Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95314.t1 | XP_013463768.1 | 97 | 676 | 20 | 0 | 1 | 676 | 177 | 852 | 0.00E+00 | 1224.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95314.t1 | F4JT76 | 64.0 | 691 | 230 | 6 | 1 | 676 | 196 | 882 | 9.5e-225 | 781.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95314.t1 | A0A072V8X8 | 97.0 | 676 | 20 | 0 | 1 | 676 | 177 | 852 | 0.0e+00 | 1224.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051902 | MS.gene95314 | 0.825476 | 4.59E-54 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95314.t1 | MTR_2g047908 | 97.041 | 676 | 20 | 0 | 1 | 676 | 177 | 852 | 0.0 | 1330 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95314.t1 | AT4G19490 | 63.965 | 691 | 230 | 6 | 1 | 676 | 196 | 882 | 0.0 | 824 |
| MS.gene95314.t1 | AT4G19490 | 63.965 | 691 | 230 | 6 | 1 | 676 | 196 | 882 | 0.0 | 824 |
Find 0 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| 17174 | gene | 543616 | 557961 | 543616 | ID=MS.gene95314 |
| 17174 | mRNA | 543616 | 557961 | 543616 | ID=MS.gene95314.t1;Parent=MS.gene95314 |
| 17174 | exon | 543616 | 543864 | 543616 | ID=MS.gene95314.t1.exon1;Parent=MS.gene95314.t1 |
| 17174 | CDS | 543616 | 543864 | 543616 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 544534 | 544596 | 544534 | ID=MS.gene95314.t1.exon2;Parent=MS.gene95314.t1 |
| 17174 | CDS | 544534 | 544596 | 544534 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 545309 | 545388 | 545309 | ID=MS.gene95314.t1.exon3;Parent=MS.gene95314.t1 |
| 17174 | CDS | 545309 | 545388 | 545309 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 546567 | 546684 | 546567 | ID=MS.gene95314.t1.exon4;Parent=MS.gene95314.t1 |
| 17174 | CDS | 546567 | 546684 | 546567 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 548662 | 548733 | 548662 | ID=MS.gene95314.t1.exon5;Parent=MS.gene95314.t1 |
| 17174 | CDS | 548662 | 548733 | 548662 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 549841 | 549997 | 549841 | ID=MS.gene95314.t1.exon6;Parent=MS.gene95314.t1 |
| 17174 | CDS | 549841 | 549997 | 549841 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 550320 | 550408 | 550320 | ID=MS.gene95314.t1.exon7;Parent=MS.gene95314.t1 |
| 17174 | CDS | 550320 | 550408 | 550320 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 553808 | 554064 | 553808 | ID=MS.gene95314.t1.exon8;Parent=MS.gene95314.t1 |
| 17174 | CDS | 553808 | 554064 | 553808 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 555107 | 555278 | 555107 | ID=MS.gene95314.t1.exon9;Parent=MS.gene95314.t1 |
| 17174 | CDS | 555107 | 555278 | 555107 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 555366 | 555449 | 555366 | ID=MS.gene95314.t1.exon10;Parent=MS.gene95314.t1 |
| 17174 | CDS | 555366 | 555449 | 555366 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 555543 | 555913 | 555543 | ID=MS.gene95314.t1.exon11;Parent=MS.gene95314.t1 |
| 17174 | CDS | 555543 | 555913 | 555543 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 556437 | 556590 | 556437 | ID=MS.gene95314.t1.exon12;Parent=MS.gene95314.t1 |
| 17174 | CDS | 556437 | 556590 | 556437 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 557682 | 557763 | 557682 | ID=MS.gene95314.t1.exon13;Parent=MS.gene95314.t1 |
| 17174 | CDS | 557682 | 557763 | 557682 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| 17174 | exon | 557882 | 557961 | 557882 | ID=MS.gene95314.t1.exon14;Parent=MS.gene95314.t1 |
| 17174 | CDS | 557882 | 557961 | 557882 | ID=cds.MS.gene95314.t1;Parent=MS.gene95314.t1 |
| Gene Sequence |
| Protein sequence |
