Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95258.t1 | XP_013466649.1 | 89.6 | 211 | 22 | 0 | 1 | 211 | 1 | 211 | 1.20E-100 | 375.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95258.t1 | Q67ZF6 | 50.0 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 1.7e-55 | 217.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95258.t1 | A0A072VRC8 | 89.6 | 211 | 22 | 0 | 1 | 211 | 1 | 211 | 8.6e-101 | 375.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene78729 | MS.gene95258 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95258.t1 | MTR_1g033390 | 89.573 | 211 | 22 | 0 | 1 | 211 | 1 | 211 | 4.22e-136 | 380 |
| MS.gene95258.t1 | MTR_1g033360 | 43.216 | 199 | 112 | 1 | 10 | 208 | 16 | 213 | 6.12e-56 | 177 |
| MS.gene95258.t1 | MTR_1g100643 | 39.048 | 210 | 125 | 1 | 1 | 207 | 5 | 214 | 5.19e-55 | 175 |
| MS.gene95258.t1 | MTR_6g017105 | 37.436 | 195 | 118 | 1 | 14 | 204 | 19 | 213 | 6.34e-42 | 142 |
| MS.gene95258.t1 | MTR_1g100643 | 39.130 | 161 | 95 | 1 | 50 | 207 | 1 | 161 | 9.57e-40 | 134 |
| MS.gene95258.t1 | MTR_5g053250 | 35.762 | 151 | 92 | 2 | 45 | 191 | 56 | 205 | 1.30e-27 | 105 |
| MS.gene95258.t1 | MTR_5g053250 | 35.616 | 146 | 89 | 2 | 50 | 191 | 1 | 145 | 1.32e-25 | 98.6 |
| MS.gene95258.t1 | MTR_5g053250 | 29.032 | 217 | 118 | 5 | 10 | 191 | 17 | 232 | 7.66e-22 | 90.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95258.t1 | AT1G14730 | 50.000 | 202 | 100 | 1 | 9 | 210 | 20 | 220 | 3.31e-73 | 221 |
| MS.gene95258.t1 | AT4G25570 | 36.449 | 214 | 133 | 1 | 1 | 211 | 5 | 218 | 4.28e-53 | 171 |
| MS.gene95258.t1 | AT4G25570 | 36.449 | 214 | 133 | 1 | 1 | 211 | 46 | 259 | 3.52e-52 | 169 |
| MS.gene95258.t1 | AT5G38630 | 37.811 | 201 | 118 | 2 | 15 | 208 | 17 | 217 | 5.69e-45 | 149 |
| MS.gene95258.t1 | AT1G26100 | 33.523 | 176 | 105 | 4 | 10 | 183 | 15 | 180 | 1.18e-24 | 97.4 |
Find 46 sgRNAs with CRISPR-Local
Find 143 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGCTTGTTTGGTTTGC+AGG | 0.165329 | 8.4:-60541525 | MS.gene95258:intron |
| TTAAAATTTAACAGCTATTA+TGG | 0.166099 | 8.4:-60541717 | MS.gene95258:intron |
| TTGGTTACATTCTTGGTTCC+TGG | 0.272137 | 8.4:-60540603 | MS.gene95258:CDS |
| CCGCATCTTTACAGTCTTCA+TGG | 0.276421 | 8.4:-60541566 | MS.gene95258:CDS |
| GCAATATGTGCTGCATTAAC+AGG | 0.288180 | 8.4:-60540510 | MS.gene95258:CDS |
| CCTTCATACTCATACTTGTT+TGG | 0.295273 | 8.4:-60542903 | MS.gene95258:CDS |
| GGTCTTTCAATTCTATTGTT+TGG | 0.306287 | 8.4:-60540417 | MS.gene95258:CDS |
| CTTCACCAGCAAGGAAAATA+AGG | 0.306596 | 8.4:+60542692 | None:intergenic |
| AGGCTTAGGAACATCATTAA+AGG | 0.317240 | 8.4:+60542712 | None:intergenic |
| ATTGTCACCTTCTGCTTGTT+TGG | 0.329434 | 8.4:-60541533 | MS.gene95258:CDS |
| TCAGGTTTGGCTCATTTGTT+TGG | 0.341278 | 8.4:-60542934 | MS.gene95258:CDS |
| GTCTTTGTGCGGGTACCGTT+TGG | 0.366595 | 8.4:+60541690 | None:intergenic |
| ACATCAGACAGAAACTAATT+TGG | 0.367590 | 8.4:-60540451 | MS.gene95258:CDS |
| ACTAATTTGGTCACCTTCAC+TGG | 0.396568 | 8.4:-60540438 | MS.gene95258:CDS |
| CTTGTTGCATCTTGTGCTCC+AGG | 0.406946 | 8.4:+60540585 | None:intergenic |
| TATCAGGAAGCTTGTTCATA+TGG | 0.419940 | 8.4:-60541666 | MS.gene95258:CDS |
| TACAGTCTTCATGGATGGAT+TGG | 0.420550 | 8.4:-60541557 | MS.gene95258:CDS |
| TGCCATTGTAATGTCAGGTT+TGG | 0.435462 | 8.4:-60542947 | MS.gene95258:CDS |
| TGCTGCATTAACAGGGTTGA+TGG | 0.454100 | 8.4:-60540502 | MS.gene95258:CDS |
| TACCCGCACAAAGACATATC+AGG | 0.463004 | 8.4:-60541682 | MS.gene95258:CDS |
| ATTGACTATGCTTCCGTGGA+TGG | 0.467721 | 8.4:-60542859 | MS.gene95258:CDS |
| GCGGAATATTTAGCATATCA+TGG | 0.474457 | 8.4:+60541585 | None:intergenic |
| ATGAGTGCCATTGTAATGTC+AGG | 0.479739 | 8.4:-60542952 | MS.gene95258:CDS |
| GGCTTAGGAACATCATTAAA+GGG | 0.482631 | 8.4:+60542713 | None:intergenic |
| CAGCAAGGAAAATAAGGCTT+AGG | 0.494373 | 8.4:+60542698 | None:intergenic |
| ATCTTTACAGTCTTCATGGA+TGG | 0.510201 | 8.4:-60541562 | MS.gene95258:CDS |
| CAAGAGCTAGAGTGCTTCCA+TGG | 0.524373 | 8.4:-60540566 | MS.gene95258:CDS |
| AGCTATTATGGCATTCCAAA+CGG | 0.526255 | 8.4:-60541705 | MS.gene95258:CDS |
| CTTCCTGATATGTCTTTGTG+CGG | 0.537316 | 8.4:+60541679 | None:intergenic |
| GGCTGGTTTCTTGAAACTGA+GGG | 0.543574 | 8.4:-60540475 | MS.gene95258:CDS |
| CCAAACAAGTATGAGTATGA+AGG | 0.556925 | 8.4:+60542903 | None:intergenic |
| ACAGGGTTGATGGAGAAGGC+TGG | 0.560279 | 8.4:-60540492 | MS.gene95258:CDS |
| GTGCTTCCATGGCACAAAGT+TGG | 0.562421 | 8.4:-60540555 | MS.gene95258:CDS |
| TTACCACCAACTTTGTGCCA+TGG | 0.569979 | 8.4:+60540549 | None:intergenic |
| TTCCTGATATGTCTTTGTGC+GGG | 0.571362 | 8.4:+60541680 | None:intergenic |
| CTTCCATGGCACAAAGTTGG+TGG | 0.575822 | 8.4:-60540552 | MS.gene95258:CDS |
| TAGAATTGAAAGACCAGTGA+AGG | 0.581454 | 8.4:+60540425 | None:intergenic |
| TGCATATACCTTCACCAGCA+AGG | 0.583434 | 8.4:+60542683 | None:intergenic |
| ATTAACAGGGTTGATGGAGA+AGG | 0.597536 | 8.4:-60540496 | MS.gene95258:CDS |
| AGGCTGGTTTCTTGAAACTG+AGG | 0.602429 | 8.4:-60540476 | MS.gene95258:CDS |
| AGGGATTGACTATGCTTCCG+TGG | 0.627678 | 8.4:-60542863 | MS.gene95258:CDS |
| CTGCAAACCAAACAAGCAGA+AGG | 0.637468 | 8.4:+60541526 | None:intergenic |
| CCATGAAGACTGTAAAGATG+CGG | 0.657005 | 8.4:+60541566 | None:intergenic |
| AGCCAAACCTGACATTACAA+TGG | 0.660651 | 8.4:+60542945 | None:intergenic |
| CAATATGTGCTGCATTAACA+GGG | 0.682347 | 8.4:-60540509 | MS.gene95258:CDS |
| GAAGACGCGAAATCCATCCA+CGG | 0.694348 | 8.4:+60542846 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAGAAAATCAATTTAATTAA+GGG | + | chr8.4:60540911-60540930 | None:intergenic | 10.0% |
| !! | TTAGAAAATCAATTTAATTA+AGG | + | chr8.4:60540912-60540931 | None:intergenic | 10.0% |
| !!! | TGAATTTTAGAATTTAAATA+GGG | + | chr8.4:60541923-60541942 | None:intergenic | 10.0% |
| !!! | TTGAATTTTAGAATTTAAAT+AGG | + | chr8.4:60541924-60541943 | None:intergenic | 10.0% |
| !! | AATATATCTCAATTTATTCA+TGG | - | chr8.4:60541584-60541603 | MS.gene95258:CDS | 15.0% |
| !! | ATATATCTCAATTTATTCAT+GGG | - | chr8.4:60541585-60541604 | MS.gene95258:CDS | 15.0% |
| !! | TTAAAATTTAACAGCTATTA+TGG | - | chr8.4:60541618-60541637 | MS.gene95258:CDS | 15.0% |
| !! | TTTATTCAATAAAAGATTGA+GGG | + | chr8.4:60541121-60541140 | None:intergenic | 15.0% |
| !!! | GATATATTGACTTTAATAAT+AGG | - | chr8.4:60542668-60542687 | MS.gene95258:intron | 15.0% |
| !!! | TCATATATAAATGCTTTTTT+AGG | - | chr8.4:60541848-60541867 | MS.gene95258:intron | 15.0% |
| !!! | TTTTATTCAATAAAAGATTG+AGG | + | chr8.4:60541122-60541141 | None:intergenic | 15.0% |
| !! | AATATCTTGATTGTTATCTT+GGG | - | chr8.4:60542340-60542359 | MS.gene95258:intron | 20.0% |
| !! | ATTCCATCGAATAAAATAAT+AGG | - | chr8.4:60541201-60541220 | MS.gene95258:intron | 20.0% |
| !! | TAAAAGAACTATCATTATCT+TGG | - | chr8.4:60542508-60542527 | MS.gene95258:intron | 20.0% |
| !! | TAATATCTTGATTGTTATCT+TGG | - | chr8.4:60542339-60542358 | MS.gene95258:intron | 20.0% |
| !!! | AAAAACAATCCAATAGTTTT+AGG | - | chr8.4:60542047-60542066 | MS.gene95258:intron | 20.0% |
| !!! | ATATAAGCTTTTGAATAAGA+CGG | - | chr8.4:60542308-60542327 | MS.gene95258:intron | 20.0% |
| !!! | GAAGTGTCTTTTAAATTTAA+AGG | + | chr8.4:60541261-60541280 | None:intergenic | 20.0% |
| !!! | TAACTTTTACTAAAATCGTA+AGG | + | chr8.4:60541464-60541483 | None:intergenic | 20.0% |
| !!! | TATTTCAATGTGTTTTTTTG+AGG | - | chr8.4:60541946-60541965 | MS.gene95258:intron | 20.0% |
| !!! | TGAGTTTTATACTTTAGAAA+TGG | + | chr8.4:60541176-60541195 | None:intergenic | 20.0% |
| !!! | TGGTAAAGTACTATTTTTTA+TGG | - | chr8.4:60542803-60542822 | MS.gene95258:intron | 20.0% |
| !!! | TGTTTTCTAGAAAGAAAAAA+GGG | + | chr8.4:60540860-60540879 | None:intergenic | 20.0% |
| !!! | TGTTTTTTTGAGGTTTTATA+GGG | - | chr8.4:60541956-60541975 | MS.gene95258:intron | 20.0% |
| !!! | TTGTTTTCTAGAAAGAAAAA+AGG | + | chr8.4:60540861-60540880 | None:intergenic | 20.0% |
| !!! | TTTAATGTTTTATTGTTTGC+AGG | - | chr8.4:60540595-60540614 | MS.gene95258:CDS | 20.0% |
| !!! | TTTTTTAGGTAAAAGTAGTT+TGG | - | chr8.4:60541862-60541881 | MS.gene95258:intron | 20.0% |
| ! | ATAAGATTTCATTTGCATAG+AGG | + | chr8.4:60541025-60541044 | None:intergenic | 25.0% |
| ! | CTAGTGTATGTTTAGATTAA+CGG | + | chr8.4:60541538-60541557 | None:intergenic | 25.0% |
| ! | TTGAAATTTCAACTATGTTG+AGG | + | chr8.4:60542451-60542470 | None:intergenic | 25.0% |
| !! | ATATTGTTGATTAATTGCAG+TGG | - | chr8.4:60542700-60542719 | MS.gene95258:CDS | 25.0% |
| !! | GTCTTATTCAAAAGCTTATA+TGG | + | chr8.4:60542309-60542328 | None:intergenic | 25.0% |
| !! | TATTGTTGATTAATTGCAGT+GGG | - | chr8.4:60542701-60542720 | MS.gene95258:CDS | 25.0% |
| !! | TTGTGTTATTGTTTGCAAAA+TGG | + | chr8.4:60542575-60542594 | None:intergenic | 25.0% |
| !!! | AAAGAAAGTGTTAAAAAGAG+TGG | - | chr8.4:60541228-60541247 | MS.gene95258:intron | 25.0% |
| !!! | ACACCTATTATTTTATTCGA+TGG | + | chr8.4:60541207-60541226 | None:intergenic | 25.0% |
| !!! | AGTCTAAAGTGTTTTTGAAT+TGG | + | chr8.4:60542628-60542647 | None:intergenic | 25.0% |
| !!! | CAATAGTTTTAGGATATGTT+CGG | - | chr8.4:60542057-60542076 | MS.gene95258:intron | 25.0% |
| !!! | CTCTTTGAAACATACTTTAA+TGG | + | chr8.4:60540746-60540765 | None:intergenic | 25.0% |
| !!! | GTGTTTTTTTGAGGTTTTAT+AGG | - | chr8.4:60541955-60541974 | MS.gene95258:intron | 25.0% |
| !!! | GTTTTCTAGAAAGAAAAAAG+GGG | + | chr8.4:60540859-60540878 | None:intergenic | 25.0% |
| !!! | TTTTCTAGAAAGAAAAAAGG+GGG | + | chr8.4:60540858-60540877 | None:intergenic | 25.0% |
| AAAAAAGAAACAGCGATTTG+GGG | + | chr8.4:60542379-60542398 | None:intergenic | 30.0% | |
| ACATCAGACAGAAACTAATT+TGG | - | chr8.4:60542884-60542903 | MS.gene95258:CDS | 30.0% | |
| AGAAAAAAGAAACAGCGATT+TGG | + | chr8.4:60542381-60542400 | None:intergenic | 30.0% | |
| AGCTTATATGGAAAACTACA+TGG | + | chr8.4:60542297-60542316 | None:intergenic | 30.0% | |
| CACTTCATATAAACATACAC+CGG | + | chr8.4:60541079-60541098 | None:intergenic | 30.0% | |
| CGAACATATCCTAAAACTAT+TGG | + | chr8.4:60542059-60542078 | None:intergenic | 30.0% | |
| GAAAAAAGAAACAGCGATTT+GGG | + | chr8.4:60542380-60542399 | None:intergenic | 30.0% | |
| GGTCTTTCAATTCTATTGTT+TGG | - | chr8.4:60542918-60542937 | MS.gene95258:CDS | 30.0% | |
| GGTTGTTTACAGAAAATTGA+AGG | - | chr8.4:60542078-60542097 | MS.gene95258:intron | 30.0% | |
| TCTAAACACTAGAAATGTCA+TGG | + | chr8.4:60541410-60541429 | None:intergenic | 30.0% | |
| TCTCAATTTATTCATGGGTT+TGG | - | chr8.4:60541590-60541609 | MS.gene95258:CDS | 30.0% | |
| TGAATATATCTCTCTTCACA+TGG | + | chr8.4:60541283-60541302 | None:intergenic | 30.0% | |
| ! | TCTAAAATCCAAACTGCATA+GGG | - | chr8.4:60541997-60542016 | MS.gene95258:intron | 30.0% |
| ! | TTGATTGTTATCTTGGGTTT+TGG | - | chr8.4:60542346-60542365 | MS.gene95258:intron | 30.0% |
| ! | TTTCTAGAAAGAAAAAAGGG+GGG | + | chr8.4:60540857-60540876 | None:intergenic | 30.0% |
| !! | ACAGAAAATTGAAGGTGTTT+AGG | - | chr8.4:60542086-60542105 | MS.gene95258:intron | 30.0% |
| !! | CACTTGATTGCTATTGTTTT+TGG | - | chr8.4:60541697-60541716 | MS.gene95258:CDS | 30.0% |
| !! | TTCTAAAATCCAAACTGCAT+AGG | - | chr8.4:60541996-60542015 | MS.gene95258:intron | 30.0% |
| !!! | TGTCATGGACACATTTTTTA+TGG | + | chr8.4:60541395-60541414 | None:intergenic | 30.0% |
| !!! | TTTTGGATTGGTTACATTCT+TGG | - | chr8.4:60542725-60542744 | MS.gene95258:intron | 30.0% |
| AAATGATATGTGGTGGTTTG+AGG | - | chr8.4:60542425-60542444 | MS.gene95258:intron | 35.0% | |
| AATATATCATGCATGAACGC+TGG | + | chr8.4:60542656-60542675 | None:intergenic | 35.0% | |
| AGCTATTATGGCATTCCAAA+CGG | - | chr8.4:60541630-60541649 | MS.gene95258:CDS | 35.0% | |
| AGGCTTAGGAACATCATTAA+AGG | + | chr8.4:60540626-60540645 | None:intergenic | 35.0% | |
| AGGGTTATGCAAATGATATG+TGG | - | chr8.4:60542415-60542434 | MS.gene95258:intron | 35.0% | |
| ATCTTTACAGTCTTCATGGA+TGG | - | chr8.4:60541773-60541792 | MS.gene95258:intron | 35.0% | |
| CAATATGTGCTGCATTAACA+GGG | - | chr8.4:60542826-60542845 | MS.gene95258:intron | 35.0% | |
| CCAAACAAGTATGAGTATGA+AGG | + | chr8.4:60540435-60540454 | None:intergenic | 35.0% | |
| CCTTCATACTCATACTTGTT+TGG | - | chr8.4:60540432-60540451 | MS.gene95258:CDS | 35.0% | |
| GCGGAATATTTAGCATATCA+TGG | + | chr8.4:60541753-60541772 | None:intergenic | 35.0% | |
| GGCTTAGGAACATCATTAAA+GGG | + | chr8.4:60540625-60540644 | None:intergenic | 35.0% | |
| GTTATGCAAATGATATGTGG+TGG | - | chr8.4:60542418-60542437 | MS.gene95258:intron | 35.0% | |
| TAAACATACACTAGTAGTCG+TGG | - | chr8.4:60541544-60541563 | MS.gene95258:CDS | 35.0% | |
| TAGAATTGAAAGACCAGTGA+AGG | + | chr8.4:60542913-60542932 | None:intergenic | 35.0% | |
| TAGATTAACGGTGACTTTGA+AGG | + | chr8.4:60541526-60541545 | None:intergenic | 35.0% | |
| TATGGTCGAAATCATCTCAA+TGG | + | chr8.4:60541377-60541396 | None:intergenic | 35.0% | |
| TCTCAATGGACACTTTCATT+TGG | + | chr8.4:60541363-60541382 | None:intergenic | 35.0% | |
| ! | CACTCTTTTACTCATCATCT+TGG | - | chr8.4:60542265-60542284 | MS.gene95258:intron | 35.0% |
| ! | TATAGGGTTTTCTTGCAGTT+CGG | - | chr8.4:60541972-60541991 | MS.gene95258:intron | 35.0% |
| ! | TATCAGGAAGCTTGTTCATA+TGG | - | chr8.4:60541669-60541688 | MS.gene95258:CDS | 35.0% |
| !! | GATTAATTGCAGTGGGTTTT+TGG | - | chr8.4:60542708-60542727 | MS.gene95258:CDS | 35.0% |
| !!! | GCTATTGTTTTTGGCATAGT+TGG | - | chr8.4:60541706-60541725 | MS.gene95258:CDS | 35.0% |
| ACTAATTTGGTCACCTTCAC+TGG | - | chr8.4:60542897-60542916 | MS.gene95258:CDS | 40.0% | |
| AGCCAAACCTGACATTACAA+TGG | + | chr8.4:60540393-60540412 | None:intergenic | 40.0% | |
| ATTGTCACCTTCTGCTTGTT+TGG | - | chr8.4:60541802-60541821 | MS.gene95258:intron | 40.0% | |
| CAGCAAGGAAAATAAGGCTT+AGG | + | chr8.4:60540640-60540659 | None:intergenic | 40.0% | |
| CCATGAAGACTGTAAAGATG+CGG | + | chr8.4:60541772-60541791 | None:intergenic | 40.0% | |
| CTTCACCAGCAAGGAAAATA+AGG | + | chr8.4:60540646-60540665 | None:intergenic | 40.0% | |
| CTTCCTGATATGTCTTTGTG+CGG | + | chr8.4:60541659-60541678 | None:intergenic | 40.0% | |
| GCAATATGTGCTGCATTAAC+AGG | - | chr8.4:60542825-60542844 | MS.gene95258:intron | 40.0% | |
| TACAGTCTTCATGGATGGAT+TGG | - | chr8.4:60541778-60541797 | MS.gene95258:intron | 40.0% | |
| TAGTAAGATATGACTCCGAG+AGG | + | chr8.4:60540689-60540708 | None:intergenic | 40.0% | |
| TGCCATTGTAATGTCAGGTT+TGG | - | chr8.4:60540388-60540407 | MS.gene95258:CDS | 40.0% | |
| TTCCTGATATGTCTTTGTGC+GGG | + | chr8.4:60541658-60541677 | None:intergenic | 40.0% | |
| TTGGTTACATTCTTGGTTCC+TGG | - | chr8.4:60542732-60542751 | MS.gene95258:intron | 40.0% | |
| TTTGTCCCATGTGAACTAAC+CGG | - | chr8.4:60541057-60541076 | MS.gene95258:intron | 40.0% | |
| ! | ACGGTGACTTTGAAGGAAAT+AGG | + | chr8.4:60541519-60541538 | None:intergenic | 40.0% |
| ! | ATACACCGGTTAGTTCACAT+GGG | + | chr8.4:60541065-60541084 | None:intergenic | 40.0% |
| ! | ATGAGTGCCATTGTAATGTC+AGG | - | chr8.4:60540383-60540402 | MS.gene95258:CDS | 40.0% |
| ! | CGGTGACTTTGAAGGAAATA+GGG | + | chr8.4:60541518-60541537 | None:intergenic | 40.0% |
| ! | TCAGGTTTGGCTCATTTGTT+TGG | - | chr8.4:60540401-60540420 | MS.gene95258:CDS | 40.0% |
| !! | ATTAACAGGGTTGATGGAGA+AGG | - | chr8.4:60542839-60542858 | MS.gene95258:intron | 40.0% |
| !! | ATTGCAGTGGGTTTTTGGAT+TGG | - | chr8.4:60542713-60542732 | MS.gene95258:CDS | 40.0% |
| !! | CTTATTTTCCTTGCTGGTGA+AGG | - | chr8.4:60540644-60540663 | MS.gene95258:intron | 40.0% |
| !!! | CTAAGCCTTATTTTCCTTGC+TGG | - | chr8.4:60540638-60540657 | MS.gene95258:intron | 40.0% |
| ATATAAGTCCCACCGCTTCT+TGG | - | chr8.4:60541145-60541164 | MS.gene95258:intron | 45.0% | |
| ATTGACTATGCTTCCGTGGA+TGG | - | chr8.4:60540476-60540495 | MS.gene95258:CDS | 45.0% | |
| CCGCATCTTTACAGTCTTCA+TGG | - | chr8.4:60541769-60541788 | MS.gene95258:intron | 45.0% | |
| CTGCAAACCAAACAAGCAGA+AGG | + | chr8.4:60541812-60541831 | None:intergenic | 45.0% | |
| GAAATGGATCACCCAAGAAG+CGG | + | chr8.4:60541160-60541179 | None:intergenic | 45.0% | |
| TAAGATATGACTCCGAGAGG+AGG | + | chr8.4:60540686-60540705 | None:intergenic | 45.0% | |
| TACCCGCACAAAGACATATC+AGG | - | chr8.4:60541653-60541672 | MS.gene95258:CDS | 45.0% | |
| TATAAGTCCCACCGCTTCTT+GGG | - | chr8.4:60541146-60541165 | MS.gene95258:intron | 45.0% | |
| TGCATATACCTTCACCAGCA+AGG | + | chr8.4:60540655-60540674 | None:intergenic | 45.0% | |
| TGCTGCATTAACAGGGTTGA+TGG | - | chr8.4:60542833-60542852 | MS.gene95258:intron | 45.0% | |
| TTACCACCAACTTTGTGCCA+TGG | + | chr8.4:60542789-60542808 | None:intergenic | 45.0% | |
| ! | CATACACCGGTTAGTTCACA+TGG | + | chr8.4:60541066-60541085 | None:intergenic | 45.0% |
| ! | GGCTGTTACATTTTCGCGAA+GGG | - | chr8.4:60540453-60540472 | MS.gene95258:CDS | 45.0% |
| ! | TGGCTGTTACATTTTCGCGA+AGG | - | chr8.4:60540452-60540471 | MS.gene95258:CDS | 45.0% |
| !! | AGGCTGGTTTCTTGAAACTG+AGG | - | chr8.4:60542859-60542878 | MS.gene95258:CDS | 45.0% |
| !! | CTTCTGCTTGTTTGGTTTGC+AGG | - | chr8.4:60541810-60541829 | MS.gene95258:intron | 45.0% |
| !! | GGCTGGTTTCTTGAAACTGA+GGG | - | chr8.4:60542860-60542879 | MS.gene95258:CDS | 45.0% |
| !! | ATTAAAATAATTAATATACA+TGG | - | chr8.4:60540954-60540973 | MS.gene95258:intron | 5.0% |
| !! | TTTCTTTATTAAATTTATTA+GGG | - | chr8.4:60542396-60542415 | MS.gene95258:intron | 5.0% |
| !!! | TTTTCTTTATTAAATTTATT+AGG | - | chr8.4:60542395-60542414 | MS.gene95258:intron | 5.0% |
| AGGGATTGACTATGCTTCCG+TGG | - | chr8.4:60540472-60540491 | MS.gene95258:CDS | 50.0% | |
| CTTCCATGGCACAAAGTTGG+TGG | - | chr8.4:60542783-60542802 | MS.gene95258:intron | 50.0% | |
| CTTGTTGCATCTTGTGCTCC+AGG | + | chr8.4:60542753-60542772 | None:intergenic | 50.0% | |
| GAAGACGCGAAATCCATCCA+CGG | + | chr8.4:60540492-60540511 | None:intergenic | 50.0% | |
| GCGTGAGAAGCTCATATGGT+AGG | - | chr8.4:60542021-60542040 | MS.gene95258:intron | 50.0% | |
| GTGCTTCCATGGCACAAAGT+TGG | - | chr8.4:60542780-60542799 | MS.gene95258:intron | 50.0% | |
| ! | CAAGAGCTAGAGTGCTTCCA+TGG | - | chr8.4:60542769-60542788 | MS.gene95258:intron | 50.0% |
| AGGGCACGCGAGAAACTTAC+AGG | + | chr8.4:60541904-60541923 | None:intergenic | 55.0% | |
| ATGGATCACCCAAGAAGCGG+TGG | + | chr8.4:60541157-60541176 | None:intergenic | 55.0% | |
| GGGCACGCGAGAAACTTACA+GGG | + | chr8.4:60541903-60541922 | None:intergenic | 55.0% | |
| TGCACTGCACTTCCTCCTCT+CGG | - | chr8.4:60540671-60540690 | MS.gene95258:intron | 55.0% | |
| TGGATCACCCAAGAAGCGGT+GGG | + | chr8.4:60541156-60541175 | None:intergenic | 55.0% | |
| ! | GTCTTTGTGCGGGTACCGTT+TGG | + | chr8.4:60541648-60541667 | None:intergenic | 55.0% |
| !! | ACAGGGTTGATGGAGAAGGC+TGG | - | chr8.4:60542843-60542862 | MS.gene95258:CDS | 55.0% |
| CTCACGCGCCCTATGCAGTT+TGG | + | chr8.4:60542008-60542027 | None:intergenic | 60.0% | |
| GGGCGCGTGAGAAGCTCATA+TGG | - | chr8.4:60542017-60542036 | MS.gene95258:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 60540383 | 60542974 | 60540383 | ID=MS.gene95258 |
| chr8.4 | mRNA | 60540383 | 60542974 | 60540383 | ID=MS.gene95258.t1;Parent=MS.gene95258 |
| chr8.4 | exon | 60542843 | 60542974 | 60542843 | ID=MS.gene95258.t1.exon1;Parent=MS.gene95258.t1 |
| chr8.4 | CDS | 60542843 | 60542974 | 60542843 | ID=cds.MS.gene95258.t1;Parent=MS.gene95258.t1 |
| chr8.4 | exon | 60542692 | 60542740 | 60542692 | ID=MS.gene95258.t1.exon2;Parent=MS.gene95258.t1 |
| chr8.4 | CDS | 60542692 | 60542740 | 60542692 | ID=cds.MS.gene95258.t1;Parent=MS.gene95258.t1 |
| chr8.4 | exon | 60541526 | 60541725 | 60541526 | ID=MS.gene95258.t1.exon3;Parent=MS.gene95258.t1 |
| chr8.4 | CDS | 60541526 | 60541725 | 60541526 | ID=cds.MS.gene95258.t1;Parent=MS.gene95258.t1 |
| chr8.4 | exon | 60540383 | 60540637 | 60540383 | ID=MS.gene95258.t1.exon4;Parent=MS.gene95258.t1 |
| chr8.4 | CDS | 60540383 | 60540637 | 60540383 | ID=cds.MS.gene95258.t1;Parent=MS.gene95258.t1 |
| Gene Sequence |
| Protein sequence |
