AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene94597

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94597.t1 MTR_2g084360 90.355 197 18 1 19 215 1 196 4.41e-121 349
MS.gene94597.t1 MTR_2g093960 36.129 155 86 3 224 378 41 182 5.21e-26 108
MS.gene94597.t1 MTR_4g059870 34.839 155 88 3 224 378 47 188 4.20e-25 107
MS.gene94597.t1 MTR_8g017210 33.908 174 94 4 224 397 71 223 4.30e-25 107
MS.gene94597.t1 MTR_1g093095 39.024 164 91 8 235 394 105 263 5.32e-24 101
MS.gene94597.t1 MTR_2g099990 33.523 176 96 4 224 399 55 209 6.75e-24 103
MS.gene94597.t1 MTR_1g112270 36.129 155 85 4 224 378 53 193 1.56e-23 102
MS.gene94597.t1 MTR_1g112270 36.184 152 83 4 227 378 67 204 6.17e-23 101
MS.gene94597.t1 MTR_1g016010 33.548 155 90 3 224 378 50 191 1.94e-22 99.0
MS.gene94597.t1 MTR_1g094115 34.194 155 88 4 224 378 56 196 4.11e-22 98.6
MS.gene94597.t1 MTR_2g099990 34.161 161 85 4 239 399 1 140 3.83e-21 94.7
MS.gene94597.t1 MTR_2g090745 32.759 174 94 5 220 393 14 164 7.22e-21 94.4
MS.gene94597.t1 MTR_1g094115 35.338 133 72 4 246 378 61 179 1.90e-18 87.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene94597.t1 AT5G22890 47.765 358 125 7 44 388 53 361 9.87e-110 327
MS.gene94597.t1 AT1G34370 36.598 388 195 9 8 389 47 389 6.96e-74 239
MS.gene94597.t1 AT1G34370 36.598 388 195 9 8 389 47 389 6.96e-74 239
MS.gene94597.t1 AT1G34370 59.639 166 67 0 224 389 14 179 3.01e-73 231
MS.gene94597.t1 AT3G45260 34.483 174 94 4 224 397 48 201 5.20e-25 106
MS.gene94597.t1 AT3G45260 34.483 174 94 4 224 397 48 201 5.20e-25 106
MS.gene94597.t1 AT5G60470 34.839 155 88 4 224 378 53 194 6.70e-25 106
MS.gene94597.t1 AT5G60470 34.839 155 88 4 224 378 49 190 6.80e-25 106
MS.gene94597.t1 AT5G03150 35.484 155 87 3 224 378 62 203 2.33e-24 105
MS.gene94597.t1 AT5G44160 34.194 155 88 3 224 378 46 186 2.69e-24 104
MS.gene94597.t1 AT5G60470 35.333 150 84 4 229 378 49 185 2.88e-24 104
MS.gene94597.t1 AT1G03840 33.548 155 89 3 224 378 50 190 3.30e-24 104
MS.gene94597.t1 AT1G55110 33.333 174 96 4 224 397 72 225 8.64e-24 103
MS.gene94597.t1 AT1G55110 33.333 174 96 4 224 397 72 225 8.64e-24 103
MS.gene94597.t1 AT1G55110 33.333 174 96 4 224 397 72 225 8.64e-24 103
MS.gene94597.t1 AT5G66730 35.484 155 86 4 224 378 41 181 1.00e-23 103
MS.gene94597.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.20e-23 103
MS.gene94597.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.20e-23 103
MS.gene94597.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.20e-23 103
MS.gene94597.t1 AT2G02080 36.774 155 84 4 224 378 63 203 1.20e-23 103
MS.gene94597.t1 AT2G02070 36.129 155 85 4 224 378 61 201 2.11e-23 102
MS.gene94597.t1 AT2G02070 36.129 155 85 4 224 378 61 201 2.11e-23 102
MS.gene94597.t1 AT5G44160 34.211 152 86 3 227 378 10 147 2.27e-23 101
MS.gene94597.t1 AT1G03840 34.194 155 86 4 224 378 50 188 2.36e-23 102
MS.gene94597.t1 AT1G34790 40.764 157 84 6 238 392 138 287 2.38e-23 99.8
MS.gene94597.t1 AT4G02670 35.484 155 87 3 224 378 62 203 4.56e-23 100
MS.gene94597.t1 AT4G02670 35.484 155 87 3 224 378 64 205 5.27e-23 100
MS.gene94597.t1 AT3G13810 33.548 155 90 3 224 378 79 220 1.14e-22 100
MS.gene94597.t1 AT3G13810 33.548 155 90 3 224 378 79 220 1.14e-22 100
MS.gene94597.t1 AT3G13810 33.548 155 90 3 224 378 74 215 1.17e-22 100
MS.gene94597.t1 AT3G13810 33.548 155 90 3 224 378 60 201 1.22e-22 100
MS.gene94597.t1 AT3G50700 34.839 155 87 4 224 378 43 183 1.58e-22 99.4
MS.gene94597.t1 AT3G57670 36.943 157 90 4 238 392 211 360 5.82e-22 97.1
MS.gene94597.t1 AT1G14580 34.194 155 88 4 224 378 62 202 6.25e-22 97.8
MS.gene94597.t1 AT1G14580 34.194 155 88 4 224 378 62 202 6.25e-22 97.8
MS.gene94597.t1 AT1G14580 34.194 155 88 4 224 378 76 216 7.69e-22 97.4
MS.gene94597.t1 AT3G13810 33.553 152 88 3 227 378 69 207 8.91e-22 97.4
MS.gene94597.t1 AT3G13810 33.553 152 88 3 227 378 83 221 9.09e-22 97.4
MS.gene94597.t1 AT1G51220 39.161 143 79 4 246 387 180 315 9.51e-22 95.5
MS.gene94597.t1 AT3G20880 39.161 143 79 4 246 387 258 393 1.14e-21 96.3
MS.gene94597.t1 AT1G08290 37.255 153 83 6 246 392 182 327 1.80e-21 94.7
MS.gene94597.t1 AT1G13290 39.007 141 81 3 246 386 103 238 2.83e-21 93.6
MS.gene94597.t1 AT2G01940 36.306 157 84 5 224 378 53 195 3.45e-21 95.5
MS.gene94597.t1 AT2G02080 37.594 133 69 4 246 378 8 126 8.41e-20 91.3
MS.gene94597.t1 AT2G02080 37.594 133 69 4 246 378 8 126 8.41e-20 91.3
MS.gene94597.t1 AT1G25250 33.333 156 91 4 224 378 42 185 3.48e-19 89.0
MS.gene94597.t1 AT1G68130 32.692 156 91 4 224 378 50 192 1.42e-18 87.4
MS.gene94597.t1 AT1G25250 33.333 153 89 4 227 378 22 162 2.10e-18 86.3
MS.gene94597.t1 AT2G01940 36.552 145 76 5 224 366 53 183 2.13e-18 87.0

Find 87 sgRNAs with CRISPR-Local

Find 93 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTCTTGCATACATACATTT+TGG 0.081024 2.4:+15166894 None:intergenic
TCTAATATTCAATCAAATTT+TGG 0.121082 2.4:-15167498 MS.gene94597:CDS
GACGATACATGCTTGAAATT+TGG 0.140194 2.4:-15167258 MS.gene94597:CDS
AATTTGGGTCATCTTATAAT+TGG 0.158814 2.4:-15167242 MS.gene94597:CDS
TAATCTCTATTCTTAGTAAT+TGG 0.163762 2.4:+15167048 None:intergenic
AGACCCTCTTATACTATTAT+TGG 0.167733 2.4:+15167317 None:intergenic
GAAATTCCTTCCATGGAATT+TGG 0.168179 2.4:+15167792 None:intergenic
ACTATCTCATTGTCACATTC+TGG 0.228785 2.4:+15167213 None:intergenic
TTGACGAGTCTTGTTGATTT+GGG 0.269721 2.4:+15167673 None:intergenic
TTCTAGGAAAGATAAGCTTA+TGG 0.293207 2.4:-15166776 MS.gene94597:CDS
ACGATACATGCTTGAAATTT+GGG 0.311648 2.4:-15167257 MS.gene94597:CDS
TTTCTGTTCTTTCTGATTTG+AGG 0.317726 2.4:-15166855 MS.gene94597:CDS
ATAATAGTAACATTAATTAT+AGG 0.329713 2.4:-15167389 MS.gene94597:CDS
GAGATTGAAAAGGAGGGAAT+TGG 0.343144 2.4:+15167752 None:intergenic
TCTAGGAAAGATAAGCTTAT+GGG 0.346344 2.4:-15166775 MS.gene94597:CDS
ACACCTCTAGGGTTTGAAAT+AGG 0.353386 2.4:-15167867 MS.gene94597:CDS
GTTGACGAGTCTTGTTGATT+TGG 0.361562 2.4:+15167672 None:intergenic
ACAAGACTCGTCAACATCTA+TGG 0.370241 2.4:-15167664 MS.gene94597:CDS
GAAACCAATAATAGTATAAG+AGG 0.388033 2.4:-15167321 MS.gene94597:CDS
ATTTGGGTCATCTTATAATT+GGG 0.388779 2.4:-15167241 MS.gene94597:CDS
TATGACAAACCATCGATAAC+CGG 0.393038 2.4:+15166724 None:intergenic
GTCCTCAAGAAGGGTGTAGA+TGG 0.403741 2.4:-15166993 MS.gene94597:CDS
AGAAACATTGTGGTGATCTT+AGG 0.406285 2.4:-15166825 MS.gene94597:CDS
AATCAAGTGCAAACTCTTGT+TGG 0.406380 2.4:-15167708 MS.gene94597:CDS
AAGCTTATCTTTCCTAGAAA+AGG 0.414705 2.4:+15166780 None:intergenic
ACACATTATTGTCAAGTTTG+TGG 0.417742 2.4:-15167156 MS.gene94597:CDS
TGACAATGAGATAGTTGAAT+TGG 0.426435 2.4:-15167205 MS.gene94597:CDS
GGACATGTTGGTTTGTTTGT+GGG 0.428197 2.4:-15166754 MS.gene94597:CDS
GGGACATGTTGGTTTGTTTG+TGG 0.441560 2.4:-15166755 MS.gene94597:CDS
GAGTAGAGAGATTGAAAAGG+AGG 0.443183 2.4:+15167745 None:intergenic
TACAATGATTTCTTGTATTG+TGG 0.444279 2.4:+15167623 None:intergenic
ATCAAATCTTCCGTGATCAT+AGG 0.450294 2.4:+15167822 None:intergenic
CTATCTCATTGTCACATTCT+GGG 0.458096 2.4:+15167214 None:intergenic
TAATAATGAGTCGGAACCAT+TGG 0.460337 2.4:-15167430 MS.gene94597:CDS
TCGGAACCATTGGATTGGTT+TGG 0.467072 2.4:-15167420 MS.gene94597:CDS
TATTGTCAAGTTTGTGGCAA+AGG 0.467134 2.4:-15167150 MS.gene94597:CDS
GACACAAACCTTGATCTTAG+AGG 0.473876 2.4:-15167468 MS.gene94597:CDS
ATTGTCAAGTTTGTGGCAAA+GGG 0.476447 2.4:-15167149 MS.gene94597:CDS
ATTGAAAAGGAGGGAATTGG+AGG 0.476928 2.4:+15167755 None:intergenic
TGAACTAGAAATTCCTTCCA+TGG 0.477549 2.4:+15167785 None:intergenic
ACGATGATATTGACGATCAA+AGG 0.478863 2.4:-15167362 MS.gene94597:CDS
TAATAGAAGTAGTACCTTGA+GGG 0.496518 2.4:+15167553 None:intergenic
ATTTCAAGGACAACACCTCT+AGG 0.500290 2.4:-15167879 MS.gene94597:CDS
AGGATGCATATGAGAGCTCA+TGG 0.501614 2.4:-15167105 MS.gene94597:CDS
CGATGATATTGACGATCAAA+GGG 0.503206 2.4:-15167361 MS.gene94597:CDS
GATAAGCTTATGGGACATGT+TGG 0.504366 2.4:-15166766 MS.gene94597:CDS
GATGCCATTGCCAAATTCCA+TGG 0.512772 2.4:-15167802 MS.gene94597:CDS
TGATCATAGGAAACATTTGT+AGG 0.513435 2.4:+15167835 None:intergenic
ATGAGTCGGAACCATTGGAT+TGG 0.515560 2.4:-15167425 MS.gene94597:CDS
TGACTTCAAAGGTTGAAACT+TGG 0.516503 2.4:+15166957 None:intergenic
CCTTCCATGGAATTTGGCAA+TGG 0.522098 2.4:+15167798 None:intergenic
GCACAAATCAATGACTTCAA+AGG 0.522700 2.4:+15166946 None:intergenic
AAATATTCATGTCCTCAAGA+AGG 0.523706 2.4:-15167003 MS.gene94597:CDS
TCAGAGTAGAGAGATTGAAA+AGG 0.525207 2.4:+15167742 None:intergenic
TTTGTTTGTGGGACACCACC+CGG 0.527125 2.4:-15166743 MS.gene94597:CDS
AGTAGAGAGATTGAAAAGGA+GGG 0.529561 2.4:+15167746 None:intergenic
TTGACAATAATGTGTGTACT+TGG 0.534066 2.4:+15167164 None:intergenic
GGGTTTGAAATAGGAAATCA+AGG 0.537141 2.4:-15167858 MS.gene94597:CDS
GGGTCATCTTATAATTGGGT+CGG 0.542248 2.4:-15167237 MS.gene94597:CDS
TCAAGAGGGATGCAAATTTG+AGG 0.543405 2.4:-15167125 MS.gene94597:CDS
AATATTCATGTCCTCAAGAA+GGG 0.556447 2.4:-15167002 MS.gene94597:CDS
TTGTATTGTGGAGTTCATTG+TGG 0.558473 2.4:+15167635 None:intergenic
GGACACCACCCGGTTATCGA+TGG 0.564511 2.4:-15166733 MS.gene94597:CDS
ATGACAAACCATCGATAACC+GGG 0.571281 2.4:+15166725 None:intergenic
TTCCATCTACACCCTTCTTG+AGG 0.572019 2.4:+15166991 None:intergenic
TTTCAAGGACAACACCTCTA+GGG 0.577368 2.4:-15167878 MS.gene94597:CDS
GGAAACTAAGAGCAATCTGT+TGG 0.579939 2.4:+15167574 None:intergenic
CCATTGCCAAATTCCATGGA+AGG 0.581643 2.4:-15167798 MS.gene94597:CDS
CTTTCACCAAACCAATCCAA+TGG 0.587496 2.4:+15167414 None:intergenic
TTTGTGGCAAAGGGTTCAAG+AGG 0.595190 2.4:-15167140 MS.gene94597:CDS
ACAAATGTTTCCTATGATCA+CGG 0.598164 2.4:-15167832 MS.gene94597:CDS
AACATTGTGGTGATCTTAGG+TGG 0.610982 2.4:-15166822 MS.gene94597:CDS
TGACGAGTCTTGTTGATTTG+GGG 0.614111 2.4:+15167674 None:intergenic
ATTGCTCTTAGTTTCCCTCA+AGG 0.618106 2.4:-15167567 MS.gene94597:CDS
TTAATAGAAGTAGTACCTTG+AGG 0.620130 2.4:+15167552 None:intergenic
AAACCAATAATAGTATAAGA+GGG 0.620427 2.4:-15167320 MS.gene94597:CDS
TTGAAAAGGAGGGAATTGGA+GGG 0.623406 2.4:+15167756 None:intergenic
GGATGCATATGAGAGCTCAT+GGG 0.624368 2.4:-15167104 MS.gene94597:CDS
GCAAGTGAACATCATTGATG+TGG 0.636466 2.4:+15167596 None:intergenic
CCAAAATGTATGTATGCAAG+AGG 0.650780 2.4:-15166894 MS.gene94597:CDS
TTTCCTATTTCAAACCCTAG+AGG 0.660481 2.4:+15167864 None:intergenic
CTTAGGTGGCAATGTTCATG+TGG 0.663460 2.4:-15166808 MS.gene94597:CDS
TGAGATAGTTGAATTGGACG+CGG 0.672074 2.4:-15167199 MS.gene94597:CDS
GATGCATATGAGAGCTCATG+GGG 0.685805 2.4:-15167103 MS.gene94597:CDS
TTGTGGCAAAGGGTTCAAGA+GGG 0.697728 2.4:-15167139 MS.gene94597:CDS
AGGACACATGAGAAACATTG+TGG 0.713628 2.4:-15166835 MS.gene94597:CDS
ACAAACCATCGATAACCGGG+TGG 0.755555 2.4:+15166728 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATAGTAACATTAATTAT+AGG - chr2.4:15167195-15167214 MS.gene94597:CDS 10.0%
!!! TCTAATATTCAATCAAATTT+TGG - chr2.4:15167086-15167105 MS.gene94597:CDS 15.0%
!! AAACCAATAATAGTATAAGA+GGG - chr2.4:15167264-15167283 MS.gene94597:CDS 20.0%
!! TAATCTCTATTCTTAGTAAT+TGG + chr2.4:15167539-15167558 None:intergenic 20.0%
!!! CATATTTTCTAATAATGAGT+CGG - chr2.4:15167145-15167164 MS.gene94597:CDS 20.0%
! AATTTGGGTCATCTTATAAT+TGG - chr2.4:15167342-15167361 MS.gene94597:CDS 25.0%
! ATTTGGGTCATCTTATAATT+GGG - chr2.4:15167343-15167362 MS.gene94597:CDS 25.0%
! GAAACCAATAATAGTATAAG+AGG - chr2.4:15167263-15167282 MS.gene94597:CDS 25.0%
! TACAATGATTTCTTGTATTG+TGG + chr2.4:15166964-15166983 None:intergenic 25.0%
AAATATTCATGTCCTCAAGA+AGG - chr2.4:15167581-15167600 MS.gene94597:CDS 30.0%
AAGCTTATCTTTCCTAGAAA+AGG + chr2.4:15167807-15167826 None:intergenic 30.0%
AATATTCATGTCCTCAAGAA+GGG - chr2.4:15167582-15167601 MS.gene94597:CDS 30.0%
ACAAATGTTTCCTATGATCA+CGG - chr2.4:15166752-15166771 MS.gene94597:CDS 30.0%
ACACATTATTGTCAAGTTTG+TGG - chr2.4:15167428-15167447 MS.gene94597:CDS 30.0%
ACGATACATGCTTGAAATTT+GGG - chr2.4:15167327-15167346 MS.gene94597:CDS 30.0%
AGACCCTCTTATACTATTAT+TGG + chr2.4:15167270-15167289 None:intergenic 30.0%
TAATAGAAGTAGTACCTTGA+GGG + chr2.4:15167034-15167053 None:intergenic 30.0%
TCTAGGAAAGATAAGCTTAT+GGG - chr2.4:15167809-15167828 MS.gene94597:CDS 30.0%
TGACAATGAGATAGTTGAAT+TGG - chr2.4:15167379-15167398 MS.gene94597:CDS 30.0%
TGATCATAGGAAACATTTGT+AGG + chr2.4:15166752-15166771 None:intergenic 30.0%
TTAATAGAAGTAGTACCTTG+AGG + chr2.4:15167035-15167054 None:intergenic 30.0%
TTGACAATAATGTGTGTACT+TGG + chr2.4:15167423-15167442 None:intergenic 30.0%
! CTCTTGCATACATACATTTT+GGG + chr2.4:15167692-15167711 None:intergenic 30.0%
! TTCTAGGAAAGATAAGCTTA+TGG - chr2.4:15167808-15167827 MS.gene94597:CDS 30.0%
! TTTCTGTTCTTTCTGATTTG+AGG - chr2.4:15167729-15167748 MS.gene94597:CDS 30.0%
!!! ATTGCTGCTTTTGAAATTCT+TGG + chr2.4:15167067-15167086 None:intergenic 30.0%
AATCAAGTGCAAACTCTTGT+TGG - chr2.4:15166876-15166895 MS.gene94597:CDS 35.0%
ACGATGATATTGACGATCAA+AGG - chr2.4:15167222-15167241 MS.gene94597:CDS 35.0%
ACTATCTCATTGTCACATTC+TGG + chr2.4:15167374-15167393 None:intergenic 35.0%
AGAAACATTGTGGTGATCTT+AGG - chr2.4:15167759-15167778 MS.gene94597:CDS 35.0%
AGTAGAGAGATTGAAAAGGA+GGG + chr2.4:15166841-15166860 None:intergenic 35.0%
ATCAAATCTTCCGTGATCAT+AGG + chr2.4:15166765-15166784 None:intergenic 35.0%
ATTGTCAAGTTTGTGGCAAA+GGG - chr2.4:15167435-15167454 MS.gene94597:CDS 35.0%
CCAAAATGTATGTATGCAAG+AGG - chr2.4:15167690-15167709 MS.gene94597:CDS 35.0%
CGATGATATTGACGATCAAA+GGG - chr2.4:15167223-15167242 MS.gene94597:CDS 35.0%
CTATCTCATTGTCACATTCT+GGG + chr2.4:15167373-15167392 None:intergenic 35.0%
GAAATTCCTTCCATGGAATT+TGG + chr2.4:15166795-15166814 None:intergenic 35.0%
GACGATACATGCTTGAAATT+TGG - chr2.4:15167326-15167345 MS.gene94597:CDS 35.0%
GCACAAATCAATGACTTCAA+AGG + chr2.4:15167641-15167660 None:intergenic 35.0%
TAATAATGAGTCGGAACCAT+TGG - chr2.4:15167154-15167173 MS.gene94597:CDS 35.0%
TATGACAAACCATCGATAAC+CGG + chr2.4:15167863-15167882 None:intergenic 35.0%
TATTGTCAAGTTTGTGGCAA+AGG - chr2.4:15167434-15167453 MS.gene94597:CDS 35.0%
TCAGAGTAGAGAGATTGAAA+AGG + chr2.4:15166845-15166864 None:intergenic 35.0%
TGAACTAGAAATTCCTTCCA+TGG + chr2.4:15166802-15166821 None:intergenic 35.0%
TGACTTCAAAGGTTGAAACT+TGG + chr2.4:15167630-15167649 None:intergenic 35.0%
TTGTATTGTGGAGTTCATTG+TGG + chr2.4:15166952-15166971 None:intergenic 35.0%
TTTCCTATTTCAAACCCTAG+AGG + chr2.4:15166723-15166742 None:intergenic 35.0%
! CCTCTTGCATACATACATTT+TGG + chr2.4:15167693-15167712 None:intergenic 35.0%
! GGGTTTGAAATAGGAAATCA+AGG - chr2.4:15166726-15166745 MS.gene94597:CDS 35.0%
! GTTGAAACTTGGCATGTTTT+TGG + chr2.4:15167619-15167638 None:intergenic 35.0%
!! TTGACGAGTCTTGTTGATTT+GGG + chr2.4:15166914-15166933 None:intergenic 35.0%
!!! TGTTTTGACCTCTAAGATCA+AGG + chr2.4:15167127-15167146 None:intergenic 35.0%
AACATTGTGGTGATCTTAGG+TGG - chr2.4:15167762-15167781 MS.gene94597:CDS 40.0%
ACAAGACTCGTCAACATCTA+TGG - chr2.4:15166920-15166939 MS.gene94597:CDS 40.0%
AGGACACATGAGAAACATTG+TGG - chr2.4:15167749-15167768 MS.gene94597:CDS 40.0%
ATGACAAACCATCGATAACC+GGG + chr2.4:15167862-15167881 None:intergenic 40.0%
ATTGAAAAGGAGGGAATTGG+AGG + chr2.4:15166832-15166851 None:intergenic 40.0%
ATTGCTCTTAGTTTCCCTCA+AGG - chr2.4:15167017-15167036 MS.gene94597:CDS 40.0%
ATTTCAAGGACAACACCTCT+AGG - chr2.4:15166705-15166724 MS.gene94597:CDS 40.0%
CTTTCACCAAACCAATCCAA+TGG + chr2.4:15167173-15167192 None:intergenic 40.0%
GACACAAACCTTGATCTTAG+AGG - chr2.4:15167116-15167135 MS.gene94597:CDS 40.0%
GAGATTGAAAAGGAGGGAAT+TGG + chr2.4:15166835-15166854 None:intergenic 40.0%
GAGTAGAGAGATTGAAAAGG+AGG + chr2.4:15166842-15166861 None:intergenic 40.0%
GATAAGCTTATGGGACATGT+TGG - chr2.4:15167818-15167837 MS.gene94597:CDS 40.0%
GCAAGTGAACATCATTGATG+TGG + chr2.4:15166991-15167010 None:intergenic 40.0%
GGAAACTAAGAGCAATCTGT+TGG + chr2.4:15167013-15167032 None:intergenic 40.0%
GGGTCATCTTATAATTGGGT+CGG - chr2.4:15167347-15167366 MS.gene94597:CDS 40.0%
TCAAGAGGGATGCAAATTTG+AGG - chr2.4:15167459-15167478 MS.gene94597:CDS 40.0%
TGAGATAGTTGAATTGGACG+CGG - chr2.4:15167385-15167404 MS.gene94597:CDS 40.0%
TTGAAAAGGAGGGAATTGGA+GGG + chr2.4:15166831-15166850 None:intergenic 40.0%
TTTCAAGGACAACACCTCTA+GGG - chr2.4:15166706-15166725 MS.gene94597:CDS 40.0%
!! ACACCTCTAGGGTTTGAAAT+AGG - chr2.4:15166717-15166736 MS.gene94597:CDS 40.0%
!! GGACATGTTGGTTTGTTTGT+GGG - chr2.4:15167830-15167849 MS.gene94597:CDS 40.0%
!! GTTGACGAGTCTTGTTGATT+TGG + chr2.4:15166915-15166934 None:intergenic 40.0%
!! TGACGAGTCTTGTTGATTTG+GGG + chr2.4:15166913-15166932 None:intergenic 40.0%
AGGATGCATATGAGAGCTCA+TGG - chr2.4:15167479-15167498 MS.gene94597:CDS 45.0%
ATGAGTCGGAACCATTGGAT+TGG - chr2.4:15167159-15167178 MS.gene94597:CDS 45.0%
CCATTGCCAAATTCCATGGA+AGG - chr2.4:15166786-15166805 MS.gene94597:CDS 45.0%
CCTTCCATGGAATTTGGCAA+TGG + chr2.4:15166789-15166808 None:intergenic 45.0%
CTTAGGTGGCAATGTTCATG+TGG - chr2.4:15167776-15167795 MS.gene94597:CDS 45.0%
GATGCATATGAGAGCTCATG+GGG - chr2.4:15167481-15167500 MS.gene94597:CDS 45.0%
GATGCCATTGCCAAATTCCA+TGG - chr2.4:15166782-15166801 MS.gene94597:CDS 45.0%
GGATGCATATGAGAGCTCAT+GGG - chr2.4:15167480-15167499 MS.gene94597:CDS 45.0%
TTCCATCTACACCCTTCTTG+AGG + chr2.4:15167596-15167615 None:intergenic 45.0%
TTGTGGCAAAGGGTTCAAGA+GGG - chr2.4:15167445-15167464 MS.gene94597:CDS 45.0%
TTTGTGGCAAAGGGTTCAAG+AGG - chr2.4:15167444-15167463 MS.gene94597:CDS 45.0%
! CATGTGGCACTACCTTTTCT+AGG - chr2.4:15167792-15167811 MS.gene94597:CDS 45.0%
!! GGGACATGTTGGTTTGTTTG+TGG - chr2.4:15167829-15167848 MS.gene94597:CDS 45.0%
!! TCGGAACCATTGGATTGGTT+TGG - chr2.4:15167164-15167183 MS.gene94597:CDS 45.0%
ACAAACCATCGATAACCGGG+TGG + chr2.4:15167859-15167878 None:intergenic 50.0%
TTTGTTTGTGGGACACCACC+CGG - chr2.4:15167841-15167860 MS.gene94597:CDS 50.0%
! GTCCTCAAGAAGGGTGTAGA+TGG - chr2.4:15167591-15167610 MS.gene94597:CDS 50.0%
GGACACCACCCGGTTATCGA+TGG - chr2.4:15167851-15167870 MS.gene94597:CDS 60.0%


Chromosome Type Strat End Strand Name
chr2.4 gene 15166702 15167904 15166702 ID=MS.gene94597
chr2.4 mRNA 15166702 15167904 15166702 ID=MS.gene94597.t1;Parent=MS.gene94597
chr2.4 exon 15166702 15167904 15166702 ID=MS.gene94597.t1.exon1;Parent=MS.gene94597.t1
chr2.4 CDS 15166702 15167904 15166702 ID=cds.MS.gene94597.t1;Parent=MS.gene94597.t1
Gene Sequence

>MS.gene94597

ATGATTTCAAGGACAACACCTCTAGGGTTTGAAATAGGAAATCAAGGCCTACAAATGTTTCCTATGATCACGGAAGATTTGATGCCATTGCCAAATTCCATGGAAGGAATTTCTAGTTCAACTTTACCCTCCAATTCCCTCCTTTTCAATCTCTCTACTCTGAAAGACAAGCTCAATCAAGTGCAAACTCTTGTTGGTGTCATTCTCTCCCCAAATCAACAAGACTCGTCAACATCTATGGCATTATCCACAATGAACTCCACAATACAAGAAATCATTGTAACTTCCACATCAATGATGTTCACTTGCCAACAGATTGCTCTTAGTTTCCCTCAAGGTACTACTTCTATTAAGTGTGCAAACCAAGAATTTCAAAAGCAGCAATCTAATATTCAATCAAATTTTGGCAACAATGACACAAACCTTGATCTTAGAGGTCAAAACATATTTTCTAATAATGAGTCGGAACCATTGGATTGGTTTGGTGAAAGCTATAATAGTAACATTAATTATAGGCTCAACGATGATATTGACGATCAAAGGGTTGATCATGAAATTAGTGAAACCAATAATAGTATAAGAGGGTCTAATGAAGATATTTCAACGAAGAATAATTCTGATCGTGACGATACATGCTTGAAATTTGGGTCATCTTATAATTGGGTCGGCCCAGAATGTGACAATGAGATAGTTGAATTGGACGCGGCTGATTTATTAGCCAAGTACACACATTATTGTCAAGTTTGTGGCAAAGGGTTCAAGAGGGATGCAAATTTGAGGATGCATATGAGAGCTCATGGGGATGAGTACAAGAGTAGTGCAGCATTGAGCAATCCAATTACTAAGAATAGAGATTATTTGATAAGTATGAAAAATAAGAAATATTCATGTCCTCAAGAAGGGTGTAGATGGAACCAAAAACATGCCAAGTTTCAACCTTTGAAGTCATTGATTTGTGCTAAGAATCATTACAAGAGAAGTCATTGTCCCAAAATGTATGTATGCAAGAGGTGTAATTTGAAGCAATTTTCTGTTCTTTCTGATTTGAGGACACATGAGAAACATTGTGGTGATCTTAGGTGGCAATGTTCATGTGGCACTACCTTTTCTAGGAAAGATAAGCTTATGGGACATGTTGGTTTGTTTGTGGGACACCACCCGGTTATCGATGGTTTGTCATATAGTAGTACTCACACAAGTTAG
Protein sequence

>MS.gene94597.t1

MISRTTPLGFEIGNQGLQMFPMITEDLMPLPNSMEGISSSTLPSNSLLFNLSTLKDKLNQVQTLVGVILSPNQQDSSTSMALSTMNSTIQEIIVTSTSMMFTCQQIALSFPQGTTSIKCANQEFQKQQSNIQSNFGNNDTNLDLRGQNIFSNNESEPLDWFGESYNSNINYRLNDDIDDQRVDHEISETNNSIRGSNEDISTKNNSDRDDTCLKFGSSYNWVGPECDNEIVELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSSAALSNPITKNRDYLISMKNKKYSCPQEGCRWNQKHAKFQPLKSLICAKNHYKRSHCPKMYVCKRCNLKQFSVLSDLRTHEKHCGDLRWQCSCGTTFSRKDKLMGHVGLFVGHHPVIDGLSYSSTHTS