | 25 | 226 | 3 | 210 | 1.10e-44 | 149 |
| MS.gene94271.t1 | MTR_2g070150 | 39.024 | 205 | 116 | 5 | 24 | 222 | 3 | 204 | 1.84e-43 | 145 |
| MS.gene94271.t1 | MTR_4g124130 | 46.316 | 190 | 92 | 6 | 23 | 205 | 2 | 188 | 1.07e-42 | 144 |
| MS.gene94271.t1 | MTR_8g061950 | 39.545 | 220 | 121 | 5 | 22 | 229 | 2 | 221 | 4.94e-42 | 143 |
| MS.gene94271.t1 | MTR_2g070210 | 38.389 | 211 | 119 | 6 | 24 | 226 | 3 | 210 | 9.77e-42 | 142 |
| MS.gene94271.t1 | MTR_3g467420 | 39.810 | 211 | 122 | 5 | 20 | 226 | 4 | 213 | 8.66e-41 | 139 |
| MS.gene94271.t1 | MTR_2g070140 | 37.436 | 195 | 113 | 5 | 38 | 226 | 1 | 192 | 1.08e-40 | 139 |
| MS.gene94271.t1 | MTR_8g056940 | 44.624 | 186 | 98 | 5 | 24 | 205 | 3 | 187 | 1.36e-40 | 139 |
| MS.gene94271.t1 | MTR_2g070120 | 37.438 | 203 | 122 | 4 | 24 | 222 | 3 | 204 | 2.10e-40 | 138 |
| MS.gene94271.t1 | MTR_2g070180 | 37.073 | 205 | 120 | 5 | 24 | 222 | 3 | 204 | 8.04e-40 | 137 |
| MS.gene94271.t1 | MTR_2g070200 | 37.619 | 210 | 122 | 5 | 24 | 226 | 3 | 210 | 1.34e-39 | 136 |
| MS.gene94271.t1 | MTR_3g467430 | 37.441 | 211 | 123 | 5 | 22 | 226 | 6 | 213 | 2.58e-38 | 133 |
| MS.gene94271.t1 | MTR_2g070070 | 36.866 | 217 | 128 | 5 | 25 | 235 | 4 | 217 | 3.14e-38 | 133 |
| MS.gene94271.t1 | MTR_2g070060 | 37.500 | 208 | 119 | 6 | 25 | 226 | 4 | 206 | 3.44e-37 | 130 |
| MS.gene94271.t1 | MTR_5g076900 | 39.130 | 207 | 121 | 5 | 24 | 226 | 5 | 210 | 4.04e-37 | 130 |
| MS.gene94271.t1 | MTR_0186s0030 | 47.101 | 138 | 71 | 2 | 24 | 160 | 3 | 139 | 6.22e-35 | 122 |
| MS.gene94271.t1 | MTR_2g070110 | 36.866 | 217 | 127 | 6 | 25 | 235 | 4 | 216 | 1.09e-34 | 124 |
| MS.gene94271.t1 | MTR_2g072120 | 39.130 | 69 | 40 | 2 | 69 | 136 | 2 | 69 | 5.99e-13 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94271.t1 | AT2G29420 | 47.085 | 223 | 112 | 3 | 21 | 238 | 5 | 226 | 1.65e-68 | 210 |
| MS.gene94271.t1 | AT3G09270 | 49.321 | 221 | 104 | 5 | 23 | 236 | 4 | 223 | 8.62e-65 | 201 |
| MS.gene94271.t1 | AT2G29450 | 44.144 | 222 | 118 | 3 | 21 | 236 | 2 | 223 | 2.37e-58 | 184 |
| MS.gene94271.t1 | AT2G29490 | 45.333 | 225 | 114 | 5 | 19 | 236 | 1 | 223 | 1.05e-56 | 180 |
| MS.gene94271.t1 | AT2G29460 | 45.089 | 224 | 116 | 4 | 19 | 236 | 1 | 223 | 2.39e-56 | 179 |
| MS.gene94271.t1 | AT2G29480 | 45.536 | 224 | 112 | 5 | 19 | 233 | 1 | 223 | 5.63e-56 | 178 |
| MS.gene94271.t1 | AT2G29440 | 43.379 | 219 | 117 | 4 | 24 | 236 | 5 | 222 | 1.07e-52 | 170 |
| MS.gene94271.t1 | AT2G29470 | 43.519 | 216 | 114 | 5 | 19 | 227 | 1 | 215 | 2.71e-52 | 169 |
| MS.gene94271.t1 | AT1G59670 | 43.750 | 224 | 111 | 7 | 24 | 232 | 5 | 228 | 3.27e-49 | 161 |
| MS.gene94271.t1 | AT1G59700 | 44.348 | 230 | 113 | 7 | 24 | 238 | 5 | 234 | 3.18e-48 | 159 |
| MS.gene94271.t1 | AT1G10370 | 43.662 | 213 | 103 | 7 | 19 | 218 | 1 | 209 | 3.06e-47 | 156 |
| MS.gene94271.t1 | AT1G27130 | 40.991 | 222 | 119 | 6 | 21 | 230 | 2 | 223 | 1.74e-46 | 154 |
| MS.gene94271.t1 | AT1G69930 | 40.351 | 228 | 118 | 7 | 17 | 228 | 2 | 227 | 1.65e-45 | 152 |
| MS.gene94271.t1 | AT1G27140 | 37.885 | 227 | 124 | 5 | 21 | 232 | 2 | 226 | 1.29e-44 | 150 |
| MS.gene94271.t1 | AT1G78320 | 40.777 | 206 | 113 | 5 | 23 | 222 | 2 | 204 | 4.69e-44 | 148 |
| MS.gene94271.t1 | AT1G10360 | 40.670 | 209 | 111 | 6 | 22 | 218 | 2 | 209 | 2.56e-43 | 146 |
| MS.gene94271.t1 | AT1G78340 | 49.032 | 155 | 76 | 3 | 24 | 176 | 3 | 156 | 4.91e-43 | 145 |
| MS.gene94271.t1 | AT1G17180 | 41.872 | 203 | 113 | 5 | 24 | 222 | 3 | 204 | 6.78e-43 | 145 |
| MS.gene94271.t1 | AT1G78370 | 39.409 | 203 | 118 | 5 | 28 | 226 | 7 | 208 | 2.58e-41 | 140 |
| MS.gene94271.t1 | AT5G62480 | 37.719 | 228 | 126 | 6 | 23 | 235 | 6 | 232 | 5.92e-41 | 140 |
| MS.gene94271.t1 | AT1G78380 | 39.706 | 204 | 114 | 5 | 25 | 222 | 4 | 204 | 1.93e-40 | 138 |
| MS.gene94271.t1 | AT1G17170 | 37.615 | 218 | 126 | 5 | 24 | 235 | 3 | 216 | 2.38e-40 | 138 |
| MS.gene94271.t1 | AT1G53680 | 38.389 | 211 | 125 | 5 | 19 | 224 | 1 | 211 | 1.05e-38 | 134 |
| MS.gene94271.t1 | AT1G69920 | 36.967 | 211 | 121 | 5 | 21 | 219 | 30 | 240 | 2.40e-38 | 134 |
| MS.gene94271.t1 | AT1G17190 | 37.321 | 209 | 126 | 5 | 22 | 226 | 2 | 209 | 2.21e-37 | 130 |
| MS.gene94271.t1 | AT3G43800 | 37.864 | 206 | 119 | 7 | 22 | 219 | 2 | 206 | 3.06e-37 | 130 |
| MS.gene94271.t1 | AT1G78360 | 38.073 | 218 | 116 | 8 | 19 | 226 | 1 | 209 | 7.93e-37 | 129 |
| MS.gene94271.t1 | AT1G74590 | 34.091 | 220 | 134 | 4 | 19 | 228 | 1 | 219 | 3.99e-35 | 125 |
| MS.gene94271.t1 | AT1G78320 | 33.659 | 205 | 102 | 5 | 23 | 222 | 2 | 177 | 6.93e-28 | 105 |
| MS.gene94271.t1 | AT5G62480 | 29.956 | 227 | 119 | 6 | 23 | 235 | 6 | 206 | 2.86e-23 | 94.0 |
| MS.gene94271.t1 | AT5G62480 | 29.956 | 227 | 118 | 6 | 23 | 235 | 6 | 205 | 3.87e-23 | 93.6 |
| MS.gene94271.t1 | AT2G02380 | 26.667 | 210 | 139 | 6 | 23 | 220 | 9 | 215 | 3.96e-11 | 61.2 |
Find 46 sgRNAs with CRISPR-Local
Find 55 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAATACAATCCAGTTTAC+AGG | 0.242467 | 7.3:-40529766 | MS.gene94271:CDS |
| AAAGAGCTTTGGCTCGTTTC+TGG | 0.246122 | 7.3:-40529631 | MS.gene94271:CDS |
| GGCATAATTTCCTTGACTAT+TGG | 0.252367 | 7.3:+40529124 | None:intergenic |
| TTCTCGCGTTCTTTCTTATC+AGG | 0.258670 | 7.3:+40529346 | None:intergenic |
| TCTGCTACTTCTTGGAATAA+AGG | 0.300241 | 7.3:+40529214 | None:intergenic |
| GAATTGAAGGGAAAATTCTT+TGG | 0.311076 | 7.3:-40529280 | MS.gene94271:CDS |
| TTACTCCATTTGTATAGCTT+TGG | 0.321457 | 7.3:+40529163 | None:intergenic |
| ACTGCAACTCTGCTACTTCT+TGG | 0.329911 | 7.3:+40529206 | None:intergenic |
| TGAGGAAGAAGTGAAGCTTT+TGG | 0.359834 | 7.3:-40529897 | MS.gene94271:CDS |
| ACAGGAACCATCCTGTAAAC+TGG | 0.376294 | 7.3:+40529755 | None:intergenic |
| CTGCTACTTCTTGGAATAAA+GGG | 0.379143 | 7.3:+40529215 | None:intergenic |
| TTCTTTGGAGGAGAAGAGAT+TGG | 0.382580 | 7.3:-40529265 | MS.gene94271:CDS |
| TAAGGATCATTCGGCAAGAT+AGG | 0.387197 | 7.3:+40529656 | None:intergenic |
| ATTTGTACTCTAATGACAAA+TGG | 0.390168 | 7.3:+40529860 | None:intergenic |
| AGGTGTTGAATACAAATATT+CGG | 0.435743 | 7.3:-40529822 | MS.gene94271:CDS |
| TTGCAACACTCTCTTGACTT+TGG | 0.436843 | 7.3:+40529943 | None:intergenic |
| TTTGTACTCTAATGACAAAT+GGG | 0.440845 | 7.3:+40529861 | None:intergenic |
| GCTCTTTGATAAGGATCATT+CGG | 0.444142 | 7.3:+40529647 | None:intergenic |
| CGAGCCAAAGCTCTTTGATA+AGG | 0.454417 | 7.3:+40529638 | None:intergenic |
| TACCTTGTCATCAATGAACT+TGG | 0.454791 | 7.3:+40529607 | None:intergenic |
| TGATCCTTATCAAAGAGCTT+TGG | 0.457027 | 7.3:-40529642 | MS.gene94271:CDS |
| AGCTAGTGAAGAATTATTGA+AGG | 0.477972 | 7.3:-40529323 | MS.gene94271:CDS |
| GTTTCTTGAGAATGAATTGA+AGG | 0.483369 | 7.3:-40529293 | MS.gene94271:CDS |
| TTGAAGGGAAAATTCTTTGG+AGG | 0.490147 | 7.3:-40529277 | MS.gene94271:CDS |
| AACCGAGAACTCTACTTTGA+CGG | 0.490365 | 7.3:+40529046 | None:intergenic |
| AAGAGAGTGTTGCAAGGCTA+TGG | 0.501914 | 7.3:-40529935 | MS.gene94271:CDS |
| TTGAGTATATTGATGAGACT+TGG | 0.504629 | 7.3:-40529688 | MS.gene94271:CDS |
| CAGAGTTGCAGTTGTTCACA+AGG | 0.505322 | 7.3:-40529195 | MS.gene94271:CDS |
| CATTAGAGTACAAATTGCGC+TGG | 0.508632 | 7.3:-40529852 | MS.gene94271:CDS |
| AATTTCCAAAGCTATACAAA+TGG | 0.517213 | 7.3:-40529168 | MS.gene94271:CDS |
| TAATTTCCTTGACTATTGGA+TGG | 0.528427 | 7.3:+40529128 | None:intergenic |
| TTTCTTGAGAATGAATTGAA+GGG | 0.537549 | 7.3:-40529292 | MS.gene94271:CDS |
| TGGTGTGATGGCTGCATCTG+AGG | 0.543201 | 7.3:-40529915 | MS.gene94271:CDS |
| CAAATTGCGCTGGAATTGAA+AGG | 0.571874 | 7.3:-40529842 | MS.gene94271:CDS |
| ATCAGTGTGTGGCTGCTGCA+TGG | 0.573197 | 7.3:-40529384 | MS.gene94271:intron |
| GTTGCAAGGCTATGGTGTGA+TGG | 0.586111 | 7.3:-40529927 | MS.gene94271:CDS |
| ATCACACGAGACTCCGAGAT+GGG | 0.589789 | 7.3:+40529713 | None:intergenic |
| GTCCAAGTTCATTGATGACA+AGG | 0.593054 | 7.3:-40529609 | MS.gene94271:intron |
| TGTGGCTGCTGCATGGATGT+CGG | 0.602873 | 7.3:-40529377 | MS.gene94271:CDS |
| AATCACACGAGACTCCGAGA+TGG | 0.605388 | 7.3:+40529712 | None:intergenic |
| TAACAACCATCCAATAGTCA+AGG | 0.609813 | 7.3:-40529134 | MS.gene94271:CDS |
| ATACAATCCAGTTTACAGGA+TGG | 0.639625 | 7.3:-40529762 | MS.gene94271:CDS |
| TCATAATGGAAATCCCATCT+CGG | 0.646463 | 7.3:-40529726 | MS.gene94271:CDS |
| TCTACTTTGACGGCGCAGCA+AGG | 0.649280 | 7.3:+40529056 | None:intergenic |
| AGAGTTGCAGTTGTTCACAA+GGG | 0.660025 | 7.3:-40529194 | MS.gene94271:CDS |
| AAAGTCAAGAGAGTGTTGCA+AGG | 0.691124 | 7.3:-40529941 | MS.gene94271:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAATATTCGGAAGAAAAATT+GGG | - | chr7.3:40529210-40529229 | MS.gene94271:CDS | 20.0% |
| ! | AATTTCCAAAGCTATACAAA+TGG | - | chr7.3:40529851-40529870 | MS.gene94271:CDS | 25.0% |
| ! | ATTTGTACTCTAATGACAAA+TGG | + | chr7.3:40529162-40529181 | None:intergenic | 25.0% |
| ! | CAAATATTCGGAAGAAAAAT+TGG | - | chr7.3:40529209-40529228 | MS.gene94271:CDS | 25.0% |
| ! | TTAAATACAATCCAGTTTAC+AGG | - | chr7.3:40529253-40529272 | MS.gene94271:CDS | 25.0% |
| ! | TTTCCATTATGAACAAAAAC+AGG | + | chr7.3:40529285-40529304 | None:intergenic | 25.0% |
| ! | TTTCTTGAGAATGAATTGAA+GGG | - | chr7.3:40529727-40529746 | MS.gene94271:CDS | 25.0% |
| ! | TTTGTACTCTAATGACAAAT+GGG | + | chr7.3:40529161-40529180 | None:intergenic | 25.0% |
| !!! | AGGTGTTGAATACAAATATT+CGG | - | chr7.3:40529197-40529216 | MS.gene94271:CDS | 25.0% |
| ACAAATGTCATAATAGACAC+TGG | + | chr7.3:40529543-40529562 | None:intergenic | 30.0% | |
| AGCTAGTGAAGAATTATTGA+AGG | - | chr7.3:40529696-40529715 | MS.gene94271:CDS | 30.0% | |
| GAATTGAAGGGAAAATTCTT+TGG | - | chr7.3:40529739-40529758 | MS.gene94271:CDS | 30.0% | |
| GTTTCTTGAGAATGAATTGA+AGG | - | chr7.3:40529726-40529745 | MS.gene94271:CDS | 30.0% | |
| TAATTTCCTTGACTATTGGA+TGG | + | chr7.3:40529894-40529913 | None:intergenic | 30.0% | |
| TTACTCCATTTGTATAGCTT+TGG | + | chr7.3:40529859-40529878 | None:intergenic | 30.0% | |
| TTGAGTATATTGATGAGACT+TGG | - | chr7.3:40529331-40529350 | MS.gene94271:CDS | 30.0% | |
| ! | GCAAATTGTTGATCTTTTGA+AGG | + | chr7.3:40529919-40529938 | None:intergenic | 30.0% |
| !!! | GTTCCTGTTTTTGTTCATAA+TGG | - | chr7.3:40529279-40529298 | MS.gene94271:CDS | 30.0% |
| ATACAATCCAGTTTACAGGA+TGG | - | chr7.3:40529257-40529276 | MS.gene94271:CDS | 35.0% | |
| GCTCTTTGATAAGGATCATT+CGG | + | chr7.3:40529375-40529394 | None:intergenic | 35.0% | |
| GGCATAATTTCCTTGACTAT+TGG | + | chr7.3:40529898-40529917 | None:intergenic | 35.0% | |
| TAACAACCATCCAATAGTCA+AGG | - | chr7.3:40529885-40529904 | MS.gene94271:CDS | 35.0% | |
| TACCTTGTCATCAATGAACT+TGG | + | chr7.3:40529415-40529434 | None:intergenic | 35.0% | |
| TGATCCTTATCAAAGAGCTT+TGG | - | chr7.3:40529377-40529396 | MS.gene94271:CDS | 35.0% | |
| TTGAAGGGAAAATTCTTTGG+AGG | - | chr7.3:40529742-40529761 | MS.gene94271:CDS | 35.0% | |
| ! | CTGCTACTTCTTGGAATAAA+GGG | + | chr7.3:40529807-40529826 | None:intergenic | 35.0% |
| ! | TAATTTGCGAAATCAGTGTG+TGG | - | chr7.3:40529624-40529643 | MS.gene94271:CDS | 35.0% |
| ! | TCATAATGGAAATCCCATCT+CGG | - | chr7.3:40529293-40529312 | MS.gene94271:CDS | 35.0% |
| ! | TCTGCTACTTCTTGGAATAA+AGG | + | chr7.3:40529808-40529827 | None:intergenic | 35.0% |
| AGAGTTGCAGTTGTTCACAA+GGG | - | chr7.3:40529825-40529844 | MS.gene94271:CDS | 40.0% | |
| CAAATTGCGCTGGAATTGAA+AGG | - | chr7.3:40529177-40529196 | MS.gene94271:CDS | 40.0% | |
| CATTAGAGTACAAATTGCGC+TGG | - | chr7.3:40529167-40529186 | MS.gene94271:CDS | 40.0% | |
| TAAGGATCATTCGGCAAGAT+AGG | + | chr7.3:40529366-40529385 | None:intergenic | 40.0% | |
| TTCTCGCGTTCTTTCTTATC+AGG | + | chr7.3:40529676-40529695 | None:intergenic | 40.0% | |
| TTGCAACACTCTCTTGACTT+TGG | + | chr7.3:40529079-40529098 | None:intergenic | 40.0% | |
| ! | GAGGAAGAAGTGAAGCTTTT+GGG | - | chr7.3:40529123-40529142 | MS.gene94271:CDS | 40.0% |
| ! | GTCCAAGTTCATTGATGACA+AGG | - | chr7.3:40529410-40529429 | MS.gene94271:intron | 40.0% |
| ! | TGAGGAAGAAGTGAAGCTTT+TGG | - | chr7.3:40529122-40529141 | MS.gene94271:CDS | 40.0% |
| ! | TTCTTTGGAGGAGAAGAGAT+TGG | - | chr7.3:40529754-40529773 | MS.gene94271:CDS | 40.0% |
| !! | AAAGTCAAGAGAGTGTTGCA+AGG | - | chr7.3:40529078-40529097 | MS.gene94271:CDS | 40.0% |
| ACAGGAACCATCCTGTAAAC+TGG | + | chr7.3:40529267-40529286 | None:intergenic | 45.0% | |
| CAGAGTTGCAGTTGTTCACA+AGG | - | chr7.3:40529824-40529843 | MS.gene94271:CDS | 45.0% | |
| CGAGCCAAAGCTCTTTGATA+AGG | + | chr7.3:40529384-40529403 | None:intergenic | 45.0% | |
| ! | AAAGAGCTTTGGCTCGTTTC+TGG | - | chr7.3:40529388-40529407 | MS.gene94271:intron | 45.0% |
| ! | ACTGCAACTCTGCTACTTCT+TGG | + | chr7.3:40529816-40529835 | None:intergenic | 45.0% |
| !! | AAGAGAGTGTTGCAAGGCTA+TGG | - | chr7.3:40529084-40529103 | MS.gene94271:CDS | 45.0% |
| !!! | AGTGAAGCTTTTGGGTTCTG+TGG | - | chr7.3:40529131-40529150 | MS.gene94271:CDS | 45.0% |
| !!! | GTGAAGCTTTTGGGTTCTGT+GGG | - | chr7.3:40529132-40529151 | MS.gene94271:CDS | 45.0% |
| AATCACACGAGACTCCGAGA+TGG | + | chr7.3:40529310-40529329 | None:intergenic | 50.0% | |
| ATCACACGAGACTCCGAGAT+GGG | + | chr7.3:40529309-40529328 | None:intergenic | 50.0% | |
| GTTGCAAGGCTATGGTGTGA+TGG | - | chr7.3:40529092-40529111 | MS.gene94271:CDS | 50.0% | |
| ! | GCATCGACGCTTCAGATTGA+AGG | - | chr7.3:40529495-40529514 | MS.gene94271:intron | 50.0% |
| ATCAGTGTGTGGCTGCTGCA+TGG | - | chr7.3:40529635-40529654 | MS.gene94271:CDS | 55.0% | |
| TGGTGTGATGGCTGCATCTG+AGG | - | chr7.3:40529104-40529123 | MS.gene94271:CDS | 55.0% | |
| TGTGGCTGCTGCATGGATGT+CGG | - | chr7.3:40529642-40529661 | MS.gene94271:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 40529057 | 40529984 | 40529057 | ID=MS.gene94271 |
| chr7.3 | mRNA | 40529057 | 40529984 | 40529057 | ID=MS.gene94271.t1;Parent=MS.gene94271 |
| chr7.3 | exon | 40529610 | 40529984 | 40529610 | ID=MS.gene94271.t1.exon1;Parent=MS.gene94271.t1 |
| chr7.3 | CDS | 40529610 | 40529984 | 40529610 | ID=cds.MS.gene94271.t1;Parent=MS.gene94271.t1 |
| chr7.3 | exon | 40529057 | 40529401 | 40529057 | ID=MS.gene94271.t1.exon2;Parent=MS.gene94271.t1 |
| chr7.3 | CDS | 40529057 | 40529401 | 40529057 | ID=cds.MS.gene94271.t1;Parent=MS.gene94271.t1 |
| Gene Sequence |
| Protein sequence |
