Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94932.t1 | XP_013460015.1 | 95.2 | 251 | 12 | 0 | 1 | 251 | 100 | 350 | 3.50E-115 | 424.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94932.t1 | Q94EG9 | 57.5 | 259 | 76 | 4 | 1 | 251 | 94 | 326 | 2.2e-62 | 240.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94932.t1 | Q6VM15 | 95.2 | 251 | 12 | 0 | 1 | 251 | 100 | 350 | 2.5e-115 | 424.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050397 | MS.gene94932 | 0.804315 | 2.29E-49 | -1.69E-46 |
| MS.gene050670 | MS.gene94932 | 0.800044 | 1.73E-48 | -1.69E-46 |
| MS.gene053873 | MS.gene94932 | 0.812141 | 4.92E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94932.t1 | MTR_3g058630 | 97.211 | 251 | 7 | 0 | 1 | 251 | 100 | 350 | 6.67e-180 | 498 |
| MS.gene94932.t1 | MTR_2g097580 | 55.600 | 250 | 101 | 2 | 1 | 250 | 97 | 336 | 6.10e-100 | 295 |
| MS.gene94932.t1 | MTR_4g083570 | 23.077 | 260 | 181 | 8 | 1 | 249 | 98 | 349 | 4.02e-12 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene94932.t1 | AT1G55910 | 58.301 | 259 | 74 | 4 | 1 | 251 | 94 | 326 | 3.63e-99 | 292 |
| MS.gene94932.t1 | AT5G59520 | 51.383 | 253 | 112 | 4 | 1 | 250 | 109 | 353 | 1.84e-76 | 235 |
Find 52 sgRNAs with CRISPR-Local
Find 120 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGTGTTATTTCTTCTCTTT+TGG | 0.222822 | 3.1:-44242029 | MS.gene94932:CDS |
| CAGACGCATGGAAAGCTTTA+TGG | 0.223228 | 3.1:-44240269 | MS.gene94932:CDS |
| TTATAGCTGTTGTTATGATA+TGG | 0.275907 | 3.1:-44239915 | MS.gene94932:CDS |
| AGATGCAAGATCAGTGTTAT+TGG | 0.320171 | 3.1:+44240401 | None:intergenic |
| CTTGCAGTGTCGTTGGGAAT+AGG | 0.356247 | 3.1:-44239940 | MS.gene94932:CDS |
| TACTTCTCAGTCACAATATC+AGG | 0.367077 | 3.1:-44240543 | MS.gene94932:intron |
| AGTGATGCTAATGAAACTTT+TGG | 0.367161 | 3.1:-44242127 | MS.gene94932:CDS |
| ATTCCAATGGCCACACCAAT+TGG | 0.398109 | 3.1:+44240126 | None:intergenic |
| TATAGCTGTTGTTATGATAT+GGG | 0.411672 | 3.1:-44239914 | MS.gene94932:CDS |
| CTGTGTTAACAGAGTTCTGC+TGG | 0.430584 | 3.1:-44240426 | MS.gene94932:intron |
| CAAGCCAACATGAACGCAAA+AGG | 0.431464 | 3.1:+44242082 | None:intergenic |
| AAGTTTCTTGCAGTGTCGTT+GGG | 0.445877 | 3.1:-44239946 | MS.gene94932:CDS |
| CATGATAGTAGAGGTCGATT+AGG | 0.451979 | 3.1:+44240183 | None:intergenic |
| GCGTTCATGTTGGCTTGTGC+TGG | 0.456845 | 3.1:-44242076 | MS.gene94932:CDS |
| TTCGCAATCTCTAGTCCAAT+TGG | 0.460160 | 3.1:-44240141 | MS.gene94932:CDS |
| CACAGGGTCATGTGGCCGAT+TGG | 0.483842 | 3.1:-44240086 | MS.gene94932:CDS |
| GAAGTTTCTTGCAGTGTCGT+TGG | 0.484647 | 3.1:-44239947 | MS.gene94932:CDS |
| AGTCCAATTGGTGTGGCCAT+TGG | 0.487047 | 3.1:-44240129 | MS.gene94932:CDS |
| CTTGCATCTAGTAGCTCAAT+CGG | 0.488837 | 3.1:-44240387 | MS.gene94932:CDS |
| CCATGGGCATTGCACTCCTT+AGG | 0.490112 | 3.1:-44240212 | MS.gene94932:CDS |
| GAAAACAGAATGAGCACAAA+GGG | 0.517694 | 3.1:+44240326 | None:intergenic |
| GGTGGTGGTGCTGACGTTGA+AGG | 0.531770 | 3.1:-44241992 | MS.gene94932:CDS |
| TCAGCACCACCACCATGATT+AGG | 0.533631 | 3.1:+44242001 | None:intergenic |
| GGGCATTGCACTCCTTAGGA+TGG | 0.534848 | 3.1:-44240208 | MS.gene94932:CDS |
| CAAACATTCAAAGGCCGACT+CGG | 0.545714 | 3.1:-44239977 | MS.gene94932:CDS |
| TTGCAGGGGCAGACAAAGGA+AGG | 0.562265 | 3.1:-44240577 | MS.gene94932:intron |
| AAGCCAACATGAACGCAAAA+GGG | 0.565393 | 3.1:+44242083 | None:intergenic |
| AATATTCGCAGCCATTGCCA+TGG | 0.570364 | 3.1:-44240229 | MS.gene94932:CDS |
| TGTATTAGATTCCACAACAC+AGG | 0.578420 | 3.1:-44240103 | MS.gene94932:CDS |
| ATATCTATGGGTCTAGCTTG+TGG | 0.583623 | 3.1:-44240054 | MS.gene94932:CDS |
| AGATATAGCGAAAATCCAAT+CGG | 0.583976 | 3.1:+44240071 | None:intergenic |
| GTCGATTAGGAACCATCCTA+AGG | 0.588650 | 3.1:+44240196 | None:intergenic |
| CGAAAACAGAATGAGCACAA+AGG | 0.590220 | 3.1:+44240325 | None:intergenic |
| TCGGCCTTTGAATGTTTGTG+AGG | 0.596171 | 3.1:+44239982 | None:intergenic |
| GCAATTGCAGGGGCAGACAA+AGG | 0.597592 | 3.1:-44240581 | MS.gene94932:intron |
| TGTGCCTCACAAACATTCAA+AGG | 0.597773 | 3.1:-44239986 | MS.gene94932:CDS |
| GGAATCTAATACAATTCCAA+TGG | 0.601962 | 3.1:+44240113 | None:intergenic |
| GGCCACATGACCCTGTGTTG+TGG | 0.602728 | 3.1:+44240092 | None:intergenic |
| CCGTGACAAAAGCAGACGCA+TGG | 0.606169 | 3.1:-44240281 | MS.gene94932:CDS |
| GCAGACAAAGGAAGGAGCAA+TGG | 0.607515 | 3.1:-44240569 | MS.gene94932:CDS |
| GAGTGCAATGCCCATGGCAA+TGG | 0.610902 | 3.1:+44240218 | None:intergenic |
| CCTAAGGAGTGCAATGCCCA+TGG | 0.611490 | 3.1:+44240212 | None:intergenic |
| ATATTCGCAGCCATTGCCAT+GGG | 0.618731 | 3.1:-44240228 | MS.gene94932:CDS |
| AAACTTCATATAAGCCGAGT+CGG | 0.619401 | 3.1:+44239963 | None:intergenic |
| GGTGCTGACGTTGAAGGTCA+AGG | 0.628981 | 3.1:-44241986 | MS.gene94932:intron |
| GAGAAGCCTAATCATGGTGG+TGG | 0.630423 | 3.1:-44242007 | MS.gene94932:CDS |
| TTCCACAACACAGGGTCATG+TGG | 0.634030 | 3.1:-44240094 | MS.gene94932:CDS |
| GATTGCGAATGCAAAAGCGT+AGG | 0.649494 | 3.1:+44240155 | None:intergenic |
| AATCTCTAGTCCAATTGGTG+TGG | 0.654473 | 3.1:-44240136 | MS.gene94932:CDS |
| GTATTAGATTCCACAACACA+GGG | 0.667227 | 3.1:-44240102 | MS.gene94932:CDS |
| TTGGAGAAGCCTAATCATGG+TGG | 0.697490 | 3.1:-44242010 | MS.gene94932:CDS |
| TAGGCTGCGCATGATAGTAG+AGG | 0.702067 | 3.1:+44240174 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAATAAATAAATATAAA+AGG | - | chr3.1:44240554-44240573 | MS.gene94932:CDS | 0.0% |
| !! | ATTTATATAATTTATAAATT+AGG | - | chr3.1:44240780-44240799 | MS.gene94932:intron | 0.0% |
| !! | TATTTCATTATGATTATTTA+TGG | - | chr3.1:44240884-44240903 | MS.gene94932:intron | 10.0% |
| !!! | TTATTTTCTCAAATTATTAT+CGG | - | chr3.1:44240291-44240310 | MS.gene94932:CDS | 10.0% |
| !! | TTGTAATAATGATGAAAATA+TGG | + | chr3.1:44241359-44241378 | None:intergenic | 15.0% |
| !!! | TAATATTATGTTTTTGACTT+TGG | - | chr3.1:44240115-44240134 | MS.gene94932:CDS | 15.0% |
| !! | AAGAAATATTTATTAATCGC+TGG | - | chr3.1:44240855-44240874 | MS.gene94932:intron | 20.0% |
| !! | ATGTCTTAATTATGAATATG+TGG | - | chr3.1:44241181-44241200 | MS.gene94932:intron | 20.0% |
| !!! | TAAACACTTTTGAGATTATT+TGG | + | chr3.1:44240516-44240535 | None:intergenic | 20.0% |
| !!! | TACAATAGTCTTAACTATAA+AGG | - | chr3.1:44240817-44240836 | MS.gene94932:intron | 20.0% |
| !!! | TTTTTCTTGACTTATGTTAT+AGG | - | chr3.1:44240642-44240661 | MS.gene94932:intron | 20.0% |
| ! | ACTTTATCCCTATAACAAAA+AGG | + | chr3.1:44240581-44240600 | None:intergenic | 25.0% |
| ! | GATTATAATCATATGTGTTG+CGG | + | chr3.1:44240258-44240277 | None:intergenic | 25.0% |
| ! | TATAGCTGTTGTTATGATAT+GGG | - | chr3.1:44242131-44242150 | MS.gene94932:CDS | 25.0% |
| ! | TTATAGCTGTTGTTATGATA+TGG | - | chr3.1:44242130-44242149 | MS.gene94932:CDS | 25.0% |
| ! | TTTCTGTTATAAATTCGATC+TGG | + | chr3.1:44241320-44241339 | None:intergenic | 25.0% |
| !! | AATAAACCATCTTTTTGCTA+AGG | - | chr3.1:44242032-44242051 | MS.gene94932:CDS | 25.0% |
| !! | ATAAACCATCTTTTTGCTAA+GGG | - | chr3.1:44242033-44242052 | MS.gene94932:CDS | 25.0% |
| !! | ATAGTCTTAACTATAAAGGT+TGG | - | chr3.1:44240821-44240840 | MS.gene94932:intron | 25.0% |
| !! | GGATAATATGGTTACAATTT+TGG | - | chr3.1:44240737-44240756 | MS.gene94932:intron | 25.0% |
| !! | TAATATGGTTACAATTTTGG+TGG | - | chr3.1:44240740-44240759 | MS.gene94932:intron | 25.0% |
| !! | TGTTATTTGTAGGGATAATA+TGG | - | chr3.1:44240725-44240744 | MS.gene94932:intron | 25.0% |
| !!! | AAAAGGTCCTTTTTGTTATA+GGG | - | chr3.1:44240571-44240590 | MS.gene94932:CDS | 25.0% |
| !!! | ACACAGTTACTTTCTTTTAT+TGG | - | chr3.1:44241440-44241459 | MS.gene94932:intron | 25.0% |
| !!! | TAAAAGGTCCTTTTTGTTAT+AGG | - | chr3.1:44240570-44240589 | MS.gene94932:CDS | 25.0% |
| !!! | TGATTTTAGTATACACCTTT+AGG | - | chr3.1:44240157-44240176 | MS.gene94932:CDS | 25.0% |
| !!! | TTACTGTGTTGTTATTTGTA+GGG | - | chr3.1:44240716-44240735 | MS.gene94932:intron | 25.0% |
| !!! | TTGTGTTATTTCTTCTCTTT+TGG | - | chr3.1:44240016-44240035 | MS.gene94932:CDS | 25.0% |
| !!! | TTTACTGTGTTGTTATTTGT+AGG | - | chr3.1:44240715-44240734 | MS.gene94932:intron | 25.0% |
| AGATATAGCGAAAATCCAAT+CGG | + | chr3.1:44241977-44241996 | None:intergenic | 30.0% | |
| GGAATCTAATACAATTCCAA+TGG | + | chr3.1:44241935-44241954 | None:intergenic | 30.0% | |
| ! | AGTGATGCTAATGAAACTTT+TGG | - | chr3.1:44239918-44239937 | MS.gene94932:CDS | 30.0% |
| ! | TGGATTTTCGCTATATCTAT+GGG | - | chr3.1:44241979-44241998 | MS.gene94932:intron | 30.0% |
| ! | TTGGATTTTCGCTATATCTA+TGG | - | chr3.1:44241978-44241997 | MS.gene94932:intron | 30.0% |
| !!! | TTTTTGACTTTGGTCTTGTT+TGG | - | chr3.1:44240125-44240144 | MS.gene94932:CDS | 30.0% |
| AAACTTCATATAAGCCGAGT+CGG | + | chr3.1:44242085-44242104 | None:intergenic | 35.0% | |
| AATATTCGCATCTCGATAGT+TGG | - | chr3.1:44241053-44241072 | MS.gene94932:intron | 35.0% | |
| AATTATGAATATGTGGCTGC+AGG | - | chr3.1:44241188-44241207 | MS.gene94932:intron | 35.0% | |
| AGATGCAAGATCAGTGTTAT+TGG | + | chr3.1:44241647-44241666 | None:intergenic | 35.0% | |
| ATTATATCCTTCCAACTGCA+AGG | + | chr3.1:44241036-44241055 | None:intergenic | 35.0% | |
| CAATTCTGATATTTGCAGTC+TGG | - | chr3.1:44241216-44241235 | MS.gene94932:intron | 35.0% | |
| CATAACCCTTAGCAAAAAGA+TGG | + | chr3.1:44242041-44242060 | None:intergenic | 35.0% | |
| CATAAGCGCTTATATCCTAA+AGG | + | chr3.1:44240175-44240194 | None:intergenic | 35.0% | |
| CATAATATGTATCCAACACC+AGG | + | chr3.1:44240228-44240247 | None:intergenic | 35.0% | |
| GAAAACAGAATGAGCACAAA+GGG | + | chr3.1:44241722-44241741 | None:intergenic | 35.0% | |
| GAAAGTAACTGTGTTAGACA+AGG | + | chr3.1:44241434-44241453 | None:intergenic | 35.0% | |
| GCTGATAGATGAAGATCATA+TGG | + | chr3.1:44241146-44241165 | None:intergenic | 35.0% | |
| GTATTAGATTCCACAACACA+GGG | - | chr3.1:44241943-44241962 | MS.gene94932:intron | 35.0% | |
| GTTAGACAAGGTGAATCTTA+AGG | + | chr3.1:44241422-44241441 | None:intergenic | 35.0% | |
| TACTTCTCAGTCACAATATC+AGG | - | chr3.1:44241502-44241521 | MS.gene94932:intron | 35.0% | |
| TCAACCAAACAAAGGATAAG+TGG | - | chr3.1:44240950-44240969 | MS.gene94932:intron | 35.0% | |
| TCAACCACTTATCCTTTGTT+TGG | + | chr3.1:44240957-44240976 | None:intergenic | 35.0% | |
| TGTATTAGATTCCACAACAC+AGG | - | chr3.1:44241942-44241961 | MS.gene94932:intron | 35.0% | |
| TGTGCTGTACAAGATATTTG+TGG | - | chr3.1:44241001-44241020 | MS.gene94932:intron | 35.0% | |
| TTCACGTTTCAACCAAACAA+AGG | - | chr3.1:44240942-44240961 | MS.gene94932:intron | 35.0% | |
| ! | CTTTTATTGGTGCAATTGCA+GGG | - | chr3.1:44241453-44241472 | MS.gene94932:intron | 35.0% |
| ! | TCTTTTATTGGTGCAATTGC+AGG | - | chr3.1:44241452-44241471 | MS.gene94932:intron | 35.0% |
| ! | TTTTATTGGTGCAATTGCAG+GGG | - | chr3.1:44241454-44241473 | MS.gene94932:intron | 35.0% |
| AAGCCAACATGAACGCAAAA+GGG | + | chr3.1:44239965-44239984 | None:intergenic | 40.0% | |
| AATCATATGTGTTGCGGTGT+GGG | + | chr3.1:44240252-44240271 | None:intergenic | 40.0% | |
| AATCTCTAGTCCAATTGGTG+TGG | - | chr3.1:44241909-44241928 | MS.gene94932:intron | 40.0% | |
| ATAGTGACTTCTGAGCTAGA+GGG | - | chr3.1:44240911-44240930 | MS.gene94932:intron | 40.0% | |
| ATATGTATCCAACACCAGGA+CGG | + | chr3.1:44240224-44240243 | None:intergenic | 40.0% | |
| CATGATAGTAGAGGTCGATT+AGG | + | chr3.1:44241865-44241884 | None:intergenic | 40.0% | |
| CGAAAACAGAATGAGCACAA+AGG | + | chr3.1:44241723-44241742 | None:intergenic | 40.0% | |
| CTTGCATCTAGTAGCTCAAT+CGG | - | chr3.1:44241658-44241677 | MS.gene94932:intron | 40.0% | |
| GGAATTAGATTCCTTGCAGT+TGG | - | chr3.1:44241022-44241041 | MS.gene94932:intron | 40.0% | |
| TAATCATATGTGTTGCGGTG+TGG | + | chr3.1:44240253-44240272 | None:intergenic | 40.0% | |
| TATAGTGACTTCTGAGCTAG+AGG | - | chr3.1:44240910-44240929 | MS.gene94932:intron | 40.0% | |
| TGTGCCTCACAAACATTCAA+AGG | - | chr3.1:44242059-44242078 | MS.gene94932:CDS | 40.0% | |
| TTAGATTCCTTGCAGTTGGA+AGG | - | chr3.1:44241026-44241045 | MS.gene94932:intron | 40.0% | |
| TTCGCAATCTCTAGTCCAAT+TGG | - | chr3.1:44241904-44241923 | MS.gene94932:intron | 40.0% | |
| TTCTGAGCTAGAGGGATAAA+TGG | - | chr3.1:44240919-44240938 | MS.gene94932:intron | 40.0% | |
| ! | AAGTTTCTTGCAGTGTCGTT+GGG | - | chr3.1:44242099-44242118 | MS.gene94932:CDS | 40.0% |
| ! | ATATCTATGGGTCTAGCTTG+TGG | - | chr3.1:44241991-44242010 | MS.gene94932:CDS | 40.0% |
| ! | TGTGCTCATTCTGTTTTCGA+GGG | - | chr3.1:44241724-44241743 | MS.gene94932:intron | 40.0% |
| ! | TTGTGCTCATTCTGTTTTCG+AGG | - | chr3.1:44241723-44241742 | MS.gene94932:intron | 40.0% |
| !! | CTTTTGGAGAAGCCTAATCA+TGG | - | chr3.1:44240032-44240051 | MS.gene94932:CDS | 40.0% |
| !! | GTTTTCGAGGGTTTAGCAAT+TGG | - | chr3.1:44241736-44241755 | MS.gene94932:intron | 40.0% |
| !!! | TGGTTACAATTTTGGTGGTG+TGG | - | chr3.1:44240745-44240764 | MS.gene94932:intron | 40.0% |
| AATATTCGCAGCCATTGCCA+TGG | - | chr3.1:44241816-44241835 | MS.gene94932:intron | 45.0% | |
| ATAGACACAGAACACGACAC+AGG | + | chr3.1:44240327-44240346 | None:intergenic | 45.0% | |
| ATATTCGCAGCCATTGCCAT+GGG | - | chr3.1:44241817-44241836 | MS.gene94932:intron | 45.0% | |
| ATTCCAATGGCCACACCAAT+TGG | + | chr3.1:44241922-44241941 | None:intergenic | 45.0% | |
| CAAACATTCAAAGGCCGACT+CGG | - | chr3.1:44242068-44242087 | MS.gene94932:CDS | 45.0% | |
| CAAGCCAACATGAACGCAAA+AGG | + | chr3.1:44239966-44239985 | None:intergenic | 45.0% | |
| CAGACGCATGGAAAGCTTTA+TGG | - | chr3.1:44241776-44241795 | MS.gene94932:intron | 45.0% | |
| CATGAACATGACAACGACTG+TGG | + | chr3.1:44241286-44241305 | None:intergenic | 45.0% | |
| CTGTGTTAACAGAGTTCTGC+TGG | - | chr3.1:44241619-44241638 | MS.gene94932:intron | 45.0% | |
| GAAGTTTCTTGCAGTGTCGT+TGG | - | chr3.1:44242098-44242117 | MS.gene94932:CDS | 45.0% | |
| GTCGATTAGGAACCATCCTA+AGG | + | chr3.1:44241852-44241871 | None:intergenic | 45.0% | |
| TATGTATCCAACACCAGGAC+GGG | + | chr3.1:44240223-44240242 | None:intergenic | 45.0% | |
| TCGGCCTTTGAATGTTTGTG+AGG | + | chr3.1:44242066-44242085 | None:intergenic | 45.0% | |
| TTGGAGAAGCCTAATCATGG+TGG | - | chr3.1:44240035-44240054 | MS.gene94932:CDS | 45.0% | |
| ! | GATTGCGAATGCAAAAGCGT+AGG | + | chr3.1:44241893-44241912 | None:intergenic | 45.0% |
| ! | GTACCCTTTTGCGTTCATGT+TGG | - | chr3.1:44239959-44239978 | MS.gene94932:CDS | 45.0% |
| ! | TGGTGGTGTGGTACTTGATT+CGG | - | chr3.1:44240757-44240776 | MS.gene94932:intron | 45.0% |
| AGTCCAATTGGTGTGGCCAT+TGG | - | chr3.1:44241916-44241935 | MS.gene94932:intron | 50.0% | |
| ATGTATCCAACACCAGGACG+GGG | + | chr3.1:44240222-44240241 | None:intergenic | 50.0% | |
| GAGAAGCCTAATCATGGTGG+TGG | - | chr3.1:44240038-44240057 | MS.gene94932:CDS | 50.0% | |
| GCAGACAAAGGAAGGAGCAA+TGG | - | chr3.1:44241476-44241495 | MS.gene94932:intron | 50.0% | |
| TAGGCTGCGCATGATAGTAG+AGG | + | chr3.1:44241874-44241893 | None:intergenic | 50.0% | |
| TCAGCACCACCACCATGATT+AGG | + | chr3.1:44240047-44240066 | None:intergenic | 50.0% | |
| TTCCACAACACAGGGTCATG+TGG | - | chr3.1:44241951-44241970 | MS.gene94932:intron | 50.0% | |
| ! | CTTGCAGTGTCGTTGGGAAT+AGG | - | chr3.1:44242105-44242124 | MS.gene94932:CDS | 50.0% |
| !! | CCATGCGTCTGCTTTTGTCA+CGG | + | chr3.1:44241767-44241786 | None:intergenic | 50.0% |
| CCGTGACAAAAGCAGACGCA+TGG | - | chr3.1:44241764-44241783 | MS.gene94932:intron | 55.0% | |
| GAGTGCAATGCCCATGGCAA+TGG | + | chr3.1:44241830-44241849 | None:intergenic | 55.0% | |
| GCAATTGCAGGGGCAGACAA+AGG | - | chr3.1:44241464-44241483 | MS.gene94932:intron | 55.0% | |
| TTGCAGGGGCAGACAAAGGA+AGG | - | chr3.1:44241468-44241487 | MS.gene94932:intron | 55.0% | |
| ! | CCATGGGCATTGCACTCCTT+AGG | - | chr3.1:44241833-44241852 | MS.gene94932:intron | 55.0% |
| ! | CCTAAGGAGTGCAATGCCCA+TGG | + | chr3.1:44241836-44241855 | None:intergenic | 55.0% |
| ! | GGGCATTGCACTCCTTAGGA+TGG | - | chr3.1:44241837-44241856 | MS.gene94932:intron | 55.0% |
| !! | GCGTTCATGTTGGCTTGTGC+TGG | - | chr3.1:44239969-44239988 | MS.gene94932:CDS | 55.0% |
| !! | GGTGCTGACGTTGAAGGTCA+AGG | - | chr3.1:44240059-44240078 | MS.gene94932:CDS | 55.0% |
| AGCAGAGATACTCCCCGTCC+TGG | - | chr3.1:44240207-44240226 | MS.gene94932:CDS | 60.0% | |
| CACAGGGTCATGTGGCCGAT+TGG | - | chr3.1:44241959-44241978 | MS.gene94932:intron | 60.0% | |
| GATACTCCCCGTCCTGGTGT+TGG | - | chr3.1:44240213-44240232 | MS.gene94932:CDS | 60.0% | |
| GGCCACATGACCCTGTGTTG+TGG | + | chr3.1:44241956-44241975 | None:intergenic | 60.0% | |
| !! | GGTGGTGGTGCTGACGTTGA+AGG | - | chr3.1:44240053-44240072 | MS.gene94932:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.1 | gene | 44239906 | 44242161 | 44239906 | ID=MS.gene94932 |
| chr3.1 | mRNA | 44239906 | 44242161 | 44239906 | ID=MS.gene94932.t1;Parent=MS.gene94932 |
| chr3.1 | exon | 44241987 | 44242161 | 44241987 | ID=MS.gene94932.t1.exon1;Parent=MS.gene94932.t1 |
| chr3.1 | CDS | 44241987 | 44242161 | 44241987 | ID=cds.MS.gene94932.t1;Parent=MS.gene94932.t1 |
| chr3.1 | exon | 44240544 | 44240593 | 44240544 | ID=MS.gene94932.t1.exon2;Parent=MS.gene94932.t1 |
| chr3.1 | CDS | 44240544 | 44240593 | 44240544 | ID=cds.MS.gene94932.t1;Parent=MS.gene94932.t1 |
| chr3.1 | exon | 44239906 | 44240436 | 44239906 | ID=MS.gene94932.t1.exon3;Parent=MS.gene94932.t1 |
| chr3.1 | CDS | 44239906 | 44240436 | 44239906 | ID=cds.MS.gene94932.t1;Parent=MS.gene94932.t1 |
| Gene Sequence |
| Protein sequence |
