AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051902


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051902.t1 MTR_7g107000 98.627 437 5 1 1 436 45 481 0.0 893
MS.gene051902.t1 MTR_1g054835 62.896 442 139 8 13 436 52 486 0.0 538
MS.gene051902.t1 MTR_4g130400 42.857 119 65 1 22 140 5 120 3.25e-19 90.1
MS.gene051902.t1 MTR_1g070350 45.545 101 54 1 20 119 526 626 3.66e-16 81.6
MS.gene051902.t1 MTR_5g078300 44.737 76 42 0 26 101 620 695 2.17e-12 69.7
MS.gene051902.t1 MTR_0168s0060 33.714 175 92 6 26 199 334 485 4.25e-11 65.1
MS.gene051902.t1 MTR_4g093150 32.692 104 70 0 22 125 72 175 6.74e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051902.t1 AT5G06560 50.763 459 184 11 15 434 63 518 5.55e-139 408
MS.gene051902.t1 AT3G11850 44.035 461 205 10 16 434 55 504 1.56e-117 353
MS.gene051902.t1 AT3G11850 44.035 461 205 10 16 434 55 504 1.56e-117 353
MS.gene051902.t1 AT3G54740 39.954 433 182 10 15 430 15 386 6.99e-89 275
MS.gene051902.t1 AT3G54740 39.954 433 182 10 15 430 15 386 6.99e-89 275
MS.gene051902.t1 AT3G54740 39.954 433 182 10 15 430 15 386 6.99e-89 275
MS.gene051902.t1 AT3G54740 39.954 433 182 10 15 430 15 386 6.99e-89 275
MS.gene051902.t1 AT3G54740 39.954 433 182 10 15 430 63 434 1.05e-87 274
MS.gene051902.t1 AT3G54740 39.954 433 182 10 15 430 63 434 1.05e-87 274
MS.gene051902.t1 AT3G54740 39.954 433 182 10 15 430 63 434 1.05e-87 274
MS.gene051902.t1 AT3G54740 39.954 433 182 10 15 430 63 434 1.05e-87 274
MS.gene051902.t1 AT5G16720 43.966 116 59 1 10 125 350 459 2.12e-20 94.4
MS.gene051902.t1 AT4G30830 44.860 107 59 0 20 126 12 118 1.75e-19 90.1
MS.gene051902.t1 AT4G30830 44.860 107 59 0 20 126 12 118 1.75e-19 90.1
MS.gene051902.t1 AT5G57830 44.697 132 65 1 1 132 2 125 3.70e-19 89.4
MS.gene051902.t1 AT2G24140 44.660 103 57 0 26 128 19 121 1.98e-17 83.2
MS.gene051902.t1 AT2G24140 44.660 103 57 0 26 128 19 121 1.98e-17 83.2
MS.gene051902.t1 AT1G70750 44.000 100 56 0 26 125 416 515 3.96e-15 78.2
MS.gene051902.t1 AT4G13630 47.525 101 52 1 24 123 222 322 1.75e-14 75.9
MS.gene051902.t1 AT4G13630 47.525 101 52 1 24 123 222 322 1.75e-14 75.9
MS.gene051902.t1 AT2G30690 41.584 101 58 1 20 119 609 709 5.67e-14 74.7
MS.gene051902.t1 AT2G30690 41.584 101 58 1 20 119 609 709 5.67e-14 74.7
MS.gene051902.t1 AT1G04890 49.474 95 48 0 26 120 114 208 1.93e-13 72.0
MS.gene051902.t1 AT1G08800 37.391 115 72 0 5 119 872 986 4.01e-13 72.0
MS.gene051902.t1 AT1G08800 37.391 115 72 0 5 119 872 986 4.01e-13 72.0
MS.gene051902.t1 AT1G08800 37.391 115 72 0 5 119 872 986 4.01e-13 72.0
MS.gene051902.t1 AT1G08800 37.391 115 72 0 5 119 872 986 4.01e-13 72.0
MS.gene051902.t1 AT4G13160 47.368 95 50 0 26 120 117 211 9.75e-13 68.9
MS.gene051902.t1 AT1G74830 42.056 107 58 2 26 131 305 408 1.21e-12 70.1
MS.gene051902.t1 AT2G24140 48.571 70 36 0 59 128 1 70 7.99e-12 65.9
MS.gene051902.t1 AT2G24140 48.571 70 36 0 59 128 1 70 7.99e-12 65.9

Find 111 sgRNAs with CRISPR-Local

Find 159 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AAGGGATCGTTTGAGGAATT+TGG 0.149872 7.1:+6148446 MS.gene051902:CDS
ATTATCTACCTTCTTAAAAT+TGG 0.151355 7.1:-6148703 None:intergenic
TAGAGGAATTGTTGTATAAA+AGG 0.183383 7.1:+6148202 MS.gene051902:CDS
GGCGTTGTTCGCGTTGAAAT+TGG 0.298444 7.1:+6147949 MS.gene051902:CDS
CAAAACAAGCTGTGCTTTAT+CGG 0.300589 7.1:-6148943 None:intergenic
GTAACAACTCCTAGGGAGTT+TGG 0.317502 7.1:+6148813 MS.gene051902:CDS
GCGTTGTTCGCGTTGAAATT+GGG 0.320768 7.1:+6147950 MS.gene051902:CDS
TCAAGATTTGTGTTCTGAAT+TGG 0.320822 7.1:+6148023 MS.gene051902:CDS
TCCTAGGGAGTTTGGAAATC+AGG 0.328062 7.1:+6148821 MS.gene051902:CDS
AGGAAGAGGAATAATAATAA+TGG 0.334301 7.1:+6148666 MS.gene051902:CDS
TTCACTTACGTGTGAAGTTC+AGG 0.346138 7.1:+6148239 MS.gene051902:CDS
TCATGTGACTCGTCGTCGTT+TGG 0.362096 7.1:+6148600 MS.gene051902:CDS
AGGAATAATAATAATGGGTC+AGG 0.364109 7.1:+6148672 MS.gene051902:CDS
GATGTTGAGAAGTATGTGTT+TGG 0.365629 7.1:+6148414 MS.gene051902:CDS
ACATTAACTCTCTTCTGTTC+TGG 0.372528 7.1:-6149002 None:intergenic
GGGTTGCATCGATTGTTTCC+TGG 0.382694 7.1:+6149217 MS.gene051902:CDS
TGTGACTGTAGGTATATGTT+TGG 0.385749 7.1:+6150006 MS.gene051902:intron
ATATGTTTCAAGAATGCAAT+TGG 0.391625 7.1:+6150095 MS.gene051902:CDS
CATCCATCTGACTATAAGTT+GGG 0.397922 7.1:-6148497 None:intergenic
AGAGGAATTGTTGTATAAAA+GGG 0.403693 7.1:+6148203 MS.gene051902:CDS
ATGTAAAGCTTCTTTACATA+AGG 0.410091 7.1:-6148858 None:intergenic
ATGTTGAGAAGTATGTGTTT+GGG 0.413739 7.1:+6148415 MS.gene051902:CDS
GGAAGAGGAATAATAATAAT+GGG 0.420804 7.1:+6148667 MS.gene051902:CDS
CAAGGCTCAATGGTAGCTTT+AGG 0.421216 7.1:+6148646 MS.gene051902:CDS
CTCGAATGTTTATTCGTACT+AGG 0.424909 7.1:-6148570 None:intergenic
ATGAATATGTAACAACTCCT+AGG 0.433427 7.1:+6148805 MS.gene051902:CDS
TTCAAGCACTTGAGGCGGAC+AGG 0.436618 7.1:+6148886 MS.gene051902:CDS
GTGACTGTAGGTATATGTTT+GGG 0.440852 7.1:+6150007 MS.gene051902:intron
TTGATGACCTCTCTTTCTCC+AGG 0.447921 7.1:-6149235 None:intergenic
GTTATAGAGAAGGTGATAGT+TGG 0.451471 7.1:+6148540 MS.gene051902:CDS
AAGCATAGAATGCTGAGTTA+TGG 0.453031 7.1:+6148267 MS.gene051902:CDS
CCATCCATCTGACTATAAGT+TGG 0.462484 7.1:-6148498 None:intergenic
GGAGAATAGAATATCTCAAA+TGG 0.476799 7.1:+6148467 MS.gene051902:CDS
TTGACTGAGTCAGAGGTAGA+AGG 0.478966 7.1:+6148291 MS.gene051902:CDS
CGTTGTTCGCGTTGAAATTG+GGG 0.481816 7.1:+6147951 MS.gene051902:CDS
AAATTGAACGGTGGTGGTGA+TGG 0.481967 7.1:+6147928 MS.gene051902:CDS
AGTAAGCCAGTGTTGCTAGA+TGG 0.483817 7.1:-6150033 None:intergenic
AAATTCCTCAAACGATCCCT+TGG 0.484142 7.1:-6148444 None:intergenic
CTAGTACGAATAAACATTCG+AGG 0.497895 7.1:+6148571 MS.gene051902:CDS
TGCATTACATTACATTTCAA+AGG 0.506111 7.1:-6148348 None:intergenic
CAACTTATAGTCAGATGGAT+GGG 0.510170 7.1:+6148499 MS.gene051902:CDS
TCTGAATTCAAAAGCGGACC+TGG 0.510414 7.1:+6148774 MS.gene051902:CDS
TTTGTGTTCTGAATTGGAAG+AGG 0.512404 7.1:+6148029 MS.gene051902:CDS
GTTAATGTGAGATCCTTTGT+TGG 0.516782 7.1:+6149017 MS.gene051902:CDS
TATGTTTCAAGAATGCAATT+GGG 0.520875 7.1:+6150096 MS.gene051902:CDS
GTAGATAATTTGTCCGAGGC+TGG 0.522155 7.1:+6148717 MS.gene051902:CDS
CTAAAGCTACCATTGAGCCT+TGG 0.523326 7.1:-6148645 None:intergenic
AAACTCCAAGGGATCGTTTG+AGG 0.524729 7.1:+6148439 MS.gene051902:CDS
AGATGGATGGGGATTTCAAT+GGG 0.525949 7.1:+6148511 MS.gene051902:CDS
CAGATGGATGGGGATTTCAA+TGG 0.526604 7.1:+6148510 MS.gene051902:CDS
GAAACACCATGAAATGGAAA+AGG 0.526709 7.1:+6147900 None:intergenic
TGAGAAGGCTGAGCTTGAGA+TGG 0.528315 7.1:+6148113 MS.gene051902:CDS
AATGTGAGATCCTTTGTTGG+CGG 0.533294 7.1:+6149020 MS.gene051902:CDS
GTGGGGAAATTGAACGGTGG+TGG 0.533876 7.1:+6147922 MS.gene051902:CDS
TTCAAAGGAGGATACTCATA+AGG 0.534931 7.1:-6148333 None:intergenic
GGAATAATAATAATGGGTCA+GGG 0.535516 7.1:+6148673 MS.gene051902:CDS
TTGACAAAGGACATCATGTA+AGG 0.537139 7.1:+6150064 MS.gene051902:CDS
GAATGTGAAGCCGCCAACAA+AGG 0.544205 7.1:-6149030 None:intergenic
GGAGAATCCGACACAAACTC+AGG 0.544748 7.1:-6148624 None:intergenic
TCGGATTCTCCAAGGCTCAA+TGG 0.544952 7.1:+6148636 MS.gene051902:CDS
CATGAGGCTTCAAGCACTTG+AGG 0.547249 7.1:+6148878 MS.gene051902:CDS
CCTAGGGAGTTTGGAAATCA+GGG 0.549475 7.1:+6148822 MS.gene051902:CDS
TCAATGGTAGCTTTAGGAAG+AGG 0.551484 7.1:+6148652 MS.gene051902:CDS
CGTCATATTATCACCAGCCT+CGG 0.554657 7.1:-6148730 None:intergenic
GGACAGGGAATCAATGAGGC+AGG 0.555216 7.1:+6148902 MS.gene051902:CDS
AACCCCAACTTATAGTCAGA+TGG 0.560746 7.1:+6148494 MS.gene051902:CDS
ATGTGTTTGGGGAAACTCCA+AGG 0.561976 7.1:+6148427 MS.gene051902:CDS
TCAAGCACTTGAGGCGGACA+GGG 0.562181 7.1:+6148887 MS.gene051902:CDS
GAGGACGTGTCATGACCAGC+AGG 0.563649 7.1:+6148167 MS.gene051902:CDS
AAGGACATCATGTAAGGTCG+TGG 0.564376 7.1:+6150070 MS.gene051902:CDS
ATGTGTGGCTTTACGTGAAG+CGG 0.564878 7.1:+6147978 MS.gene051902:CDS
CACCATGAAATGGAAAAGGT+GGG 0.566484 7.1:+6147904 None:intergenic
AGTTTGTGTCGGATTCTCCA+AGG 0.567679 7.1:+6148628 MS.gene051902:CDS
ACACCATGAAATGGAAAAGG+TGG 0.568062 7.1:+6147903 None:intergenic
GTTTGGCCCTGAGTTTGTGT+CGG 0.571530 7.1:+6148617 MS.gene051902:CDS
GTTCTGAATTGGAAGAGGAA+AGG 0.572811 7.1:+6148034 MS.gene051902:CDS
TGGGAAGAATGTTATAGAGA+AGG 0.574569 7.1:+6148530 MS.gene051902:CDS
CTAAAGCTAAAAGCTCCTGC+TGG 0.583273 7.1:-6148182 None:intergenic
TTACATGATGTCCTTTGTCA+AGG 0.584012 7.1:-6150062 None:intergenic
CCAACTTATAGTCAGATGGA+TGG 0.584768 7.1:+6148498 MS.gene051902:CDS
GGGCTACCATCTAGCAACAC+TGG 0.588233 7.1:+6150027 MS.gene051902:CDS
CCCTGATTTCCAAACTCCCT+AGG 0.591505 7.1:-6148822 None:intergenic
GAAAAGGTGGGGAAATTGAA+CGG 0.592525 7.1:+6147916 MS.gene051902:CDS
ATTACATTACATTTCAAAGG+AGG 0.595172 7.1:-6148345 None:intergenic
ATCCATCTGACTATAAGTTG+GGG 0.600695 7.1:-6148496 None:intergenic
AAAGGAGGATACTCATAAGG+TGG 0.605904 7.1:-6148330 None:intergenic
TGAATATGTAACAACTCCTA+GGG 0.605927 7.1:+6148806 MS.gene051902:CDS
AACTTATAGTCAGATGGATG+GGG 0.607336 7.1:+6148500 MS.gene051902:CDS
GAATAATAATAATGGGTCAG+GGG 0.608186 7.1:+6148674 MS.gene051902:CDS
AAGGAACGCTGCTTCGTCCG+CGG 0.613406 7.1:+6148053 MS.gene051902:CDS
ACCATGAAATGGAAAAGGTG+GGG 0.614402 7.1:+6147905 None:intergenic
ATTGACTCTGAATTCAAAAG+CGG 0.615809 7.1:+6148768 MS.gene051902:CDS
TGTTCGCGTTGAAATTGGGG+AGG 0.616199 7.1:+6147954 MS.gene051902:CDS
ATTGTTTCCTGGAGAAAGAG+AGG 0.622679 7.1:+6149228 MS.gene051902:CDS
TTATGGCTTGACTGAGTCAG+AGG 0.625650 7.1:+6148284 MS.gene051902:CDS
TTACTAATGCTCCTTGACAA+AGG 0.626578 7.1:+6150051 MS.gene051902:CDS
TGAAATTGGGGAGGAATGTG+TGG 0.627744 7.1:+6147963 MS.gene051902:CDS
ATGTAAAGAAGCTTTACATG+AGG 0.629070 7.1:+6148862 MS.gene051902:CDS
ATTGAGATTGCAGACTGAGA+AGG 0.630429 7.1:+6148098 MS.gene051902:CDS
CGAGGCTGGTGATAATATGA+CGG 0.632376 7.1:+6148731 MS.gene051902:CDS
TGTTGAGAAGTATGTGTTTG+GGG 0.637549 7.1:+6148416 MS.gene051902:CDS
GAAGGTAGATAATTTGTCCG+AGG 0.640933 7.1:+6148713 MS.gene051902:CDS
TGTGTTTGGGGAAACTCCAA+GGG 0.642552 7.1:+6148428 MS.gene051902:CDS
ACATATTCATCAAAAGCACC+AGG 0.644085 7.1:-6148792 None:intergenic
GAGAATCCGACACAAACTCA+GGG 0.656277 7.1:-6148623 None:intergenic
TAATGTAATGCATGTTTCTG+CGG 0.660930 7.1:+6148359 MS.gene051902:CDS
CGACATTGTTTCATTCGCCG+CGG 0.664931 7.1:-6148070 None:intergenic
AGGCGGACAGGGAATCAATG+AGG 0.683449 7.1:+6148898 MS.gene051902:CDS
ACTGAGTCAGAGGTAGAAGG+TGG 0.685416 7.1:+6148294 MS.gene051902:CDS
GAGGCTTCAAGCACTTGAGG+CGG 0.691923 7.1:+6148881 MS.gene051902:CDS
AAGGTGGGGAAATTGAACGG+TGG 0.706112 7.1:+6147919 MS.gene051902:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAACATGTATAATATCAT+AGG - chr7.1:6149506-6149525 None:intergenic 15.0%
!!! ACTAATTTTTTAAGAGATTA+TGG - chr7.1:6149564-6149583 None:intergenic 15.0%
!!! TAATGGATAATTAATTTCAA+GGG + chr7.1:6149607-6149626 MS.gene051902:intron 15.0%
!! AATGGATAATTAATTTCAAG+GGG + chr7.1:6149608-6149627 MS.gene051902:intron 20.0%
!! ATTATCTACCTTCTTAAAAT+TGG - chr7.1:6148706-6148725 None:intergenic 20.0%
!! GAAATTAATTATCCATTACT+TGG - chr7.1:6149605-6149624 None:intergenic 20.0%
!!! AAACTATTGTTTTCTTTCAA+TGG - chr7.1:6149393-6149412 None:intergenic 20.0%
!!! AAATCTGTTATTGATTTTAG+TGG + chr7.1:6149635-6149654 MS.gene051902:intron 20.0%
!!! GTAATGGATAATTAATTTCA+AGG + chr7.1:6149606-6149625 MS.gene051902:intron 20.0%
! AGAGGAATTGTTGTATAAAA+GGG + chr7.1:6148203-6148222 MS.gene051902:CDS 25.0%
! AGGAAGAGGAATAATAATAA+TGG + chr7.1:6148666-6148685 MS.gene051902:CDS 25.0%
! ATAGAAAATGTTTGTTTGAG+AGG - chr7.1:6149775-6149794 None:intergenic 25.0%
! ATATGTTTCAAGAATGCAAT+TGG + chr7.1:6150095-6150114 MS.gene051902:CDS 25.0%
! ATCTAAGCATATCCTTATAT+TGG + chr7.1:6149749-6149768 MS.gene051902:intron 25.0%
! ATGATGCATTGAAATTTCAT+AGG - chr7.1:6149483-6149502 None:intergenic 25.0%
! ATGGATAATTAATTTCAAGG+GGG + chr7.1:6149609-6149628 MS.gene051902:intron 25.0%
! ATGTAAAGCTTCTTTACATA+AGG - chr7.1:6148861-6148880 None:intergenic 25.0%
! ATTACATTACATTTCAAAGG+AGG - chr7.1:6148348-6148367 None:intergenic 25.0%
! GGAAGAGGAATAATAATAAT+GGG + chr7.1:6148667-6148686 MS.gene051902:CDS 25.0%
! TAAGGTAATTTAATTGCAGA+TGG + chr7.1:6149064-6149083 MS.gene051902:intron 25.0%
! TAGAGGAATTGTTGTATAAA+AGG + chr7.1:6148202-6148221 MS.gene051902:CDS 25.0%
! TATGTTTCAAGAATGCAATT+GGG + chr7.1:6150096-6150115 MS.gene051902:CDS 25.0%
! TGCATTACATTACATTTCAA+AGG - chr7.1:6148351-6148370 None:intergenic 25.0%
!! AGTCTTTGTTTCAAAATGTA+TGG + chr7.1:6149282-6149301 MS.gene051902:intron 25.0%
!! TGAAACAGAATAAGTATTGT+TGG - chr7.1:6149178-6149197 None:intergenic 25.0%
!! TGTTTTCTTTCAATGGTTTA+TGG - chr7.1:6149386-6149405 None:intergenic 25.0%
!!! ACAATTTAAACGTTTTGTTG+AGG + chr7.1:6148143-6148162 MS.gene051902:CDS 25.0%
!!! TATTGATTTTAGTGGAGAAA+TGG + chr7.1:6149643-6149662 MS.gene051902:intron 25.0%
ATGAATATGTAACAACTCCT+AGG + chr7.1:6148805-6148824 MS.gene051902:CDS 30.0%
ATGTAAAGAAGCTTTACATG+AGG + chr7.1:6148862-6148881 MS.gene051902:CDS 30.0%
CAGGCAATCTATATTTCTTA+AGG + chr7.1:6149446-6149465 MS.gene051902:intron 30.0%
CTTAAGAAATATAGATTGCC+TGG - chr7.1:6149448-6149467 None:intergenic 30.0%
GGAGAATAGAATATCTCAAA+TGG + chr7.1:6148467-6148486 MS.gene051902:CDS 30.0%
TGAATATGTAACAACTCCTA+GGG + chr7.1:6148806-6148825 MS.gene051902:CDS 30.0%
TTGTATCTAGCAACTATGAT+AGG + chr7.1:6149814-6149833 MS.gene051902:intron 30.0%
TTTCCTATAGTGAGTTTAGA+GGG + chr7.1:6149899-6149918 MS.gene051902:intron 30.0%
! ATCTTTCTTTTGTGTACAGT+GGG + chr7.1:6149197-6149216 MS.gene051902:intron 30.0%
! ATGTTGAGAAGTATGTGTTT+GGG + chr7.1:6148415-6148434 MS.gene051902:CDS 30.0%
! ATTGACTCTGAATTCAAAAG+CGG + chr7.1:6148768-6148787 MS.gene051902:CDS 30.0%
! CACATTCTTCACAGTTTTTA+AGG + chr7.1:6149046-6149065 MS.gene051902:CDS 30.0%
! GAAATGGTGATTACTGATTA+AGG + chr7.1:6149659-6149678 MS.gene051902:intron 30.0%
! TAATGTAATGCATGTTTCTG+CGG + chr7.1:6148359-6148378 MS.gene051902:CDS 30.0%
! TCAAGATTTGTGTTCTGAAT+TGG + chr7.1:6148023-6148042 MS.gene051902:CDS 30.0%
! TTTTCCTATAGTGAGTTTAG+AGG + chr7.1:6149898-6149917 MS.gene051902:intron 30.0%
!! AGGAATAATAATAATGGGTC+AGG + chr7.1:6148672-6148691 MS.gene051902:CDS 30.0%
!! GAATAATAATAATGGGTCAG+GGG + chr7.1:6148674-6148693 MS.gene051902:CDS 30.0%
!! GGAATAATAATAATGGGTCA+GGG + chr7.1:6148673-6148692 MS.gene051902:CDS 30.0%
!! GGATTTCTCCAATTTTAAGA+AGG + chr7.1:6148695-6148714 MS.gene051902:CDS 30.0%
!! TTTTACTGATAATGCATACC+AGG + chr7.1:6149427-6149446 MS.gene051902:intron 30.0%
AACATATACCTACAGTCACA+AGG - chr7.1:6150006-6150025 None:intergenic 35.0%
AACTTATAGTCAGATGGATG+GGG + chr7.1:6148500-6148519 MS.gene051902:CDS 35.0%
AAGCATAGAATGCTGAGTTA+TGG + chr7.1:6148267-6148286 MS.gene051902:CDS 35.0%
AATCATCTCAATCGAACCTT+GGG - chr7.1:6149132-6149151 None:intergenic 35.0%
AATTTAATTGCAGATGGTGC+AGG + chr7.1:6149070-6149089 MS.gene051902:intron 35.0%
ACATTAACTCTCTTCTGTTC+TGG - chr7.1:6149005-6149024 None:intergenic 35.0%
ACTACTTATCATACTAGGTG+AGG - chr7.1:6149309-6149328 None:intergenic 35.0%
ATCCATCTGACTATAAGTTG+GGG - chr7.1:6148499-6148518 None:intergenic 35.0%
CAAAACAAGCTGTGCTTTAT+CGG - chr7.1:6148946-6148965 None:intergenic 35.0%
CAAATCAAGTAAGTAGTCAG+TGG + chr7.1:6149255-6149274 MS.gene051902:intron 35.0%
CAACTTATAGTCAGATGGAT+GGG + chr7.1:6148499-6148518 MS.gene051902:CDS 35.0%
CACCTAGTATGATAAGTAGT+CGG + chr7.1:6149309-6149328 MS.gene051902:intron 35.0%
CATCCATCTGACTATAAGTT+GGG - chr7.1:6148500-6148519 None:intergenic 35.0%
CTAGTACGAATAAACATTCG+AGG + chr7.1:6148571-6148590 MS.gene051902:CDS 35.0%
CTCGAATGTTTATTCGTACT+AGG - chr7.1:6148573-6148592 None:intergenic 35.0%
GAATACTGACACAGTTTCTA+TGG + chr7.1:6149691-6149710 MS.gene051902:intron 35.0%
GTGACTGTAGGTATATGTTT+GGG + chr7.1:6150007-6150026 MS.gene051902:intron 35.0%
GTTAATGTGAGATCCTTTGT+TGG + chr7.1:6149017-6149036 MS.gene051902:CDS 35.0%
GTTATAGAGAAGGTGATAGT+TGG + chr7.1:6148540-6148559 MS.gene051902:CDS 35.0%
TGGGAAGAATGTTATAGAGA+AGG + chr7.1:6148530-6148549 MS.gene051902:CDS 35.0%
TGTGACTGTAGGTATATGTT+TGG + chr7.1:6150006-6150025 MS.gene051902:intron 35.0%
TTACATGATGTCCTTTGTCA+AGG - chr7.1:6150065-6150084 None:intergenic 35.0%
TTACTAATGCTCCTTGACAA+AGG + chr7.1:6150051-6150070 MS.gene051902:CDS 35.0%
TTCAAAGGAGGATACTCATA+AGG - chr7.1:6148336-6148355 None:intergenic 35.0%
TTGACAAAGGACATCATGTA+AGG + chr7.1:6150064-6150083 MS.gene051902:CDS 35.0%
TTGTTTGAGAGGCCAATATA+AGG - chr7.1:6149764-6149783 None:intergenic 35.0%
! AGTTTCTATGGAATGCCTTT+TGG + chr7.1:6149703-6149722 MS.gene051902:intron 35.0%
! CATCTTTCTTTTGTGTACAG+TGG + chr7.1:6149196-6149215 MS.gene051902:intron 35.0%
! GATGTTGAGAAGTATGTGTT+TGG + chr7.1:6148414-6148433 MS.gene051902:CDS 35.0%
! TGTTGAGAAGTATGTGTTTG+GGG + chr7.1:6148416-6148435 MS.gene051902:CDS 35.0%
! TTTGTGTTCTGAATTGGAAG+AGG + chr7.1:6148029-6148048 MS.gene051902:CDS 35.0%
!! ACATATTCATCAAAAGCACC+AGG - chr7.1:6148795-6148814 None:intergenic 35.0%
!! TTAAACGTTTTGTTGAGGAG+AGG + chr7.1:6148148-6148167 MS.gene051902:CDS 35.0%
AAAGGAGGATACTCATAAGG+TGG - chr7.1:6148333-6148352 None:intergenic 40.0%
AAATTCCTCAAACGATCCCT+TGG - chr7.1:6148447-6148466 None:intergenic 40.0%
AACCCCAACTTATAGTCAGA+TGG + chr7.1:6148494-6148513 MS.gene051902:CDS 40.0%
AAGGGATCGTTTGAGGAATT+TGG + chr7.1:6148446-6148465 MS.gene051902:CDS 40.0%
AATGTGAGATCCTTTGTTGG+CGG + chr7.1:6149020-6149039 MS.gene051902:CDS 40.0%
AGATGGATGGGGATTTCAAT+GGG + chr7.1:6148511-6148530 MS.gene051902:CDS 40.0%
AGCCGACTACTTATCATACT+AGG - chr7.1:6149314-6149333 None:intergenic 40.0%
ATTGAGATTGCAGACTGAGA+AGG + chr7.1:6148098-6148117 MS.gene051902:CDS 40.0%
ATTGTTTCCTGGAGAAAGAG+AGG + chr7.1:6149228-6149247 MS.gene051902:CDS 40.0%
CAATCATCTCAATCGAACCT+TGG - chr7.1:6149133-6149152 None:intergenic 40.0%
CCAACTTATAGTCAGATGGA+TGG + chr7.1:6148498-6148517 MS.gene051902:CDS 40.0%
CCATCCATCTGACTATAAGT+TGG - chr7.1:6148501-6148520 None:intergenic 40.0%
GAAAAGGTGGGGAAATTGAA+CGG + chr7.1:6147916-6147935 MS.gene051902:CDS 40.0%
GTACCCTCTAAACTCACTAT+AGG - chr7.1:6149905-6149924 None:intergenic 40.0%
TACACGTTAGTCAGTCCAAA+AGG - chr7.1:6149721-6149740 None:intergenic 40.0%
TTCACTTACGTGTGAAGTTC+AGG + chr7.1:6148239-6148258 MS.gene051902:CDS 40.0%
TTTGCAGCAATGCCAAGTAA+TGG + chr7.1:6149590-6149609 MS.gene051902:intron 40.0%
! GAAGGTAGATAATTTGTCCG+AGG + chr7.1:6148713-6148732 MS.gene051902:CDS 40.0%
! GTTCTGAATTGGAAGAGGAA+AGG + chr7.1:6148034-6148053 MS.gene051902:CDS 40.0%
!! TCAATGGTAGCTTTAGGAAG+AGG + chr7.1:6148652-6148671 MS.gene051902:CDS 40.0%
!!! GCTTGCTCTCTTTTTTTCAC+AGG - chr7.1:6149945-6149964 None:intergenic 40.0%
AAACTCCAAGGGATCGTTTG+AGG + chr7.1:6148439-6148458 MS.gene051902:CDS 45.0%
AAGGACATCATGTAAGGTCG+TGG + chr7.1:6150070-6150089 MS.gene051902:CDS 45.0%
AGTTTGTGTCGGATTCTCCA+AGG + chr7.1:6148628-6148647 MS.gene051902:CDS 45.0%
ATGTGTTTGGGGAAACTCCA+AGG + chr7.1:6148427-6148446 MS.gene051902:CDS 45.0%
CAAGGCTCAATGGTAGCTTT+AGG + chr7.1:6148646-6148665 MS.gene051902:CDS 45.0%
CAGATGGATGGGGATTTCAA+TGG + chr7.1:6148510-6148529 MS.gene051902:CDS 45.0%
CCTAGGGAGTTTGGAAATCA+GGG + chr7.1:6148822-6148841 MS.gene051902:CDS 45.0%
CGAACCTTGGGCTGAAAAAT+GGG - chr7.1:6149120-6149139 None:intergenic 45.0%
CGAGGCTGGTGATAATATGA+CGG + chr7.1:6148731-6148750 MS.gene051902:CDS 45.0%
CGTCATATTATCACCAGCCT+CGG - chr7.1:6148733-6148752 None:intergenic 45.0%
CGTTGTTCGCGTTGAAATTG+GGG + chr7.1:6147951-6147970 MS.gene051902:CDS 45.0%
CTAAAGCTAAAAGCTCCTGC+TGG - chr7.1:6148185-6148204 None:intergenic 45.0%
CTAAAGCTACCATTGAGCCT+TGG - chr7.1:6148648-6148667 None:intergenic 45.0%
GAGAATCCGACACAAACTCA+GGG - chr7.1:6148626-6148645 None:intergenic 45.0%
GCGTTGTTCGCGTTGAAATT+GGG + chr7.1:6147950-6147969 MS.gene051902:CDS 45.0%
GGACTGACTAACGTGTACAA+TGG + chr7.1:6149724-6149743 MS.gene051902:intron 45.0%
GTAACAACTCCTAGGGAGTT+TGG + chr7.1:6148813-6148832 MS.gene051902:CDS 45.0%
TCCTAGGGAGTTTGGAAATC+AGG + chr7.1:6148821-6148840 MS.gene051902:CDS 45.0%
TCGAACCTTGGGCTGAAAAA+TGG - chr7.1:6149121-6149140 None:intergenic 45.0%
TCTGAACTCCTTGTGACTGT+AGG + chr7.1:6149995-6150014 MS.gene051902:intron 45.0%
TCTGAATTCAAAAGCGGACC+TGG + chr7.1:6148774-6148793 MS.gene051902:CDS 45.0%
TGAAATTGGGGAGGAATGTG+TGG + chr7.1:6147963-6147982 MS.gene051902:CDS 45.0%
TGTGTTTGGGGAAACTCCAA+GGG + chr7.1:6148428-6148447 MS.gene051902:CDS 45.0%
TTATGGCTTGACTGAGTCAG+AGG + chr7.1:6148284-6148303 MS.gene051902:CDS 45.0%
TTGACTGAGTCAGAGGTAGA+AGG + chr7.1:6148291-6148310 MS.gene051902:CDS 45.0%
! AAATTGAACGGTGGTGGTGA+TGG + chr7.1:6147928-6147947 MS.gene051902:CDS 45.0%
! AGTAAGCCAGTGTTGCTAGA+TGG - chr7.1:6150036-6150055 None:intergenic 45.0%
! ATGTGTGGCTTTACGTGAAG+CGG + chr7.1:6147978-6147997 MS.gene051902:CDS 45.0%
! GTAGATAATTTGTCCGAGGC+TGG + chr7.1:6148717-6148736 MS.gene051902:CDS 45.0%
! TTGATGACCTCTCTTTCTCC+AGG - chr7.1:6149238-6149257 None:intergenic 45.0%
!! TTTGCCCATTTTTCAGCCCA+AGG + chr7.1:6149113-6149132 MS.gene051902:intron 45.0%
!!! AGCACAGCTTGTTTTGCTCA+AGG + chr7.1:6148950-6148969 MS.gene051902:CDS 45.0%
!!! GCAGGAGCTTTTAGCTTTAG+AGG + chr7.1:6148185-6148204 MS.gene051902:CDS 45.0%
AAGGTGGGGAAATTGAACGG+TGG + chr7.1:6147919-6147938 MS.gene051902:CDS 50.0%
ACTGAGTCAGAGGTAGAAGG+TGG + chr7.1:6148294-6148313 MS.gene051902:CDS 50.0%
CATGAGGCTTCAAGCACTTG+AGG + chr7.1:6148878-6148897 MS.gene051902:CDS 50.0%
CCCTGATTTCCAAACTCCCT+AGG - chr7.1:6148825-6148844 None:intergenic 50.0%
CGACATTGTTTCATTCGCCG+CGG - chr7.1:6148073-6148092 None:intergenic 50.0%
GAATGTGAAGCCGCCAACAA+AGG - chr7.1:6149033-6149052 None:intergenic 50.0%
GGAGAATCCGACACAAACTC+AGG - chr7.1:6148627-6148646 None:intergenic 50.0%
GGCGTTGTTCGCGTTGAAAT+TGG + chr7.1:6147949-6147968 MS.gene051902:CDS 50.0%
GTTTGGCCCTGAGTTTGTGT+CGG + chr7.1:6148617-6148636 MS.gene051902:CDS 50.0%
TCATGTGACTCGTCGTCGTT+TGG + chr7.1:6148600-6148619 MS.gene051902:CDS 50.0%
TCGGATTCTCCAAGGCTCAA+TGG + chr7.1:6148636-6148655 MS.gene051902:CDS 50.0%
TGAGAAGGCTGAGCTTGAGA+TGG + chr7.1:6148113-6148132 MS.gene051902:CDS 50.0%
TGTTCGCGTTGAAATTGGGG+AGG + chr7.1:6147954-6147973 MS.gene051902:CDS 50.0%
!! GGGTTGCATCGATTGTTTCC+TGG + chr7.1:6149217-6149236 MS.gene051902:CDS 50.0%
AGGCGGACAGGGAATCAATG+AGG + chr7.1:6148898-6148917 MS.gene051902:CDS 55.0%
GAGGCTTCAAGCACTTGAGG+CGG + chr7.1:6148881-6148900 MS.gene051902:CDS 55.0%
GGACAGGGAATCAATGAGGC+AGG + chr7.1:6148902-6148921 MS.gene051902:CDS 55.0%
GGGCTACCATCTAGCAACAC+TGG + chr7.1:6150027-6150046 MS.gene051902:CDS 55.0%
GTGGGGAAATTGAACGGTGG+TGG + chr7.1:6147922-6147941 MS.gene051902:CDS 55.0%
TCAAGCACTTGAGGCGGACA+GGG + chr7.1:6148887-6148906 MS.gene051902:CDS 55.0%
TTCAAGCACTTGAGGCGGAC+AGG + chr7.1:6148886-6148905 MS.gene051902:CDS 55.0%
AAGGAACGCTGCTTCGTCCG+CGG + chr7.1:6148053-6148072 MS.gene051902:CDS 60.0%
GAGGACGTGTCATGACCAGC+AGG + chr7.1:6148167-6148186 MS.gene051902:CDS 60.0%


Chromosome Type Strat End Strand Name
chr7.1 gene 6147913 6150125 6147913 ID=MS.gene051902
chr7.1 mRNA 6147913 6150125 6147913 ID=MS.gene051902.t1;Parent=MS.gene051902
chr7.1 exon 6147913 6149067 6147913 ID=MS.gene051902.t1.exon1;Parent=MS.gene051902.t1
chr7.1 CDS 6147913 6149067 6147913 ID=cds.MS.gene051902.t1;Parent=MS.gene051902.t1
chr7.1 exon 6149216 6149262 6149216 ID=MS.gene051902.t1.exon2;Parent=MS.gene051902.t1
chr7.1 CDS 6149216 6149262 6149216 ID=cds.MS.gene051902.t1;Parent=MS.gene051902.t1
chr7.1 exon 6150017 6150125 6150017 ID=MS.gene051902.t1.exon3;Parent=MS.gene051902.t1
chr7.1 CDS 6150017 6150125 6150017 ID=cds.MS.gene051902.t1;Parent=MS.gene051902.t1
Gene Sequence

>MS.gene051902

ATGGAAAAGGTGGGGAAATTGAACGGTGGTGGTGATGGCGTTGTTCGCGTTGAAATTGGGGAGGAATGTGTGGCTTTACGTGAAGCGGTTAGTAGTCAACAGAAAGCGATTCAAGATTTGTGTTCTGAATTGGAAGAGGAAAGGAACGCTGCTTCGTCCGCGGCGAATGAAACAATGTCGATGATATTGAGATTGCAGACTGAGAAGGCTGAGCTTGAGATGGAAGCGCGACAATTTAAACGTTTTGTTGAGGAGAGGACGTGTCATGACCAGCAGGAGCTTTTAGCTTTAGAGGAATTGTTGTATAAAAGGGAACAAGTGATACATTCACTTACGTGTGAAGTTCAGGCTTATAAGCATAGAATGCTGAGTTATGGCTTGACTGAGTCAGAGGTAGAAGGTGGTGATTATGAATTTCCACCTTATGAGTATCCTCCTTTGAAATGTAATGTAATGCATGTTTCTGCGGATGCTGATGATGATGATGATGTTTTTGATGTTGATGTTGAGAAGTATGTGTTTGGGGAAACTCCAAGGGATCGTTTGAGGAATTTGGAGAATAGAATATCTCAAATGGAGAAAACCCCAACTTATAGTCAGATGGATGGGGATTTCAATGGGAAGAATGTTATAGAGAAGGTGATAGTTGGACATTCTCCTAGTACGAATAAACATTCGAGGAAATTTTCATGTGACTCGTCGTCGTTTGGCCCTGAGTTTGTGTCGGATTCTCCAAGGCTCAATGGTAGCTTTAGGAAGAGGAATAATAATAATGGGTCAGGGGATTTCTCCAATTTTAAGAAGGTAGATAATTTGTCCGAGGCTGGTGATAATATGACGGACAGAGTTTACACTATTGACTCTGAATTCAAAAGCGGACCTGGTGCTTTTGATGAATATGTAACAACTCCTAGGGAGTTTGGAAATCAGGGTGATTTTGAAGATCCTTATGTAAAGAAGCTTTACATGAGGCTTCAAGCACTTGAGGCGGACAGGGAATCAATGAGGCAGGCAATCATTTCGATGCGTACCGATAAAGCACAGCTTGTTTTGCTCAAGGAAATAGCTCAACATTTGTGCAAAGAGATGCCAGAACAGAAGAGAGTTAATGTGAGATCCTTTGTTGGCGGCTTCACATTCTTCACAGTTTTTAAGGTAATTTAATTGCAGATGGTGCAGGTAGACTCGTATACTTTTTAGTTTGCCCATTTTTCAGCCCAAGGTTCGATTGAGATGATTGTTATTTGTTTCATTCATCTTAACCAACAATACTTATTCTGTTTCATCTTTCTTTTGTGTACAGTGGGTTGCATCGATTGTTTCCTGGAGAAAGAGAGGTCATCAAATCAAGTAAGTAGTCAGTGGTTACAGTCTTTGTTTCAAAATGTATGGACCTCACCTAGTATGATAAGTAGTCGGCTGAAGTGAGCAAAATCAAGCATTAGTATAATATTCTCACAACTATCTTAGCCATAAACCATTGAAAGAAAACAATAGTTTAGAATTCAAACAGCTTTTACTGATAATGCATACCAGGCAATCTATATTTCTTAAGGTTCTTTAATTTCCTATGAAATTTCAATGCATCATCCTATGATATTATACATGTTAAATACTCATCATACACTGTGTTAAACGTTTGACACAACCATAATCTCTTAAAAAATTAGTTTCTAATTTGCAGCAATGCCAAGTAATGGATAATTAATTTCAAGGGGGAGAAAATCTGTTATTGATTTTAGTGGAGAAATGGTGATTACTGATTAAGGTTTACTGTTGAATACTGACACAGTTTCTATGGAATGCCTTTTGGACTGACTAACGTGTACAATGGAAATCTAAGCATATCCTTATATTGGCCTCTCAAACAAACATTTTCTATAACTAACATAGTTGTTGTTTTGTATCTAGCAACTATGATAGGTAGCATTTTCTATAAGTAACAAAGTTGTTGTGTTGTATCTAGCAATTATGTTTATCTATCATTTTCCTATAGTGAGTTTAGAGGGTACAATTACTGTTTTTTTAACCTGTGAAAAAAAGAGAGCAAGCGATTGAGTATATGACAAAAATATTTTACTGTCTGAACTCCTTGTGACTGTAGGTATATGTTTGGGCTACCATCTAGCAACACTGGCTTACTAATGCTCCTTGACAAAGGACATCATGTAAGGTCGTGGAGATATGTTTCAAGAATGCAATTGGGAGATTAG

Protein sequence

>MS.gene051902.t1

MEKVGKLNGGGDGVVRVEIGEECVALREAVSSQQKAIQDLCSELEEERNAASSAANETMSMILRLQTEKAELEMEARQFKRFVEERTCHDQQELLALEELLYKREQVIHSLTCEVQAYKHRMLSYGLTESEVEGGDYEFPPYEYPPLKCNVMHVSADADDDDDVFDVDVEKYVFGETPRDRLRNLENRISQMEKTPTYSQMDGDFNGKNVIEKVIVGHSPSTNKHSRKFSCDSSSFGPEFVSDSPRLNGSFRKRNNNNGSGDFSNFKKVDNLSEAGDNMTDRVYTIDSEFKSGPGAFDEYVTTPREFGNQGDFEDPYVKKLYMRLQALEADRESMRQAIISMRTDKAQLVLLKEIAQHLCKEMPEQKRVNVRSFVGGFTFFTVFKWVASIVSWRKRGHQIKYMFGLPSSNTGLLMLLDKGHHVRSWRYVSRMQLGD