Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94666.t1 | XP_013449142.1 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 1.30E-146 | 528.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94666.t1 | Q9SRM5 | 62.5 | 256 | 94 | 1 | 1 | 254 | 1 | 256 | 2.1e-92 | 340.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94666.t1 | A0A072U067 | 99.2 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 9.6e-147 | 528.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060482 | MS.gene94666 | 0.801775 | 7.68E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94666.t1 | MTR_7g068550 | 99.216 | 255 | 2 | 0 | 1 | 255 | 1 | 255 | 0.0 | 525 |
| MS.gene94666.t1 | MTR_4g016510 | 63.281 | 256 | 92 | 1 | 1 | 254 | 1 | 256 | 1.12e-124 | 355 |
| MS.gene94666.t1 | MTR_7g068530 | 61.417 | 254 | 97 | 1 | 1 | 254 | 1 | 253 | 1.50e-117 | 337 |
| MS.gene94666.t1 | MTR_7g068460 | 64.167 | 240 | 84 | 2 | 5 | 243 | 32 | 270 | 5.93e-112 | 323 |
| MS.gene94666.t1 | MTR_3g070460 | 57.031 | 256 | 108 | 1 | 1 | 254 | 1 | 256 | 5.48e-110 | 317 |
| MS.gene94666.t1 | MTR_7g068500 | 61.925 | 239 | 89 | 2 | 6 | 243 | 32 | 269 | 9.96e-104 | 302 |
| MS.gene94666.t1 | MTR_7g068470 | 60.000 | 240 | 93 | 3 | 5 | 243 | 1 | 238 | 3.18e-100 | 292 |
| MS.gene94666.t1 | MTR_7g068470 | 58.750 | 240 | 92 | 4 | 5 | 243 | 1 | 234 | 2.69e-96 | 282 |
| MS.gene94666.t1 | MTR_7g068450 | 55.777 | 251 | 105 | 4 | 5 | 250 | 1 | 250 | 1.26e-94 | 278 |
| MS.gene94666.t1 | MTR_2g015500 | 40.566 | 212 | 116 | 3 | 6 | 207 | 4 | 215 | 5.66e-53 | 172 |
| MS.gene94666.t1 | MTR_2g015510 | 40.476 | 210 | 117 | 3 | 6 | 207 | 5 | 214 | 1.25e-50 | 166 |
| MS.gene94666.t1 | MTR_4g016500 | 39.545 | 220 | 64 | 4 | 35 | 254 | 277 | 427 | 1.09e-43 | 153 |
| MS.gene94666.t1 | MTR_7g068520 | 37.657 | 239 | 52 | 3 | 5 | 243 | 2 | 143 | 1.47e-42 | 142 |
| MS.gene94666.t1 | MTR_4g105680 | 37.037 | 189 | 112 | 1 | 27 | 208 | 51 | 239 | 5.55e-33 | 121 |
| MS.gene94666.t1 | MTR_2g015480 | 35.500 | 200 | 110 | 7 | 15 | 207 | 66 | 253 | 3.13e-29 | 112 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94666.t1 | AT3G11210 | 62.500 | 256 | 94 | 1 | 1 | 254 | 1 | 256 | 1.22e-118 | 339 |
| MS.gene94666.t1 | AT2G38180 | 63.274 | 226 | 83 | 0 | 1 | 226 | 1 | 226 | 8.88e-107 | 311 |
| MS.gene94666.t1 | AT5G62930 | 42.489 | 233 | 119 | 3 | 5 | 230 | 1 | 225 | 2.76e-60 | 191 |
| MS.gene94666.t1 | AT5G62930 | 42.489 | 233 | 119 | 3 | 5 | 230 | 27 | 251 | 6.56e-60 | 191 |
| MS.gene94666.t1 | AT5G45920 | 43.333 | 210 | 112 | 3 | 5 | 207 | 2 | 211 | 2.68e-54 | 175 |
| MS.gene94666.t1 | AT5G45920 | 43.333 | 210 | 112 | 3 | 5 | 207 | 2 | 211 | 2.68e-54 | 175 |
| MS.gene94666.t1 | AT5G45920 | 43.646 | 181 | 95 | 3 | 5 | 178 | 2 | 182 | 1.10e-46 | 154 |
| MS.gene94666.t1 | AT5G45920 | 43.646 | 181 | 95 | 3 | 5 | 178 | 2 | 182 | 1.10e-46 | 154 |
| MS.gene94666.t1 | AT5G62930 | 37.870 | 169 | 90 | 3 | 69 | 230 | 7 | 167 | 1.19e-32 | 118 |
Find 69 sgRNAs with CRISPR-Local
Find 152 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAGTATTGAAGGAAATATTA+AGG | 0.265182 | 7.3:+36731321 | MS.gene94666:CDS |
| ATCAAAACTCATCTGAATTA+TGG | 0.265773 | 7.3:-36728967 | None:intergenic |
| AGACCTCAAATCGTGCTATT+TGG | 0.280414 | 7.3:+36728939 | MS.gene94666:CDS |
| TCTGCACTTGGAGGGTAATA+TGG | 0.315910 | 7.3:-36731416 | None:intergenic |
| CTAACCAGTCCTCTCTTTCC+TGG | 0.321965 | 7.3:-36730843 | None:intergenic |
| GCTTCCAATCTGCTTCTCTA+AGG | 0.341955 | 7.3:-36731346 | None:intergenic |
| ATGGAATTCAAGACGTGCTT+TGG | 0.369356 | 7.3:+36729673 | MS.gene94666:CDS |
| CTTGATTTGTACTTCACTGA+TGG | 0.402939 | 7.3:-36730561 | None:intergenic |
| AGCTAATTTGTATGCTAGAA+AGG | 0.405931 | 7.3:+36729013 | MS.gene94666:CDS |
| ATAGTATTGAGGGGATATTC+TGG | 0.415164 | 7.3:+36729650 | MS.gene94666:CDS |
| GAGGAGAGGTGAGAAATATA+AGG | 0.417441 | 7.3:-36730538 | None:intergenic |
| TAATCTCTGGTCTGCAATCC+AGG | 0.419500 | 7.3:+36730825 | MS.gene94666:CDS |
| ATTTGAAAGTTATTAATCTC+TGG | 0.420460 | 7.3:+36730812 | MS.gene94666:CDS |
| TGCTTATGTCCAACCATCAT+TGG | 0.435106 | 7.3:+36730184 | MS.gene94666:CDS |
| TTGGTAATTATCTACTTTGG+TGG | 0.439156 | 7.3:+36730203 | MS.gene94666:CDS |
| AGCACGATTTGAGGTCTCAT+TGG | 0.440996 | 7.3:-36728933 | None:intergenic |
| CCCTAGGAGGCATTTGCAAT+GGG | 0.445483 | 7.3:+36731472 | MS.gene94666:CDS |
| TCATTGGTAATTATCTACTT+TGG | 0.448861 | 7.3:+36730200 | MS.gene94666:CDS |
| TCCCATTGCAAATGCCTCCT+AGG | 0.456278 | 7.3:-36731473 | None:intergenic |
| AGTGACATCCAATGCAAACT+TGG | 0.457673 | 7.3:-36731368 | None:intergenic |
| GTGGTTCCATCTGCACTTGG+AGG | 0.459823 | 7.3:-36731425 | None:intergenic |
| AGGAAGCAAGGTAGTATTGA+AGG | 0.487351 | 7.3:+36731310 | MS.gene94666:CDS |
| ATTGGAAGCCAAGTTTGCAT+TGG | 0.493472 | 7.3:+36731360 | MS.gene94666:CDS |
| GAATTCAAGACGTGCTTTGG+AGG | 0.494234 | 7.3:+36729676 | MS.gene94666:CDS |
| GAGTCCAGTGCAACACAGAC+TGG | 0.494319 | 7.3:+36730727 | MS.gene94666:intron |
| GGGTCCTTAGAGAAGCAGAT+TGG | 0.495038 | 7.3:+36731342 | MS.gene94666:CDS |
| AGTATTGAAGGAAATATTAA+GGG | 0.495090 | 7.3:+36731322 | MS.gene94666:CDS |
| AAGAATATAAAGAAAATATG+AGG | 0.495267 | 7.3:+36730279 | MS.gene94666:CDS |
| TTGATTTGTACTTCACTGAT+GGG | 0.500040 | 7.3:-36730560 | None:intergenic |
| GGACCAAGACCAGATGGGTG+GGG | 0.511872 | 7.3:-36730242 | None:intergenic |
| AAGTAGATAATTACCAATGA+TGG | 0.516176 | 7.3:-36730197 | None:intergenic |
| ATAGGCGGACATAGTATTGA+GGG | 0.529124 | 7.3:+36729640 | MS.gene94666:intron |
| GAGCCAAATAGCACGATTTG+AGG | 0.529805 | 7.3:-36728942 | None:intergenic |
| GAAGATTGCTAACTACCTAA+AGG | 0.534339 | 7.3:+36730301 | MS.gene94666:CDS |
| AGGACCAAGACCAGATGGGT+GGG | 0.535530 | 7.3:-36730243 | None:intergenic |
| GACCAAGACCAGATGGGTGG+GGG | 0.542601 | 7.3:-36730241 | None:intergenic |
| GGAGTTCATTTGTCAGCTGA+AGG | 0.543643 | 7.3:+36731290 | MS.gene94666:CDS |
| CCCATTGCAAATGCCTCCTA+GGG | 0.544514 | 7.3:-36731472 | None:intergenic |
| GAATCTTCTGCATATTCAGT+TGG | 0.544577 | 7.3:-36731392 | None:intergenic |
| AACATTGTGGAATATATGCT+AGG | 0.545833 | 7.3:+36730761 | MS.gene94666:CDS |
| TCCCTAGGAGGCATTTGCAA+TGG | 0.552104 | 7.3:+36731471 | MS.gene94666:CDS |
| ACATGAGGACCAAGACCAGA+TGG | 0.559879 | 7.3:-36730248 | None:intergenic |
| ATGTTTCTTACAGTATCCCT+AGG | 0.560400 | 7.3:+36731456 | MS.gene94666:CDS |
| TATAGGCGGACATAGTATTG+AGG | 0.561827 | 7.3:+36729639 | MS.gene94666:intron |
| GTGGTGGTTCCATCTGCACT+TGG | 0.562402 | 7.3:-36731428 | None:intergenic |
| TATTACCCTCCAAGTGCAGA+TGG | 0.563691 | 7.3:+36731419 | MS.gene94666:CDS |
| GTCTGCAATCCAGGAAAGAG+AGG | 0.570010 | 7.3:+36730834 | MS.gene94666:CDS |
| TATTCTTCAATGGGAACATG+AGG | 0.570082 | 7.3:-36730263 | None:intergenic |
| TGGTTCCATCTGCACTTGGA+GGG | 0.575597 | 7.3:-36731424 | None:intergenic |
| TACTTCACTGATGGGAGGAG+AGG | 0.578122 | 7.3:-36730552 | None:intergenic |
| GAGGACCAAGACCAGATGGG+TGG | 0.585053 | 7.3:-36730244 | None:intergenic |
| GTAAGAAACATTTATAGTGG+TGG | 0.591121 | 7.3:-36731444 | None:intergenic |
| TATTGAGGGGATATTCTGGA+TGG | 0.591373 | 7.3:+36729654 | MS.gene94666:CDS |
| AGATAATTACCAATGATGGT+TGG | 0.595168 | 7.3:-36730193 | None:intergenic |
| AATATATGCTAGGGCACTGG+TGG | 0.598632 | 7.3:+36730771 | MS.gene94666:CDS |
| ATTTGTACTTCACTGATGGG+AGG | 0.605876 | 7.3:-36730557 | None:intergenic |
| TTTGTCAGCTGAAGGAAGCA+AGG | 0.608262 | 7.3:+36731298 | MS.gene94666:CDS |
| ACTGTAAGAAACATTTATAG+TGG | 0.610031 | 7.3:-36731447 | None:intergenic |
| ACGTAGTATAAAGACATGGC+AGG | 0.611285 | 7.3:+36728909 | None:intergenic |
| ACATTGTGGAATATATGCTA+GGG | 0.622516 | 7.3:+36730762 | MS.gene94666:CDS |
| GAGAGGTGAGAAATATAAGG+CGG | 0.629380 | 7.3:-36730535 | None:intergenic |
| AAAACTCATCTGAATTATGG+AGG | 0.630001 | 7.3:-36728964 | None:intergenic |
| CATGAGGACCAAGACCAGAT+GGG | 0.631173 | 7.3:-36730247 | None:intergenic |
| CAATCCAGGAAAGAGAGGAC+TGG | 0.632299 | 7.3:+36730839 | MS.gene94666:CDS |
| TGGAATATATGCTAGGGCAC+TGG | 0.636669 | 7.3:+36730768 | MS.gene94666:CDS |
| GGAAGAACAAATGAACATTG+TGG | 0.639652 | 7.3:+36730748 | MS.gene94666:CDS |
| TTTCTTACAGTATCCCTAGG+AGG | 0.647425 | 7.3:+36731459 | MS.gene94666:CDS |
| TAGGCGGACATAGTATTGAG+GGG | 0.695080 | 7.3:+36729641 | MS.gene94666:intron |
| TAAGGCGGATATGATCCGAG+AGG | 0.773737 | 7.3:-36730520 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTAAATATTCAAG+AGG | - | chr7.3:36729822-36729841 | None:intergenic | 10.0% |
| !! | TAAAATATTGACATATATAT+AGG | + | chr7.3:36729622-36729641 | MS.gene94666:intron | 10.0% |
| !!! | AAAAAAAAAAAAGAGTTTTT+TGG | - | chr7.3:36729997-36730016 | None:intergenic | 10.0% |
| !!! | AAATATGATTCATAATTTTT+TGG | + | chr7.3:36730456-36730475 | MS.gene94666:intron | 10.0% |
| !!! | TTATATTTTTTAATCAACTT+AGG | + | chr7.3:36730160-36730179 | MS.gene94666:intron | 10.0% |
| !!! | TTGATTATTATTTTTTGTTA+GGG | + | chr7.3:36731265-36731284 | MS.gene94666:intron | 10.0% |
| !!! | TTTAATTTCTAACATTTTTA+TGG | + | chr7.3:36730697-36730716 | MS.gene94666:intron | 10.0% |
| !!! | TTTGATTATTATTTTTTGTT+AGG | + | chr7.3:36731264-36731283 | MS.gene94666:intron | 10.0% |
| !!! | TTTTTTTTTGTAATTATTGA+TGG | + | chr7.3:36729575-36729594 | MS.gene94666:intron | 10.0% |
| !! | AAGAATATAAAGAAAATATG+AGG | + | chr7.3:36730279-36730298 | MS.gene94666:CDS | 15.0% |
| !! | AGTATAATATATGTAAGAAA+AGG | + | chr7.3:36729436-36729455 | MS.gene94666:intron | 15.0% |
| !!! | AATATTCCTTTTAATAATAG+TGG | + | chr7.3:36730888-36730907 | MS.gene94666:intron | 15.0% |
| !!! | ATTTTCTTTATATTCTTCAA+TGG | - | chr7.3:36730276-36730295 | None:intergenic | 15.0% |
| !!! | ATTTTTACTCTTTTAATAGT+TGG | - | chr7.3:36729354-36729373 | None:intergenic | 15.0% |
| !!! | TTAACACATTAATTAGTTTT+AGG | + | chr7.3:36729935-36729954 | MS.gene94666:intron | 15.0% |
| !!! | TTAATTTGTATACACTATTA+AGG | + | chr7.3:36730387-36730406 | MS.gene94666:intron | 15.0% |
| !!! | TTTTCTTTATATTCTTCAAT+GGG | - | chr7.3:36730275-36730294 | None:intergenic | 15.0% |
| !! | AAATGTAGAAAAAGTAAAAG+TGG | - | chr7.3:36730934-36730953 | None:intergenic | 20.0% |
| !! | AATATAACAACAAGACAAAA+TGG | - | chr7.3:36730147-36730166 | None:intergenic | 20.0% |
| !! | AATATATGCAAAAATGTACT+TGG | - | chr7.3:36729122-36729141 | None:intergenic | 20.0% |
| !! | AATATTGACATATATATAGG+CGG | + | chr7.3:36729625-36729644 | MS.gene94666:intron | 20.0% |
| !! | ATAAATCATAACTTATTGTG+TGG | - | chr7.3:36730341-36730360 | None:intergenic | 20.0% |
| !! | ATACTTTATCAAATTCATGA+AGG | - | chr7.3:36731243-36731262 | None:intergenic | 20.0% |
| !! | ATCACAAATGTATAATTACT+TGG | + | chr7.3:36730090-36730109 | MS.gene94666:intron | 20.0% |
| !! | ATTTGAAAGTTATTAATCTC+TGG | + | chr7.3:36730812-36730831 | MS.gene94666:CDS | 20.0% |
| !! | CAATTATTGGAATATTGAAA+AGG | - | chr7.3:36729772-36729791 | None:intergenic | 20.0% |
| !! | GAAAATCATTATTTACCTTT+AGG | - | chr7.3:36730319-36730338 | None:intergenic | 20.0% |
| !! | TACTTTATCAAATTCATGAA+GGG | - | chr7.3:36731242-36731261 | None:intergenic | 20.0% |
| !! | TGATTACTAATTACTCATTA+TGG | + | chr7.3:36730064-36730083 | MS.gene94666:intron | 20.0% |
| !! | TTTGTATAAACAAAAGTTGA+CGG | - | chr7.3:36731007-36731026 | None:intergenic | 20.0% |
| !!! | AAAGTACCACTATTATTAAA+AGG | - | chr7.3:36730897-36730916 | None:intergenic | 20.0% |
| !!! | AGTATTGAAGGAAATATTAA+GGG | + | chr7.3:36731322-36731341 | MS.gene94666:CDS | 20.0% |
| !!! | GTATATTTTTTGAGTGTTTT+AGG | + | chr7.3:36729154-36729173 | MS.gene94666:intron | 20.0% |
| !!! | TAGTATTGAAGGAAATATTA+AGG | + | chr7.3:36731321-36731340 | MS.gene94666:CDS | 20.0% |
| !!! | TTATTATTTTTTGTTAGGGA+TGG | + | chr7.3:36731269-36731288 | MS.gene94666:intron | 20.0% |
| ! | AACAAGATTTGGAAATGTTA+AGG | - | chr7.3:36730976-36730995 | None:intergenic | 25.0% |
| ! | AAGTAGATAATTACCAATGA+TGG | - | chr7.3:36730200-36730219 | None:intergenic | 25.0% |
| ! | AATATTCAAGAGGATAACAA+TGG | - | chr7.3:36729812-36729831 | None:intergenic | 25.0% |
| ! | AATGTTAAGGAAATAACTGT+AGG | - | chr7.3:36730963-36730982 | None:intergenic | 25.0% |
| ! | ACCATAAAATGATATAGAGT+AGG | - | chr7.3:36729051-36729070 | None:intergenic | 25.0% |
| ! | ACTGTAAGAAACATTTATAG+TGG | - | chr7.3:36731450-36731469 | None:intergenic | 25.0% |
| ! | AGAATCTATTAGATACCTTA+GGG | - | chr7.3:36729718-36729737 | None:intergenic | 25.0% |
| ! | AGCAAAATAATTTATTCGTC+AGG | - | chr7.3:36731179-36731198 | None:intergenic | 25.0% |
| ! | AGGTATCTAATAGATTCTAA+TGG | + | chr7.3:36729720-36729739 | MS.gene94666:intron | 25.0% |
| ! | ATCAAAACTCATCTGAATTA+TGG | - | chr7.3:36728970-36728989 | None:intergenic | 25.0% |
| ! | CCAAAGATATATTATTGATG+AGG | + | chr7.3:36729246-36729265 | MS.gene94666:intron | 25.0% |
| ! | CCTCATCAATAATATATCTT+TGG | - | chr7.3:36729249-36729268 | None:intergenic | 25.0% |
| ! | GTAAGAAAAGGAGAAATTTA+AGG | + | chr7.3:36729448-36729467 | MS.gene94666:intron | 25.0% |
| ! | TACAAATCAAGAAAAAACTC+AGG | + | chr7.3:36730573-36730592 | MS.gene94666:CDS | 25.0% |
| ! | TAGAATCTATTAGATACCTT+AGG | - | chr7.3:36729719-36729738 | None:intergenic | 25.0% |
| !! | ATCCTTTTGAATATTCCATT+GGG | + | chr7.3:36729744-36729763 | MS.gene94666:intron | 25.0% |
| !! | TATCCTTTTGAATATTCCAT+TGG | + | chr7.3:36729743-36729762 | MS.gene94666:intron | 25.0% |
| !! | TCATTGGTAATTATCTACTT+TGG | + | chr7.3:36730200-36730219 | MS.gene94666:CDS | 25.0% |
| !! | TCCTACTCTATATCATTTTA+TGG | + | chr7.3:36729047-36729066 | MS.gene94666:intron | 25.0% |
| !! | TTTCTAACATTTTTATGGCT+TGG | + | chr7.3:36730702-36730721 | MS.gene94666:intron | 25.0% |
| !!! | ACTAAGAGTTATTTTCTTGT+TGG | + | chr7.3:36729396-36729415 | MS.gene94666:intron | 25.0% |
| !!! | ATTCAGATGAGTTTTGATAA+TGG | + | chr7.3:36728972-36728991 | MS.gene94666:CDS | 25.0% |
| AAAACTCATCTGAATTATGG+AGG | - | chr7.3:36728967-36728986 | None:intergenic | 30.0% | |
| AACATTGTGGAATATATGCT+AGG | + | chr7.3:36730761-36730780 | MS.gene94666:CDS | 30.0% | |
| AACCCAATGGAATATTCAAA+AGG | - | chr7.3:36729749-36729768 | None:intergenic | 30.0% | |
| AATATTGAAAAGGAACCCAA+TGG | - | chr7.3:36729762-36729781 | None:intergenic | 30.0% | |
| ACATTGTGGAATATATGCTA+GGG | + | chr7.3:36730762-36730781 | MS.gene94666:CDS | 30.0% | |
| AGATAATTACCAATGATGGT+TGG | - | chr7.3:36730196-36730215 | None:intergenic | 30.0% | |
| AGTAGGTAAGAATCAAAATC+TGG | - | chr7.3:36729273-36729292 | None:intergenic | 30.0% | |
| ATCAATGAAGTTGAGTCTAA+CGG | + | chr7.3:36731134-36731153 | MS.gene94666:intron | 30.0% | |
| CAATTCAGCTTCATTATACT+TGG | - | chr7.3:36729330-36729349 | None:intergenic | 30.0% | |
| CCAGCTAGCATTAATATTTA+TGG | - | chr7.3:36729849-36729868 | None:intergenic | 30.0% | |
| CCATAAATATTAATGCTAGC+TGG | + | chr7.3:36729846-36729865 | MS.gene94666:intron | 30.0% | |
| GTAAGAAACATTTATAGTGG+TGG | - | chr7.3:36731447-36731466 | None:intergenic | 30.0% | |
| ! | AGCTAATTTGTATGCTAGAA+AGG | + | chr7.3:36729013-36729032 | MS.gene94666:CDS | 30.0% |
| ! | ATAAGTCTTTGAGCACTTTT+CGG | + | chr7.3:36729513-36729532 | MS.gene94666:intron | 30.0% |
| ! | TAATTTATTCGTCAGGTTGT+AGG | - | chr7.3:36731172-36731191 | None:intergenic | 30.0% |
| ! | TTGGTAATTATCTACTTTGG+TGG | + | chr7.3:36730203-36730222 | MS.gene94666:CDS | 30.0% |
| !! | TTGATTTGTACTTCACTGAT+GGG | - | chr7.3:36730563-36730582 | None:intergenic | 30.0% |
| ATAGTGAAACTTATCCTCCA+AGG | + | chr7.3:36729196-36729215 | MS.gene94666:intron | 35.0% | |
| ATGTTTCTTACAGTATCCCT+AGG | + | chr7.3:36731456-36731475 | MS.gene94666:CDS | 35.0% | |
| CAAGAAAAAACTCAGGTTCA+TGG | + | chr7.3:36730580-36730599 | MS.gene94666:intron | 35.0% | |
| GAAGATTGCTAACTACCTAA+AGG | + | chr7.3:36730301-36730320 | MS.gene94666:CDS | 35.0% | |
| GAATCTTCTGCATATTCAGT+TGG | - | chr7.3:36731395-36731414 | None:intergenic | 35.0% | |
| GATACCATTGGATTATACCT+TGG | - | chr7.3:36729216-36729235 | None:intergenic | 35.0% | |
| GCAATGTCTACACATCTAAA+TGG | + | chr7.3:36729883-36729902 | MS.gene94666:intron | 35.0% | |
| GGAAGAACAAATGAACATTG+TGG | + | chr7.3:36730748-36730767 | MS.gene94666:CDS | 35.0% | |
| TATTCTTCAATGGGAACATG+AGG | - | chr7.3:36730266-36730285 | None:intergenic | 35.0% | |
| ! | ATAGTATTGAGGGGATATTC+TGG | + | chr7.3:36729650-36729669 | MS.gene94666:CDS | 35.0% |
| ! | CTTGGTGATTAGTTAGTTAG+AGG | - | chr7.3:36729312-36729331 | None:intergenic | 35.0% |
| ! | GTGATTAGTTAGTTAGAGGT+TGG | - | chr7.3:36729308-36729327 | None:intergenic | 35.0% |
| ! | TCTTGATGAAGTTTTCCCTA+AGG | + | chr7.3:36729700-36729719 | MS.gene94666:CDS | 35.0% |
| !! | CTTGATTTGTACTTCACTGA+TGG | - | chr7.3:36730564-36730583 | None:intergenic | 35.0% |
| !!! | AGTTTTGATAATGGTGGTTG+GGG | + | chr7.3:36728981-36729000 | MS.gene94666:CDS | 35.0% |
| !!! | CAGATGAGTTTTGATAATGG+TGG | + | chr7.3:36728975-36728994 | MS.gene94666:CDS | 35.0% |
| !!! | GAGTTTTGATAATGGTGGTT+GGG | + | chr7.3:36728980-36728999 | MS.gene94666:CDS | 35.0% |
| !!! | GTTGGAGAATTTTTTGCAGT+AGG | - | chr7.3:36729290-36729309 | None:intergenic | 35.0% |
| !!! | TGAGTTTTGATAATGGTGGT+TGG | + | chr7.3:36728979-36728998 | MS.gene94666:CDS | 35.0% |
| ACCATTGGATTATACCTTGG+AGG | - | chr7.3:36729213-36729232 | None:intergenic | 40.0% | |
| AGTGACATCCAATGCAAACT+TGG | - | chr7.3:36731371-36731390 | None:intergenic | 40.0% | |
| ATGAAGTTGAGTCTAACGGA+AGG | + | chr7.3:36731138-36731157 | MS.gene94666:intron | 40.0% | |
| ATGGAATTCAAGACGTGCTT+TGG | + | chr7.3:36729673-36729692 | MS.gene94666:CDS | 40.0% | |
| ATTGGAAGCCAAGTTTGCAT+TGG | + | chr7.3:36731360-36731379 | MS.gene94666:CDS | 40.0% | |
| ATTTGTACTTCACTGATGGG+AGG | - | chr7.3:36730560-36730579 | None:intergenic | 40.0% | |
| GAGAGGTGAGAAATATAAGG+CGG | - | chr7.3:36730538-36730557 | None:intergenic | 40.0% | |
| GAGGAGAGGTGAGAAATATA+AGG | - | chr7.3:36730541-36730560 | None:intergenic | 40.0% | |
| TATAGGCGGACATAGTATTG+AGG | + | chr7.3:36729639-36729658 | MS.gene94666:intron | 40.0% | |
| TATTGAGGGGATATTCTGGA+TGG | + | chr7.3:36729654-36729673 | MS.gene94666:CDS | 40.0% | |
| TCCTCCAAGGTATAATCCAA+TGG | + | chr7.3:36729209-36729228 | MS.gene94666:intron | 40.0% | |
| TGCTTATGTCCAACCATCAT+TGG | + | chr7.3:36730184-36730203 | MS.gene94666:CDS | 40.0% | |
| TTTCTTACAGTATCCCTAGG+AGG | + | chr7.3:36731459-36731478 | MS.gene94666:CDS | 40.0% | |
| ! | AGACCTCAAATCGTGCTATT+TGG | + | chr7.3:36728939-36728958 | MS.gene94666:CDS | 40.0% |
| ! | AGGAAGCAAGGTAGTATTGA+AGG | + | chr7.3:36731310-36731329 | MS.gene94666:CDS | 40.0% |
| ! | ATAGGCGGACATAGTATTGA+GGG | + | chr7.3:36729640-36729659 | MS.gene94666:intron | 40.0% |
| AATGCCACGTAGATGTGAGT+TGG | - | chr7.3:36731051-36731070 | None:intergenic | 45.0% | |
| ATGCCACGTAGATGTGAGTT+GGG | - | chr7.3:36731050-36731069 | None:intergenic | 45.0% | |
| GAATTCAAGACGTGCTTTGG+AGG | + | chr7.3:36729676-36729695 | MS.gene94666:CDS | 45.0% | |
| GAGCCAAATAGCACGATTTG+AGG | - | chr7.3:36728945-36728964 | None:intergenic | 45.0% | |
| GCTTCCAATCTGCTTCTCTA+AGG | - | chr7.3:36731349-36731368 | None:intergenic | 45.0% | |
| GGAGTTCATTTGTCAGCTGA+AGG | + | chr7.3:36731290-36731309 | MS.gene94666:CDS | 45.0% | |
| GGCGTTTCAAACGATACCAT+TGG | - | chr7.3:36729228-36729247 | None:intergenic | 45.0% | |
| TAATCTCTGGTCTGCAATCC+AGG | + | chr7.3:36730825-36730844 | MS.gene94666:CDS | 45.0% | |
| TATTACCCTCCAAGTGCAGA+TGG | + | chr7.3:36731419-36731438 | MS.gene94666:CDS | 45.0% | |
| TCTGCACTTGGAGGGTAATA+TGG | - | chr7.3:36731419-36731438 | None:intergenic | 45.0% | |
| TGGAATATATGCTAGGGCAC+TGG | + | chr7.3:36730768-36730787 | MS.gene94666:CDS | 45.0% | |
| TTTGTCAGCTGAAGGAAGCA+AGG | + | chr7.3:36731298-36731317 | MS.gene94666:CDS | 45.0% | |
| ! | AGCACGATTTGAGGTCTCAT+TGG | - | chr7.3:36728936-36728955 | None:intergenic | 45.0% |
| ! | CAATGCTTTTCAGAGCCTCT+CGG | + | chr7.3:36730505-36730524 | MS.gene94666:intron | 45.0% |
| ! | TAGGCGGACATAGTATTGAG+GGG | + | chr7.3:36729641-36729660 | MS.gene94666:intron | 45.0% |
| !! | AATATATGCTAGGGCACTGG+TGG | + | chr7.3:36730771-36730790 | MS.gene94666:CDS | 45.0% |
| !! | TTAAAATAAAAAACAATTAT+TGG | - | chr7.3:36729785-36729804 | None:intergenic | 5.0% |
| ACATGAGGACCAAGACCAGA+TGG | - | chr7.3:36730251-36730270 | None:intergenic | 50.0% | |
| CAATCCAGGAAAGAGAGGAC+TGG | + | chr7.3:36730839-36730858 | MS.gene94666:CDS | 50.0% | |
| CATGAGGACCAAGACCAGAT+GGG | - | chr7.3:36730250-36730269 | None:intergenic | 50.0% | |
| CCCATTGCAAATGCCTCCTA+GGG | - | chr7.3:36731475-36731494 | None:intergenic | 50.0% | |
| CGGCAGCAGCTAACAAGATT+TGG | - | chr7.3:36730987-36731006 | None:intergenic | 50.0% | |
| CTAACCAGTCCTCTCTTTCC+TGG | - | chr7.3:36730846-36730865 | None:intergenic | 50.0% | |
| GGGTCCTTAGAGAAGCAGAT+TGG | + | chr7.3:36731342-36731361 | MS.gene94666:CDS | 50.0% | |
| GTCTGCAATCCAGGAAAGAG+AGG | + | chr7.3:36730834-36730853 | MS.gene94666:CDS | 50.0% | |
| TAAGGCGGATATGATCCGAG+AGG | - | chr7.3:36730523-36730542 | None:intergenic | 50.0% | |
| TACTTCACTGATGGGAGGAG+AGG | - | chr7.3:36730555-36730574 | None:intergenic | 50.0% | |
| TCCCATTGCAAATGCCTCCT+AGG | - | chr7.3:36731476-36731495 | None:intergenic | 50.0% | |
| TCTTCCAGTCTGTGTTGCAC+TGG | - | chr7.3:36730734-36730753 | None:intergenic | 50.0% | |
| TGCCACGTAGATGTGAGTTG+GGG | - | chr7.3:36731049-36731068 | None:intergenic | 50.0% | |
| TGGTTCCATCTGCACTTGGA+GGG | - | chr7.3:36731427-36731446 | None:intergenic | 50.0% | |
| !! | CCCTAGGAGGCATTTGCAAT+GGG | + | chr7.3:36731472-36731491 | MS.gene94666:CDS | 50.0% |
| !! | TCCCTAGGAGGCATTTGCAA+TGG | + | chr7.3:36731471-36731490 | MS.gene94666:CDS | 50.0% |
| AGGACCAAGACCAGATGGGT+GGG | - | chr7.3:36730246-36730265 | None:intergenic | 55.0% | |
| GACCCCAACTCACATCTACG+TGG | + | chr7.3:36731044-36731063 | MS.gene94666:intron | 55.0% | |
| GAGTCCAGTGCAACACAGAC+TGG | + | chr7.3:36730727-36730746 | MS.gene94666:intron | 55.0% | |
| GTGGTGGTTCCATCTGCACT+TGG | - | chr7.3:36731431-36731450 | None:intergenic | 55.0% | |
| GTGGTTCCATCTGCACTTGG+AGG | - | chr7.3:36731428-36731447 | None:intergenic | 55.0% | |
| TCAATTCACCCCCACCCATC+TGG | + | chr7.3:36730233-36730252 | MS.gene94666:CDS | 55.0% | |
| GACCAAGACCAGATGGGTGG+GGG | - | chr7.3:36730244-36730263 | None:intergenic | 60.0% | |
| GAGGACCAAGACCAGATGGG+TGG | - | chr7.3:36730247-36730266 | None:intergenic | 60.0% | |
| GGACCAAGACCAGATGGGTG+GGG | - | chr7.3:36730245-36730264 | None:intergenic | 60.0% | |
| CACCCCCACCCATCTGGTCT+TGG | + | chr7.3:36730239-36730258 | MS.gene94666:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7.3 | gene | 36728924 | 36731502 | 36728924 | ID=MS.gene94666 |
| chr7.3 | mRNA | 36728924 | 36731502 | 36728924 | ID=MS.gene94666.t1;Parent=MS.gene94666 |
| chr7.3 | exon | 36728924 | 36729034 | 36728924 | ID=MS.gene94666.t1.exon1;Parent=MS.gene94666.t1 |
| chr7.3 | CDS | 36728924 | 36729034 | 36728924 | ID=cds.MS.gene94666.t1;Parent=MS.gene94666.t1 |
| chr7.3 | exon | 36729644 | 36729721 | 36729644 | ID=MS.gene94666.t1.exon2;Parent=MS.gene94666.t1 |
| chr7.3 | CDS | 36729644 | 36729721 | 36729644 | ID=cds.MS.gene94666.t1;Parent=MS.gene94666.t1 |
| chr7.3 | exon | 36730182 | 36730322 | 36730182 | ID=MS.gene94666.t1.exon3;Parent=MS.gene94666.t1 |
| chr7.3 | CDS | 36730182 | 36730322 | 36730182 | ID=cds.MS.gene94666.t1;Parent=MS.gene94666.t1 |
| chr7.3 | exon | 36730518 | 36730594 | 36730518 | ID=MS.gene94666.t1.exon4;Parent=MS.gene94666.t1 |
| chr7.3 | CDS | 36730518 | 36730594 | 36730518 | ID=cds.MS.gene94666.t1;Parent=MS.gene94666.t1 |
| chr7.3 | exon | 36730735 | 36730878 | 36730735 | ID=MS.gene94666.t1.exon5;Parent=MS.gene94666.t1 |
| chr7.3 | CDS | 36730735 | 36730878 | 36730735 | ID=cds.MS.gene94666.t1;Parent=MS.gene94666.t1 |
| chr7.3 | exon | 36731286 | 36731502 | 36731286 | ID=MS.gene94666.t1.exon6;Parent=MS.gene94666.t1 |
| chr7.3 | CDS | 36731286 | 36731502 | 36731286 | ID=cds.MS.gene94666.t1;Parent=MS.gene94666.t1 |
| Gene Sequence |
| Protein sequence |
