Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95333.t1 | BBG98627.1 | 69.9 | 439 | 71 | 2 | 1 | 378 | 1 | 439 | 1.70E-167 | 599 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95333.t1 | P10978 | 32.1 | 445 | 232 | 10 | 7 | 382 | 5 | 448 | 1.9e-55 | 218.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95333.t1 | A0A4Y1R3K4 | 69.9 | 439 | 71 | 2 | 1 | 378 | 1 | 439 | 1.2e-167 | 599.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050654 | MS.gene95333 | 0.801066 | 1.07E-48 | -1.69E-46 |
| MS.gene05615 | MS.gene95333 | 0.805972 | 1.03E-49 | -1.69E-46 |
| MS.gene058292 | MS.gene95333 | 0.808183 | 3.51E-50 | -1.69E-46 |
| MS.gene060933 | MS.gene95333 | 0.810717 | 1.00E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95333.t1 | MTR_2g039140 | 40.761 | 184 | 76 | 2 | 1 | 183 | 120 | 271 | 3.23e-32 | 123 |
| MS.gene95333.t1 | MTR_4g036430 | 89.744 | 39 | 4 | 0 | 1 | 39 | 31 | 69 | 1.11e-18 | 80.1 |
| MS.gene95333.t1 | MTR_1g027280 | 32.667 | 150 | 95 | 2 | 221 | 364 | 103 | 252 | 8.91e-18 | 82.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene95333.t1 | AT3G29785 | 58.889 | 90 | 36 | 1 | 11 | 100 | 7 | 95 | 6.13e-31 | 114 |
Find 90 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CGATACCAACTGAACTTAAT+TGG | 0.095422 | 1.3:+18014124 | None:intergenic |
| AATTCTTGAAGAATTCTTTA+TGG | 0.165694 | 1.3:+18013614 | None:intergenic |
| TCATCATCCTTCATCGATTC+TGG | 0.247368 | 1.3:+18014384 | None:intergenic |
| TTCGCCTCTTGATTCTTTGC+TGG | 0.253882 | 1.3:+18013751 | None:intergenic |
| CAACGGCGTGCTAACCGTTT+TGG | 0.273605 | 1.3:+18012535 | None:intergenic |
| TGACGCATTGATATGTTCTT+TGG | 0.284379 | 1.3:-18013692 | MS.gene95333:CDS |
| ATTCTTGAAGAATTCTTTAT+GGG | 0.356648 | 1.3:+18013615 | None:intergenic |
| TGAACTTTATTTGATGTTGA+AGG | 0.370348 | 1.3:+18014231 | None:intergenic |
| TCGCCTCTTGATTCTTTGCT+GGG | 0.374564 | 1.3:+18013752 | None:intergenic |
| ATGGTGCGGACTTTGGCTTT+TGG | 0.377376 | 1.3:-18014470 | MS.gene95333:CDS |
| GATACCAACTGAACTTAATT+GGG | 0.381678 | 1.3:+18014125 | None:intergenic |
| AATCTCTTGTGCCATAGATT+AGG | 0.388549 | 1.3:+18013280 | None:intergenic |
| CAAATGAAAATCCTAATCTA+TGG | 0.391111 | 1.3:-18013291 | MS.gene95333:CDS |
| GTAAACTTTACCAAGGTTAC+CGG | 0.407938 | 1.3:+18013585 | None:intergenic |
| GATCATGCAGCAGCCTTCTC+TGG | 0.413622 | 1.3:+18012298 | None:intergenic |
| ACAGTAGCACTCCAACTATC+TGG | 0.413891 | 1.3:+18014057 | None:intergenic |
| TGGAAATGAACAATCTTGTA+AGG | 0.417574 | 1.3:-18013560 | MS.gene95333:CDS |
| TGTCTTCCCTACCAGATAGT+TGG | 0.424640 | 1.3:-18014068 | MS.gene95333:CDS |
| TTAAGTTGAATGGGTCTGTA+TGG | 0.429127 | 1.3:-18013513 | MS.gene95333:CDS |
| ATTTGACGATGTTCGTGATC+TGG | 0.433721 | 1.3:-18013995 | MS.gene95333:CDS |
| TGAACAATCTTGTAAGGTTG+TGG | 0.438789 | 1.3:-18013554 | MS.gene95333:CDS |
| TGTAGCCTTCGTCAGCCAAC+TGG | 0.439978 | 1.3:+18013434 | None:intergenic |
| GAGATCCGACGGAGAGAGTT+GGG | 0.442215 | 1.3:-18013961 | MS.gene95333:intron |
| GCAAATGTTGCTTCCACCTC+AGG | 0.445655 | 1.3:-18013721 | MS.gene95333:CDS |
| GAAGTTAAGATTAAGTTGAA+TGG | 0.447006 | 1.3:-18013523 | MS.gene95333:CDS |
| GGAGAGCAAGGAAGAGTCTT+GGG | 0.448480 | 1.3:-18013671 | MS.gene95333:CDS |
| AAGTTCGATGGTGCGGACTT+TGG | 0.452497 | 1.3:-18014477 | MS.gene95333:CDS |
| CAGTCTTCCACGATGATGAT+TGG | 0.461264 | 1.3:-18013408 | MS.gene95333:CDS |
| AATCTATGGCACAAGAGATT+AGG | 0.468903 | 1.3:-18013277 | MS.gene95333:CDS |
| TTAGGCCATATGAGTGAAAA+GGG | 0.472747 | 1.3:-18013259 | MS.gene95333:CDS |
| AAGTTAAGATTAAGTTGAAT+GGG | 0.477594 | 1.3:-18013522 | MS.gene95333:CDS |
| TTGTTGTAACTGCAATCAAA+TGG | 0.485950 | 1.3:+18013311 | None:intergenic |
| TACAAGATTGTTCATTTCCA+AGG | 0.487050 | 1.3:+18013563 | None:intergenic |
| AACCTTGGTAAAGTTTACCT+TGG | 0.487612 | 1.3:-18013580 | MS.gene95333:CDS |
| GATGATTGGAAGATTTCAAA+AGG | 0.491602 | 1.3:-18013394 | MS.gene95333:CDS |
| ATTAGGCCATATGAGTGAAA+AGG | 0.493480 | 1.3:-18013260 | MS.gene95333:CDS |
| GAACAATCTTGTAAGGTTGT+GGG | 0.497160 | 1.3:-18013553 | MS.gene95333:CDS |
| TGGAGAGCAAGGAAGAGTCT+TGG | 0.501744 | 1.3:-18013672 | MS.gene95333:CDS |
| AATTATATCCCCGGTAACCT+TGG | 0.501940 | 1.3:-18013595 | MS.gene95333:CDS |
| TGAGGCGGTTGTTTACGCTT+CGG | 0.506448 | 1.3:-18014203 | MS.gene95333:CDS |
| GAGTCTTGGGTGTTAGACTC+TGG | 0.518950 | 1.3:-18013658 | MS.gene95333:CDS |
| CAACATGGGCGATGCCAAAA+CGG | 0.525887 | 1.3:-18012549 | MS.gene95333:intron |
| CACAGCTGTGAGTAGCTCCT+CGG | 0.527844 | 1.3:-18014034 | MS.gene95333:CDS |
| TATGAGTGAAAAGGGGATGA+AGG | 0.531430 | 1.3:-18013251 | MS.gene95333:intron |
| TTCGTCAGCCAACTGGCCTA+CGG | 0.532309 | 1.3:+18013441 | None:intergenic |
| ACAGCTGTGAGTAGCTCCTC+GGG | 0.532462 | 1.3:-18014033 | MS.gene95333:CDS |
| CTTAATCTCCGTAGGCCAGT+TGG | 0.533019 | 1.3:-18013449 | MS.gene95333:CDS |
| AAAGAAACCAGAATCGATGA+AGG | 0.539324 | 1.3:-18014391 | MS.gene95333:CDS |
| TGCGTCACCTCCTCCTGAGG+TGG | 0.540756 | 1.3:+18013708 | None:intergenic |
| TAAACTTTACCAAGGTTACC+GGG | 0.543499 | 1.3:+18013586 | None:intergenic |
| AGAGATCCGACGGAGAGAGT+TGG | 0.549236 | 1.3:-18013962 | MS.gene95333:CDS |
| GGTACTCTTTACAAGACAGC+TGG | 0.550162 | 1.3:-18013340 | MS.gene95333:CDS |
| CAAATAAAGTTCATTTGATG+AGG | 0.550433 | 1.3:-18014221 | MS.gene95333:CDS |
| TCTTGTAAGGTTGTGGGCAA+AGG | 0.550702 | 1.3:-18013547 | MS.gene95333:CDS |
| AACCACCGCTGGTCTTATGA+AGG | 0.557775 | 1.3:-18014277 | MS.gene95333:CDS |
| TAGCACTCCAACTATCTGGT+AGG | 0.558134 | 1.3:+18014061 | None:intergenic |
| TAAGTTGAATGGGTCTGTAT+GGG | 0.558149 | 1.3:-18013512 | MS.gene95333:CDS |
| TTTACGCTTCGGATGACAGA+AGG | 0.562705 | 1.3:-18014192 | MS.gene95333:CDS |
| GTGAAAATTGAAAAGTTCGA+TGG | 0.563926 | 1.3:-18014489 | MS.gene95333:CDS |
| ACAACCCAATTAAGTTCAGT+TGG | 0.568124 | 1.3:-18014129 | MS.gene95333:CDS |
| GTTGCTTCCACCTCAGGAGG+AGG | 0.568689 | 1.3:-18013715 | MS.gene95333:CDS |
| TTCTTCAAGAATTATATCCC+CGG | 0.581954 | 1.3:-18013604 | MS.gene95333:CDS |
| GATATGTTCTTTGGAGAGCA+AGG | 0.586306 | 1.3:-18013683 | MS.gene95333:CDS |
| GATGACAGAAGGCGCATCAG+TGG | 0.593273 | 1.3:-18014181 | MS.gene95333:CDS |
| TTCTCAGTGAAGAGATCCGA+CGG | 0.596721 | 1.3:-18013972 | MS.gene95333:CDS |
| AGCACTCCAACTATCTGGTA+GGG | 0.597976 | 1.3:+18014062 | None:intergenic |
| ATAAAGTTCATTTGATGAGG+CGG | 0.598437 | 1.3:-18014218 | MS.gene95333:CDS |
| CTTCTCGATAGACAAGCACT+TGG | 0.601850 | 1.3:-18014354 | MS.gene95333:CDS |
| AATGTTGCTTCCACCTCAGG+AGG | 0.603928 | 1.3:-18013718 | MS.gene95333:CDS |
| AATCGATGAAGGATGATGAG+TGG | 0.606445 | 1.3:-18014380 | MS.gene95333:CDS |
| AATTGAAAAGTTCGATGGTG+CGG | 0.608192 | 1.3:-18014484 | MS.gene95333:CDS |
| CAAGTGCTTGTCTATCGAGA+AGG | 0.612004 | 1.3:+18014355 | None:intergenic |
| TATGGCTGCAGACGAAGGAA+AGG | 0.614378 | 1.3:-18014511 | MS.gene95333:CDS |
| CTAGAGTAAGAGACCAGAGA+AGG | 0.614420 | 1.3:-18012311 | MS.gene95333:intron |
| TTCCAAGGTAAACTTTACCA+AGG | 0.615217 | 1.3:+18013578 | None:intergenic |
| GGAGTTATGGCTGCAGACGA+AGG | 0.617375 | 1.3:-18014516 | None:intergenic |
| ATTCACCCAACTCTCTCCGT+CGG | 0.618585 | 1.3:+18013956 | None:intergenic |
| AGCCTTCATAAGACCAGCGG+TGG | 0.620835 | 1.3:+18014275 | None:intergenic |
| GAATCAAGAGGCGAAAGATG+AGG | 0.623736 | 1.3:-18013743 | MS.gene95333:CDS |
| GCAAAAGAGAAAACCACCGC+TGG | 0.626545 | 1.3:-18014288 | MS.gene95333:CDS |
| CAATGCGTCACCTCCTCCTG+AGG | 0.628987 | 1.3:+18013705 | None:intergenic |
| TGGTATCGAATTTGACGATG+AGG | 0.639552 | 1.3:-18014109 | MS.gene95333:CDS |
| ATAGCTCGCGGTAGAAAGAG+TGG | 0.649534 | 1.3:-18013361 | MS.gene95333:CDS |
| GTAGGCCAGTTGGCTGACGA+AGG | 0.651906 | 1.3:-18013439 | MS.gene95333:CDS |
| AAATCTTCCAATCATCATCG+TGG | 0.652434 | 1.3:+18013401 | None:intergenic |
| GCTCCCAGCAAAGAATCAAG+AGG | 0.671318 | 1.3:-18013755 | MS.gene95333:CDS |
| TAGGCCATATGAGTGAAAAG+GGG | 0.691407 | 1.3:-18013258 | MS.gene95333:CDS |
| AAACTTTACCAAGGTTACCG+GGG | 0.698437 | 1.3:+18013587 | None:intergenic |
| AAGAGCCTTCATAAGACCAG+CGG | 0.707222 | 1.3:+18014272 | None:intergenic |
| GGTGCAATGACGATAGCTCG+CGG | 0.741901 | 1.3:-18013373 | MS.gene95333:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTCTTGAAGAATTCTTTA+TGG | + | chr1.3:18013199-18013218 | None:intergenic | 20.0% |
| !! | ATTCTTGAAGAATTCTTTAT+GGG | + | chr1.3:18013198-18013217 | None:intergenic | 20.0% |
| !!! | AAGTTAAGATTAAGTTGAAT+GGG | - | chr1.3:18013288-18013307 | MS.gene95333:CDS | 20.0% |
| ! | ATATGTGAAGACTATATACT+TGG | - | chr1.3:18013632-18013651 | MS.gene95333:CDS | 25.0% |
| ! | CAAATAAAGTTCATTTGATG+AGG | - | chr1.3:18012589-18012608 | MS.gene95333:CDS | 25.0% |
| ! | CAAATGAAAATCCTAATCTA+TGG | - | chr1.3:18013519-18013538 | MS.gene95333:CDS | 25.0% |
| !! | TGAACTTTATTTGATGTTGA+AGG | + | chr1.3:18012582-18012601 | None:intergenic | 25.0% |
| !!! | GAAGTTAAGATTAAGTTGAA+TGG | - | chr1.3:18013287-18013306 | MS.gene95333:CDS | 25.0% |
| AGAAATTCAACTAGAGGAAA+TGG | - | chr1.3:18012915-18012934 | MS.gene95333:intron | 30.0% | |
| ATAAAGTTCATTTGATGAGG+CGG | - | chr1.3:18012592-18012611 | MS.gene95333:CDS | 30.0% | |
| GATACCAACTGAACTTAATT+GGG | + | chr1.3:18012688-18012707 | None:intergenic | 30.0% | |
| GATGATTGGAAGATTTCAAA+AGG | - | chr1.3:18013416-18013435 | MS.gene95333:CDS | 30.0% | |
| GTGAAAATTGAAAAGTTCGA+TGG | - | chr1.3:18012321-18012340 | MS.gene95333:intron | 30.0% | |
| TACAAGATTGTTCATTTCCA+AGG | + | chr1.3:18013250-18013269 | None:intergenic | 30.0% | |
| TGGAAATGAACAATCTTGTA+AGG | - | chr1.3:18013250-18013269 | MS.gene95333:intron | 30.0% | |
| TTCTTCAAGAATTATATCCC+CGG | - | chr1.3:18013206-18013225 | MS.gene95333:intron | 30.0% | |
| TTGTTGTAACTGCAATCAAA+TGG | + | chr1.3:18013502-18013521 | None:intergenic | 30.0% | |
| ! | GTTTTGCAAAGATTCAACAT+GGG | - | chr1.3:18014247-18014266 | MS.gene95333:CDS | 30.0% |
| ! | TGTTTTGCAAAGATTCAACA+TGG | - | chr1.3:18014246-18014265 | MS.gene95333:CDS | 30.0% |
| !! | GTTGATGATATGTTAGTAGT+AGG | - | chr1.3:18014067-18014086 | MS.gene95333:CDS | 30.0% |
| AAAGAAACCAGAATCGATGA+AGG | - | chr1.3:18012419-18012438 | MS.gene95333:intron | 35.0% | |
| AAATCTTCCAATCATCATCG+TGG | + | chr1.3:18013412-18013431 | None:intergenic | 35.0% | |
| AAATGGACGTGGTAAATCAA+AGG | - | chr1.3:18012932-18012951 | MS.gene95333:intron | 35.0% | |
| AACCTTGGTAAAGTTTACCT+TGG | - | chr1.3:18013230-18013249 | MS.gene95333:intron | 35.0% | |
| AAGGAAAACTACCAAGTCTT+CGG | - | chr1.3:18013594-18013613 | MS.gene95333:CDS | 35.0% | |
| AATCTATGGCACAAGAGATT+AGG | - | chr1.3:18013533-18013552 | MS.gene95333:CDS | 35.0% | |
| AATCTCTTGTGCCATAGATT+AGG | + | chr1.3:18013533-18013552 | None:intergenic | 35.0% | |
| AATTGAAAAGTTCGATGGTG+CGG | - | chr1.3:18012326-18012345 | MS.gene95333:intron | 35.0% | |
| ACAACCCAATTAAGTTCAGT+TGG | - | chr1.3:18012681-18012700 | MS.gene95333:intron | 35.0% | |
| ACGAAAAACTTAATCTCCGT+AGG | - | chr1.3:18013353-18013372 | MS.gene95333:CDS | 35.0% | |
| ACTCAAAATCTATCGAGTGT+TGG | - | chr1.3:18012994-18013013 | MS.gene95333:intron | 35.0% | |
| AGAGGAAGAAATTCAACTAG+AGG | - | chr1.3:18012909-18012928 | MS.gene95333:intron | 35.0% | |
| ATAGTCAGCTTTCAGATAAG+TGG | - | chr1.3:18013665-18013684 | MS.gene95333:CDS | 35.0% | |
| ATATACATGCACCAATCAGA+AGG | - | chr1.3:18013852-18013871 | MS.gene95333:intron | 35.0% | |
| ATCACGAGAGATAAGCAAAA+AGG | - | chr1.3:18014187-18014206 | MS.gene95333:CDS | 35.0% | |
| ATCTCTTGAAGAAGCAACAA+TGG | + | chr1.3:18014015-18014034 | None:intergenic | 35.0% | |
| ATGAAGGTTATGCACTCAAA+AGG | - | chr1.3:18013575-18013594 | MS.gene95333:CDS | 35.0% | |
| ATTAGGCCATATGAGTGAAA+AGG | - | chr1.3:18013550-18013569 | MS.gene95333:CDS | 35.0% | |
| ATTCCATATGCTTCAGCAAT+TGG | - | chr1.3:18014367-18014386 | MS.gene95333:CDS | 35.0% | |
| ATTTCTATTGACCGAAGACT+TGG | + | chr1.3:18013608-18013627 | None:intergenic | 35.0% | |
| CAGAAGAAGTGAAGAGAATA+TGG | - | chr1.3:18013880-18013899 | MS.gene95333:intron | 35.0% | |
| CGATACCAACTGAACTTAAT+TGG | + | chr1.3:18012689-18012708 | None:intergenic | 35.0% | |
| CTCTGTATGCAATACTAAAG+AGG | + | chr1.3:18012886-18012905 | None:intergenic | 35.0% | |
| GAACAATCTTGTAAGGTTGT+GGG | - | chr1.3:18013257-18013276 | MS.gene95333:CDS | 35.0% | |
| GACACTTCAAAAATCAGTGT+AGG | - | chr1.3:18013033-18013052 | MS.gene95333:intron | 35.0% | |
| GAGTTTGACATGAAGGATTT+AGG | - | chr1.3:18014136-18014155 | MS.gene95333:CDS | 35.0% | |
| GGAGGAAGAAAAAGAAATCA+TGG | - | chr1.3:18014339-18014358 | MS.gene95333:CDS | 35.0% | |
| GTAAACTTTACCAAGGTTAC+CGG | + | chr1.3:18013228-18013247 | None:intergenic | 35.0% | |
| GTATTGCATACAGAGTAAAG+AGG | - | chr1.3:18012891-18012910 | MS.gene95333:intron | 35.0% | |
| GTCAAAAGAGTTTGACATGA+AGG | - | chr1.3:18014129-18014148 | MS.gene95333:CDS | 35.0% | |
| TAAACTTTACCAAGGTTACC+GGG | + | chr1.3:18013227-18013246 | None:intergenic | 35.0% | |
| TGAACAATCTTGTAAGGTTG+TGG | - | chr1.3:18013256-18013275 | MS.gene95333:CDS | 35.0% | |
| TTAGGCCATATGAGTGAAAA+GGG | - | chr1.3:18013551-18013570 | MS.gene95333:CDS | 35.0% | |
| TTCCAAGGTAAACTTTACCA+AGG | + | chr1.3:18013235-18013254 | None:intergenic | 35.0% | |
| ! | ACTACGATGATTTCTGGATT+TGG | + | chr1.3:18012967-18012986 | None:intergenic | 35.0% |
| ! | ATTAAGTTTTTCGTGAGGTC+GGG | + | chr1.3:18013347-18013366 | None:intergenic | 35.0% |
| ! | GATTAAGTTTTTCGTGAGGT+CGG | + | chr1.3:18013348-18013367 | None:intergenic | 35.0% |
| ! | TAAGTTGAATGGGTCTGTAT+GGG | - | chr1.3:18013298-18013317 | MS.gene95333:CDS | 35.0% |
| ! | TGACGCATTGATATGTTCTT+TGG | - | chr1.3:18013118-18013137 | MS.gene95333:intron | 35.0% |
| !! | TTAAGTTGAATGGGTCTGTA+TGG | - | chr1.3:18013297-18013316 | MS.gene95333:CDS | 35.0% |
| AAACTTTACCAAGGTTACCG+GGG | + | chr1.3:18013226-18013245 | None:intergenic | 40.0% | |
| AACTTCATATACCACTGCCT+TGG | + | chr1.3:18013947-18013966 | None:intergenic | 40.0% | |
| AATCGATGAAGGATGATGAG+TGG | - | chr1.3:18012430-18012449 | MS.gene95333:intron | 40.0% | |
| AATTATATCCCCGGTAACCT+TGG | - | chr1.3:18013215-18013234 | MS.gene95333:intron | 40.0% | |
| AGGCTAAAGAAGAGCTTGTA+TGG | - | chr1.3:18013908-18013927 | MS.gene95333:intron | 40.0% | |
| ATTTGACGATGTTCGTGATC+TGG | - | chr1.3:18012815-18012834 | MS.gene95333:intron | 40.0% | |
| CTGAGAACTACGATGATTTC+TGG | + | chr1.3:18012973-18012992 | None:intergenic | 40.0% | |
| CTTCCAATTGCTGAAGCATA+TGG | + | chr1.3:18014373-18014392 | None:intergenic | 40.0% | |
| CTTGAAGAAGCAACAATGGT+CGG | + | chr1.3:18014011-18014030 | None:intergenic | 40.0% | |
| GGAGTTGTTAGCAGGTTTAT+CGG | - | chr1.3:18014442-18014461 | MS.gene95333:CDS | 40.0% | |
| GGTACAAGTATACATGTGTG+TGG | - | chr1.3:18013805-18013824 | MS.gene95333:intron | 40.0% | |
| GGTCAGGCAAAGAAAATTCT+TGG | - | chr1.3:18014157-18014176 | MS.gene95333:CDS | 40.0% | |
| GTTTGAAAGCTTCATGCACA+AGG | - | chr1.3:18013964-18013983 | MS.gene95333:CDS | 40.0% | |
| TAGGCCATATGAGTGAAAAG+GGG | - | chr1.3:18013552-18013571 | MS.gene95333:CDS | 40.0% | |
| TATGAGTGAAAAGGGGATGA+AGG | - | chr1.3:18013559-18013578 | MS.gene95333:CDS | 40.0% | |
| TGACATGAAGGATTTAGGTC+AGG | - | chr1.3:18014141-18014160 | MS.gene95333:CDS | 40.0% | |
| TGCATGTATATCTCCTCAAG+CGG | + | chr1.3:18013843-18013862 | None:intergenic | 40.0% | |
| TGCTGAAGCATATGGAATCT+TGG | + | chr1.3:18014365-18014384 | None:intergenic | 40.0% | |
| TGGAAGTTTGATGTACGCAA+TGG | - | chr1.3:18014387-18014406 | MS.gene95333:CDS | 40.0% | |
| TGTTGGAATTGTGGAAAGAC+AGG | - | chr1.3:18013011-18013030 | MS.gene95333:intron | 40.0% | |
| ! | CGGAGATTAAGTTTTTCGTG+AGG | + | chr1.3:18013352-18013371 | None:intergenic | 40.0% |
| ! | CTTCTGAGAATCCTTCTGAT+TGG | + | chr1.3:18013866-18013885 | None:intergenic | 40.0% |
| ! | GATATGTTCTTTGGAGAGCA+AGG | - | chr1.3:18013127-18013146 | MS.gene95333:intron | 40.0% |
| ! | TCATCCCCTTTTCACTCATA+TGG | + | chr1.3:18013559-18013578 | None:intergenic | 40.0% |
| ! | TGGTATCGAATTTGACGATG+AGG | - | chr1.3:18012701-18012720 | MS.gene95333:intron | 40.0% |
| ! | TTTCATCTTTTTGCTTCCCG+AGG | + | chr1.3:18012796-18012815 | None:intergenic | 40.0% |
| !! | TCATCATCCTTCATCGATTC+TGG | + | chr1.3:18012429-18012448 | None:intergenic | 40.0% |
| !! | TCTATCGAGTGTTGGAATTG+TGG | - | chr1.3:18013002-18013021 | MS.gene95333:intron | 40.0% |
| !! | TCTGGTTTCTTTTCTGTGAG+AGG | + | chr1.3:18012411-18012430 | None:intergenic | 40.0% |
| AAACCACGACTCTCCTTCTT+TGG | + | chr1.3:18013698-18013717 | None:intergenic | 45.0% | |
| AACCACGACTCTCCTTCTTT+GGG | + | chr1.3:18013697-18013716 | None:intergenic | 45.0% | |
| AAGAGCCTTCATAAGACCAG+CGG | + | chr1.3:18012541-18012560 | None:intergenic | 45.0% | |
| AAGTGGAAGAACCCCAAAGA+AGG | - | chr1.3:18013682-18013701 | MS.gene95333:CDS | 45.0% | |
| ACAGTAGCACTCCAACTATC+TGG | + | chr1.3:18012756-18012775 | None:intergenic | 45.0% | |
| AGCACTCCAACTATCTGGTA+GGG | + | chr1.3:18012751-18012770 | None:intergenic | 45.0% | |
| CAAGTGCTTGTCTATCGAGA+AGG | + | chr1.3:18012458-18012477 | None:intergenic | 45.0% | |
| CAGTCTTCCACGATGATGAT+TGG | - | chr1.3:18013402-18013421 | MS.gene95333:CDS | 45.0% | |
| CCAAGAACAATCACCTCAGA+CGG | - | chr1.3:18014318-18014337 | MS.gene95333:CDS | 45.0% | |
| CTAGAGTAAGAGACCAGAGA+AGG | - | chr1.3:18014499-18014518 | MS.gene95333:CDS | 45.0% | |
| CTTCTCGATAGACAAGCACT+TGG | - | chr1.3:18012456-18012475 | MS.gene95333:intron | 45.0% | |
| GAAAGCTTCATGCACAAGGA+AGG | - | chr1.3:18013968-18013987 | MS.gene95333:CDS | 45.0% | |
| GAATCAAGAGGCGAAAGATG+AGG | - | chr1.3:18013067-18013086 | MS.gene95333:intron | 45.0% | |
| GAGGTGATTGTTCTTGGGAT+AGG | + | chr1.3:18014315-18014334 | None:intergenic | 45.0% | |
| GGTACTCTTTACAAGACAGC+TGG | - | chr1.3:18013470-18013489 | MS.gene95333:CDS | 45.0% | |
| GGTTTGACGAAAGATTCGAC+CGG | - | chr1.3:18013713-18013732 | MS.gene95333:CDS | 45.0% | |
| GTGAAGAGAATATGGTGTGC+AGG | - | chr1.3:18013888-18013907 | MS.gene95333:intron | 45.0% | |
| TAGCACTCCAACTATCTGGT+AGG | + | chr1.3:18012752-18012771 | None:intergenic | 45.0% | |
| TCAACTAGAGGAAATGGACG+TGG | - | chr1.3:18012921-18012940 | MS.gene95333:intron | 45.0% | |
| TCGCCTCTTGATTCTTTGCT+GGG | + | chr1.3:18013061-18013080 | None:intergenic | 45.0% | |
| TCTTGTAAGGTTGTGGGCAA+AGG | - | chr1.3:18013263-18013282 | MS.gene95333:CDS | 45.0% | |
| TGTCTTCCCTACCAGATAGT+TGG | - | chr1.3:18012742-18012761 | MS.gene95333:intron | 45.0% | |
| TTCGCCTCTTGATTCTTTGC+TGG | + | chr1.3:18013062-18013081 | None:intergenic | 45.0% | |
| TTCTCAGTGAAGAGATCCGA+CGG | - | chr1.3:18012838-18012857 | MS.gene95333:intron | 45.0% | |
| TTTACGCTTCGGATGACAGA+AGG | - | chr1.3:18012618-18012637 | MS.gene95333:intron | 45.0% | |
| ! | AGGCGAAAATGACTTGCCAA+CGG | + | chr1.3:18014295-18014314 | None:intergenic | 45.0% |
| ! | CGTCTGAGGTGATTGTTCTT+GGG | + | chr1.3:18014320-18014339 | None:intergenic | 45.0% |
| ! | TCTTTTTCTTCCTCCGTCTG+AGG | + | chr1.3:18014334-18014353 | None:intergenic | 45.0% |
| AAGTTCGATGGTGCGGACTT+TGG | - | chr1.3:18012333-18012352 | MS.gene95333:intron | 50.0% | |
| AATGGTCGGCATTGCACTTC+TGG | + | chr1.3:18013997-18014016 | None:intergenic | 50.0% | |
| ACCACGACTCTCCTTCTTTG+GGG | + | chr1.3:18013696-18013715 | None:intergenic | 50.0% | |
| AGAACAATCACCTCAGACGG+AGG | - | chr1.3:18014321-18014340 | MS.gene95333:CDS | 50.0% | |
| ATAGCTCGCGGTAGAAAGAG+TGG | - | chr1.3:18013449-18013468 | MS.gene95333:CDS | 50.0% | |
| ATGCAGTGGGAGTTGTTAGC+AGG | - | chr1.3:18014434-18014453 | MS.gene95333:CDS | 50.0% | |
| ATGGCCTGAAACAAGCTCCA+AGG | - | chr1.3:18013927-18013946 | MS.gene95333:intron | 50.0% | |
| ATTCACCCAACTCTCTCCGT+CGG | + | chr1.3:18012857-18012876 | None:intergenic | 50.0% | |
| CAACATGGGCGATGCCAAAA+CGG | - | chr1.3:18014261-18014280 | MS.gene95333:CDS | 50.0% | |
| CTCTGGTCTCTTACTCTAGC+AGG | + | chr1.3:18014498-18014517 | None:intergenic | 50.0% | |
| CTTAATCTCCGTAGGCCAGT+TGG | - | chr1.3:18013361-18013380 | MS.gene95333:CDS | 50.0% | |
| GAGTCTTGGGTGTTAGACTC+TGG | - | chr1.3:18013152-18013171 | MS.gene95333:intron | 50.0% | |
| GATGAAAGAGCTTCCGCTTG+AGG | - | chr1.3:18013827-18013846 | MS.gene95333:intron | 50.0% | |
| GCAAAAGAGAAAACCACCGC+TGG | - | chr1.3:18012522-18012541 | MS.gene95333:intron | 50.0% | |
| GCTCCCAGCAAAGAATCAAG+AGG | - | chr1.3:18013055-18013074 | MS.gene95333:intron | 50.0% | |
| GGAGAGCAAGGAAGAGTCTT+GGG | - | chr1.3:18013139-18013158 | MS.gene95333:intron | 50.0% | |
| TCAGGAGGACTTTCGACACA+AGG | + | chr1.3:18013741-18013760 | None:intergenic | 50.0% | |
| TGAAACAAGCTCCAAGGCAG+TGG | - | chr1.3:18013933-18013952 | MS.gene95333:intron | 50.0% | |
| TGAGGCGGTTGTTTACGCTT+CGG | - | chr1.3:18012607-18012626 | MS.gene95333:intron | 50.0% | |
| TGCTAACAACTCCCACTGCA+TGG | + | chr1.3:18014435-18014454 | None:intergenic | 50.0% | |
| TGGAGAGCAAGGAAGAGTCT+TGG | - | chr1.3:18013138-18013157 | MS.gene95333:intron | 50.0% | |
| TGTACGCAATGGTCTGTACG+AGG | - | chr1.3:18014398-18014417 | MS.gene95333:CDS | 50.0% | |
| TGTTCCGTTGAGTGCAGCAA+CGG | - | chr1.3:18013781-18013800 | MS.gene95333:intron | 50.0% | |
| ! | AATGTTGCTTCCACCTCAGG+AGG | - | chr1.3:18013092-18013111 | MS.gene95333:intron | 50.0% |
| ! | ACTGCCTTGGAGCTTGTTTC+AGG | + | chr1.3:18013934-18013953 | None:intergenic | 50.0% |
| ! | CCGTCTGAGGTGATTGTTCT+TGG | + | chr1.3:18014321-18014340 | None:intergenic | 50.0% |
| ! | GCAAATGTTGCTTCCACCTC+AGG | - | chr1.3:18013089-18013108 | MS.gene95333:intron | 50.0% |
| !! | AACCACCGCTGGTCTTATGA+AGG | - | chr1.3:18012533-18012552 | MS.gene95333:intron | 50.0% |
| !!! | ATGGTGCGGACTTTGGCTTT+TGG | - | chr1.3:18012340-18012359 | MS.gene95333:intron | 50.0% |
| ACAGCTGTGAGTAGCTCCTC+GGG | - | chr1.3:18012777-18012796 | MS.gene95333:intron | 55.0% | |
| ACCCCAAAGAAGGAGAGTCG+TGG | - | chr1.3:18013692-18013711 | MS.gene95333:CDS | 55.0% | |
| AGAGATCCGACGGAGAGAGT+TGG | - | chr1.3:18012848-18012867 | MS.gene95333:intron | 55.0% | |
| AGCCTTCATAAGACCAGCGG+TGG | + | chr1.3:18012538-18012557 | None:intergenic | 55.0% | |
| CAAAACGGTTAGCACGCCGT+TGG | - | chr1.3:18014276-18014295 | MS.gene95333:CDS | 55.0% | |
| CACAGCTGTGAGTAGCTCCT+CGG | - | chr1.3:18012776-18012795 | MS.gene95333:intron | 55.0% | |
| CCAGACATTGGCCATGCAGT+GGG | - | chr1.3:18014421-18014440 | MS.gene95333:CDS | 55.0% | |
| CCTCCTGACCAAGTGTGTTC+AGG | - | chr1.3:18013753-18013772 | MS.gene95333:CDS | 55.0% | |
| CCTGAACACACTTGGTCAGG+AGG | + | chr1.3:18013756-18013775 | None:intergenic | 55.0% | |
| CCTGACCAAGTGTGTTCAGG+CGG | - | chr1.3:18013756-18013775 | MS.gene95333:CDS | 55.0% | |
| GAGATCCGACGGAGAGAGTT+GGG | - | chr1.3:18012849-18012868 | MS.gene95333:intron | 55.0% | |
| GGACTTTCGACACAAGGAGC+CGG | + | chr1.3:18013735-18013754 | None:intergenic | 55.0% | |
| GGTGCAATGACGATAGCTCG+CGG | - | chr1.3:18013437-18013456 | MS.gene95333:CDS | 55.0% | |
| GTCTGTACGAGGCCAGACAT+TGG | - | chr1.3:18014409-18014428 | MS.gene95333:CDS | 55.0% | |
| TGTAGCCTTCGTCAGCCAAC+TGG | + | chr1.3:18013379-18013398 | None:intergenic | 55.0% | |
| ! | CAACGGCGTGCTAACCGTTT+TGG | + | chr1.3:18014278-18014297 | None:intergenic | 55.0% |
| ! | GATGACAGAAGGCGCATCAG+TGG | - | chr1.3:18012629-18012648 | MS.gene95333:intron | 55.0% |
| ! | TTCGTCAGCCAACTGGCCTA+CGG | + | chr1.3:18013372-18013391 | None:intergenic | 55.0% |
| ACACGCCGCCTGAACACACT+TGG | + | chr1.3:18013764-18013783 | None:intergenic | 60.0% | |
| ACCGCCGTTGCTGCACTCAA+CGG | + | chr1.3:18013788-18013807 | None:intergenic | 60.0% | |
| CAATGCGTCACCTCCTCCTG+AGG | + | chr1.3:18013108-18013127 | None:intergenic | 60.0% | |
| CCCACTGCATGGCCAATGTC+TGG | + | chr1.3:18014424-18014443 | None:intergenic | 60.0% | |
| CCGCCTGAACACACTTGGTC+AGG | + | chr1.3:18013759-18013778 | None:intergenic | 60.0% | |
| GCCAGACATTGGCCATGCAG+TGG | - | chr1.3:18014420-18014439 | MS.gene95333:CDS | 60.0% | |
| GTAGGCCAGTTGGCTGACGA+AGG | - | chr1.3:18013371-18013390 | MS.gene95333:CDS | 60.0% | |
| GTTGCTTCCACCTCAGGAGG+AGG | - | chr1.3:18013095-18013114 | MS.gene95333:intron | 60.0% | |
| TCCGTTGAGTGCAGCAACGG+CGG | - | chr1.3:18013784-18013803 | MS.gene95333:intron | 60.0% | |
| TGCGTCACCTCCTCCTGAGG+TGG | + | chr1.3:18013105-18013124 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.3 | gene | 18012300 | 18014532 | 18012300 | ID=MS.gene95333 |
| chr1.3 | mRNA | 18012300 | 18014532 | 18012300 | ID=MS.gene95333.t1;Parent=MS.gene95333 |
| chr1.3 | exon | 18013962 | 18014532 | 18013962 | ID=MS.gene95333.t1.exon1;Parent=MS.gene95333.t1 |
| chr1.3 | CDS | 18013962 | 18014532 | 18013962 | ID=cds.MS.gene95333.t1;Parent=MS.gene95333.t1 |
| chr1.3 | exon | 18013252 | 18013799 | 18013252 | ID=MS.gene95333.t1.exon2;Parent=MS.gene95333.t1 |
| chr1.3 | CDS | 18013252 | 18013799 | 18013252 | ID=cds.MS.gene95333.t1;Parent=MS.gene95333.t1 |
| chr1.3 | exon | 18012550 | 18012612 | 18012550 | ID=MS.gene95333.t1.exon3;Parent=MS.gene95333.t1 |
| chr1.3 | CDS | 18012550 | 18012612 | 18012550 | ID=cds.MS.gene95333.t1;Parent=MS.gene95333.t1 |
| chr1.3 | exon | 18012300 | 18012329 | 18012300 | ID=MS.gene95333.t1.exon4;Parent=MS.gene95333.t1 |
| chr1.3 | CDS | 18012300 | 18012329 | 18012300 | ID=cds.MS.gene95333.t1;Parent=MS.gene95333.t1 |
| Gene Sequence |
| Protein sequence |
