Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95092.t1 | XP_013458668.1 | 92.3 | 221 | 13 | 2 | 1 | 219 | 8 | 226 | 1.00E-105 | 392.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95092.t1 | Q9SW11 | 30.8 | 120 | 82 | 1 | 104 | 222 | 32 | 151 | 1.7e-08 | 61.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95092.t1 | G7ZZT9 | 92.3 | 221 | 13 | 2 | 1 | 219 | 8 | 226 | 7.3e-106 | 392.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053963 | MS.gene95092 | 0.802125 | 6.51E-49 | -1.69E-46 |
| MS.gene054022 | MS.gene95092 | 0.807107 | 5.94E-50 | -1.69E-46 |
| MS.gene058592 | MS.gene95092 | 0.807643 | 4.57E-50 | -1.69E-46 |
| MS.gene05952 | MS.gene95092 | 0.800433 | 1.44E-48 | -1.69E-46 |
| MS.gene060412 | MS.gene95092 | 0.828576 | 8.33E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95092.t1 | MTR_4g134140 | 92.308 | 221 | 13 | 2 | 1 | 219 | 8 | 226 | 1.80e-138 | 390 |
| MS.gene95092.t1 | MTR_4g134130 | 49.265 | 136 | 61 | 4 | 89 | 218 | 47 | 180 | 4.09e-32 | 117 |
| MS.gene95092.t1 | MTR_4g105090 | 42.424 | 132 | 70 | 3 | 79 | 210 | 103 | 228 | 8.50e-27 | 104 |
| MS.gene95092.t1 | MTR_2g096850 | 33.071 | 127 | 81 | 2 | 92 | 218 | 31 | 153 | 1.74e-15 | 75.5 |
| MS.gene95092.t1 | MTR_4g125930 | 34.559 | 136 | 81 | 5 | 94 | 224 | 7 | 139 | 1.90e-14 | 72.4 |
| MS.gene95092.t1 | MTR_3g008270 | 30.657 | 137 | 92 | 2 | 85 | 220 | 9 | 143 | 4.29e-12 | 65.5 |
| MS.gene95092.t1 | MTR_7g014950 | 31.452 | 124 | 83 | 2 | 99 | 221 | 23 | 145 | 1.11e-11 | 60.8 |
| MS.gene95092.t1 | MTR_3g008280 | 29.167 | 120 | 84 | 1 | 94 | 212 | 24 | 143 | 2.92e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95092.t1 | AT5G47740 | 47.403 | 154 | 72 | 3 | 63 | 215 | 21 | 166 | 1.68e-37 | 131 |
| MS.gene95092.t1 | AT5G47740 | 46.795 | 156 | 72 | 4 | 63 | 215 | 21 | 168 | 1.44e-35 | 126 |
| MS.gene95092.t1 | AT4G25160 | 31.538 | 130 | 88 | 1 | 94 | 222 | 22 | 151 | 1.85e-15 | 75.5 |
| MS.gene95092.t1 | AT2G45910 | 27.820 | 133 | 92 | 2 | 88 | 220 | 43 | 171 | 4.89e-12 | 65.1 |
| MS.gene95092.t1 | AT2G45910 | 27.820 | 133 | 92 | 2 | 88 | 220 | 43 | 171 | 4.89e-12 | 65.1 |
| MS.gene95092.t1 | AT5G57035 | 31.148 | 122 | 80 | 3 | 100 | 220 | 34 | 152 | 1.62e-11 | 63.5 |
| MS.gene95092.t1 | AT2G19410 | 32.500 | 120 | 76 | 3 | 100 | 215 | 37 | 155 | 2.38e-11 | 63.2 |
Find 45 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CAAGTGTTTGATTACAATTT+CGG | 0.312597 | 8.2:-692041 | MS.gene95092:CDS |
| GTGATCGACCAGATGATTAA+TGG | 0.319312 | 8.2:-689456 | None:intergenic |
| GTTACCTTAGATTATTAGAT+TGG | 0.320558 | 8.2:+689671 | None:intergenic |
| CTACCCAATCTAATAATCTA+AGG | 0.338317 | 8.2:-689675 | MS.gene95092:intron |
| GAATCTAAATATAAGGAAAT+TGG | 0.342523 | 8.2:-689707 | MS.gene95092:CDS |
| TTTGAAGAAGGAAAGTAGAT+TGG | 0.355768 | 8.2:-691973 | MS.gene95092:CDS |
| TTGTAGGGAATCTAAATATA+AGG | 0.359391 | 8.2:-689714 | MS.gene95092:CDS |
| CAAGCATGGAAGCACTTTCA+TGG | 0.384069 | 8.2:-691833 | MS.gene95092:CDS |
| AATAAAACCACAACCACAAC+TGG | 0.394819 | 8.2:+692079 | None:intergenic |
| TCTTGAATATCATGCTTAGT+TGG | 0.411358 | 8.2:+692137 | None:intergenic |
| AAGTGGACCCATTAATCATC+TGG | 0.419370 | 8.2:+689448 | None:intergenic |
| TTGGAATTAGCTTGACTTGA+GGG | 0.423894 | 8.2:+691754 | None:intergenic |
| AGAGAAACAGTAGTTGTAGA+AGG | 0.431084 | 8.2:+691789 | None:intergenic |
| GAAATCTCCAGTTGTGGTTG+TGG | 0.445667 | 8.2:-692086 | MS.gene95092:CDS |
| AATATAAGGAAATTGGTGAT+TGG | 0.458551 | 8.2:-689700 | MS.gene95092:CDS |
| GTTTGAGATAAATTTGAAGA+AGG | 0.464932 | 8.2:-691985 | MS.gene95092:CDS |
| GAAGCCATTGTGGACCTTGT+AGG | 0.467590 | 8.2:-689730 | MS.gene95092:CDS |
| AGGTGTCACGGCATGTTTCA+AGG | 0.477649 | 8.2:+691809 | None:intergenic |
| TTACCTTAGATTATTAGATT+GGG | 0.480669 | 8.2:+689672 | None:intergenic |
| GGTAGAAACGATGCTTATTG+AGG | 0.487398 | 8.2:-689767 | MS.gene95092:CDS |
| TGAGAGTACTTACATGGAGT+TGG | 0.499850 | 8.2:+691735 | None:intergenic |
| TTATATTTAGATTCCCTACA+AGG | 0.503404 | 8.2:+689716 | None:intergenic |
| AAGCCATTGTGGACCTTGTA+GGG | 0.505067 | 8.2:-689729 | MS.gene95092:CDS |
| GAAGCTATGTATTGAATCAA+AGG | 0.507814 | 8.2:-689903 | MS.gene95092:intron |
| GTAGAAACGATGCTTATTGA+GGG | 0.508850 | 8.2:-689766 | MS.gene95092:CDS |
| CGAAATTGTAATCAAACACT+TGG | 0.523720 | 8.2:+692042 | None:intergenic |
| TTCGGAGACGACGACGATGA+TGG | 0.523895 | 8.2:-692023 | MS.gene95092:CDS |
| TTTAGATGATGTTGTTTATG+TGG | 0.528639 | 8.2:-691880 | MS.gene95092:CDS |
| ATTGGATTCAATAAGAGAAG+AGG | 0.530259 | 8.2:-691955 | MS.gene95092:CDS |
| TCTAGATTTACACGACTCCT+TGG | 0.549421 | 8.2:+689989 | None:intergenic |
| TATGTGGCAGTGGGAACAAA+TGG | 0.556548 | 8.2:-691864 | MS.gene95092:CDS |
| TGATGTTGTTTATGTGGCAG+TGG | 0.557388 | 8.2:-691874 | MS.gene95092:CDS |
| AAATAGTAGGAAAGATTCCA+AGG | 0.561559 | 8.2:-690006 | MS.gene95092:intron |
| ATAGCTTCATAAATTTCTGA+AGG | 0.573175 | 8.2:+689918 | None:intergenic |
| CAACGTTGCTGAAGCCATTG+TGG | 0.592251 | 8.2:-689740 | MS.gene95092:CDS |
| AAATGGTGGAAGTTCAAGCA+TGG | 0.604604 | 8.2:-691847 | MS.gene95092:CDS |
| TGACTTGAGGGAAAACGTGT+AGG | 0.617086 | 8.2:+691766 | None:intergenic |
| TGACCCAAGTGAAAAGCAAG+AGG | 0.622721 | 8.2:-689949 | MS.gene95092:CDS |
| GTTGGAATTAGCTTGACTTG+AGG | 0.628301 | 8.2:+691753 | None:intergenic |
| GATGTTGTTTATGTGGCAGT+GGG | 0.642705 | 8.2:-691873 | MS.gene95092:CDS |
| AGTAGTTGTAGAAGGTGTCA+CGG | 0.650946 | 8.2:+691797 | None:intergenic |
| ATTCAATAAGAGAAGAGGAG+TGG | 0.652515 | 8.2:-691950 | MS.gene95092:CDS |
| ATTCCCTACAAGGTCCACAA+TGG | 0.658292 | 8.2:+689726 | None:intergenic |
| GTGGCAGTGGGAACAAATGG+TGG | 0.662195 | 8.2:-691861 | MS.gene95092:CDS |
| GATGATGAAATCTCCAGTTG+TGG | 0.697511 | 8.2:-692092 | MS.gene95092:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATAAAATAAATAAA+AGG | - | chr8.2:690679-690698 | MS.gene95092:intron | 0.0% |
| !! | AATAAATAAAAGGTTAAAAT+TGG | - | chr8.2:690689-690708 | MS.gene95092:intron | 10.0% |
| !! | ATTATTTATCATATGAATTA+AGG | - | chr8.2:690505-690524 | MS.gene95092:intron | 10.0% |
| !! | TAAATATAAAATGACATAAA+AGG | - | chr8.2:690273-690292 | MS.gene95092:intron | 10.0% |
| !! | TTATTTATCATATGAATTAA+GGG | - | chr8.2:690506-690525 | MS.gene95092:intron | 10.0% |
| !!! | ATTCTTTTTTAATTTTTTCT+TGG | + | chr8.2:691310-691329 | None:intergenic | 10.0% |
| !!! | TTACAAACAATTTTTTTTTT+TGG | + | chr8.2:691552-691571 | None:intergenic | 10.0% |
| !!! | TTATTAAAATTAAAAGTGTT+TGG | - | chr8.2:690225-690244 | MS.gene95092:intron | 10.0% |
| !! | AACTCCAAATAAATATTATT+TGG | + | chr8.2:691402-691421 | None:intergenic | 15.0% |
| !! | ACTCCAAATAAATATTATTT+GGG | + | chr8.2:691401-691420 | None:intergenic | 15.0% |
| !! | TGATCAATATAATATATTGT+TGG | - | chr8.2:690076-690095 | MS.gene95092:intron | 15.0% |
| !! | TTCATAATCTTAAACAATTT+GGG | - | chr8.2:689902-689921 | MS.gene95092:intron | 15.0% |
| !! | TTTCATAATCTTAAACAATT+TGG | - | chr8.2:689901-689920 | MS.gene95092:intron | 15.0% |
| !!! | AATATATTGTTGGATTTTAA+GGG | - | chr8.2:690086-690105 | MS.gene95092:intron | 15.0% |
| !!! | ATCTAATTAATTTTTCTCAA+GGG | + | chr8.2:691103-691122 | None:intergenic | 15.0% |
| !!! | TAATATATTGTTGGATTTTA+AGG | - | chr8.2:690085-690104 | MS.gene95092:intron | 15.0% |
| !!! | TATCTAATTAATTTTTCTCA+AGG | + | chr8.2:691104-691123 | None:intergenic | 15.0% |
| !! | AAACCTTATATATGTATTCA+TGG | - | chr8.2:691758-691777 | MS.gene95092:CDS | 20.0% |
| !! | ATCTTGAATGTTTAAATAGT+AGG | - | chr8.2:691580-691599 | MS.gene95092:intron | 20.0% |
| !! | GAATCTAAATATAAGGAAAT+TGG | - | chr8.2:691892-691911 | MS.gene95092:CDS | 20.0% |
| !! | GATTATTTAAATTGTGACTA+TGG | + | chr8.2:689928-689947 | None:intergenic | 20.0% |
| !! | TTAATAAAATGTCATGTGTT+TGG | + | chr8.2:690807-690826 | None:intergenic | 20.0% |
| !! | TTACCTTAGATTATTAGATT+GGG | + | chr8.2:691930-691949 | None:intergenic | 20.0% |
| !! | TTTAATTGTACTTGATTACT+AGG | - | chr8.2:690002-690021 | MS.gene95092:CDS | 20.0% |
| !!! | ATTTTCATGAGAGATTTTTT+TGG | + | chr8.2:691460-691479 | None:intergenic | 20.0% |
| !!! | TAAAACCTCTGTTTTTTTTT+GGG | - | chr8.2:691218-691237 | MS.gene95092:intron | 20.0% |
| !!! | TAAACTTGCTTCAATATTTA+TGG | - | chr8.2:690467-690486 | MS.gene95092:intron | 20.0% |
| !!! | TTAAAACCTCTGTTTTTTTT+TGG | - | chr8.2:691217-691236 | MS.gene95092:intron | 20.0% |
| !!! | TTGGGATTTTTTATATTCAA+AGG | - | chr8.2:690041-690060 | MS.gene95092:intron | 20.0% |
| !!! | TTTTCATGAGAGATTTTTTT+GGG | + | chr8.2:691459-691478 | None:intergenic | 20.0% |
| ! | ACAATTAAAGTCATCAACTA+AGG | + | chr8.2:691179-691198 | None:intergenic | 25.0% |
| ! | ACTAAATCCTTCATTTCAAA+AGG | - | chr8.2:691721-691740 | MS.gene95092:intron | 25.0% |
| ! | ACTCCATGAATACATATATA+AGG | + | chr8.2:691764-691783 | None:intergenic | 25.0% |
| ! | ATAGCTTCATAAATTTCTGA+AGG | + | chr8.2:691684-691703 | None:intergenic | 25.0% |
| ! | ATTCGTAATAGATAGATATG+AGG | + | chr8.2:690911-690930 | None:intergenic | 25.0% |
| ! | CAAGTGTTTGATTACAATTT+CGG | - | chr8.2:689558-689577 | MS.gene95092:intron | 25.0% |
| ! | GAATATTGAGTAGCAAAAAT+GGG | - | chr8.2:692033-692052 | MS.gene95092:CDS | 25.0% |
| ! | GTGCCCAAATAATATTTATT+TGG | - | chr8.2:691395-691414 | MS.gene95092:intron | 25.0% |
| ! | GTTACCTTAGATTATTAGAT+TGG | + | chr8.2:691931-691950 | None:intergenic | 25.0% |
| ! | TCAAGAACAGTCTAATAATA+TGG | + | chr8.2:691014-691033 | None:intergenic | 25.0% |
| ! | TCATATCTATCTATTACGAA+TGG | - | chr8.2:690910-690929 | MS.gene95092:intron | 25.0% |
| ! | TGAATATTGAGTAGCAAAAA+TGG | - | chr8.2:692032-692051 | MS.gene95092:CDS | 25.0% |
| ! | TTATATTTAGATTCCCTACA+AGG | + | chr8.2:691886-691905 | None:intergenic | 25.0% |
| ! | TTGTAGGGAATCTAAATATA+AGG | - | chr8.2:691885-691904 | MS.gene95092:CDS | 25.0% |
| ! | TTTAATTGTACTTGGTTTCT+AGG | - | chr8.2:691190-691209 | MS.gene95092:intron | 25.0% |
| !! | AATATAAGGAAATTGGTGAT+TGG | - | chr8.2:691899-691918 | MS.gene95092:CDS | 25.0% |
| !! | GTTTGAGATAAATTTGAAGA+AGG | - | chr8.2:689614-689633 | MS.gene95092:intron | 25.0% |
| !! | TTGATGACTTTAATTGTACT+TGG | - | chr8.2:691182-691201 | MS.gene95092:intron | 25.0% |
| !! | TTTAGATGATGTTGTTTATG+TGG | - | chr8.2:689719-689738 | MS.gene95092:CDS | 25.0% |
| !!! | AGGAATTTTAAAATCGTTGT+TGG | - | chr8.2:690022-690041 | MS.gene95092:intron | 25.0% |
| !!! | GGAATTTTAAAATCGTTGTT+GGG | - | chr8.2:690023-690042 | MS.gene95092:intron | 25.0% |
| !!! | TCTTGTTTTTTGTTTTGAAG+AGG | - | chr8.2:690607-690626 | MS.gene95092:intron | 25.0% |
| AAAGCAGTACAGTACTAAAA+CGG | - | chr8.2:690566-690585 | MS.gene95092:intron | 30.0% | |
| AAATAGTAGGAAAGATTCCA+AGG | - | chr8.2:691593-691612 | MS.gene95092:intron | 30.0% | |
| ACAATTAAAGTCAGCTCTTA+TGG | + | chr8.2:689991-690010 | None:intergenic | 30.0% | |
| ACATGAGTTGTTTGTAGAAA+AGG | + | chr8.2:691957-691976 | None:intergenic | 30.0% | |
| ATAATGAAAGGCTAACATAC+AGG | - | chr8.2:691805-691824 | MS.gene95092:CDS | 30.0% | |
| ATTGGATTCAATAAGAGAAG+AGG | - | chr8.2:689644-689663 | MS.gene95092:intron | 30.0% | |
| CGAAATTGTAATCAAACACT+TGG | + | chr8.2:689560-689579 | None:intergenic | 30.0% | |
| CTACCCAATCTAATAATCTA+AGG | - | chr8.2:691924-691943 | MS.gene95092:CDS | 30.0% | |
| GAAGCTATGTATTGAATCAA+AGG | - | chr8.2:691696-691715 | MS.gene95092:intron | 30.0% | |
| GATGTGAAAATCATATGTGA+AGG | - | chr8.2:692113-692132 | MS.gene95092:CDS | 30.0% | |
| GTACCAGTAGTAATAATGAA+AGG | - | chr8.2:691793-691812 | MS.gene95092:CDS | 30.0% | |
| TAGCCTTTCATTATTACTAC+TGG | + | chr8.2:691799-691818 | None:intergenic | 30.0% | |
| TATCATATGAATTAAGGGCA+AGG | - | chr8.2:690511-690530 | MS.gene95092:intron | 30.0% | |
| TCTTGAATATCATGCTTAGT+TGG | + | chr8.2:689465-689484 | None:intergenic | 30.0% | |
| TGTAACCCAAAAAAAAACAG+AGG | + | chr8.2:691226-691245 | None:intergenic | 30.0% | |
| TTTGAAGAAGGAAAGTAGAT+TGG | - | chr8.2:689626-689645 | MS.gene95092:intron | 30.0% | |
| ! | GTGTCAAAACATTCTTGTTT+AGG | + | chr8.2:691279-691298 | None:intergenic | 30.0% |
| !!! | ATGAGAGATTTTTTTGGGAA+TGG | + | chr8.2:691454-691473 | None:intergenic | 30.0% |
| !!! | GATGTATCCTTTTGAAATGA+AGG | + | chr8.2:691731-691750 | None:intergenic | 30.0% |
| !!! | TTTTTTTGGGTTACACTCTT+CGG | - | chr8.2:691231-691250 | MS.gene95092:intron | 30.0% |
| AAAGGCTAACATACAGGTTA+AGG | - | chr8.2:691811-691830 | MS.gene95092:CDS | 35.0% | |
| AAGGCATGGAAAATGAAATC+AGG | + | chr8.2:691160-691179 | None:intergenic | 35.0% | |
| AATAAAACCACAACCACAAC+TGG | + | chr8.2:689523-689542 | None:intergenic | 35.0% | |
| AGAGAAACAGTAGTTGTAGA+AGG | + | chr8.2:689813-689832 | None:intergenic | 35.0% | |
| AGATTAACTAGGGGAGTAAT+GGG | + | chr8.2:690976-690995 | None:intergenic | 35.0% | |
| AGGAAAGCAAAATTCCATTG+CGG | - | chr8.2:692058-692077 | MS.gene95092:CDS | 35.0% | |
| AGGCATGGAAAATGAAATCA+GGG | + | chr8.2:691159-691178 | None:intergenic | 35.0% | |
| ATGGCATGAAAAATGAGTTC+AGG | + | chr8.2:689972-689991 | None:intergenic | 35.0% | |
| ATTCAATAAGAGAAGAGGAG+TGG | - | chr8.2:689649-689668 | MS.gene95092:intron | 35.0% | |
| GTAGAAACGATGCTTATTGA+GGG | - | chr8.2:691833-691852 | MS.gene95092:CDS | 35.0% | |
| GTCCAACGTTAGATTAACTA+GGG | + | chr8.2:690986-691005 | None:intergenic | 35.0% | |
| TAAAGTCATCAACTAAGGCA+TGG | + | chr8.2:691174-691193 | None:intergenic | 35.0% | |
| TAGATTAACTAGGGGAGTAA+TGG | + | chr8.2:690977-690996 | None:intergenic | 35.0% | |
| TCCAACGTTAGATTAACTAG+GGG | + | chr8.2:690985-691004 | None:intergenic | 35.0% | |
| TCTGTCCAACATTAAACTAG+AGG | + | chr8.2:691063-691082 | None:intergenic | 35.0% | |
| TGGGTGGTTATATTAGAAAG+CGG | - | chr8.2:690634-690653 | MS.gene95092:intron | 35.0% | |
| TGTCCAACGTTAGATTAACT+AGG | + | chr8.2:690987-691006 | None:intergenic | 35.0% | |
| ! | AAAAGCTAGCTTATAGCTGA+TGG | - | chr8.2:690168-690187 | MS.gene95092:intron | 35.0% |
| ! | TAAGCTAGCTTATAGCTTGT+TGG | + | chr8.2:690849-690868 | None:intergenic | 35.0% |
| ! | TTGGAATTAGCTTGACTTGA+GGG | + | chr8.2:689848-689867 | None:intergenic | 35.0% |
| !! | ATTTCCTCTTGCTTTTCACT+TGG | + | chr8.2:691657-691676 | None:intergenic | 35.0% |
| !! | TCTGAATGAGAGTACTTACA+TGG | + | chr8.2:689873-689892 | None:intergenic | 35.0% |
| !! | TTGGATTTTAAGGGTGTGTT+TGG | - | chr8.2:690095-690114 | MS.gene95092:intron | 35.0% |
| !! | TTTCCTCTTGCTTTTCACTT+GGG | + | chr8.2:691656-691675 | None:intergenic | 35.0% |
| !!! | AGTTGTGGTTGTGGTTTTAT+TGG | - | chr8.2:689522-689541 | MS.gene95092:intron | 35.0% |
| !!! | GTTGTGGTTGTGGTTTTATT+GGG | - | chr8.2:689523-689542 | MS.gene95092:intron | 35.0% |
| !!! | TTTGTTTTGAAGAGGAACGT+GGG | - | chr8.2:690615-690634 | MS.gene95092:intron | 35.0% |
| !!! | TTTTGTTTTGAAGAGGAACG+TGG | - | chr8.2:690614-690633 | MS.gene95092:intron | 35.0% |
| AGGCACAATCATTCACACTT+AGG | + | chr8.2:690891-690910 | None:intergenic | 40.0% | |
| ATTCACACTTAGGCTGTGTT+TGG | + | chr8.2:690881-690900 | None:intergenic | 40.0% | |
| GATGATGAAATCTCCAGTTG+TGG | - | chr8.2:689507-689526 | MS.gene95092:intron | 40.0% | |
| GGTAGAAACGATGCTTATTG+AGG | - | chr8.2:691832-691851 | MS.gene95092:CDS | 40.0% | |
| GTTGGACAGAGTCCTTATTA+TGG | - | chr8.2:691073-691092 | MS.gene95092:intron | 40.0% | |
| TCCCCTAGTTAATCTAACGT+TGG | - | chr8.2:690981-691000 | MS.gene95092:intron | 40.0% | |
| TCTAGATTTACACGACTCCT+TGG | + | chr8.2:691613-691632 | None:intergenic | 40.0% | |
| TTGAGTAGCAAAAATGGGTC+AGG | - | chr8.2:692038-692057 | MS.gene95092:CDS | 40.0% | |
| ! | AAATGGTGGAAGTTCAAGCA+TGG | - | chr8.2:689752-689771 | MS.gene95092:CDS | 40.0% |
| ! | ACATTAAACTAGAGGAGCGT+TGG | + | chr8.2:691055-691074 | None:intergenic | 40.0% |
| ! | ACGCTCCTCTAGTTTAATGT+TGG | - | chr8.2:691055-691074 | MS.gene95092:intron | 40.0% |
| ! | GATGTTGTTTATGTGGCAGT+GGG | - | chr8.2:689726-689745 | MS.gene95092:CDS | 40.0% |
| ! | GTTGGAATTAGCTTGACTTG+AGG | + | chr8.2:689849-689868 | None:intergenic | 40.0% |
| ! | TGATGTTGTTTATGTGGCAG+TGG | - | chr8.2:689725-689744 | MS.gene95092:CDS | 40.0% |
| !! | AGTAGTTGTAGAAGGTGTCA+CGG | + | chr8.2:689805-689824 | None:intergenic | 40.0% |
| !! | CATTAAACTAGAGGAGCGTT+GGG | + | chr8.2:691054-691073 | None:intergenic | 40.0% |
| !! | TGAGAGTACTTACATGGAGT+TGG | + | chr8.2:689867-689886 | None:intergenic | 40.0% |
| AAGCCATTGTGGACCTTGTA+GGG | - | chr8.2:691870-691889 | MS.gene95092:CDS | 45.0% | |
| ATTCCCTACAAGGTCCACAA+TGG | + | chr8.2:691876-691895 | None:intergenic | 45.0% | |
| CTCAAGGGACGTCCATAATA+AGG | + | chr8.2:691088-691107 | None:intergenic | 45.0% | |
| GAAATCTCCAGTTGTGGTTG+TGG | - | chr8.2:689513-689532 | MS.gene95092:intron | 45.0% | |
| GCAAAATTCCATTGCGGACA+TGG | - | chr8.2:692064-692083 | MS.gene95092:CDS | 45.0% | |
| TATGTGGCAGTGGGAACAAA+TGG | - | chr8.2:689735-689754 | MS.gene95092:CDS | 45.0% | |
| TGACCCAAGTGAAAAGCAAG+AGG | - | chr8.2:691650-691669 | MS.gene95092:intron | 45.0% | |
| TGACTTGAGGGAAAACGTGT+AGG | + | chr8.2:689836-689855 | None:intergenic | 45.0% | |
| TTTGAACACCATGTCCGCAA+TGG | + | chr8.2:692075-692094 | None:intergenic | 45.0% | |
| ! | TGCTTTTCACTTGGGTCAAG+TGG | + | chr8.2:691648-691667 | None:intergenic | 45.0% |
| !! | CAAGCATGGAAGCACTTTCA+TGG | - | chr8.2:689766-689785 | MS.gene95092:CDS | 45.0% |
| CAACGTTGCTGAAGCCATTG+TGG | - | chr8.2:691859-691878 | MS.gene95092:CDS | 50.0% | |
| GAAGCCATTGTGGACCTTGT+AGG | - | chr8.2:691869-691888 | MS.gene95092:CDS | 50.0% | |
| ! | AGGTGTCACGGCATGTTTCA+AGG | + | chr8.2:689793-689812 | None:intergenic | 50.0% |
| !!! | GTTTTGAAGAGGAACGTGGG+TGG | - | chr8.2:690618-690637 | MS.gene95092:intron | 50.0% |
| GTGGCAGTGGGAACAAATGG+TGG | - | chr8.2:689738-689757 | MS.gene95092:CDS | 55.0% | |
| TTCGGAGACGACGACGATGA+TGG | - | chr8.2:689576-689595 | MS.gene95092:intron | 55.0% | |
| ! | CTCTTCGGTGCACACTTGCT+TGG | - | chr8.2:691246-691265 | MS.gene95092:intron | 55.0% |
| !! | CTAGAGGAGCGTTGGGAGCG+TGG | + | chr8.2:691047-691066 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 689459 | 692162 | 689459 | ID=MS.gene95092 |
| chr8.2 | mRNA | 689459 | 692162 | 689459 | ID=MS.gene95092.t1;Parent=MS.gene95092 |
| chr8.2 | exon | 691748 | 692162 | 691748 | ID=MS.gene95092.t1.exon1;Parent=MS.gene95092.t1 |
| chr8.2 | CDS | 691748 | 692162 | 691748 | ID=cds.MS.gene95092.t1;Parent=MS.gene95092.t1 |
| chr8.2 | exon | 689904 | 690022 | 689904 | ID=MS.gene95092.t1.exon2;Parent=MS.gene95092.t1 |
| chr8.2 | CDS | 689904 | 690022 | 689904 | ID=cds.MS.gene95092.t1;Parent=MS.gene95092.t1 |
| chr8.2 | exon | 689676 | 689794 | 689676 | ID=MS.gene95092.t1.exon3;Parent=MS.gene95092.t1 |
| chr8.2 | CDS | 689676 | 689794 | 689676 | ID=cds.MS.gene95092.t1;Parent=MS.gene95092.t1 |
| chr8.2 | exon | 689459 | 689486 | 689459 | ID=MS.gene95092.t1.exon4;Parent=MS.gene95092.t1 |
| chr8.2 | CDS | 689459 | 689486 | 689459 | ID=cds.MS.gene95092.t1;Parent=MS.gene95092.t1 |
| Gene Sequence |
| Protein sequence |
