Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95221.t1 | KEH43961.1 | 39.8 | 337 | 156 | 3 | 3 | 294 | 104 | 438 | 2.40E-62 | 249.2 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95221.t1 | G8A0U6 | 39.8 | 337 | 156 | 3 | 3 | 294 | 104 | 438 | 1.7e-62 | 249.2 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049853 | MS.gene95221 | 0.809138 | 2.19E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95221.t1 | MTR_1g105785 | 39.763 | 337 | 156 | 3 | 3 | 294 | 104 | 438 | 1.12e-82 | 259 |
| MS.gene95221.t1 | MTR_8g005940 | 82.237 | 152 | 23 | 1 | 1 | 148 | 102 | 253 | 2.78e-80 | 245 |
| MS.gene95221.t1 | MTR_8g446640 | 69.730 | 185 | 19 | 1 | 1 | 148 | 83 | 267 | 1.37e-77 | 238 |
| MS.gene95221.t1 | MTR_7g024060 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_6g087820 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_5g081190 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_5g030110 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_5g091480 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_5g056290 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_3g031190 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_2g005490 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_2g007410 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_2g010570 | 69.730 | 185 | 19 | 1 | 1 | 148 | 102 | 286 | 1.64e-77 | 239 |
| MS.gene95221.t1 | MTR_7g110100 | 38.623 | 334 | 160 | 2 | 3 | 291 | 104 | 437 | 9.51e-76 | 240 |
| MS.gene95221.t1 | MTR_2g010270 | 65.979 | 194 | 20 | 2 | 1 | 148 | 83 | 276 | 6.04e-75 | 232 |
| MS.gene95221.t1 | MTR_7g451880 | 67.568 | 185 | 23 | 1 | 1 | 148 | 103 | 287 | 1.97e-74 | 231 |
| MS.gene95221.t1 | MTR_7g074180 | 67.027 | 185 | 24 | 1 | 1 | 148 | 102 | 286 | 6.94e-74 | 229 |
| MS.gene95221.t1 | MTR_4g058660 | 67.027 | 185 | 24 | 1 | 1 | 148 | 102 | 286 | 2.75e-73 | 228 |
| MS.gene95221.t1 | MTR_1g011490 | 64.324 | 185 | 20 | 2 | 1 | 148 | 102 | 277 | 6.05e-67 | 211 |
| MS.gene95221.t1 | MTR_5g045850 | 65.730 | 178 | 20 | 2 | 1 | 148 | 87 | 253 | 2.36e-66 | 209 |
| MS.gene95221.t1 | MTR_1g023370 | 61.081 | 185 | 16 | 2 | 1 | 148 | 102 | 267 | 1.34e-61 | 197 |
| MS.gene95221.t1 | MTR_7g051400 | 36.677 | 319 | 167 | 6 | 4 | 294 | 105 | 416 | 5.72e-61 | 202 |
| MS.gene95221.t1 | MTR_0048s0080 | 39.777 | 269 | 108 | 5 | 38 | 267 | 5 | 258 | 1.07e-55 | 183 |
| MS.gene95221.t1 | MTR_5g012180 | 60.736 | 163 | 18 | 2 | 19 | 148 | 75 | 224 | 9.67e-53 | 173 |
| MS.gene95221.t1 | MTR_5g071020 | 69.403 | 134 | 18 | 2 | 19 | 148 | 75 | 189 | 2.18e-52 | 171 |
| MS.gene95221.t1 | MTR_4g032565 | 46.821 | 173 | 84 | 1 | 127 | 291 | 9 | 181 | 2.61e-50 | 168 |
| MS.gene95221.t1 | MTR_3g015660 | 63.571 | 140 | 14 | 1 | 1 | 103 | 102 | 241 | 3.69e-50 | 166 |
| MS.gene95221.t1 | MTR_4g032585 | 46.243 | 173 | 85 | 1 | 127 | 291 | 9 | 181 | 1.91e-49 | 166 |
| MS.gene95221.t1 | MTR_0105s0080 | 64.706 | 136 | 11 | 1 | 1 | 99 | 58 | 193 | 4.33e-49 | 163 |
| MS.gene95221.t1 | MTR_3g036220 | 63.571 | 140 | 37 | 2 | 19 | 148 | 75 | 210 | 4.31e-46 | 155 |
| MS.gene95221.t1 | MTR_4g060433 | 57.480 | 127 | 54 | 0 | 119 | 245 | 1 | 127 | 9.41e-45 | 151 |
| MS.gene95221.t1 | MTR_8g104590 | 64.356 | 101 | 33 | 1 | 136 | 236 | 7 | 104 | 2.35e-42 | 144 |
| MS.gene95221.t1 | MTR_3g068135 | 47.024 | 168 | 46 | 2 | 38 | 205 | 6 | 130 | 4.35e-40 | 139 |
| MS.gene95221.t1 | MTR_3g452170 | 34.322 | 236 | 118 | 1 | 3 | 201 | 104 | 339 | 1.87e-39 | 143 |
| MS.gene95221.t1 | MTR_1g110330 | 54.730 | 148 | 10 | 2 | 1 | 148 | 80 | 170 | 6.30e-39 | 136 |
| MS.gene95221.t1 | MTR_1g492690 | 36.364 | 220 | 110 | 4 | 73 | 284 | 25 | 222 | 6.97e-37 | 135 |
| MS.gene95221.t1 | MTR_1g115520 | 47.403 | 154 | 39 | 3 | 146 | 291 | 2 | 121 | 8.32e-37 | 129 |
| MS.gene95221.t1 | MTR_1g082860 | 56.818 | 132 | 11 | 2 | 1 | 95 | 102 | 224 | 6.82e-36 | 130 |
| MS.gene95221.t1 | MTR_5g057125 | 36.866 | 217 | 110 | 4 | 79 | 287 | 14 | 211 | 3.20e-31 | 118 |
| MS.gene95221.t1 | MTR_7g045450 | 40.127 | 157 | 72 | 1 | 1 | 135 | 102 | 258 | 1.81e-29 | 112 |
| MS.gene95221.t1 | MTR_6g073570 | 40.127 | 157 | 72 | 1 | 1 | 135 | 102 | 258 | 1.81e-29 | 112 |
| MS.gene95221.t1 | MTR_1g052715 | 38.286 | 175 | 71 | 1 | 11 | 148 | 72 | 246 | 1.92e-28 | 112 |
| MS.gene95221.t1 | MTR_3g046650 | 29.386 | 228 | 94 | 2 | 35 | 262 | 42 | 202 | 6.45e-28 | 108 |
| MS.gene95221.t1 | MTR_2g435900 | 81.667 | 60 | 11 | 0 | 19 | 78 | 22 | 81 | 3.12e-27 | 102 |
| MS.gene95221.t1 | MTR_3g449160 | 80.000 | 60 | 12 | 0 | 19 | 78 | 22 | 81 | 7.04e-27 | 102 |
| MS.gene95221.t1 | MTR_5g019960 | 39.855 | 138 | 46 | 2 | 1 | 101 | 108 | 245 | 1.07e-22 | 94.7 |
| MS.gene95221.t1 | MTR_8g064300 | 42.056 | 107 | 54 | 1 | 192 | 290 | 115 | 221 | 2.07e-22 | 95.1 |
| MS.gene95221.t1 | MTR_2g048560 | 28.899 | 218 | 145 | 3 | 80 | 287 | 217 | 434 | 2.77e-22 | 97.1 |
| MS.gene95221.t1 | MTR_4g014890 | 24.776 | 335 | 191 | 10 | 9 | 289 | 135 | 462 | 7.14e-20 | 89.7 |
| MS.gene95221.t1 | MTR_7g039300 | 37.778 | 135 | 64 | 2 | 1 | 135 | 133 | 247 | 8.83e-20 | 86.7 |
| MS.gene95221.t1 | MTR_2g019040 | 40.741 | 135 | 35 | 2 | 51 | 148 | 4 | 130 | 2.02e-19 | 85.5 |
| MS.gene95221.t1 | MTR_3g055660 | 24.179 | 335 | 193 | 10 | 9 | 289 | 135 | 462 | 2.51e-18 | 85.1 |
| MS.gene95221.t1 | MTR_8g062030 | 26.421 | 299 | 175 | 9 | 7 | 263 | 105 | 400 | 3.34e-18 | 85.1 |
| MS.gene95221.t1 | MTR_5g093790 | 36.029 | 136 | 70 | 3 | 163 | 290 | 169 | 295 | 3.51e-18 | 84.3 |
| MS.gene95221.t1 | MTR_3g056270 | 25.545 | 321 | 177 | 10 | 19 | 287 | 279 | 589 | 6.90e-18 | 84.3 |
| MS.gene95221.t1 | MTR_6g059860 | 24.169 | 331 | 195 | 9 | 9 | 289 | 129 | 453 | 7.56e-18 | 84.0 |
| MS.gene95221.t1 | MTR_4g036240 | 25.234 | 321 | 178 | 10 | 19 | 287 | 40 | 350 | 9.50e-18 | 83.6 |
| MS.gene95221.t1 | MTR_4g036240 | 25.234 | 321 | 178 | 10 | 19 | 287 | 120 | 430 | 1.13e-17 | 83.2 |
| MS.gene95221.t1 | MTR_5g078250 | 27.778 | 216 | 143 | 7 | 80 | 285 | 217 | 429 | 6.66e-17 | 80.9 |
| MS.gene95221.t1 | MTR_3g007260 | 57.143 | 63 | 27 | 0 | 16 | 78 | 77 | 139 | 7.94e-17 | 77.0 |
| MS.gene95221.t1 | MTR_4g036240 | 29.148 | 223 | 134 | 7 | 80 | 287 | 74 | 287 | 1.82e-16 | 79.3 |
| MS.gene95221.t1 | MTR_2g450060 | 23.649 | 296 | 179 | 8 | 14 | 263 | 115 | 409 | 2.16e-16 | 79.7 |
| MS.gene95221.t1 | MTR_3g108500 | 40.698 | 86 | 38 | 2 | 199 | 276 | 20 | 100 | 5.39e-15 | 73.6 |
| MS.gene95221.t1 | MTR_5g004860 | 22.896 | 297 | 180 | 7 | 14 | 263 | 111 | 405 | 6.04e-15 | 75.1 |
| MS.gene95221.t1 | MTR_6g465570 | 47.887 | 71 | 37 | 0 | 1 | 71 | 98 | 168 | 7.53e-14 | 68.6 |
| MS.gene95221.t1 | MTR_5g041170 | 23.154 | 298 | 176 | 7 | 17 | 263 | 17 | 312 | 7.69e-14 | 71.6 |
| MS.gene95221.t1 | MTR_6g445520 | 28.251 | 223 | 136 | 9 | 77 | 283 | 80 | 294 | 8.42e-14 | 71.6 |
| MS.gene95221.t1 | MTR_8g465040 | 50.769 | 65 | 32 | 0 | 4 | 68 | 105 | 169 | 2.42e-13 | 67.4 |
| MS.gene95221.t1 | MTR_4g011200 | 54.545 | 55 | 23 | 1 | 126 | 180 | 30 | 82 | 3.80e-12 | 63.2 |
| MS.gene95221.t1 | MTR_7g450880 | 22.509 | 271 | 163 | 6 | 2 | 227 | 3 | 271 | 4.42e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95221.t1 | AT1G52950 | 22.662 | 278 | 167 | 6 | 10 | 239 | 108 | 385 | 2.77e-15 | 76.3 |
Find 58 sgRNAs with CRISPR-Local
Find 125 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAATCTTGCTGACATTTC+GGG | 0.204750 | 3.2:-13897626 | None:intergenic |
| GGAGTTGCTAATGCCTTTAA+TGG | 0.246567 | 3.2:+13897180 | MS.gene95221:CDS |
| TTGAAATCTTGCTGACATTT+CGG | 0.261370 | 3.2:-13897627 | None:intergenic |
| GCACATTACGCCCAATAAAC+TGG | 0.284869 | 3.2:-13898134 | None:intergenic |
| CGCCAGGTGACCCAGTTTAT+TGG | 0.287098 | 3.2:+13898123 | MS.gene95221:CDS |
| TAATTGAAAGTGGTGATATA+AGG | 0.310005 | 3.2:+13896774 | MS.gene95221:CDS |
| TATCAGCTTAGTCCCATTAA+AGG | 0.310808 | 3.2:-13897193 | None:intergenic |
| GGGACTAAGCTGATACTTAA+TGG | 0.330761 | 3.2:+13897201 | MS.gene95221:CDS |
| TACGTAATTTCAGATGTTAT+TGG | 0.335367 | 3.2:+13896746 | MS.gene95221:intron |
| ACTATATGTGAGATCGAAAC+TGG | 0.342217 | 3.2:+13897853 | MS.gene95221:CDS |
| GGTTATTGATCTCACTTTAG+AGG | 0.347534 | 3.2:+13896826 | MS.gene95221:CDS |
| GTCATGTACGCAGCGACTTC+AGG | 0.351625 | 3.2:-13897231 | None:intergenic |
| GCCAGGTGACCCAGTTTATT+GGG | 0.358263 | 3.2:+13898124 | MS.gene95221:CDS |
| ATGCACCCAGTGTGCTTCAT+TGG | 0.403027 | 3.2:+13897897 | MS.gene95221:CDS |
| GAAGAGAGAATTTCATTGAA+TGG | 0.432380 | 3.2:-13896594 | None:intergenic |
| GAGTTGCTAATGCCTTTAAT+GGG | 0.439194 | 3.2:+13897181 | MS.gene95221:CDS |
| TATGTTTAAGTATAATTTGA+AGG | 0.442348 | 3.2:+13898411 | MS.gene95221:CDS |
| AACTGTCGAGGAAGTGTCTA+CGG | 0.454569 | 3.2:+13896617 | MS.gene95221:CDS |
| AATTGAAAGTGGTGATATAA+GGG | 0.462435 | 3.2:+13896775 | MS.gene95221:CDS |
| GCTTTCAATTGTCATTCGAT+TGG | 0.471608 | 3.2:-13897689 | None:intergenic |
| TTTACAGATATGTCAAGGTT+CGG | 0.485784 | 3.2:+13897822 | MS.gene95221:intron |
| AAAAGGATGGAAGGAAAAGC+AGG | 0.493666 | 3.2:+13896804 | MS.gene95221:CDS |
| GAAGTCGCTGCGTACATGAC+AGG | 0.494351 | 3.2:+13897234 | MS.gene95221:CDS |
| GCCCAATAAACTGGGTCACC+TGG | 0.499906 | 3.2:-13898125 | None:intergenic |
| GATAGCAGGCGAGTGTACTT+TGG | 0.506539 | 3.2:-13896547 | None:intergenic |
| ATCAGCACATTAAAATCAGC+AGG | 0.507382 | 3.2:-13898301 | None:intergenic |
| CACATTACGCCCAATAAACT+GGG | 0.508234 | 3.2:-13898133 | None:intergenic |
| AGATCGAAACTGGGGTTGAT+TGG | 0.522728 | 3.2:+13897863 | MS.gene95221:CDS |
| TTCAAGGTTGAGGTTGGTGA+AGG | 0.523411 | 3.2:+13898340 | MS.gene95221:CDS |
| AGTTTCGATCTCACATATAG+TGG | 0.527956 | 3.2:-13897851 | None:intergenic |
| ATAAGGGAAACTGAAAAGGA+TGG | 0.532230 | 3.2:+13896791 | MS.gene95221:CDS |
| ATTGGTCATGTAATTGAAAG+TGG | 0.532582 | 3.2:+13896764 | MS.gene95221:CDS |
| TGATATAAGGGAAACTGAAA+AGG | 0.540284 | 3.2:+13896787 | MS.gene95221:CDS |
| AAAACGTTCATAGGGATAGC+AGG | 0.542724 | 3.2:-13896561 | None:intergenic |
| TGAAGGAAATGTCGTAAAGA+AGG | 0.552638 | 3.2:+13898357 | MS.gene95221:CDS |
| CGCAAGTGTAAAACTTGCAA+GGG | 0.557114 | 3.2:+13897949 | MS.gene95221:CDS |
| TCATTGGCCACCGTTGACAA+TGG | 0.563947 | 3.2:+13897913 | MS.gene95221:CDS |
| TCGCAAGTGTAAAACTTGCA+AGG | 0.564821 | 3.2:+13897948 | MS.gene95221:CDS |
| CTATATGTGAGATCGAAACT+GGG | 0.565040 | 3.2:+13897854 | MS.gene95221:CDS |
| ACTGTCGAGGAAGTGTCTAC+GGG | 0.577481 | 3.2:+13896618 | MS.gene95221:CDS |
| GGGAAACTGAAAAGGATGGA+AGG | 0.581802 | 3.2:+13896795 | MS.gene95221:CDS |
| CGGTGGCCAATGAAGCACAC+TGG | 0.591152 | 3.2:-13897903 | None:intergenic |
| GGTGGCCAATGAAGCACACT+GGG | 0.596461 | 3.2:-13897902 | None:intergenic |
| AATTCTCTCTTCAACTGTCG+AGG | 0.602150 | 3.2:+13896605 | MS.gene95221:CDS |
| CTTGCAAGGGTGCAGTCCCA+AGG | 0.605354 | 3.2:+13897962 | MS.gene95221:CDS |
| AAGTCGCTGCGTACATGACA+GGG | 0.606137 | 3.2:+13897235 | MS.gene95221:CDS |
| GTCATCGTGATGGACGACAC+AGG | 0.607107 | 3.2:+13898075 | MS.gene95221:CDS |
| AAGCATGATTGAGTCAATTG+AGG | 0.607152 | 3.2:+13897708 | MS.gene95221:CDS |
| CAAGCTGCATGTCATCGTGA+TGG | 0.617455 | 3.2:+13898065 | MS.gene95221:CDS |
| AAATATTTACAGATATGTCA+AGG | 0.627691 | 3.2:+13897817 | MS.gene95221:intron |
| TCATCGTGATGGACGACACA+GGG | 0.632753 | 3.2:+13898076 | MS.gene95221:CDS |
| AAGAAGGCATCTGATGATGT+TGG | 0.653044 | 3.2:+13898373 | MS.gene95221:CDS |
| ACGGAGCACTCCATTGTCAA+CGG | 0.655947 | 3.2:-13897923 | None:intergenic |
| CAAGTAATCTGATAAAGACG+CGG | 0.674931 | 3.2:-13897659 | None:intergenic |
| AAAGGATGGAAGGAAAAGCA+GGG | 0.682942 | 3.2:+13896805 | MS.gene95221:CDS |
| CTTGATCAATGAATGTGATG+AGG | 0.697804 | 3.2:+13898161 | MS.gene95221:CDS |
| GAGCACTCCATTGTCAACGG+TGG | 0.720804 | 3.2:-13897920 | None:intergenic |
| TATATGTGAGATCGAAACTG+GGG | 0.729438 | 3.2:+13897855 | MS.gene95221:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAACATATAAAAATGTAAA+TGG | - | chr3.2:13897264-13897283 | None:intergenic | 10.0% |
| !!! | TTTTATATGTTATAGAATAA+AGG | + | chr3.2:13897271-13897290 | MS.gene95221:intron | 10.0% |
| !! | ATTGTCCAATTATTATTAAT+AGG | + | chr3.2:13897494-13897513 | MS.gene95221:intron | 15.0% |
| !! | GTTATATTTGATTATTTGAT+AGG | + | chr3.2:13898040-13898059 | MS.gene95221:intron | 15.0% |
| !! | TATGTTTAAGTATAATTTGA+AGG | + | chr3.2:13898411-13898430 | MS.gene95221:CDS | 15.0% |
| !! | TGTAACCTATTAATAATAAT+TGG | - | chr3.2:13897502-13897521 | None:intergenic | 15.0% |
| !!! | CATTTTTCATTCTAATAAAA+GGG | - | chr3.2:13897591-13897610 | None:intergenic | 15.0% |
| !!! | GAAATTTTTAGATGTATTTT+TGG | + | chr3.2:13897747-13897766 | MS.gene95221:intron | 15.0% |
| !!! | TAAAATGTTAGTACAAATTT+TGG | - | chr3.2:13898246-13898265 | None:intergenic | 15.0% |
| !!! | TGTTGAATTTTTGAAAAATT+AGG | + | chr3.2:13897150-13897169 | MS.gene95221:intron | 15.0% |
| !! | AAATATTTACAGATATGTCA+AGG | + | chr3.2:13897817-13897836 | MS.gene95221:intron | 20.0% |
| !! | ATCAAAAATAACAAAAGTAG+TGG | - | chr3.2:13898103-13898122 | None:intergenic | 20.0% |
| !! | TATATAATTGTATAAATGCG+TGG | + | chr3.2:13898195-13898214 | MS.gene95221:intron | 20.0% |
| !! | TATTACCAAAATATCAATTC+AGG | - | chr3.2:13896921-13896940 | None:intergenic | 20.0% |
| !!! | ACATTTTATTATTTTTGAGC+AGG | + | chr3.2:13898258-13898277 | MS.gene95221:intron | 20.0% |
| !!! | CATTTTATTATTTTTGAGCA+GGG | + | chr3.2:13898259-13898278 | MS.gene95221:intron | 20.0% |
| !!! | GCATTTTTCATTCTAATAAA+AGG | - | chr3.2:13897592-13897611 | None:intergenic | 20.0% |
| !!! | GTTCAATATTTTTATGCAAA+AGG | + | chr3.2:13897789-13897808 | MS.gene95221:intron | 20.0% |
| ! | AACTGCAATATCAATATAGT+AGG | - | chr3.2:13897038-13897057 | None:intergenic | 25.0% |
| ! | AATATCAATTCAGGAACATA+AGG | - | chr3.2:13896912-13896931 | None:intergenic | 25.0% |
| ! | AATTGAAAGTGGTGATATAA+GGG | + | chr3.2:13896775-13896794 | MS.gene95221:CDS | 25.0% |
| ! | CAAATGTATGAAATTCCTAA+AGG | - | chr3.2:13896705-13896724 | None:intergenic | 25.0% |
| ! | TAATTGAAAGTGGTGATATA+AGG | + | chr3.2:13896774-13896793 | MS.gene95221:CDS | 25.0% |
| ! | TACGTAATTTCAGATGTTAT+TGG | + | chr3.2:13896746-13896765 | MS.gene95221:intron | 25.0% |
| !! | AGATAAACTTTGTTTACCTT+GGG | - | chr3.2:13897981-13898000 | None:intergenic | 25.0% |
| !! | ATGTTCCTGAATTGATATTT+TGG | + | chr3.2:13896913-13896932 | MS.gene95221:intron | 25.0% |
| !! | ATTGTTAGTGGATATCTTTA+GGG | - | chr3.2:13897370-13897389 | None:intergenic | 25.0% |
| !! | TATTGTTAGTGGATATCTTT+AGG | - | chr3.2:13897371-13897390 | None:intergenic | 25.0% |
| !! | TTTGAAAAATTAGGTGCTAT+GGG | + | chr3.2:13897159-13897178 | MS.gene95221:intron | 25.0% |
| !!! | AGAATAAAGGCAAGTTTTTT+TGG | + | chr3.2:13897284-13897303 | MS.gene95221:intron | 25.0% |
| !!! | ATGTTAGTACAAATTTTGGT+CGG | - | chr3.2:13898242-13898261 | None:intergenic | 25.0% |
| !!! | ATTTTTGTTTTTATCATGCG+TGG | + | chr3.2:13898008-13898027 | MS.gene95221:intron | 25.0% |
| !!! | TTTTGAAAAATTAGGTGCTA+TGG | + | chr3.2:13897158-13897177 | MS.gene95221:intron | 25.0% |
| ATATCAATATAGTAGGTGTG+TGG | - | chr3.2:13897031-13897050 | None:intergenic | 30.0% | |
| ATTCCTAAAGGAATGCTTAT+AGG | - | chr3.2:13896693-13896712 | None:intergenic | 30.0% | |
| ATTGGTCATGTAATTGAAAG+TGG | + | chr3.2:13896764-13896783 | MS.gene95221:CDS | 30.0% | |
| CATCAGAAAACTATTGTTAG+TGG | - | chr3.2:13897382-13897401 | None:intergenic | 30.0% | |
| GAAGAGAGAATTTCATTGAA+TGG | - | chr3.2:13896597-13896616 | None:intergenic | 30.0% | |
| TGAACTCAAAAACGTTCATA+GGG | - | chr3.2:13896572-13896591 | None:intergenic | 30.0% | |
| TGATATAAGGGAAACTGAAA+AGG | + | chr3.2:13896787-13896806 | MS.gene95221:CDS | 30.0% | |
| TTGAAATCTTGCTGACATTT+CGG | - | chr3.2:13897630-13897649 | None:intergenic | 30.0% | |
| TTGAACTCAAAAACGTTCAT+AGG | - | chr3.2:13896573-13896592 | None:intergenic | 30.0% | |
| TTTACAGATATGTCAAGGTT+CGG | + | chr3.2:13897822-13897841 | MS.gene95221:intron | 30.0% | |
| ! | CACTAACAATAGTTTTCTGA+TGG | + | chr3.2:13897380-13897399 | MS.gene95221:intron | 30.0% |
| ! | CAGATAAACTTTGTTTACCT+TGG | - | chr3.2:13897982-13898001 | None:intergenic | 30.0% |
| ! | TGACAAGCAAATTCTTTTCA+AGG | + | chr3.2:13898324-13898343 | MS.gene95221:CDS | 30.0% |
| !!! | TTTTGTTATTTTTGATCGCC+AGG | + | chr3.2:13898107-13898126 | MS.gene95221:CDS | 30.0% |
| AAATGCGTGGTCTATATATG+AGG | + | chr3.2:13898208-13898227 | MS.gene95221:intron | 35.0% | |
| AAGCATGATTGAGTCAATTG+AGG | + | chr3.2:13897708-13897727 | MS.gene95221:CDS | 35.0% | |
| AATAAGCTACCCATAAACGA+TGG | - | chr3.2:13897337-13897356 | None:intergenic | 35.0% | |
| ACTATATGTGAGATCGAAAC+TGG | + | chr3.2:13897853-13897872 | MS.gene95221:CDS | 35.0% | |
| AGTTTCGATCTCACATATAG+TGG | - | chr3.2:13897854-13897873 | None:intergenic | 35.0% | |
| ATAAGCTACCCATAAACGAT+GGG | - | chr3.2:13897336-13897355 | None:intergenic | 35.0% | |
| ATAAGGGAAACTGAAAAGGA+TGG | + | chr3.2:13896791-13896810 | MS.gene95221:CDS | 35.0% | |
| ATCAGCACATTAAAATCAGC+AGG | - | chr3.2:13898304-13898323 | None:intergenic | 35.0% | |
| CAAGTAATCTGATAAAGACG+CGG | - | chr3.2:13897662-13897681 | None:intergenic | 35.0% | |
| CTACCTATAAGCATTCCTTT+AGG | + | chr3.2:13896687-13896706 | MS.gene95221:intron | 35.0% | |
| CTATATGTGAGATCGAAACT+GGG | + | chr3.2:13897854-13897873 | MS.gene95221:CDS | 35.0% | |
| CTTGATCAATGAATGTGATG+AGG | + | chr3.2:13898161-13898180 | MS.gene95221:CDS | 35.0% | |
| GAGTTGCTAATGCCTTTAAT+GGG | + | chr3.2:13897181-13897200 | MS.gene95221:CDS | 35.0% | |
| GCTTTCAATTGTCATTCGAT+TGG | - | chr3.2:13897692-13897711 | None:intergenic | 35.0% | |
| GGTTATTGATCTCACTTTAG+AGG | + | chr3.2:13896826-13896845 | MS.gene95221:CDS | 35.0% | |
| TATATGTGAGATCGAAACTG+GGG | + | chr3.2:13897855-13897874 | MS.gene95221:CDS | 35.0% | |
| TATCAGCTTAGTCCCATTAA+AGG | - | chr3.2:13897196-13897215 | None:intergenic | 35.0% | |
| TCGTTTATGGGTAGCTTATT+TGG | + | chr3.2:13897337-13897356 | MS.gene95221:intron | 35.0% | |
| TGAAATCTTGCTGACATTTC+GGG | - | chr3.2:13897629-13897648 | None:intergenic | 35.0% | |
| TGAAGGAAATGTCGTAAAGA+AGG | + | chr3.2:13898357-13898376 | MS.gene95221:CDS | 35.0% | |
| ! | AAGTTTTACACTTGCGACAA+CGG | - | chr3.2:13897945-13897964 | None:intergenic | 35.0% |
| ! | TTGGTCGTAATTAAGTTGTC+TGG | + | chr3.2:13897303-13897322 | MS.gene95221:intron | 35.0% |
| ! | TTTGTCTGTTTCTTTGTAGC+TGG | + | chr3.2:13896862-13896881 | MS.gene95221:intron | 35.0% |
| !! | ATTCTTTTCAAGGTTGAGGT+TGG | + | chr3.2:13898334-13898353 | MS.gene95221:CDS | 35.0% |
| !! | GCAAATTCTTTTCAAGGTTG+AGG | + | chr3.2:13898330-13898349 | MS.gene95221:CDS | 35.0% |
| AAAACGTTCATAGGGATAGC+AGG | - | chr3.2:13896564-13896583 | None:intergenic | 40.0% | |
| AAAAGGATGGAAGGAAAAGC+AGG | + | chr3.2:13896804-13896823 | MS.gene95221:CDS | 40.0% | |
| AAAGGATGGAAGGAAAAGCA+GGG | + | chr3.2:13896805-13896824 | MS.gene95221:CDS | 40.0% | |
| AATTCTCTCTTCAACTGTCG+AGG | + | chr3.2:13896605-13896624 | MS.gene95221:CDS | 40.0% | |
| AGACTCAAGTAGCAAGGTAA+GGG | - | chr3.2:13897543-13897562 | None:intergenic | 40.0% | |
| AGTTTGAGAAGATGTGCACA+CGG | + | chr3.2:13897430-13897449 | MS.gene95221:intron | 40.0% | |
| CACATTACGCCCAATAAACT+GGG | - | chr3.2:13898136-13898155 | None:intergenic | 40.0% | |
| CATGATTGAGTCAATTGAGG+TGG | + | chr3.2:13897711-13897730 | MS.gene95221:intron | 40.0% | |
| CGCAAGTGTAAAACTTGCAA+GGG | + | chr3.2:13897949-13897968 | MS.gene95221:CDS | 40.0% | |
| GGAGTTGCTAATGCCTTTAA+TGG | + | chr3.2:13897180-13897199 | MS.gene95221:CDS | 40.0% | |
| GGGACTAAGCTGATACTTAA+TGG | + | chr3.2:13897201-13897220 | MS.gene95221:CDS | 40.0% | |
| GTTGTCAGGGTTGCAAAAAA+AGG | - | chr3.2:13897009-13897028 | None:intergenic | 40.0% | |
| TCGCAAGTGTAAAACTTGCA+AGG | + | chr3.2:13897948-13897967 | MS.gene95221:CDS | 40.0% | |
| TGCAAGACACGCATGTATTT+AGG | + | chr3.2:13897059-13897078 | MS.gene95221:intron | 40.0% | |
| !! | AAGAAGGCATCTGATGATGT+TGG | + | chr3.2:13898373-13898392 | MS.gene95221:CDS | 40.0% |
| !! | ATTTTTGAGCAGGGAACAGT+AGG | + | chr3.2:13898268-13898287 | MS.gene95221:intron | 40.0% |
| ACCACTTGCATTGCTCTCTT+TGG | + | chr3.2:13896958-13896977 | MS.gene95221:intron | 45.0% | |
| AGAAGATGTGCACACGGAAA+AGG | + | chr3.2:13897436-13897455 | MS.gene95221:intron | 45.0% | |
| ATAGTAGGTGTGTGGTTGTC+AGG | - | chr3.2:13897023-13897042 | None:intergenic | 45.0% | |
| CACTTGCATTGCTCTCTTTG+GGG | + | chr3.2:13896960-13896979 | MS.gene95221:intron | 45.0% | |
| CCACTTGCATTGCTCTCTTT+GGG | + | chr3.2:13896959-13896978 | MS.gene95221:intron | 45.0% | |
| CGCTACTCTTCTATTCACAC+TGG | + | chr3.2:13897563-13897582 | MS.gene95221:intron | 45.0% | |
| GAAGATGTGCACACGGAAAA+GGG | + | chr3.2:13897437-13897456 | MS.gene95221:intron | 45.0% | |
| GAGACTCAAGTAGCAAGGTA+AGG | - | chr3.2:13897544-13897563 | None:intergenic | 45.0% | |
| GATGTCCTCCCATCGTTTAT+GGG | + | chr3.2:13897325-13897344 | MS.gene95221:intron | 45.0% | |
| GCACATTACGCCCAATAAAC+TGG | - | chr3.2:13898137-13898156 | None:intergenic | 45.0% | |
| GGGAAACTGAAAAGGATGGA+AGG | + | chr3.2:13896795-13896814 | MS.gene95221:CDS | 45.0% | |
| TAGTAGGTGTGTGGTTGTCA+GGG | - | chr3.2:13897022-13897041 | None:intergenic | 45.0% | |
| ! | AGATCGAAACTGGGGTTGAT+TGG | + | chr3.2:13897863-13897882 | MS.gene95221:CDS | 45.0% |
| !! | AACTGTCGAGGAAGTGTCTA+CGG | + | chr3.2:13896617-13896636 | MS.gene95221:CDS | 45.0% |
| !! | TTCAAGGTTGAGGTTGGTGA+AGG | + | chr3.2:13898340-13898359 | MS.gene95221:CDS | 45.0% |
| AAGTCGCTGCGTACATGACA+GGG | + | chr3.2:13897235-13897254 | MS.gene95221:CDS | 50.0% | |
| AGCTACCCATAAACGATGGG+AGG | - | chr3.2:13897333-13897352 | None:intergenic | 50.0% | |
| ATGCACCCAGTGTGCTTCAT+TGG | + | chr3.2:13897897-13897916 | MS.gene95221:CDS | 50.0% | |
| CAAGCTGCATGTCATCGTGA+TGG | + | chr3.2:13898065-13898084 | MS.gene95221:CDS | 50.0% | |
| CCCAAAGAGAGCAATGCAAG+TGG | - | chr3.2:13896962-13896981 | None:intergenic | 50.0% | |
| GATAGCAGGCGAGTGTACTT+TGG | - | chr3.2:13896550-13896569 | None:intergenic | 50.0% | |
| GCCAGGTGACCCAGTTTATT+GGG | + | chr3.2:13898124-13898143 | MS.gene95221:CDS | 50.0% | |
| GGATGTCCTCCCATCGTTTA+TGG | + | chr3.2:13897324-13897343 | MS.gene95221:intron | 50.0% | |
| GTAGCGAGACTCAAGTAGCA+AGG | - | chr3.2:13897549-13897568 | None:intergenic | 50.0% | |
| TCATTGGCCACCGTTGACAA+TGG | + | chr3.2:13897913-13897932 | MS.gene95221:CDS | 50.0% | |
| ! | ACGGAGCACTCCATTGTCAA+CGG | - | chr3.2:13897926-13897945 | None:intergenic | 50.0% |
| !! | ACTGTCGAGGAAGTGTCTAC+GGG | + | chr3.2:13896618-13896637 | MS.gene95221:CDS | 50.0% |
| !! | TCATCGTGATGGACGACACA+GGG | + | chr3.2:13898076-13898095 | MS.gene95221:CDS | 50.0% |
| CGCCAGGTGACCCAGTTTAT+TGG | + | chr3.2:13898123-13898142 | MS.gene95221:CDS | 55.0% | |
| GAAGTCGCTGCGTACATGAC+AGG | + | chr3.2:13897234-13897253 | MS.gene95221:CDS | 55.0% | |
| GAGCACTCCATTGTCAACGG+TGG | - | chr3.2:13897923-13897942 | None:intergenic | 55.0% | |
| GCCCAATAAACTGGGTCACC+TGG | - | chr3.2:13898128-13898147 | None:intergenic | 55.0% | |
| GGTGGCCAATGAAGCACACT+GGG | - | chr3.2:13897905-13897924 | None:intergenic | 55.0% | |
| GTCATGTACGCAGCGACTTC+AGG | - | chr3.2:13897234-13897253 | None:intergenic | 55.0% | |
| !! | GTCATCGTGATGGACGACAC+AGG | + | chr3.2:13898075-13898094 | MS.gene95221:CDS | 55.0% |
| CGGTGGCCAATGAAGCACAC+TGG | - | chr3.2:13897906-13897925 | None:intergenic | 60.0% | |
| ! | CTTGCAAGGGTGCAGTCCCA+AGG | + | chr3.2:13897962-13897981 | MS.gene95221:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 13896528 | 13898447 | 13896528 | ID=MS.gene95221 |
| chr3.2 | mRNA | 13896528 | 13898447 | 13896528 | ID=MS.gene95221.t1;Parent=MS.gene95221 |
| chr3.2 | exon | 13896528 | 13896639 | 13896528 | ID=MS.gene95221.t1.exon1;Parent=MS.gene95221.t1 |
| chr3.2 | CDS | 13896528 | 13896639 | 13896528 | ID=cds.MS.gene95221.t1;Parent=MS.gene95221.t1 |
| chr3.2 | exon | 13896759 | 13896855 | 13896759 | ID=MS.gene95221.t1.exon2;Parent=MS.gene95221.t1 |
| chr3.2 | CDS | 13896759 | 13896855 | 13896759 | ID=cds.MS.gene95221.t1;Parent=MS.gene95221.t1 |
| chr3.2 | exon | 13897056 | 13897072 | 13897056 | ID=MS.gene95221.t1.exon3;Parent=MS.gene95221.t1 |
| chr3.2 | CDS | 13897056 | 13897072 | 13897056 | ID=cds.MS.gene95221.t1;Parent=MS.gene95221.t1 |
| chr3.2 | exon | 13897172 | 13897256 | 13897172 | ID=MS.gene95221.t1.exon4;Parent=MS.gene95221.t1 |
| chr3.2 | CDS | 13897172 | 13897256 | 13897172 | ID=cds.MS.gene95221.t1;Parent=MS.gene95221.t1 |
| chr3.2 | exon | 13897600 | 13897729 | 13897600 | ID=MS.gene95221.t1.exon5;Parent=MS.gene95221.t1 |
| chr3.2 | CDS | 13897600 | 13897729 | 13897600 | ID=cds.MS.gene95221.t1;Parent=MS.gene95221.t1 |
| chr3.2 | exon | 13897829 | 13897983 | 13897829 | ID=MS.gene95221.t1.exon6;Parent=MS.gene95221.t1 |
| chr3.2 | CDS | 13897829 | 13897983 | 13897829 | ID=cds.MS.gene95221.t1;Parent=MS.gene95221.t1 |
| chr3.2 | exon | 13898062 | 13898182 | 13898062 | ID=MS.gene95221.t1.exon7;Parent=MS.gene95221.t1 |
| chr3.2 | CDS | 13898062 | 13898182 | 13898062 | ID=cds.MS.gene95221.t1;Parent=MS.gene95221.t1 |
| chr3.2 | exon | 13898280 | 13898447 | 13898280 | ID=MS.gene95221.t1.exon8;Parent=MS.gene95221.t1 |
| chr3.2 | CDS | 13898280 | 13898447 | 13898280 | ID=cds.MS.gene95221.t1;Parent=MS.gene95221.t1 |
| Gene Sequence |
| Protein sequence |
