Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94801.t1 | XP_013468383.1 | 94.3 | 843 | 42 | 2 | 1 | 839 | 1 | 841 | 0.00E+00 | 1532.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94801.t1 | A0A072VWH9 | 94.3 | 843 | 42 | 2 | 1 | 839 | 1 | 841 | 0.0e+00 | 1532.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene059017 | MS.gene94801 | 0.813672 | 2.27E-51 | -1.69E-46 |
| MS.gene060559 | MS.gene94801 | 0.805792 | 1.12E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94801.t1 | MTR_1g069190 | 94.425 | 843 | 41 | 2 | 1 | 839 | 1 | 841 | 0.0 | 1526 |
| MS.gene94801.t1 | MTR_7g099410 | 56.887 | 893 | 317 | 23 | 1 | 839 | 22 | 900 | 0.0 | 821 |
| MS.gene94801.t1 | MTR_7g099410 | 56.887 | 893 | 317 | 23 | 1 | 839 | 103 | 981 | 0.0 | 820 |
| MS.gene94801.t1 | MTR_1g067570 | 28.438 | 429 | 227 | 18 | 1 | 382 | 73 | 468 | 7.52e-18 | 89.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94801.t1 | AT4G28760 | 34.894 | 897 | 452 | 29 | 1 | 837 | 99 | 923 | 3.71e-117 | 378 |
| MS.gene94801.t1 | AT4G28760 | 34.894 | 897 | 452 | 29 | 1 | 837 | 99 | 923 | 3.71e-117 | 378 |
| MS.gene94801.t1 | AT5G43880 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 3.24e-86 | 293 |
| MS.gene94801.t1 | AT5G43880 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 3.24e-86 | 293 |
| MS.gene94801.t1 | AT5G43880 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 3.24e-86 | 293 |
| MS.gene94801.t1 | AT5G43880 | 34.152 | 855 | 399 | 36 | 1 | 817 | 77 | 805 | 3.24e-86 | 293 |
| MS.gene94801.t1 | AT2G20240 | 33.333 | 780 | 341 | 26 | 87 | 836 | 82 | 712 | 1.06e-83 | 283 |
| MS.gene94801.t1 | AT3G53540 | 34.884 | 172 | 88 | 5 | 1 | 162 | 72 | 229 | 4.02e-15 | 80.5 |
| MS.gene94801.t1 | AT3G53540 | 34.884 | 172 | 88 | 5 | 1 | 162 | 103 | 260 | 4.20e-15 | 80.5 |
Find 198 sgRNAs with CRISPR-Local
Find 262 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGACATGTATGGTCATTT+AGG | 0.154963 | 1.4:-55623971 | MS.gene94801:CDS |
| CCTTATTCTACACAATCTTT+AGG | 0.208775 | 1.4:-55623125 | MS.gene94801:CDS |
| TCAAGAGGGTTCATGTTTAA+TGG | 0.218673 | 1.4:-55620907 | MS.gene94801:CDS |
| TAATGTAGTTGCTAAATTAA+TGG | 0.232485 | 1.4:-55624062 | MS.gene94801:CDS |
| TGGTGATTTGTCAATTAAAT+TGG | 0.255525 | 1.4:+55621358 | None:intergenic |
| TTGCTATTAATTCATTCATT+TGG | 0.255927 | 1.4:+55620871 | None:intergenic |
| AATGTAGTTGCTAAATTAAT+GGG | 0.258803 | 1.4:-55624061 | MS.gene94801:CDS |
| TTCCTTAGACACTAAGTTAG+AGG | 0.280175 | 1.4:-55621240 | MS.gene94801:CDS |
| CACCAATGCCAAGGCATTCT+TGG | 0.282646 | 1.4:-55623172 | MS.gene94801:CDS |
| CTTATTCTACACAATCTTTA+GGG | 0.283530 | 1.4:-55623124 | MS.gene94801:CDS |
| CAAATGGGATGAAGTTTGTT+TGG | 0.291147 | 1.4:-55620851 | MS.gene94801:CDS |
| AATTTAGCAACTACATTAGA+TGG | 0.294516 | 1.4:+55624067 | None:intergenic |
| GGAGATTCTAACACTGATAT+TGG | 0.294543 | 1.4:+55621747 | None:intergenic |
| TTCTCAGGCCTTCATGCATT+TGG | 0.296383 | 1.4:+55623297 | None:intergenic |
| CCTAAAGATTGTGTAGAATA+AGG | 0.296581 | 1.4:+55623125 | None:intergenic |
| TTCGGCAATGACAAATCTTC+TGG | 0.299484 | 1.4:-55623569 | MS.gene94801:CDS |
| TGCTATTAATTCATTCATTT+GGG | 0.311745 | 1.4:+55620872 | None:intergenic |
| AGTAAGAAATCATCATTTAA+AGG | 0.317903 | 1.4:-55622714 | MS.gene94801:CDS |
| GAATAAAACTTTACATTCTT+CGG | 0.320352 | 1.4:-55623264 | MS.gene94801:CDS |
| AACAAATGATCTTAAGGCTT+TGG | 0.324183 | 1.4:-55623414 | MS.gene94801:CDS |
| AATCTCTTTAGCCACTTCTA+TGG | 0.332582 | 1.4:+55623325 | None:intergenic |
| GTATGGGAGAACAGGAATTA+TGG | 0.340913 | 1.4:-55623488 | MS.gene94801:CDS |
| ATCCTCTAACTTAGTGTCTA+AGG | 0.342936 | 1.4:+55621238 | None:intergenic |
| CTTTGAGGCGATGGATTTGT+TGG | 0.343660 | 1.4:+55623386 | None:intergenic |
| AAGAATCTTCATCCCATGAT+AGG | 0.352056 | 1.4:+55621312 | None:intergenic |
| CTTCTCTTGGCCTCATTAAG+AGG | 0.356613 | 1.4:+55621059 | None:intergenic |
| TGACAAATCATATCATGATT+TGG | 0.357422 | 1.4:-55623204 | MS.gene94801:CDS |
| TAATCAACCTGTTCTGTGCT+TGG | 0.362030 | 1.4:+55623875 | None:intergenic |
| CTTCTAATCACCGATAAATT+CGG | 0.363877 | 1.4:+55624013 | None:intergenic |
| GTCATGACATCTAACGAAAA+AGG | 0.364074 | 1.4:-55623032 | MS.gene94801:CDS |
| ACTATCCATTAAAACCTCTA+AGG | 0.368536 | 1.4:-55621268 | MS.gene94801:CDS |
| GAGAATGGAGATTGATGCTT+TGG | 0.368829 | 1.4:-55620751 | MS.gene94801:CDS |
| ATGAATGAATTAATAGCAAA+TGG | 0.370571 | 1.4:-55620867 | MS.gene94801:CDS |
| AAGACATGTATGGTCATTTA+GGG | 0.374102 | 1.4:-55623970 | MS.gene94801:CDS |
| ATCAAACCTTTGAAGATGTT+CGG | 0.376387 | 1.4:-55623587 | MS.gene94801:CDS |
| TGTTTCGGTGGCAATAGTTT+CGG | 0.382934 | 1.4:+55622611 | None:intergenic |
| TCTAAGGAACAAGTCCTTAG+AGG | 0.385073 | 1.4:+55621254 | None:intergenic |
| AGAATGGAGATTGATGCTTT+GGG | 0.385840 | 1.4:-55620750 | MS.gene94801:CDS |
| CAAAGTTTCTATCAGAGAAA+TGG | 0.385972 | 1.4:-55623368 | MS.gene94801:CDS |
| AACATTGGAAAGTGGAAGAT+AGG | 0.388053 | 1.4:-55623937 | MS.gene94801:CDS |
| AAAAGGAGAGCCGAATTTAT+CGG | 0.390146 | 1.4:-55624023 | MS.gene94801:CDS |
| TTGGAAGTTGTTGGCTATGA+TGG | 0.400242 | 1.4:-55620984 | MS.gene94801:CDS |
| TTTCTCTGATAGAAACTTTG+AGG | 0.402390 | 1.4:+55623371 | None:intergenic |
| AAATGGGATGAAGTTTGTTT+GGG | 0.403555 | 1.4:-55620850 | MS.gene94801:CDS |
| TCATTTATGTCCCTCAATGA+TGG | 0.404068 | 1.4:+55621101 | None:intergenic |
| CATCTTCAAATTGCTTCGAT+TGG | 0.408190 | 1.4:+55623720 | None:intergenic |
| ACCAATGCCAAGGCATTCTT+GGG | 0.408772 | 1.4:-55623171 | MS.gene94801:CDS |
| TCCACTTTCCAATGTTTCAA+TGG | 0.409462 | 1.4:+55623944 | None:intergenic |
| TTGTGTTAATGCTGCACTAT+TGG | 0.418432 | 1.4:-55621003 | MS.gene94801:CDS |
| AAGCTCAAACAATGAACTCT+TGG | 0.423027 | 1.4:-55623684 | MS.gene94801:CDS |
| AGGAAAGAGGTTGTGCAGAG+TGG | 0.423258 | 1.4:-55620789 | MS.gene94801:CDS |
| TACTGATGGAACTGATGTTT+CGG | 0.425769 | 1.4:+55622596 | None:intergenic |
| GTAAGAAATCATCATTTAAA+GGG | 0.426376 | 1.4:-55622713 | MS.gene94801:CDS |
| ATGGGTCCAATGGGCTTTCA+AGG | 0.426820 | 1.4:+55621120 | None:intergenic |
| GGGTGGGGACAGTCACAGCC+TGG | 0.428898 | 1.4:-55620829 | MS.gene94801:CDS |
| ATTATGATCAAGCAGCTGTA+TGG | 0.429931 | 1.4:-55623505 | MS.gene94801:CDS |
| CCCTCAATGATGGGTCCAAT+GGG | 0.432400 | 1.4:+55621111 | None:intergenic |
| GTTCCATCAGTAAATTCATC+TGG | 0.434878 | 1.4:-55622585 | MS.gene94801:CDS |
| AGATAGGTTTATGATGGATA+AGG | 0.434947 | 1.4:-55623921 | MS.gene94801:CDS |
| GTAAATTCATCTGGAGTCCT+TGG | 0.441528 | 1.4:-55622576 | MS.gene94801:CDS |
| AAGCAGCTGTATGGGAGAAC+AGG | 0.444633 | 1.4:-55623496 | MS.gene94801:CDS |
| TCATCATCCAAGCACAGAAC+AGG | 0.447661 | 1.4:-55623882 | MS.gene94801:CDS |
| GATGAAGTTTGTTTGGGGTG+GGG | 0.447920 | 1.4:-55620844 | MS.gene94801:CDS |
| TGGGAGAACAAATGATCTTA+AGG | 0.453216 | 1.4:-55623420 | MS.gene94801:CDS |
| TCATTTGTTCTCCCAGGACT+AGG | 0.456729 | 1.4:+55623428 | None:intergenic |
| GGATGAAGTTTGTTTGGGGT+GGG | 0.457347 | 1.4:-55620845 | MS.gene94801:CDS |
| TCCTTGGAATGCACGAAAGA+TGG | 0.457734 | 1.4:-55621696 | MS.gene94801:CDS |
| AGAAAATGTTGTTAGGAAAG+AGG | 0.458595 | 1.4:-55620802 | MS.gene94801:CDS |
| TGGTTGTAGAAAATGTTGTT+AGG | 0.459275 | 1.4:-55620809 | MS.gene94801:CDS |
| TGTGCAGAGTGGGTTGGTTG+AGG | 0.460054 | 1.4:-55620778 | MS.gene94801:CDS |
| GTCAAATGAGTTCTCATCAC+TGG | 0.460647 | 1.4:+55623223 | None:intergenic |
| CAATACAGCTCATGAATCCT+TGG | 0.464219 | 1.4:-55621712 | MS.gene94801:CDS |
| GGCTTTGACTCATTCAGTCC+AGG | 0.465246 | 1.4:+55621813 | None:intergenic |
| ACCACTATTCGAGTAGATTC+CGG | 0.465298 | 1.4:+55623458 | None:intergenic |
| CAGTGGCTAGGACCCTATCA+TGG | 0.471424 | 1.4:-55621325 | MS.gene94801:CDS |
| TCATAGACTGTTGAAGATGC+AGG | 0.472164 | 1.4:+55622801 | None:intergenic |
| AACGTGTTCTCCTGAGTCCT+CGG | 0.472642 | 1.4:-55623096 | MS.gene94801:CDS |
| GATAGGTTTATGATGGATAA+GGG | 0.474776 | 1.4:-55623920 | MS.gene94801:CDS |
| GGGCTTGAAACCCTTTCAAA+AGG | 0.477681 | 1.4:-55624040 | MS.gene94801:CDS |
| GGAAAGAGGTTGTGCAGAGT+GGG | 0.478282 | 1.4:-55620788 | MS.gene94801:CDS |
| TACATTAGATGGACTGTGCT+TGG | 0.482853 | 1.4:+55624078 | None:intergenic |
| GTGTCGAGAAACTCTACTTT+GGG | 0.485906 | 1.4:-55622990 | MS.gene94801:CDS |
| TCAATTAAATTGGACTTCAT+CGG | 0.485939 | 1.4:+55621368 | None:intergenic |
| TCCGGAATCTACTCGAATAG+TGG | 0.486429 | 1.4:-55623459 | MS.gene94801:CDS |
| CAAACAATGAACTCTTGGTC+AGG | 0.487112 | 1.4:-55623679 | MS.gene94801:CDS |
| GAACAGGTTGATTACAAAGA+TGG | 0.487334 | 1.4:-55623866 | MS.gene94801:CDS |
| GAAGCAATTTGAAGATGCAT+TGG | 0.489886 | 1.4:-55623714 | MS.gene94801:CDS |
| TGTGTCGAGAAACTCTACTT+TGG | 0.491632 | 1.4:-55622991 | MS.gene94801:CDS |
| ACTGTTGAAGATGCAGGGTC+AGG | 0.493191 | 1.4:+55622807 | None:intergenic |
| TGATAGAAACTTTGAGGCGA+TGG | 0.494215 | 1.4:+55623377 | None:intergenic |
| CATTTATGTCCCTCAATGAT+GGG | 0.494789 | 1.4:+55621102 | None:intergenic |
| TTTGGAATCTCTGGCACCAA+GGG | 0.495428 | 1.4:+55621792 | None:intergenic |
| GAAAGAGTAAGAAGAAGGAT+AGG | 0.496544 | 1.4:-55623547 | MS.gene94801:CDS |
| CCCATTGGACCCATCATTGA+GGG | 0.497319 | 1.4:-55621111 | MS.gene94801:CDS |
| GGGATGAAGTTTGTTTGGGG+TGG | 0.498767 | 1.4:-55620846 | MS.gene94801:CDS |
| AGAAACGACTTTCTGAAAGA+TGG | 0.500107 | 1.4:-55623058 | MS.gene94801:CDS |
| GATTCTCCTCAAAACAATTG+TGG | 0.500159 | 1.4:-55622837 | MS.gene94801:CDS |
| TCCCAAGAATGCCTTGGCAT+TGG | 0.500183 | 1.4:+55623170 | None:intergenic |
| GTGGTATTGAAGCCTAGTCC+TGG | 0.500707 | 1.4:-55623440 | MS.gene94801:CDS |
| TTAAGATCATTTGTTCTCCC+AGG | 0.502592 | 1.4:+55623422 | None:intergenic |
| AGATGTTGATGAGGGGAAGA+TGG | 0.504294 | 1.4:-55623801 | MS.gene94801:CDS |
| TTCTACACAATCTTTAGGGC+GGG | 0.506332 | 1.4:-55623120 | MS.gene94801:CDS |
| TCCCTCAATGATGGGTCCAA+TGG | 0.507615 | 1.4:+55621110 | None:intergenic |
| GCTGTATTGTAATCTTCAAA+TGG | 0.510016 | 1.4:+55621726 | None:intergenic |
| GTTGGTTGAGGTTATGAGAA+TGG | 0.510683 | 1.4:-55620766 | MS.gene94801:CDS |
| TCAAATTCCCTCTACTCCAC+AGG | 0.512881 | 1.4:-55623633 | MS.gene94801:CDS |
| ATTCTCCTCAAAACAATTGT+GGG | 0.513750 | 1.4:-55622836 | MS.gene94801:CDS |
| ACCATCTTTCGTGCATTCCA+AGG | 0.518813 | 1.4:+55621695 | None:intergenic |
| AATAAGGACTGCCACATACA+TGG | 0.520139 | 1.4:+55623141 | None:intergenic |
| TAGGGTGGCCATTGAAACAT+TGG | 0.520221 | 1.4:-55623952 | MS.gene94801:CDS |
| GCTGCACTATTGGAAGTTGT+TGG | 0.521163 | 1.4:-55620993 | MS.gene94801:CDS |
| AGTGGAAGATAGGTTTATGA+TGG | 0.522613 | 1.4:-55623927 | MS.gene94801:CDS |
| GATTATTATCAAGACATGTA+TGG | 0.523774 | 1.4:-55623980 | MS.gene94801:CDS |
| TGAATGAATTAATAGCAAAT+GGG | 0.524504 | 1.4:-55620866 | MS.gene94801:CDS |
| TTATGATCAAGCAGCTGTAT+GGG | 0.524672 | 1.4:-55623504 | MS.gene94801:CDS |
| TGGAGGGAAGATGTTGATGA+GGG | 0.531365 | 1.4:-55623809 | MS.gene94801:CDS |
| CTCATCACTGGAATAGCCAC+TGG | 0.537890 | 1.4:+55623235 | None:intergenic |
| TGAACCCTCTTGAACAAAGA+AGG | 0.540265 | 1.4:+55620917 | None:intergenic |
| CTAGCCACTGATTCTATATG+TGG | 0.540349 | 1.4:+55621338 | None:intergenic |
| TTCTGGAAAGAGTAAGAAGA+AGG | 0.543740 | 1.4:-55623552 | MS.gene94801:CDS |
| TCTCAAAGCTTCAATGTTGG+TGG | 0.547700 | 1.4:-55622543 | MS.gene94801:CDS |
| CATTCTTCGGTATTCTCCAG+TGG | 0.549767 | 1.4:-55623251 | MS.gene94801:CDS |
| GCTTTGGGGAGGGAAATAGA+AGG | 0.550557 | 1.4:-55620735 | MS.gene94801:CDS |
| AAGGTCCTTCTTTGTTCAAG+AGG | 0.550595 | 1.4:-55620922 | MS.gene94801:CDS |
| GGAGATTGATGCTTTGGGGA+GGG | 0.550626 | 1.4:-55620745 | MS.gene94801:CDS |
| CTGTACTCAGCCTCTTAATG+AGG | 0.553577 | 1.4:-55621069 | MS.gene94801:CDS |
| GTATTCCCTTGAAAGCCCAT+TGG | 0.555850 | 1.4:-55621126 | MS.gene94801:CDS |
| TGCATCATCCTGTGGAGTAG+AGG | 0.559463 | 1.4:+55623625 | None:intergenic |
| GCATCATCCTGTGGAGTAGA+GGG | 0.559621 | 1.4:+55623626 | None:intergenic |
| ATGTTGCAGATTTCTTTACA+AGG | 0.559791 | 1.4:+55622949 | None:intergenic |
| TGGGATTGCATCCATGTATG+TGG | 0.563606 | 1.4:-55623152 | MS.gene94801:CDS |
| AGGTCCTTCTTTGTTCAAGA+GGG | 0.565387 | 1.4:-55620921 | MS.gene94801:CDS |
| GTGGAGGGAAGATGTTGATG+AGG | 0.565512 | 1.4:-55623810 | MS.gene94801:CDS |
| GAACAAAGAAGGACCTTCTG+TGG | 0.566033 | 1.4:+55620928 | None:intergenic |
| TCATTGCCGAACATCTTCAA+AGG | 0.569896 | 1.4:+55623581 | None:intergenic |
| ATGTTTAATGGACCACATTG+TGG | 0.570896 | 1.4:-55620895 | MS.gene94801:CDS |
| GCCCATTGGACCCATCATTG+AGG | 0.570908 | 1.4:-55621112 | MS.gene94801:CDS |
| TGGAGATTGATGCTTTGGGG+AGG | 0.573132 | 1.4:-55620746 | MS.gene94801:CDS |
| AGAATCTTCATCCCATGATA+GGG | 0.573830 | 1.4:+55621313 | None:intergenic |
| CTCTTAATGAGGCCAAGAGA+AGG | 0.573920 | 1.4:-55621058 | MS.gene94801:CDS |
| ATGACTCATTTCACACAAGA+TGG | 0.574580 | 1.4:-55621148 | MS.gene94801:CDS |
| GCCATTGAAACATTGGAAAG+TGG | 0.577706 | 1.4:-55623945 | MS.gene94801:CDS |
| AGAGGTTGTGCAGAGTGGGT+TGG | 0.578519 | 1.4:-55620784 | MS.gene94801:CDS |
| GGATGCAATCTCAGAGAGGA+AGG | 0.583915 | 1.4:-55623832 | MS.gene94801:CDS |
| TCTATGCACACCGAGGACTC+AGG | 0.584334 | 1.4:+55623086 | None:intergenic |
| ACTCCAGATGAATTTACTGA+TGG | 0.584574 | 1.4:+55622582 | None:intergenic |
| AGTCTCTAGTGAACCACAAG+AGG | 0.584725 | 1.4:-55622487 | MS.gene94801:CDS |
| CAGGAATTATGGATACTCTC+CGG | 0.585899 | 1.4:-55623477 | MS.gene94801:CDS |
| ATGCAATCCCAAGAATGCCT+TGG | 0.586761 | 1.4:+55623164 | None:intergenic |
| ATCTCAGAGAGGAAGGTGGA+GGG | 0.587948 | 1.4:-55623825 | MS.gene94801:CDS |
| AGTGGCTAGGACCCTATCAT+GGG | 0.590425 | 1.4:-55621324 | MS.gene94801:CDS |
| AATCTCAGAGAGGAAGGTGG+AGG | 0.592424 | 1.4:-55623826 | MS.gene94801:CDS |
| ATTTGGAATCTCTGGCACCA+AGG | 0.593391 | 1.4:+55621791 | None:intergenic |
| TGTACTTGAATCCATAGAAG+TGG | 0.594058 | 1.4:-55623336 | MS.gene94801:CDS |
| TGGTATTGAAGCCTAGTCCT+GGG | 0.594500 | 1.4:-55623439 | MS.gene94801:CDS |
| TCATGGGATGAAGATTCTTG+TGG | 0.595361 | 1.4:-55621308 | MS.gene94801:CDS |
| ACTGAATGAGTCAAAGCCCT+TGG | 0.595715 | 1.4:-55621808 | MS.gene94801:CDS |
| AGGCCAAGAGAAGGAAAATG+AGG | 0.596909 | 1.4:-55621049 | MS.gene94801:CDS |
| GCATCATCAACACCGAGGCT+AGG | 0.600474 | 1.4:+55622777 | None:intergenic |
| TTTGAGACACATTATCTCCA+AGG | 0.601654 | 1.4:+55622559 | None:intergenic |
| AACAAAGAAGGACCTTCTGT+GGG | 0.601670 | 1.4:+55620929 | None:intergenic |
| CATTCATTTGGGCCACAATG+TGG | 0.603105 | 1.4:+55620883 | None:intergenic |
| TGAGTCCTCGGTGTGCATAG+AGG | 0.603550 | 1.4:-55623084 | MS.gene94801:CDS |
| ATGTAGTTGCTAAATTAATG+GGG | 0.607079 | 1.4:-55624060 | MS.gene94801:CDS |
| TGTGCAGTGGGACCCACAGA+AGG | 0.607104 | 1.4:-55620941 | MS.gene94801:CDS |
| TCACAAAGAACATGGCTCCA+AGG | 0.608900 | 1.4:-55622754 | MS.gene94801:CDS |
| TGTTGCAGATTTCTTTACAA+GGG | 0.609571 | 1.4:+55622950 | None:intergenic |
| TGGGTCCAATGGGCTTTCAA+GGG | 0.610068 | 1.4:+55621121 | None:intergenic |
| ATTACACTCCAAATGCATGA+AGG | 0.610756 | 1.4:-55623305 | MS.gene94801:CDS |
| ACAGTCTATGAACCTAGCCT+CGG | 0.617926 | 1.4:-55622789 | MS.gene94801:CDS |
| CATAGACTGTTGAAGATGCA+GGG | 0.622353 | 1.4:+55622802 | None:intergenic |
| TCTAACACTGATATTGGACT+AGG | 0.624156 | 1.4:+55621753 | None:intergenic |
| ATCACCACATATAGAATCAG+TGG | 0.630942 | 1.4:-55621342 | MS.gene94801:CDS |
| CACATATAGAATCAGTGGCT+AGG | 0.630949 | 1.4:-55621337 | MS.gene94801:CDS |
| AATTACTTCAAGATGTGCAG+TGG | 0.633827 | 1.4:-55620954 | MS.gene94801:CDS |
| GGAGGGAAGATGTTGATGAG+GGG | 0.637253 | 1.4:-55623808 | MS.gene94801:CDS |
| ATTACTTCAAGATGTGCAGT+GGG | 0.638167 | 1.4:-55620953 | MS.gene94801:CDS |
| ATGCACGAAAGATGGTCACA+TGG | 0.639883 | 1.4:-55621688 | MS.gene94801:CDS |
| ATTCTACACAATCTTTAGGG+CGG | 0.643315 | 1.4:-55623121 | MS.gene94801:CDS |
| AAGCTATGTCACCAATGCCA+AGG | 0.643366 | 1.4:-55623181 | MS.gene94801:CDS |
| TGCAATCTCAGAGAGGAAGG+TGG | 0.652012 | 1.4:-55623829 | MS.gene94801:CDS |
| TGCACGAAAGATGGTCACAT+GGG | 0.654570 | 1.4:-55621687 | MS.gene94801:intron |
| GAATGGAGATTGATGCTTTG+GGG | 0.655462 | 1.4:-55620749 | MS.gene94801:CDS |
| ACATGTATGGTCATTTAGGG+TGG | 0.658765 | 1.4:-55623967 | MS.gene94801:CDS |
| ACAAAGATGGATATGAAACA+TGG | 0.662592 | 1.4:-55623853 | MS.gene94801:CDS |
| AATGGGATGAAGTTTGTTTG+GGG | 0.665298 | 1.4:-55620849 | MS.gene94801:CDS |
| GTGTCTCAAAGCTTCAATGT+TGG | 0.674820 | 1.4:-55622546 | MS.gene94801:CDS |
| ATGTGATTTGCATCATCCTG+TGG | 0.677544 | 1.4:+55623617 | None:intergenic |
| TGATGGAACTGATGTTTCGG+TGG | 0.677793 | 1.4:+55622599 | None:intergenic |
| AGTGTGATCATGTCCTCTTG+TGG | 0.683426 | 1.4:+55622474 | None:intergenic |
| GAGGGACATAAATGACAACA+AGG | 0.687568 | 1.4:-55621093 | MS.gene94801:CDS |
| AGAGGACATGATCACACTAG+AGG | 0.690396 | 1.4:-55622469 | MS.gene94801:intron |
| AAAGAAATCTGCAACATCTG+TGG | 0.695639 | 1.4:-55622943 | MS.gene94801:CDS |
| GATGATGCTCACAAAGAACA+TGG | 0.702506 | 1.4:-55622762 | MS.gene94801:CDS |
| CAAAGAACATGGCTCCAAGG+TGG | 0.704136 | 1.4:-55622751 | MS.gene94801:CDS |
| CTTTGCCTCTATGCACACCG+AGG | 0.706128 | 1.4:+55623079 | None:intergenic |
| ACATGGATGCAATCTCAGAG+AGG | 0.725851 | 1.4:-55623836 | MS.gene94801:CDS |
| TGTGAGCATCATCAACACCG+AGG | 0.796608 | 1.4:+55622772 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATTAATTCCATTAATT+AGG | + | chr1.4:55622524-55622543 | None:intergenic | 10.0% |
| !!! | ATAAAACAAGTTTTTATCAA+GGG | + | chr1.4:55622713-55622732 | None:intergenic | 15.0% |
| !!! | TATAAAACAAGTTTTTATCA+AGG | + | chr1.4:55622714-55622733 | None:intergenic | 15.0% |
| !! | AAACAAATCAAAGATTTCAT+TGG | + | chr1.4:55622934-55622953 | None:intergenic | 20.0% |
| !! | AATGTAGTTGCTAAATTAAT+GGG | - | chr1.4:55620716-55620735 | MS.gene94801:CDS | 20.0% |
| !! | AGATAAAAGATCCTAAATAA+TGG | + | chr1.4:55622444-55622463 | None:intergenic | 20.0% |
| !! | AGTAAGAAATCATCATTTAA+AGG | - | chr1.4:55622063-55622082 | MS.gene94801:intron | 20.0% |
| !! | ATGAATGAATTAATAGCAAA+TGG | - | chr1.4:55623910-55623929 | MS.gene94801:CDS | 20.0% |
| !! | GAATAAAACTTTACATTCTT+CGG | - | chr1.4:55621513-55621532 | MS.gene94801:intron | 20.0% |
| !! | GTAAGAAATCATCATTTAAA+GGG | - | chr1.4:55622064-55622083 | MS.gene94801:intron | 20.0% |
| !! | TAATGTAGTTGCTAAATTAA+TGG | - | chr1.4:55620715-55620734 | MS.gene94801:CDS | 20.0% |
| !! | TCTTCTAGTGATATTTATTT+AGG | - | chr1.4:55622401-55622420 | MS.gene94801:intron | 20.0% |
| !! | TGAATGAATTAATAGCAAAT+GGG | - | chr1.4:55623911-55623930 | MS.gene94801:CDS | 20.0% |
| !! | TGCTATTAATTCATTCATTT+GGG | + | chr1.4:55623908-55623927 | None:intergenic | 20.0% |
| !! | TTCAAACTTAACCATTATTT+AGG | - | chr1.4:55622430-55622449 | MS.gene94801:intron | 20.0% |
| !!! | ATAATGGTTAAGTTTGAAAT+AGG | + | chr1.4:55622428-55622447 | None:intergenic | 20.0% |
| !!! | ATTGAGTTTTGCTTATATTT+TGG | - | chr1.4:55622818-55622837 | MS.gene94801:CDS | 20.0% |
| !!! | CTTGATAATAATCTTTTGTT+TGG | + | chr1.4:55620790-55620809 | None:intergenic | 20.0% |
| !!! | TTGCTATTAATTCATTCATT+TGG | + | chr1.4:55623909-55623928 | None:intergenic | 20.0% |
| ! | AACTCAAGATTTCACAATTA+TGG | + | chr1.4:55622480-55622499 | None:intergenic | 25.0% |
| ! | AATTTAGCAACTACATTAGA+TGG | + | chr1.4:55620713-55620732 | None:intergenic | 25.0% |
| ! | ATGTAGTTGCTAAATTAATG+GGG | - | chr1.4:55620717-55620736 | MS.gene94801:CDS | 25.0% |
| ! | CTTATTCTACACAATCTTTA+GGG | - | chr1.4:55621653-55621672 | MS.gene94801:intron | 25.0% |
| ! | GATTATTATCAAGACATGTA+TGG | - | chr1.4:55620797-55620816 | MS.gene94801:CDS | 25.0% |
| ! | TAAAAATGTCTGACTTCTAT+CGG | - | chr1.4:55623267-55623286 | MS.gene94801:CDS | 25.0% |
| ! | TAGAAAGTAGCAAATAGTTA+AGG | + | chr1.4:55623186-55623205 | None:intergenic | 25.0% |
| ! | TATTACACCAAAAAAACTAG+AGG | + | chr1.4:55622667-55622686 | None:intergenic | 25.0% |
| ! | TCAAAGATTTCATTGGTATA+TGG | + | chr1.4:55622927-55622946 | None:intergenic | 25.0% |
| ! | TCAATTAAATTGGACTTCAT+CGG | + | chr1.4:55623412-55623431 | None:intergenic | 25.0% |
| ! | TGACAAATCATATCATGATT+TGG | - | chr1.4:55621573-55621592 | MS.gene94801:intron | 25.0% |
| ! | TTCCAAATGAAAAACAAGAT+CGG | - | chr1.4:55623001-55623020 | MS.gene94801:CDS | 25.0% |
| ! | TTTATCAAATAAGAGCTTCT+TGG | + | chr1.4:55623160-55623179 | None:intergenic | 25.0% |
| !! | GTCAGACATTTTTAATGATT+TGG | + | chr1.4:55623261-55623280 | None:intergenic | 25.0% |
| !! | TGGTGATTTGTCAATTAAAT+TGG | + | chr1.4:55623422-55623441 | None:intergenic | 25.0% |
| !!! | AGATGAACTAGATTTTTTCT+TGG | + | chr1.4:55622130-55622149 | None:intergenic | 25.0% |
| !!! | ATGCTCATTTTTTCTTTGAA+AGG | + | chr1.4:55621916-55621935 | None:intergenic | 25.0% |
| AAAAAGGTCATCAAGAACAA+AGG | - | chr1.4:55621761-55621780 | MS.gene94801:CDS | 30.0% | |
| AAAGACACTGATAAAGAAAG+AGG | + | chr1.4:55623132-55623151 | None:intergenic | 30.0% | |
| AACAAATGATCTTAAGGCTT+TGG | - | chr1.4:55621363-55621382 | MS.gene94801:CDS | 30.0% | |
| AAGACATGTATGGTCATTTA+GGG | - | chr1.4:55620807-55620826 | MS.gene94801:CDS | 30.0% | |
| ACAAAGATGGATATGAAACA+TGG | - | chr1.4:55620924-55620943 | MS.gene94801:CDS | 30.0% | |
| ACTAAAAAACCCTATGTTTG+TGG | + | chr1.4:55622890-55622909 | None:intergenic | 30.0% | |
| ACTATCCATTAAAACCTCTA+AGG | - | chr1.4:55623509-55623528 | MS.gene94801:CDS | 30.0% | |
| AGAAAATGTTGTTAGGAAAG+AGG | - | chr1.4:55623975-55623994 | MS.gene94801:CDS | 30.0% | |
| ATGTTGCAGATTTCTTTACA+AGG | + | chr1.4:55621831-55621850 | None:intergenic | 30.0% | |
| ATTCTCCTCAAAACAATTGT+GGG | - | chr1.4:55621941-55621960 | MS.gene94801:intron | 30.0% | |
| CAAAGTTTCTATCAGAGAAA+TGG | - | chr1.4:55621409-55621428 | MS.gene94801:intron | 30.0% | |
| CCTAAAGATTGTGTAGAATA+AGG | + | chr1.4:55621655-55621674 | None:intergenic | 30.0% | |
| CCTTATTCTACACAATCTTT+AGG | - | chr1.4:55621652-55621671 | MS.gene94801:intron | 30.0% | |
| CTTCTAATCACCGATAAATT+CGG | + | chr1.4:55620767-55620786 | None:intergenic | 30.0% | |
| GCTGTATTGTAATCTTCAAA+TGG | + | chr1.4:55623054-55623073 | None:intergenic | 30.0% | |
| GTCACTCGGATAATAATAAT+AGG | + | chr1.4:55623359-55623378 | None:intergenic | 30.0% | |
| TAATATATCCTTCTGTGTGT+TGG | - | chr1.4:55622536-55622555 | MS.gene94801:CDS | 30.0% | |
| TCTCTTCTCTTCCTAATTAA+TGG | - | chr1.4:55622510-55622529 | MS.gene94801:CDS | 30.0% | |
| TGGTTGTAGAAAATGTTGTT+AGG | - | chr1.4:55623968-55623987 | MS.gene94801:CDS | 30.0% | |
| TGTTGCAGATTTCTTTACAA+GGG | + | chr1.4:55621830-55621849 | None:intergenic | 30.0% | |
| TTTCTCTGATAGAAACTTTG+AGG | + | chr1.4:55621409-55621428 | None:intergenic | 30.0% | |
| ! | AAATGGGATGAAGTTTGTTT+GGG | - | chr1.4:55623927-55623946 | MS.gene94801:CDS | 30.0% |
| ! | ACAAAATGTTTGGAGTTTGA+TGG | + | chr1.4:55622845-55622864 | None:intergenic | 30.0% |
| ! | ATCAAACCTTTGAAGATGTT+CGG | - | chr1.4:55621190-55621209 | MS.gene94801:CDS | 30.0% |
| ! | CAGATTTTCTTTGTTCTTCT+TGG | + | chr1.4:55621879-55621898 | None:intergenic | 30.0% |
| ! | TAACAACATTTTCTACAACC+AGG | + | chr1.4:55623969-55623988 | None:intergenic | 30.0% |
| ! | TTTTGTATGTATAGGATCAC+TGG | - | chr1.4:55623384-55623403 | MS.gene94801:CDS | 30.0% |
| !! | AGAGGTTTTAATGGATAGTA+AGG | + | chr1.4:55623508-55623527 | None:intergenic | 30.0% |
| !! | AGATAGGTTTATGATGGATA+AGG | - | chr1.4:55620856-55620875 | MS.gene94801:CDS | 30.0% |
| !! | GATAGGTTTATGATGGATAA+GGG | - | chr1.4:55620857-55620876 | MS.gene94801:CDS | 30.0% |
| !! | TATTCTTTTGATAGCTTCTC+AGG | + | chr1.4:55621498-55621517 | None:intergenic | 30.0% |
| !! | TGTTTTTCATTTGGAATCTC+TGG | + | chr1.4:55622997-55623016 | None:intergenic | 30.0% |
| !!! | ACAATCTCCTCTAGTTTTTT+TGG | - | chr1.4:55622657-55622676 | MS.gene94801:CDS | 30.0% |
| !!! | AGTTTTTATCAAGGGCATTT+TGG | + | chr1.4:55622705-55622724 | None:intergenic | 30.0% |
| !!! | GACACTTGTTTTGTATGTAT+AGG | - | chr1.4:55623376-55623395 | MS.gene94801:CDS | 30.0% |
| AAAAGGAGAGCCGAATTTAT+CGG | - | chr1.4:55620754-55620773 | MS.gene94801:CDS | 35.0% | |
| AAAGAAATCTGCAACATCTG+TGG | - | chr1.4:55621834-55621853 | MS.gene94801:intron | 35.0% | |
| AACATTGGAAAGTGGAAGAT+AGG | - | chr1.4:55620840-55620859 | MS.gene94801:CDS | 35.0% | |
| AAGAATCTTCATCCCATGAT+AGG | + | chr1.4:55623468-55623487 | None:intergenic | 35.0% | |
| AAGCTCAAACAATGAACTCT+TGG | - | chr1.4:55621093-55621112 | MS.gene94801:CDS | 35.0% | |
| AATCTCTTTAGCCACTTCTA+TGG | + | chr1.4:55621455-55621474 | None:intergenic | 35.0% | |
| AATTACTTCAAGATGTGCAG+TGG | - | chr1.4:55623823-55623842 | MS.gene94801:CDS | 35.0% | |
| ACCAATCATACATGTGACTT+TGG | + | chr1.4:55623301-55623320 | None:intergenic | 35.0% | |
| ACTCCAGATGAATTTACTGA+TGG | + | chr1.4:55622198-55622217 | None:intergenic | 35.0% | |
| AGAATCTTCATCCCATGATA+GGG | + | chr1.4:55623467-55623486 | None:intergenic | 35.0% | |
| AGAATGGAGATTGATGCTTT+GGG | - | chr1.4:55624027-55624046 | MS.gene94801:CDS | 35.0% | |
| AGTGGAAGATAGGTTTATGA+TGG | - | chr1.4:55620850-55620869 | MS.gene94801:CDS | 35.0% | |
| ATCACCACATATAGAATCAG+TGG | - | chr1.4:55623435-55623454 | MS.gene94801:CDS | 35.0% | |
| ATCCTCTAACTTAGTGTCTA+AGG | + | chr1.4:55623542-55623561 | None:intergenic | 35.0% | |
| ATGACTCATTTCACACAAGA+TGG | - | chr1.4:55623629-55623648 | MS.gene94801:CDS | 35.0% | |
| ATTACACTCCAAATGCATGA+AGG | - | chr1.4:55621472-55621491 | MS.gene94801:intron | 35.0% | |
| ATTACTTCAAGATGTGCAGT+GGG | - | chr1.4:55623824-55623843 | MS.gene94801:CDS | 35.0% | |
| ATTATGATCAAGCAGCTGTA+TGG | - | chr1.4:55621272-55621291 | MS.gene94801:CDS | 35.0% | |
| CAAAAACTACTATCAGCATC+TGG | - | chr1.4:55623583-55623602 | MS.gene94801:CDS | 35.0% | |
| CAAATAAGAGCTTCTTGGAA+TGG | + | chr1.4:55623155-55623174 | None:intergenic | 35.0% | |
| CAAGACATGTATGGTCATTT+AGG | - | chr1.4:55620806-55620825 | MS.gene94801:CDS | 35.0% | |
| CACTGATAAAGAAAGAGGTA+AGG | + | chr1.4:55623127-55623146 | None:intergenic | 35.0% | |
| CATCTTCAAATTGCTTCGAT+TGG | + | chr1.4:55621060-55621079 | None:intergenic | 35.0% | |
| CATTTATGTCCCTCAATGAT+GGG | + | chr1.4:55623678-55623697 | None:intergenic | 35.0% | |
| GAAAGAGTAAGAAGAAGGAT+AGG | - | chr1.4:55621230-55621249 | MS.gene94801:CDS | 35.0% | |
| GAAGCAATTTGAAGATGCAT+TGG | - | chr1.4:55621063-55621082 | MS.gene94801:CDS | 35.0% | |
| GATTCTCCTCAAAACAATTG+TGG | - | chr1.4:55621940-55621959 | MS.gene94801:intron | 35.0% | |
| GGAGATTCTAACACTGATAT+TGG | + | chr1.4:55623033-55623052 | None:intergenic | 35.0% | |
| GTCATGACATCTAACGAAAA+AGG | - | chr1.4:55621745-55621764 | MS.gene94801:CDS | 35.0% | |
| GTTCCATCAGTAAATTCATC+TGG | - | chr1.4:55622192-55622211 | MS.gene94801:intron | 35.0% | |
| TACAGACTTCCACAAACATA+GGG | - | chr1.4:55622878-55622897 | MS.gene94801:CDS | 35.0% | |
| TACTGATGGAACTGATGTTT+CGG | + | chr1.4:55622184-55622203 | None:intergenic | 35.0% | |
| TCAAGAGGGTTCATGTTTAA+TGG | - | chr1.4:55623870-55623889 | MS.gene94801:CDS | 35.0% | |
| TCATTTATGTCCCTCAATGA+TGG | + | chr1.4:55623679-55623698 | None:intergenic | 35.0% | |
| TCCAAAGTCACATGTATGAT+TGG | - | chr1.4:55623297-55623316 | MS.gene94801:CDS | 35.0% | |
| TCCACTTTCCAATGTTTCAA+TGG | + | chr1.4:55620836-55620855 | None:intergenic | 35.0% | |
| TCTAACACTGATATTGGACT+AGG | + | chr1.4:55623027-55623046 | None:intergenic | 35.0% | |
| TGGGAGAACAAATGATCTTA+AGG | - | chr1.4:55621357-55621376 | MS.gene94801:CDS | 35.0% | |
| TGTACTTGAATCCATAGAAG+TGG | - | chr1.4:55621441-55621460 | MS.gene94801:intron | 35.0% | |
| TTAAGATCATTTGTTCTCCC+AGG | + | chr1.4:55621358-55621377 | None:intergenic | 35.0% | |
| TTATGATCAAGCAGCTGTAT+GGG | - | chr1.4:55621273-55621292 | MS.gene94801:CDS | 35.0% | |
| TTCAGACCACACAAAATGTT+TGG | + | chr1.4:55622855-55622874 | None:intergenic | 35.0% | |
| TTCCTTAGACACTAAGTTAG+AGG | - | chr1.4:55623537-55623556 | MS.gene94801:CDS | 35.0% | |
| TTGTGTTAATGCTGCACTAT+TGG | - | chr1.4:55623774-55623793 | MS.gene94801:CDS | 35.0% | |
| ! | AATCTTGTGCTCGATTTTAC+AGG | - | chr1.4:55624090-55624109 | MS.gene94801:CDS | 35.0% |
| ! | AATGGGATGAAGTTTGTTTG+GGG | - | chr1.4:55623928-55623947 | MS.gene94801:CDS | 35.0% |
| ! | ACTTTTCTTAGTCAGCACAT+TGG | - | chr1.4:55622626-55622645 | MS.gene94801:CDS | 35.0% |
| ! | AGAAACGACTTTCTGAAAGA+TGG | - | chr1.4:55621719-55621738 | MS.gene94801:CDS | 35.0% |
| ! | ATGTTTAATGGACCACATTG+TGG | - | chr1.4:55623882-55623901 | MS.gene94801:CDS | 35.0% |
| ! | ATTCTACACAATCTTTAGGG+CGG | - | chr1.4:55621656-55621675 | MS.gene94801:intron | 35.0% |
| ! | CAAACTCCAAACATTTTGTG+TGG | - | chr1.4:55622846-55622865 | MS.gene94801:CDS | 35.0% |
| ! | CAAATGGGATGAAGTTTGTT+TGG | - | chr1.4:55623926-55623945 | MS.gene94801:CDS | 35.0% |
| ! | CAGATGCTGATAGTAGTTTT+TGG | + | chr1.4:55623585-55623604 | None:intergenic | 35.0% |
| ! | CATACAAAACAAGTGTCACT+CGG | + | chr1.4:55623373-55623392 | None:intergenic | 35.0% |
| ! | GCTGCTTGATCATAATTTTC+TGG | + | chr1.4:55621268-55621287 | None:intergenic | 35.0% |
| ! | TTCTGGAAAGAGTAAGAAGA+AGG | - | chr1.4:55621225-55621244 | MS.gene94801:CDS | 35.0% |
| ! | TTTGAGACACATTATCTCCA+AGG | + | chr1.4:55622221-55622240 | None:intergenic | 35.0% |
| !! | ATTTGTTTGTTTTCACAGCC+TGG | - | chr1.4:55622946-55622965 | MS.gene94801:CDS | 35.0% |
| !! | CAAGTCCTTAGAGGTTTTAA+TGG | + | chr1.4:55623517-55623536 | None:intergenic | 35.0% |
| !! | GAACAGGTTGATTACAAAGA+TGG | - | chr1.4:55620911-55620930 | MS.gene94801:CDS | 35.0% |
| !!! | GTGCTTGGAGTTTTTTTCTT+TGG | + | chr1.4:55620687-55620706 | None:intergenic | 35.0% |
| AACAAAGAAGGACCTTCTGT+GGG | + | chr1.4:55623851-55623870 | None:intergenic | 40.0% | |
| AAGGTCCTTCTTTGTTCAAG+AGG | - | chr1.4:55623855-55623874 | MS.gene94801:CDS | 40.0% | |
| AATAAGGACTGCCACATACA+TGG | + | chr1.4:55621639-55621658 | None:intergenic | 40.0% | |
| ACATGTATGGTCATTTAGGG+TGG | - | chr1.4:55620810-55620829 | MS.gene94801:CDS | 40.0% | |
| ACCACTATTCGAGTAGATTC+CGG | + | chr1.4:55621322-55621341 | None:intergenic | 40.0% | |
| ACTAGAGGAGATTGTCTACT+AGG | + | chr1.4:55622652-55622671 | None:intergenic | 40.0% | |
| AGGTCCTTCTTTGTTCAAGA+GGG | - | chr1.4:55623856-55623875 | MS.gene94801:CDS | 40.0% | |
| CAAACAATGAACTCTTGGTC+AGG | - | chr1.4:55621098-55621117 | MS.gene94801:CDS | 40.0% | |
| CAATACAGCTCATGAATCCT+TGG | - | chr1.4:55623065-55623084 | MS.gene94801:CDS | 40.0% | |
| CACATATAGAATCAGTGGCT+AGG | - | chr1.4:55623440-55623459 | MS.gene94801:CDS | 40.0% | |
| CAGGAATTATGGATACTCTC+CGG | - | chr1.4:55621300-55621319 | MS.gene94801:CDS | 40.0% | |
| CATAGACTGTTGAAGATGCA+GGG | + | chr1.4:55621978-55621997 | None:intergenic | 40.0% | |
| CTACAGACTTCCACAAACAT+AGG | - | chr1.4:55622877-55622896 | MS.gene94801:CDS | 40.0% | |
| GAATGGAGATTGATGCTTTG+GGG | - | chr1.4:55624028-55624047 | MS.gene94801:CDS | 40.0% | |
| GAGAATGGAGATTGATGCTT+TGG | - | chr1.4:55624026-55624045 | MS.gene94801:CDS | 40.0% | |
| GAGGGACATAAATGACAACA+AGG | - | chr1.4:55623684-55623703 | MS.gene94801:CDS | 40.0% | |
| GATGATGCTCACAAAGAACA+TGG | - | chr1.4:55622015-55622034 | MS.gene94801:intron | 40.0% | |
| GCCATTGAAACATTGGAAAG+TGG | - | chr1.4:55620832-55620851 | MS.gene94801:CDS | 40.0% | |
| GTATGGGAGAACAGGAATTA+TGG | - | chr1.4:55621289-55621308 | MS.gene94801:CDS | 40.0% | |
| GTCAAATGAGTTCTCATCAC+TGG | + | chr1.4:55621557-55621576 | None:intergenic | 40.0% | |
| GTGTCGAGAAACTCTACTTT+GGG | - | chr1.4:55621787-55621806 | MS.gene94801:CDS | 40.0% | |
| GTGTCTCAAAGCTTCAATGT+TGG | - | chr1.4:55622231-55622250 | MS.gene94801:intron | 40.0% | |
| GTTGGTTGAGGTTATGAGAA+TGG | - | chr1.4:55624011-55624030 | MS.gene94801:CDS | 40.0% | |
| TAATCAACCTGTTCTGTGCT+TGG | + | chr1.4:55620905-55620924 | None:intergenic | 40.0% | |
| TAGGAAGAGAAGAGACAGAT+AGG | + | chr1.4:55622505-55622524 | None:intergenic | 40.0% | |
| TATCCTTCTGTGTGTTGGAA+TGG | - | chr1.4:55622541-55622560 | MS.gene94801:CDS | 40.0% | |
| TCATAGACTGTTGAAGATGC+AGG | + | chr1.4:55621979-55621998 | None:intergenic | 40.0% | |
| TCATGGGATGAAGATTCTTG+TGG | - | chr1.4:55623469-55623488 | MS.gene94801:CDS | 40.0% | |
| TCATTGCCGAACATCTTCAA+AGG | + | chr1.4:55621199-55621218 | None:intergenic | 40.0% | |
| TCTAAGGAACAAGTCCTTAG+AGG | + | chr1.4:55623526-55623545 | None:intergenic | 40.0% | |
| TCTCAAAGCTTCAATGTTGG+TGG | - | chr1.4:55622234-55622253 | MS.gene94801:intron | 40.0% | |
| TGAACCCTCTTGAACAAAGA+AGG | + | chr1.4:55623863-55623882 | None:intergenic | 40.0% | |
| TGGTCACATGGGTAATACTT+AGG | - | chr1.4:55623101-55623120 | MS.gene94801:CDS | 40.0% | |
| TGTGTCGAGAAACTCTACTT+TGG | - | chr1.4:55621786-55621805 | MS.gene94801:CDS | 40.0% | |
| TGTTTCGGTGGCAATAGTTT+CGG | + | chr1.4:55622169-55622188 | None:intergenic | 40.0% | |
| TTCGGCAATGACAAATCTTC+TGG | - | chr1.4:55621208-55621227 | MS.gene94801:CDS | 40.0% | |
| ! | AATTCGGCTCTCCTTTTGAA+AGG | + | chr1.4:55620751-55620770 | None:intergenic | 40.0% |
| ! | ATGTGATTTGCATCATCCTG+TGG | + | chr1.4:55621163-55621182 | None:intergenic | 40.0% |
| ! | GTAAATTCATCTGGAGTCCT+TGG | - | chr1.4:55622201-55622220 | MS.gene94801:intron | 40.0% |
| ! | TGACCTCATTTTCCTTCTCT+TGG | + | chr1.4:55623734-55623753 | None:intergenic | 40.0% |
| ! | TTGGAAGTTGTTGGCTATGA+TGG | - | chr1.4:55623793-55623812 | MS.gene94801:CDS | 40.0% |
| !! | ATTCGGCTCTCCTTTTGAAA+GGG | + | chr1.4:55620750-55620769 | None:intergenic | 40.0% |
| !! | CTAGCCACTGATTCTATATG+TGG | + | chr1.4:55623442-55623461 | None:intergenic | 40.0% |
| !! | TACATTAGATGGACTGTGCT+TGG | + | chr1.4:55620702-55620721 | None:intergenic | 40.0% |
| !! | TGATAGAAACTTTGAGGCGA+TGG | + | chr1.4:55621403-55621422 | None:intergenic | 40.0% |
| !! | TTCGACCCACAATTGTTTTG+AGG | + | chr1.4:55621949-55621968 | None:intergenic | 40.0% |
| !! | TTCTACACAATCTTTAGGGC+GGG | - | chr1.4:55621657-55621676 | MS.gene94801:intron | 40.0% |
| !!! | CTTTGACTTTTTCACCACCT+TGG | + | chr1.4:55622043-55622062 | None:intergenic | 40.0% |
| !!! | GGCCGATCTTGTTTTTCATT+TGG | + | chr1.4:55623006-55623025 | None:intergenic | 40.0% |
| AAGCTATGTCACCAATGCCA+AGG | - | chr1.4:55621596-55621615 | MS.gene94801:intron | 45.0% | |
| ACAGTCTATGAACCTAGCCT+CGG | - | chr1.4:55621988-55622007 | MS.gene94801:intron | 45.0% | |
| ACATGGATGCAATCTCAGAG+AGG | - | chr1.4:55620941-55620960 | MS.gene94801:CDS | 45.0% | |
| ACCATCTTTCGTGCATTCCA+AGG | + | chr1.4:55623085-55623104 | None:intergenic | 45.0% | |
| ACTGAATGAGTCAAAGCCCT+TGG | - | chr1.4:55622969-55622988 | MS.gene94801:CDS | 45.0% | |
| AGAGGACATGATCACACTAG+AGG | - | chr1.4:55622308-55622327 | MS.gene94801:intron | 45.0% | |
| AGGCCAAGAGAAGGAAAATG+AGG | - | chr1.4:55623728-55623747 | MS.gene94801:CDS | 45.0% | |
| AGTCTCTAGTGAACCACAAG+AGG | - | chr1.4:55622290-55622309 | MS.gene94801:intron | 45.0% | |
| AGTGTGATCATGTCCTCTTG+TGG | + | chr1.4:55622306-55622325 | None:intergenic | 45.0% | |
| ATGCAATCCCAAGAATGCCT+TGG | + | chr1.4:55621616-55621635 | None:intergenic | 45.0% | |
| ATGCACGAAAGATGGTCACA+TGG | - | chr1.4:55623089-55623108 | MS.gene94801:CDS | 45.0% | |
| CATTCATTTGGGCCACAATG+TGG | + | chr1.4:55623897-55623916 | None:intergenic | 45.0% | |
| CATTCTTCGGTATTCTCCAG+TGG | - | chr1.4:55621526-55621545 | MS.gene94801:intron | 45.0% | |
| CTCTTAATGAGGCCAAGAGA+AGG | - | chr1.4:55623719-55623738 | MS.gene94801:CDS | 45.0% | |
| CTGTACTCAGCCTCTTAATG+AGG | - | chr1.4:55623708-55623727 | MS.gene94801:CDS | 45.0% | |
| CTTCTCTTGGCCTCATTAAG+AGG | + | chr1.4:55623721-55623740 | None:intergenic | 45.0% | |
| GAACAAAGAAGGACCTTCTG+TGG | + | chr1.4:55623852-55623871 | None:intergenic | 45.0% | |
| GCTGCACTATTGGAAGTTGT+TGG | - | chr1.4:55623784-55623803 | MS.gene94801:CDS | 45.0% | |
| GGGCTTGAAACCCTTTCAAA+AGG | - | chr1.4:55620737-55620756 | MS.gene94801:CDS | 45.0% | |
| GTATTCCCTTGAAAGCCCAT+TGG | - | chr1.4:55623651-55623670 | MS.gene94801:CDS | 45.0% | |
| TAGGGTGGCCATTGAAACAT+TGG | - | chr1.4:55620825-55620844 | MS.gene94801:CDS | 45.0% | |
| TCAAATTCCCTCTACTCCAC+AGG | - | chr1.4:55621144-55621163 | MS.gene94801:CDS | 45.0% | |
| TCACAAAGAACATGGCTCCA+AGG | - | chr1.4:55622023-55622042 | MS.gene94801:intron | 45.0% | |
| TCACCATTCCAACACACAGA+AGG | + | chr1.4:55622547-55622566 | None:intergenic | 45.0% | |
| TCATCATCCAAGCACAGAAC+AGG | - | chr1.4:55620895-55620914 | MS.gene94801:CDS | 45.0% | |
| TCATTTGTTCTCCCAGGACT+AGG | + | chr1.4:55621352-55621371 | None:intergenic | 45.0% | |
| TCCGGAATCTACTCGAATAG+TGG | - | chr1.4:55621318-55621337 | MS.gene94801:CDS | 45.0% | |
| TCCTTGGAATGCACGAAAGA+TGG | - | chr1.4:55623081-55623100 | MS.gene94801:CDS | 45.0% | |
| TGATGGAACTGATGTTTCGG+TGG | + | chr1.4:55622181-55622200 | None:intergenic | 45.0% | |
| TGCACGAAAGATGGTCACAT+GGG | - | chr1.4:55623090-55623109 | MS.gene94801:CDS | 45.0% | |
| TGGGATTGCATCCATGTATG+TGG | - | chr1.4:55621625-55621644 | MS.gene94801:intron | 45.0% | |
| TTCTCAGGCCTTCATGCATT+TGG | + | chr1.4:55621483-55621502 | None:intergenic | 45.0% | |
| ! | ACCAATGCCAAGGCATTCTT+GGG | - | chr1.4:55621606-55621625 | MS.gene94801:intron | 45.0% |
| ! | AGATGTTGATGAGGGGAAGA+TGG | - | chr1.4:55620976-55620995 | MS.gene94801:CDS | 45.0% |
| ! | ATTTGGAATCTCTGGCACCA+AGG | + | chr1.4:55622989-55623008 | None:intergenic | 45.0% |
| ! | GATGAAGTTTGTTTGGGGTG+GGG | - | chr1.4:55623933-55623952 | MS.gene94801:CDS | 45.0% |
| ! | GGATGAAGTTTGTTTGGGGT+GGG | - | chr1.4:55623932-55623951 | MS.gene94801:CDS | 45.0% |
| ! | TGGAGGGAAGATGTTGATGA+GGG | - | chr1.4:55620968-55620987 | MS.gene94801:CDS | 45.0% |
| ! | TGGTATTGAAGCCTAGTCCT+GGG | - | chr1.4:55621338-55621357 | MS.gene94801:CDS | 45.0% |
| ! | TTTGGAATCTCTGGCACCAA+GGG | + | chr1.4:55622988-55623007 | None:intergenic | 45.0% |
| !! | CTTTGAGGCGATGGATTTGT+TGG | + | chr1.4:55621394-55621413 | None:intergenic | 45.0% |
| AACGTGTTCTCCTGAGTCCT+CGG | - | chr1.4:55621681-55621700 | MS.gene94801:intron | 50.0% | |
| AAGCAGCTGTATGGGAGAAC+AGG | - | chr1.4:55621281-55621300 | MS.gene94801:CDS | 50.0% | |
| AATCTCAGAGAGGAAGGTGG+AGG | - | chr1.4:55620951-55620970 | MS.gene94801:CDS | 50.0% | |
| ACTGTTGAAGATGCAGGGTC+AGG | + | chr1.4:55621973-55621992 | None:intergenic | 50.0% | |
| AGGAAAGAGGTTGTGCAGAG+TGG | - | chr1.4:55623988-55624007 | MS.gene94801:CDS | 50.0% | |
| AGTGGCTAGGACCCTATCAT+GGG | - | chr1.4:55623453-55623472 | MS.gene94801:CDS | 50.0% | |
| ATCTCAGAGAGGAAGGTGGA+GGG | - | chr1.4:55620952-55620971 | MS.gene94801:CDS | 50.0% | |
| CAAAGAACATGGCTCCAAGG+TGG | - | chr1.4:55622026-55622045 | MS.gene94801:intron | 50.0% | |
| CCCATTGGACCCATCATTGA+GGG | - | chr1.4:55623666-55623685 | MS.gene94801:CDS | 50.0% | |
| CTCATCACTGGAATAGCCAC+TGG | + | chr1.4:55621545-55621564 | None:intergenic | 50.0% | |
| GCATCATCCTGTGGAGTAGA+GGG | + | chr1.4:55621154-55621173 | None:intergenic | 50.0% | |
| GGAAAGAGGTTGTGCAGAGT+GGG | - | chr1.4:55623989-55624008 | MS.gene94801:CDS | 50.0% | |
| GGATGCAATCTCAGAGAGGA+AGG | - | chr1.4:55620945-55620964 | MS.gene94801:CDS | 50.0% | |
| GTGGAGGGAAGATGTTGATG+AGG | - | chr1.4:55620967-55620986 | MS.gene94801:CDS | 50.0% | |
| TCCCAAGAATGCCTTGGCAT+TGG | + | chr1.4:55621610-55621629 | None:intergenic | 50.0% | |
| TGCAATCTCAGAGAGGAAGG+TGG | - | chr1.4:55620948-55620967 | MS.gene94801:CDS | 50.0% | |
| TGCATCATCCTGTGGAGTAG+AGG | + | chr1.4:55621155-55621174 | None:intergenic | 50.0% | |
| TGTGAGCATCATCAACACCG+AGG | + | chr1.4:55622008-55622027 | None:intergenic | 50.0% | |
| ! | ATGGGTCCAATGGGCTTTCA+AGG | + | chr1.4:55623660-55623679 | None:intergenic | 50.0% |
| ! | CACCAATGCCAAGGCATTCT+TGG | - | chr1.4:55621605-55621624 | MS.gene94801:intron | 50.0% |
| ! | GGAGGGAAGATGTTGATGAG+GGG | - | chr1.4:55620969-55620988 | MS.gene94801:CDS | 50.0% |
| ! | GGCTTTGACTCATTCAGTCC+AGG | + | chr1.4:55622967-55622986 | None:intergenic | 50.0% |
| ! | GGGATGAAGTTTGTTTGGGG+TGG | - | chr1.4:55623931-55623950 | MS.gene94801:CDS | 50.0% |
| ! | GTGGTATTGAAGCCTAGTCC+TGG | - | chr1.4:55621337-55621356 | MS.gene94801:CDS | 50.0% |
| ! | TGGGTCCAATGGGCTTTCAA+GGG | + | chr1.4:55623659-55623678 | None:intergenic | 50.0% |
| !! | CCCTCAATGATGGGTCCAAT+GGG | + | chr1.4:55623669-55623688 | None:intergenic | 50.0% |
| !! | GCTTTGGGGAGGGAAATAGA+AGG | - | chr1.4:55624042-55624061 | MS.gene94801:CDS | 50.0% |
| !! | GGAGATTGATGCTTTGGGGA+GGG | - | chr1.4:55624032-55624051 | MS.gene94801:CDS | 50.0% |
| !! | TCCCTCAATGATGGGTCCAA+TGG | + | chr1.4:55623670-55623689 | None:intergenic | 50.0% |
| !! | TGGAGATTGATGCTTTGGGG+AGG | - | chr1.4:55624031-55624050 | MS.gene94801:CDS | 50.0% |
| AGAGGTTGTGCAGAGTGGGT+TGG | - | chr1.4:55623993-55624012 | MS.gene94801:CDS | 55.0% | |
| CAGTGGCTAGGACCCTATCA+TGG | - | chr1.4:55623452-55623471 | MS.gene94801:CDS | 55.0% | |
| CTTTGCCTCTATGCACACCG+AGG | + | chr1.4:55621701-55621720 | None:intergenic | 55.0% | |
| GCATCATCAACACCGAGGCT+AGG | + | chr1.4:55622003-55622022 | None:intergenic | 55.0% | |
| GCCCATTGGACCCATCATTG+AGG | - | chr1.4:55623665-55623684 | MS.gene94801:CDS | 55.0% | |
| TCTATGCACACCGAGGACTC+AGG | + | chr1.4:55621694-55621713 | None:intergenic | 55.0% | |
| ! | TGAGTCCTCGGTGTGCATAG+AGG | - | chr1.4:55621693-55621712 | MS.gene94801:CDS | 55.0% |
| !! | TGTGCAGAGTGGGTTGGTTG+AGG | - | chr1.4:55623999-55624018 | MS.gene94801:CDS | 55.0% |
| TGTGCAGTGGGACCCACAGA+AGG | - | chr1.4:55623836-55623855 | MS.gene94801:CDS | 60.0% | |
| GGGTGGGGACAGTCACAGCC+TGG | - | chr1.4:55623948-55623967 | MS.gene94801:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 55620680 | 55624119 | 55620680 | ID=MS.gene94801 |
| chr1.4 | mRNA | 55620680 | 55624119 | 55620680 | ID=MS.gene94801.t1;Parent=MS.gene94801 |
| chr1.4 | exon | 55622470 | 55624119 | 55622470 | ID=MS.gene94801.t1.exon1;Parent=MS.gene94801.t1 |
| chr1.4 | CDS | 55622470 | 55624119 | 55622470 | ID=cds.MS.gene94801.t1;Parent=MS.gene94801.t1 |
| chr1.4 | exon | 55621688 | 55621835 | 55621688 | ID=MS.gene94801.t1.exon2;Parent=MS.gene94801.t1 |
| chr1.4 | CDS | 55621688 | 55621835 | 55621688 | ID=cds.MS.gene94801.t1;Parent=MS.gene94801.t1 |
| chr1.4 | exon | 55620680 | 55621401 | 55620680 | ID=MS.gene94801.t1.exon3;Parent=MS.gene94801.t1 |
| chr1.4 | CDS | 55620680 | 55621401 | 55620680 | ID=cds.MS.gene94801.t1;Parent=MS.gene94801.t1 |
| Gene Sequence |
| Protein sequence |
